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Microbiology test result reporting times and association with outcomes of adults hospitalised with unspecified pneumonia: a data linkage study.
  • Anil Shrestha,
  • Andrew Georgiou,
  • Nasir Wabe
Anil Shrestha
Australian Institute of Health Innovation

Corresponding Author:[email protected]

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Andrew Georgiou
Centre for Health Systems and Safety Research, Australian Institute of Health Innovation, Macquarie University
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Nasir Wabe
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Background: Pneumonia is one of the leading causes of mortality and morbidity worldwide. Microbiology tests play a critical role in the diagnosis of pneumonia. Our study aimed to determine microbiology result reporting times and evaluate its association with outcomes of adult patients (≥18 years) hospitalized with pneumonia. Methods: A 3-year (2016-2018) retrospective cohort study in six hospitals in New South Wales, Australia. Study data were obtained by linking hospital and laboratory system databases. Result reporting times including time from admission to the first and the last microbiology test results were determined. The outcome measures were hospital length of stay (LOS) and in-hospital mortality. We fit median and logistic regression to evaluate the association of time-to-first microbiological result with hospital LOS and in-hospital mortality respectively. Results: A total of 6,298 patients met the inclusion criteria. Of these, 85.3% (n=5,375) ordered at least one microbiology test. The top 5 microbiology tests were blood culture, urine culture, respiratory polymerase chain reaction (PCR), urine antigen and sputum culture. The median time-to-first microbiology result was 26 hrs while the median time-to last test result was 144 hrs. The rate of in-hospital mortality was 5.9% (n=371). After adjusting for confounders, every 5 hrs increase in the time to-first microbiology test was associated with an increase of 3.9 hrs in the median hospital LOS [95% Confidence Interval (CI), 3.5 to 4.3; P<0.001]. There was no association between time-to-first microbiology result and in-hospital mortality (OR 1.01; 95% CI 1.00-1.02; P=0.122). Conclusion: Time-to-first microbiology result reporting was significantly associated with hospital LOS but not with in-hospital mortality. Further research should be conducted to understand if improving result reporting times can reduce the length of hospital stay of patients. Key words: Microbiology diagnostics; Test result reporting; Pneumonia; Diagnostic informatics
20 Jun 2021Submitted to International Journal of Clinical Practice
22 Jun 2021Assigned to Editor
22 Jun 2021Submission Checks Completed
07 Aug 2021Reviewer(s) Assigned
16 Aug 2021Review(s) Completed, Editorial Evaluation Pending
19 Sep 2021Editorial Decision: Revise Minor