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CHEE2001 Project 2 Report
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Theoretical And Applied Climatology Template
Unnamed Article
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C-terminus:helix region interactions
N-terminus:helix region interactions
strong interactions of residues within the 15-24 region that stabilize the helix
interactions between residues 40-35, 33-27, and 3-9
lactam bridge between Asp23 and a Lys residue that we substituted for Val40
covalent linkage prevents interaction of the C-terminus with the core helix
predicted to preclude formation of the stable dimer state formed through concerted collapse of two monomers and produce distinct assembly behavior
\label{fig:peptide_association_scheme_v9.pdf}
displayed no dimer band, but an intense monomer band
a band migrating below monomer
suggesting that structure 3 is capable of forming two conformers in SDS-PAGE, one with an Mr consistent with wild type Aβ40 and one with a smaller Mr of ≈3500.
\label{fig:sdspage}
structure 3 spectrum contained a large -7/2 dimer (formed from -4 and -3 monomers) peak
suggesting that self association of structure 3 produces a dimer structure unique from that formed by wild type Aβ40
“collision cross section” (σ) value for structure 3 was larger than that of wild type Aβ40 (620 vs 607 Å2)
supporting the explanation that structure 3 forms a unique conformer
\label{fig:Spectral_Overlay}
an immediate monotonic increase in fluorescence that plateaued at 12 days at a level that was ≈1/2 that of Aβ40
appears to self-associate without a substantial lag phase (<<1 days)
appears to produce aggregates that display substantially less β-sheet than do wild type assemblies
\label{fig:LMM-tht}
far fewer fibrils
a number of structures not seen with WT Aβ40, including short worm-like structures, longer worm-like structures, and fibrils with prominent helical twists
multifilar rod-like structures
some of the rod-like structures had “sausage-link” morphologies with the links occurring at intervals of ≈270 nm
\label{fig:em}
Appendices for Speech Recognition: An Object Oriented Approach
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