this is for holding javascript data
Antonino Ingargiola Fixes in data load section
about 8 years ago
Commit id: f8d60afae8d9815c2c5796a05bfd7b5b016348d7
deletions | additions
diff --git a/dataload.tex b/dataload.tex
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\subsection{Loading the Data}
\label{sec:dataload}
While FRETBursts can load several data files formats,
we encourage users to adopt the recently introduced Photon-HDF5
file format~\cite{Ingargiola2016}.
Photon-HDF5 is an HDF5-based, open format, specifically designed
for freely-diffusing smFRET and
other timestamp-based experiments.
Photon-HDF5 is a self-documented, platform- and language-independent binary format,
which supports compression and allows saving photon data (e.g. timestamps)
and measurement-specific metadata
(e.g. setup and sample information, authors, provenance, etc.).
Moreover, Photon-HDF5 is designed for long-term data preservation and aims
to facilitate data sharing
between different software and research groups.
All example data files provided with FRETBursts use the Photon-HDF5 format.
diff --git a/figures/ALEX_alternation_double/caption.tex b/figures/ALEX_alternation_double/caption.tex
index 03f0e97..0fbbbce 100644
--- a/figures/ALEX_alternation_double/caption.tex
+++ b/figures/ALEX_alternation_double/caption.tex
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\label{fig:altern_hist_double}
\textbf{Alternation histograms for μs-ALEX and ns-ALEX measurements.}
Histograms used for the selection/determination
of the alternation periods for two typical smFRET-ALEX experiments.
Distributions of photons detected by donor channel are in \textit{green},
and by acceptor channel in \textit{red}.
The light \textit{green} and \textit{red} shaded areas indicate the donor
and acceptor period definitions.
(a) μs-ALEX alternation histogram, i.e. histogram of timestamps \textit{modulo}
the alternation period for a smFRET measurement.
(b) ns-ALEX
TCSPC nanotime histogram for a smFRET measurement.
Both plots have been generated by the same plot function
(\texttt{plot\_alternation\_hist()}).
Additional information on these specific measurements can be found in the
attached notebook
(\href{http://nbviewer.jupyter.org/github/tritemio/fretbursts_paper/blob/master/notebooks/Figures\%20-\%20ALEX\%20histograms.ipynb}{link}).