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X. Michalet edited fitting_2.tex
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Unfortunately, the method is not of straightforward application for
freely-diffusing data as it requires a special selection
criterion for filtering bursts with quasi-Poisson rates.
Santoso~\cite{santoso_probing_2009} Santoso et al.~\cite{santoso_probing_2009} and
Kalinin~\cite{Kalinin2010} Kalinin et al.~\cite{Kalinin2010}
extended the PDA approach to estimate conversion rates between different
states by comparing FRET histograms as a function of the time-bin size.
In addition, Gopich and Szabo~\cite{Gopich2009, gopich_theory_2011} developed
...
In case of measurement including lifetime, the multiparameter fluorescence
detection (MFD) method allows to identify dynamics from the deviation
from the linear relation between lifetime and E~\cite{sisamakis_accurate_2010}.
Hoffman~\cite{hoffmann_quantifying_2011} Hoffman et al.~\cite{hoffmann_quantifying_2011} proposed a method
called RASP (recurrence analysis of single particles) to extend
the timescale of detectable kinetics.
Hoffman
computes et al. compute the probability that two nearby bursts are due to
the same molecule and therefore allows setting a time-threshold
for considering consecutive bursts as the same single-molecule event.
...
Finally, two related methods for discriminating between static heterogeneity
and sub-millisecond dynamics are Burst Variance Analysis
(BVA) proposed by
Torella~\cite{Torella_2011} Torella et al.~\cite{Torella_2011} and
two-channel kernel density estimator (2CDE) proposed by
Tomov~\cite{Tomov_2012}. Tomov et al.~\cite{Tomov_2012}. The BVA method is described in the next section.
The 2CDE method, which has been implemented in FRETBursts, computes local
photon rates from timestamps within bursts using
Kernel Density Estimation (KDE)