this is for holding javascript data
Eitan Lerner edited dataload.tex
over 9 years ago
Commit id: b0d125400f5b88091c51b9231cc5901ed7c880be
deletions | additions
diff --git a/dataload.tex b/dataload.tex
index ca93916..af44964 100644
--- a/dataload.tex
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...
\end{verbatim}
In the previous example, we set the timestamp unit (\verb|clk_p|) to 10~ns
and we specify that the data is not from an ALEX
measurements. measurement. Creating
\verb|Data| objects for ALEX and nsALEX measurements follows the same lines.
We point the interested readers to the
\href{https://github.com/tritemio/FRETBursts/blob/master/fretbursts/loader.py}{loader module source code}
...
with the currently selected donor and acceptor excitation periods
(if no selection has been made yet, default values will be shown).
Figure~\ref{fig:altern_hist} shows a typical alternation histogram for
a µs-ALEX measurement
with the
highlighted donor and acceptor excitation
periods. periods highlighted.
To In order to change the period definition shown in figure~\ref{fig:altern_hist}
the user can execute:
\begin{verbatim}
...
where \verb|D_ON| and \verb|A_ON| are tuples representing
the start-stop range for the donor and acceptor excitation periods
in timestamps units. After changing the parameters, a new
plot alternation plot will show the updated period selections.
When the alternation period definition is satisfactory, it can
be applied using the
...
loader.alex_apply_period(d)
\end{verbatim}
After
running this command only the photons inside the defined excitation periods
will be present in \verb|d|, therefore
in order to apply a new alternation period
it is necessary to reload the file.
For ns-ALEX measurements the exact same functions and syntax
is are used.
This time, however, the plot function will show a
nanotime Time-Correlated Single Photon Counting (TCSPC) histogram
and of two fluorescence decays originating from the
two interspaced excitation sources. The period ranges will be expressed in nanotime units
(TCSPC time bins) instead of
timestamp units.