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Antonino Ingargiola edited Introduction.tex
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\subsection{smFRET and burst analysis}
FRETBursts is an open source python software for burst analysis of confocal
single-molecule FRET (smFRET) data. The software can analyze smFRET measurements
with one or several excitation spots~\cite{Ingargiola_2013}. The supported
excitation schemes include single lasers, two alternating CW lasers (µs-ALEX\cite{Kapanidis_2005})
and 2 interleaved pulsed lasers (ns-ALEX or PIE\cite{M_ller_2005}).
FRETBursts is hosted and and openly developed~\cite{Prli__2012} on GitHub, where
issues, feature requests and contributions can be reported.
In this paper we provide a broad overview of FRETBursts.
The paper is structured as follows.