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Eitan Lerner edited background-estimation.tex
over 9 years ago
Commit id: 96723e9b41e692fc15dcad16328d3a24929dc391
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\label{sec:bg_calc}
The first step of smFRET analysis involves estimating the background level.
For example, to compute the background every
30s, 30 s, using a minimal timestamp
delay threshold of 2 ms for all the photon streams we execute:
\begin{verbatim}
...
\href{http://fretbursts.readthedocs.org/en/latest/background.html}
{\texttt{background} module}). The second argument, \verb|time_s|, is the
\textit{background period} (section~\ref{sec:bg_intro}) and the third argument
is the
timestamp delay threshold above which the distribution is exponential.
It is possible to use different thresholds
for each photon stream passing a
\href{https://docs.python.org/2/tutorial/datastructures.html#tuples-and-sequences}{tuple}