this is for holding javascript data
Antonino Ingargiola Xavier edits on Data load
almost 9 years ago
Commit id: 8beee04231b30b056918bb852302b0da24ea5fe1
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While FRETBursts can load data files from a variety of file formats,
the authors encourage adopting \href{http://photon-hdf5.readthedocs.org/}{Photon-HDF5},
a format specifically designed for freely-diffusing smFRET and other timestamp-based
data. experiments.
Photon-HDF5 is a self-documented and efficient format
that which allows saving both
the raw per-photon data and
the measurement-specific meta-data
(setup and sample information, authors, provenance etc...).
Photon-HDF5 assures long-term accessibility of the data and aims to ease data sharing
among different software and research groups.
All the FRETBursts
exemplary exemple data files are saved in Photon-HDF5 and can be opened with
standard viewers such as \href{http://www.hdfgroup.org/products/java/hdfview/}{HDFView}.
Additional data files can be found here[multi-spot paper data files].
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(see section~\ref{sec:data_intro}).
The same command can load data from a variety of measurement types stored
in a Photon-HDF5 file.
Specifically, For instance, data
employing generated using different excitation schemes
(CW vs pulsed, single-laser vs 2 alternating lasers) or with any number of excitation spots
is automatically recognized.
Other file formats
that which FRETBursts can load include μs-ALEX data stored in
SM sm format
(a binary format
saved by a common LabVIEW program formerly used in
μs-ALEX-smFRET setups), our lab),
ns-ALEX data stored in SPC format (a binary format used by TCSPC Becker \& Hickl cards).
More information on loading
those these file formats and on manually loading other arbitrary formats
can be found in the
\href{http://fretbursts.readthedocs.org/en/latest/loader.html}{\texttt{loader} module documentation}.
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\subsection{Alternation parameters}
\label{sec:alternation}
For µs-ALEX and ns-ALEX
data data, it is necessary to identify the
different
alternation periods for donor and acceptor excitation.
The functions