this is for holding javascript data
Antonino Ingargiola edited smFRET data analysis.tex
over 9 years ago
Commit id: 7a5ad6373a8db8195f359d50c62332e885d5380f
deletions | additions
diff --git a/smFRET data analysis.tex b/smFRET data analysis.tex
index 556f916..79af001 100644
--- a/smFRET data analysis.tex
+++ b/smFRET data analysis.tex
...
\subsection{Photon streams}
\label{sec:ph_streams}
The fundamental data at the core of smFRET experiments is the array of photon timestamps. In single-spot measurements, all the timestamps are stored in a single array. In multi-spot measurements we have as many timestamps
array arrays as the number of excitation spots.
Each timestamps array contains timestamps from both the donor (D) and the acceptor channel (A). In ALEX
measurement, measurements, we can further differentiate between photons emitted during D and A excitation periods. In FRETBursts the different
selection selections of photons/timestamps are called "photon streams" and they are specified with a \href{http://fretbursts.readthedocs.org/en/latest/data_class.html#module-fretbursts.ph_sel}{\texttt{Ph\_sel} object} . In non-ALEX smFRET data we have 3 base photon streams (table~\ref{tab:ph_sel_smfret}), while in ALEX data we have 5 base photon streams
(table~\ref{tab:ph_sel_alex}).
The \href{http://fretbursts.readthedocs.org/en/latest/data_class.html#module-fretbursts.ph_sel}{\texttt{Ph\_sel} class} allows to express any combination of photon streams.