this is for holding javascript data
Antonino Ingargiola edited Introduction.tex
over 9 years ago
Commit id: 4a1b32764b017af8b6142d403046c4dd08754d59
deletions | additions
diff --git a/Introduction.tex b/Introduction.tex
index 7336224..55e9e68 100644
--- a/Introduction.tex
+++ b/Introduction.tex
...
FRETBursts is a python package for burst analysis of confocal single-molecule FRET
(smFRET) data.
\subsection{Installation}
FRETBursts \textit{Expand abstract to introduce smFRET and what is
a standard python package that requires the "scipy stack", a set of core
scientific python packages.
The "scipy stack" is easily installed through a free scientific python distribution such as Continuum Anaconda, although some users may prefer another distribution or a manual installation. burst analisys}.
FRETBursts can be installed through the standard python package manager (PIP) with
the command \texttt{pip install fretbursts}. Alternatively the latest development version can be installed from GitHub.
For more information on different installation methods see the \href{http://fretbursts.readthedocs.org/en/latest/installation.html}{FRETBursts documentation}.
\subsection{Executing FRETBursts}
For interactive work, we strongly encourage to use FRETBursts through the IPython Notebook environment. All the FRETBursts tutorials are ipython notebook documents and, indeed, a quick way to start a new analysis is copying a pre-existing FRETBursts notebook and modifying it.
The "notebook workflow"\cite{Shen_2014} has the advantage of automatically recording all the analysis steps including
data file names, software versions, analysis details and the full output (figures, tables, etc...).