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Supplemental Material for WASP: allele-specific methods for unbiased discovery of molecular quantitative trait loci
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layout.md
untitled.tex WASP mapping intro.tex how the mapping works.tex Testing against N masked.tex QTL testing with WASP.tex Table of variables.tex figures/WASP_mapping_pipeline/WASP_mapping_pipeline.png CHT intro.tex Basic Model.tex Modeling read depths.tex Correcting read depth and GC.tex figures/all_examples/all_examples.png Modeling Allelic Imbalance.tex Correcting for incorrect genotype calls.tex The combined likelihood test.tex Estimating overdispersion parameters.tex Correcting for unknown covariates using principal components.tex figures/WASP_H3K27ac_permuted/WASP_H3K27ac_permuted.png CHT calibration.tex Sensitivity analysis using previously identified eQTLs.tex