this is for holding javascript data
Bryce van de Geijn added Estimating overdispersion parameters.tex
almost 10 years ago
Commit id: ec4bc4f144c23281b3cbede09a57abe71cc0a5c0
deletions | additions
diff --git a/Estimating overdispersion parameters.tex b/Estimating overdispersion parameters.tex
new file mode 100644
index 0000000..abd4080
--- /dev/null
+++ b/Estimating overdispersion parameters.tex
...
\subsection{Estimating overdispersion parameters}
In order to estimate the genome-wide overdispersion parameters $\Phi_i$ and $\Upsilon_i$, we use the same likelihood equations as in the CHT, but assume that there are no genetic effects. Since the allele specific and read depth parts of the likelihood equation are independent, we can fit the overdispersion parameters separately.
