deletions | additions       diff --git a/Testing against N masked.tex b/Testing against N masked.tex  index 4d12f12..a8a9587 100644  --- a/Testing against N masked.tex  +++ b/Testing against N masked.tex 
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\subsection{Comparing WASP mapping to N-masked and personal genome mapping}  % TODO: verify that IMPUTE ref panel info correct  To evaluate the accuracy of allelic mapping using WASP, we simulated 100 bp reads from a lymphoblastoid cell line (GM12878) that has been genotyped by the 1000 Genomes and HapMap projects. We additionally imputed and phased genotypes for this cell line with IMPUTE2 \cite{Howie_Donnelly_Marchini_2009} using the 1000 Genomes Phase1 integrated version 3 reference panel.