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Graham McVicker edited Sensitivity analysis using previously identified eQTLs.tex
over 9 years ago
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\subsubsection{Identifying known European eQTLs in 70 Yoruba LCLs}
We downloaded a a set of 1895 eQTLs which were identified in 462 European lymphoblastoid cell lines (LCLs) by the GEUVADIS
project\cite{24037378}. project \cite{24037378}. We identified the subset of these eQTL SNPs that were segregating in an independent dataset of 69 Yoruba LCLs \cite{Stephens_Gilad_Pritchard_2010}. We then applied the CHT and linear model to the RNA-seq data from the Yoruba LCLs.
\subsubsection{Genome-wide QTL discovery in small sample sizes of ChIP-seq data}