deletions | additions
diff --git a/.texpadtmp/Smith&MacManes.log b/.texpadtmp/Smith&MacManes.log
index 44cb50a..f3f0041 100644
--- a/.texpadtmp/Smith&MacManes.log
+++ b/.texpadtmp/Smith&MacManes.log
...
This is XeTeX, Version 3.1415926-2.5-0.9999.3 (TeX Live 2013) (format=xelatex 2013.5.30)
24 25 JUL 2014
20:49 07:34
entering extended mode
restricted \write18 enabled.
file:line:error style messages enabled.
...
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
) (/usr/local/texlive/2013/texmf-dist/tex/latex/natbib/natbib.sty
Package: natbib 2010/09/13 8.31b (PWD, AO)
\bibhang=\skip43
\bibsep=\skip44
LaTeX Info: Redefining \cite on input line 694.
\c@NAT@ctr=\count88
) (/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hyperref.sty
Package: hyperref 2012/11/06 v6.83m Hypertext links for LaTeX
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-hyperref.sty
Package: hobsub-hyperref 2012/05/28 v1.13 Bundle oberdiek, subset hyperref (HO)
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/hobsub-generic.sty
Package: hobsub-generic 2012/05/28 v1.13 Bundle oberdiek, subset generic (HO)
Package: hobsub 2012/05/28 v1.13 Construct package bundles (HO)
Package: infwarerr 2010/04/08 v1.3 Providing info/warning/error messages (HO)
...
(etexcmds) In the latter case, load this package earlier.
Package: kvsetkeys 2012/04/25 v1.16 Key value parser (HO)
Package: kvdefinekeys 2011/04/07 v1.3 Define keys (HO)
Package: pdftexcmds 2011/11/29 v0.20 Utility functions of pdfTeX for LuaTeX
(HO
) (HO)
Package pdftexcmds Info: LuaTeX not detected.
Package pdftexcmds Info: pdfTeX >= 1.30 not detected.
Package pdftexcmds Info: \pdf@primitive is available.
Package pdftexcmds Info: \pdf@ifprimitive is available.
Package pdftexcmds Info: \pdfdraftmode not found.
Package: pdfescape 2011/11/25 v1.13 Implements pdfTeX's escape features (HO)
Package: bigintcalc 2012/04/08 v1.3 Expandable calculations on big integers
(HO
) (HO)
Package: bitset 2011/01/30 v1.1 Handle bit-vector datatype (HO)
Package: uniquecounter 2011/01/30 v1.2 Provide unlimited unique counter (HO)
)
...
Package: atbegshi 2011/10/05 v1.16 At begin shipout hook (HO)
Package: refcount 2011/10/16 v3.4 Data extraction from label references (HO)
Package: hycolor 2011/01/30 v1.7 Color options for hyperref/bookmark (HO)
) (/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/keyval.sty
Package: keyval 1999/03/16 v1.13 key=value parser (DPC)
\KV@toks@=\toks14
) (/usr/local/texlive/2013/texmf-dist/tex/generic/ifxetex/ifxetex.sty
Package: ifxetex 2010/09/12 v0.6 Provides ifxetex conditional
) (/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/auxhook.sty
Package: auxhook 2011/03/04 v1.3 Hooks for auxiliary files (HO)
) (/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/kvoptions.sty
Package: kvoptions 2011/06/30 v3.11 Key value format for package options (HO)
)
\@linkdim=\dimen103
\Hy@linkcounter=\count89
\Hy@pagecounter=\count90
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2012/11/06 v6.83m Hyperref: PDFDocEncoding definition (HO)
)
\Hy@SavedSpaceFactor=\count91
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/hyperref.cfg
File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
)
Package hyperref Info: Hyper figures OFF on input line 4443.
...
Package hyperref Info: Implicit mode ON; LaTeX internals redefined.
Package hyperref Info: Bookmarks ON on input line 4688.
\c@Hy@tempcnt=\count92
(/usr/local/texlive/2013/texmf-dist/tex/latex/url/url.sty
\Urlmuskip=\muskip10
Package: url 2006/04/12 ver 3.3 Verb mode for urls, etc.
)
...
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/hxetex.def
File: hxetex.def 2012/11/06 v6.83m Hyperref driver for XeTeX
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/puenc.def
File: puenc.def 2012/11/06 v6.83m Hyperref: PDF Unicode definition (HO)
) (/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/stringenc.sty
Package: stringenc 2011/12/02 v1.10 Convert strings between diff. encodings
(HO
) (HO)
)
\pdfm@box=\box26
\c@Hy@AnnotLevel=\count97
\HyField@AnnotCount=\count98
\Fld@listcount=\count99
\c@bookmark@seq@number=\count100
(/usr/local/texlive/2013/texmf-dist/tex/latex/oberdiek/rerunfilecheck.sty
Package: rerunfilecheck 2011/04/15 v1.7 Rerun checks for auxiliary files (HO)
Package rerunfilecheck Info: Feature \pdfmdfivesum is not available
(rerunfilecheck) (e.g. pdfTeX or LuaTeX with package `pdftexcmds').
(rerunfilecheck) Therefore file contents cannot be checked
efficien
tly efficiently
(rerunfilecheck) and the loading of the package is aborted.
)
\Hy@SectionHShift=\skip45
) (/usr/local/texlive/2013/texmf-dist/tex/latex/lineno/lineno.sty
Package: lineno 2005/11/02 line numbers on paragraphs v4.41
Invalid UTF-8 byte or sequence at line 296 replaced by U+FFFD.
\linenopenalty=\count101
...
\bframesep=\dimen111
\bframebox=\box27
LaTeX Info: Redefining \\ on input line 3056.
) (/usr/local/texlive/2013/texmf-dist/tex/latex/amsmath/amsmath.sty
Package: amsmath 2013/01/14 v2.14 AMS math features
\@mathmargin=\skip46
For additional information on amsmath, use the `?' option.
(/usr/local/texlive/2013/texmf-dist/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01
(/usr/local/texlive/2013/texmf-dist/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks16
\ex@=\dimen112
)) (/usr/local/texlive/2013/texmf-dist/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen113
) (/usr/local/texlive/2013/texmf-dist/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
\inf@bad=\count108
...
\mathdisplay@stack=\toks20
LaTeX Info: Redefining \[ on input line 2665.
LaTeX Info: Redefining \] on input line 2666.
) (/usr/local/texlive/2013/texmf-dist/tex/latex/amsfonts/amssymb.sty
Package: amssymb 2013/01/14 v3.01 AMS font symbols
(/usr/local/texlive/2013/texmf-dist/tex/latex/amsfonts/amsfonts.sty
Package: amsfonts 2013/01/14 v3.01 Basic AMSFonts support
\symAMSa=\mathgroup4
\symAMSb=\mathgroup5
LaTeX Font Info: Overwriting math alphabet `\mathfrak' in version `bold'
(Font) U/euf/m/n --> U/euf/b/n on input line 106.
)) (/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/graphicx.sty
Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/graphics.sty
Package: graphics 2009/02/05 v1.0o Standard LaTeX Graphics (DPC,SPQR)
(/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
) (/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/graphics.cfg
File: graphics.cfg 2010/04/23 v1.9 graphics configuration of TeX Live
)
Package graphics Info: Driver file: xetex.def on input line 91.
(/usr/local/texlive/2013/texmf-dist/tex/xelatex/xetex-def/xetex.def
File: xetex.def 2013/04/29 v0.96 LaTeX color/graphics driver for XeTeX (RRM/JK)
))
\Gin@req@height=\dimen121
\Gin@req@width=\dimen122
) (/usr/local/texlive/2013/texmf-dist/tex/latex/cite/cite.sty
LaTeX Info: Redefining \cite on input line 302.
LaTeX Info: Redefining \nocite on input line 373.
Package: cite 2010/09/10 v 5.3
) (/usr/local/texlive/2013/texmf-dist/tex/latex/graphics/color.sty
Package: color 2005/11/14 v1.0j Standard LaTeX Color (DPC)
(/usr/local/texlive/2013/texmf-dist/tex/latex/latexconfig/color.cfg
File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive
)
Package color Info: Driver file: xetex.def on input line 130.
) (/usr/local/texlive/2013/texmf-dist/tex/latex/caption/caption.sty
Package: caption 2013/05/02 v3.3-89 Customizing captions (AR)
(/usr/local/texlive/2013/texmf-dist/tex/latex/caption/caption3.sty
Package: caption3 2013/05/02 v1.6-88 caption3 kernel (AR)
Package caption3 Info: TeX engine: e-TeX on input line 57.
\captionmargin=\dimen123
...
)
\c@ContinuedFloat=\count120
Package caption Info: hyperref package is loaded.
) (/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.aux
/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.aux:
37: /Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.aux:37: Package natbib Error: Bibliography not compatible with author-year
citation
s. citations.
(natbib) Press to continue in numerical citation style.
See the natbib package documentation for explanation.
Type H for immediate help.
...
...
Package hyperref Info: Link coloring OFF on input line 66.
(/usr/local/texlive/2013/texmf-dist/tex/latex/hyperref/nameref.sty
Package: nameref 2012/10/27 v2.43 Cross-referencing by name of section
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/gettitlestring.sty
Package: gettitlestring 2010/12/03 v1.4 Cleanup title references (HO)
)
\c@section@level=\count121
...
LaTeX Info: Redefining \ref on input line 66.
LaTeX Info: Redefining \pageref on input line 66.
LaTeX Info: Redefining \nameref on input line 66.
(/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.out
)
(/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.out
) (/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.out) (/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.out)
\@outlinefile=\write3
\openout3 = `Smith&MacManes.out'.
...
File: umsa.fd 2013/01/14 v3.01 AMS symbols A
)
LaTeX Font Info: Try loading font information for U+msb on input line 75.
(/usr/local/texlive/2013/texmf-dist/tex/latex/amsfonts/umsb.fd
File: umsb.fd 2013/01/14 v3.01 AMS symbols B
)
Package natbib Warning: Citation `Li:2014er' on page 1 undefined on input line
98. 96.
Underfull \hbox (badness 10000) in paragraph at lines
98--99 96--97
[]
Package natbib Warning: Citation `Modrek:2001ud' on page 1 undefined on input
l
ine 100. line 98.
Package natbib Warning: Citation `Johnson:2003kh' on page 1 undefined on input line
100. 98.
Underfull \hbox (badness 10000) in paragraph at lines
100--101 98--99
[]
(/usr/local/texlive/2013/texmf-dist/tex/generic/oberdiek/se-ascii-print.def
File: se-ascii-print.def 2011/12/02 v1.10 stringenc: Printable ASCII characters
) [1
]
Underfull \hbox (badness 10000) in paragraph at lines 106--107
[]
Underfull \hbox (badness 10000) in paragraph at lines 108--109
[]
...
[]
Underfull \hbox (badness 10000) in paragraph at lines
116--117 117--118
[]
[2]
Underfull \hbox (badness 10000) in paragraph at lines 119--120
[]
(/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.bbl
) (/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.bbl)
Package natbib Warning: There were undefined citations.
Package atveryend Info: Empty hook `BeforeClearDocument' on input line
141. 139.
[3]
Package atveryend Info: Empty hook `AfterLastShipout' on input line
141.
(/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.aux
) 139.
(/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.aux)
Package atveryend Info: Empty hook `AtVeryEndDocument' on input line
141. 139.
Package atveryend Info: Empty hook `AtEndAfterFileList' on input line
141. 139.
Package atveryend Info: Empty hook `AtVeryVeryEnd' on input line
141. 139.
)
Here is how much of TeX's memory you used:
10573 strings out of 493938
150508 string characters out of 6148857
223574 224574 words of memory out of 5000000
13806 multiletter control sequences out of 15000+600000
11029 words of font info for 41 fonts, out of 8000000 for 9000
1144 hyphenation exceptions out of 8191
36i,5n,38p,980b,340s 36i,5n,38p,980b,379s stack positions out of 5000i,500n,10000p,200000b,80000s
Output written on
/Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/S
mith&MacManes.pdf /Users/macmanes/Documents/feeding_transcriptomes/.texpadtmp/Smith&MacManes.pdf (3 pages).
diff --git a/.texpadtmp/Smith&MacManes.synctex.gz b/.texpadtmp/Smith&MacManes.synctex.gz
index 27f1989..1a926a4 100644
Binary files a/.texpadtmp/Smith&MacManes.synctex.gz and b/.texpadtmp/Smith&MacManes.synctex.gz differ
diff --git a/Smith&MacManes.pdf b/Smith&MacManes.pdf
index 9cf6990..d869ee9 100644
Binary files a/Smith&MacManes.pdf and b/Smith&MacManes.pdf differ
diff --git a/Smith&MacManes.tex b/Smith&MacManes.tex
index 70fc3f6..d8df2fb 100644
--- a/Smith&MacManes.tex
+++ b/Smith&MacManes.tex
...
% Insert Author names, affiliations and corresponding author email.
Richard Smith-Unna$^{1}$,
C. Titus Brown$^{2}$,
Matthew D MacManes $^{3}$,
\\
\bf{$^{1}$} University of Cambridge \\
\bf{$^{2}$} Michigan State University \\
\bf{$^{3}$} Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham NH, USA
diff --git a/abstract.tex b/abstract.tex
deleted file mode 100644
index f83e66f..0000000
--- a/abstract.tex
+++ /dev/null
...
No Abstract Found
diff --git a/beginflushleft_Large.tex b/beginflushleft_Large.tex
deleted file mode 100644
index 5d6f9ab..0000000
--- a/beginflushleft_Large.tex
+++ /dev/null
...
\begin{flushleft}
{\Large
\textbf{The proper care and feeding of your transcriptome}
} \\
% Insert Author names, affiliations and corresponding author email.
Richard Smith-Unna$^{1}$,
Matthew D MacManes $^{3}$,
\\
\bf{$^{1}$} University of Cambridge \\
\bf{$^{3}$} Department of Molecular, Cellular and Biomedical Sciences, University of New Hampshire, Durham NH, USA
$\ast$ E-mail: [email protected], @PeroMHC
\end{flushleft}
diff --git a/bibliography/.placeholder.md b/bibliography/.placeholder.md
deleted file mode 100644
index 3cb958d..0000000
--- a/bibliography/.placeholder.md
+++ /dev/null
...
this is a placeholder for the directory
diff --git a/bibliography/biblio.bib b/bibliography/biblio.bib
deleted file mode 100644
index eada893..0000000
--- a/bibliography/biblio.bib
+++ /dev/null
...
%% Created using Papers on Fri, 25 Jul 2014.
%% http://papersapp.com/papers/
@article{Ryan:2001vy,
author = {Ryan, KK and Altmann, J},
title = {{Selection for male choice based primarily on mate compatibility in the oldfield mouse, \emph{\textit{\textit{Peromyscus} polionotus} rhoadsi}}},
journal = {Behavioral Ecology and Sociobiology},
year = {2001},
volume = {50},
number = {5},
pages = {436--440}
}
@article{Huber:2002bs,
author = {Huber, Susanne and Millesi, Eva and Dittami, John P},
title = {{Paternal effort and its relation to mating success in the European ground squirrel}},
journal = {Animal Behaviour},
year = {2002},
volume = {63},
number = {1},
pages = {157--164},
month = jan
}
@article{NIHHMPWorkingGroup:2009do,
author = {{The NIH HMP Working Group} and Peterson, J and Garges, S and Giovanni, M and McInnes, P and Wang, L and Schloss, J A and Bonazzi, V and McEwen, J E and Wetterstrand, K A and Deal, C and Baker, C C and Di Francesco, V and Howcroft, T K and Karp, R W and Lunsford, R D and Wellington, C R and Belachew, T and Wright, M and Giblin, C and David, H and Mills, M and Salomon, R and Mullins, C and Akolkar, B and Begg, L and Davis, C and Grandison, L and Humble, M and Khalsa, J and Little, A R and Peavy, H and Pontzer, C and Portnoy, M and Sayre, M H and Starke-Reed, P and Zakhari, S and Read, J and Watson, B and Guyer, M},
title = {{The NIH Human Microbiome Project}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {12},
pages = {2317--2323},
month = dec
}
@article{Huang:2011gy,
author = {Huang, Guo-Tao and Ma, Shi-Liang and Bai, Li-Ping and Zhang, Li and Ma, Hui and Jia, Ping and Liu, Jun and Zhong, Ming and Guo, Zhi-Fu},
title = {{Signal transduction during cold, salt, and drought stresses in plants}},
journal = {Molecular biology reports},
year = {2011},
volume = {39},
number = {2},
pages = {969--987},
month = may
}
@article{Ravi:2009cz,
author = {Ravi, V and Lam, K and Tay, B H and Tay, A and Brenner, S and Venkatesh, B},
title = {{Elephant shark (Callorhinchus milii) provides insights into the evolution of Hox gene clusters in gnathostomes}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {38},
pages = {16327--16332},
month = sep
}
@article{Hayes:2003gj,
author = {Hayes, B J},
title = {{Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size}},
journal = {Genome Research},
year = {2003},
volume = {13},
number = {4},
pages = {635--643},
month = mar
}
@article{Fitzgerald:1976tj,
author = {Fitzgerald, T D},
title = {{Trail marking by larvae of the eastern tent caterpillar.}},
journal = {Science (New York, NY)},
year = {1976},
volume = {194},
number = {4268},
pages = {961--963},
month = nov
}
@article{Goncalves:2003dd,
author = {Gon{\c c}alves, Sebasti{\'a}n and Kuperman, Marcelo},
title = {{The social behavior and the evolution of sexually transmitted diseases}},
journal = {Physica A: Statistical Mechanics and its Applications},
year = {2003},
volume = {328},
number = {1-2},
pages = {225--232},
month = oct
}
@article{Nielsen:1997vy,
author = {Nielsen, EE and Hansen, MM and Loeschcke, V},
title = {{Analysis of microsatellite DNA from old scale samples of Atlantic salmon Salmo salar: A comparison of genetic composition over 60 years}},
journal = {Molecular Ecology},
year = {1997},
volume = {6},
number = {5},
pages = {487--492}
}
@article{CluttonBrock:2007cn,
author = {Clutton-Brock, T H and Isvaran, K},
title = {{Sex differences in ageing in natural populations of vertebrates}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1629},
pages = {3097--3104},
month = dec
}
@article{Manabe:2007wb,
author = {Manabe, H and Manabe, H and Ishimura, M and Ishimura, M and Shinomiya, A and Shinomiya, A and Sunobe, T and Sunobe, T},
title = {{Field evidence for bi-directional sex change in the polygynous gobiid fish Trimma okinawae}},
journal = {Journal of Fish Biology},
year = {2007},
volume = {70},
pages = {600--609}
}
@article{Moller:1998tx,
author = {Moller, AP and Ninni, P},
title = {{Sperm competition and sexual selection: a meta-analysis of paternity studies of birds}},
journal = {Behavioral Ecology and Sociobiology},
year = {1998},
volume = {43},
number = {6},
pages = {345--358}
}
@article{Radwan:2008bi,
author = {Radwan, Jacek and Tkacz, Aleksandra and Kloch, Agnieszka},
title = {{MHC and Preferences for Male Odour in the Bank Vole}},
journal = {Ethology},
year = {2008},
volume = {114},
number = {9},
pages = {827--833},
month = sep
}
@article{Takezaki:2009db,
author = {Takezaki, N and NEI, M},
title = {{Genomic Drift and Evolution of Microsatellite DNAs in Human Populations}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {8},
pages = {1835--1840},
month = jul
}
@article{Calisi:2009er,
author = {Calisi, Rebecca M and Bentley, George E},
title = {{Lab and field experiments: Are they the same animal?}},
journal = {Hormones and Behavior},
year = {2009},
volume = {56},
number = {1},
pages = {1--10},
month = jun
}
@article{Ariyaratne:2011fc,
author = {Ariyaratne, P N and Sung, W K},
title = {{PE-Assembler: \textit{de novo} assembler using short paired-end reads}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {2},
pages = {167--174},
month = jan
}
@article{Penn:1998vs,
author = {Penn, D and Potts, WK},
title = {{Chemical signals and parasite-mediated sexual selection}},
journal = {Trends In Ecology {\&} Evolution},
year = {1998},
volume = {13},
number = {10},
pages = {391--396}
}
@article{Wilson:2011hv,
author = {Wilson, David Sloan and Kauffman, Richard A and Kauffman, Richard A and Purdy, Miriam S and Purdy, Miriam S},
title = {{A program for at-risk high school students informed by evolutionary science.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {11},
pages = {e27826}
}
@article{Knudsen:2009bh,
author = {Knudsen, Bjarne and Miyamoto, Michael M},
title = {{Accurate and fast methods to estimate the population mutation rate from error prone sequences}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {247}
}
@article{Malo:2004gu,
author = {Malo, A F},
title = {{Male Fertility in Natural Populations of Red Deer Is Determined by Sperm Velocity and the Proportion of Normal Spermatozoa}},
journal = {Biology of Reproduction},
year = {2004},
volume = {72},
number = {4},
pages = {822--829},
month = dec
}
@article{Alter:2009ho,
author = {Alter, S E and Ramirez, S F and Nigenda, S and Ramirez, J U and Bracho, L R and Palumbi, S R},
title = {{Mitochondrial and Nuclear Genetic Variation across Calving Lagoons in Eastern North Pacific Gray Whales (Eschrichtius robustus)}},
journal = {Journal of Heredity},
year = {2008},
volume = {100},
number = {1},
pages = {34--46},
month = may
}
@article{Wefers:2012dm,
author = {Wefers, Benedikt and Wefers, Benedikt and Hitz, Christiane and Hitz, Christiane and H{\"o}lter, Sabine M and H{\"o}lter, Sabine M and Tr{\"u}mbach, Dietrich and Tr{\"u}mbach, Dietrich and Hansen, Jens and Hansen, Jens and Weber, Peter and P{\"u}tz, Benno and Deussing, Jan M and de Angelis, Martin Hrabe and de Angelis, Martin Hrabe and Roenneberg, Till and Roenneberg, Till and Zheng, Fang and Zheng, Fang and Alzheimer, Christian and Alzheimer, Christian and Silva, Alcino and Silva, Alcino and Wurst, Wolfgang and Wurst, Wolfgang and K{\"u}hn, Ralf and K{\"u}hn, Ralf},
title = {{MAPK Signaling Determines Anxiety in the Juvenile Mouse Brain but Depression-Like Behavior in Adults}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e35035},
month = apr
}
@article{Song:2011kb,
author = {Song, Lingyun and Song, Lingyun and Zhang, Zhancheng and Zhang, Zhancheng and Grasfeder, Linda L. and Grasfeder, Linda L. and Boyle, Alan P. and Boyle, Alan P. and Giresi, Paul G. and Giresi, Paul G. and Lee, Bum-Kyu and Lee, Bum-Kyu and Sheffield, Nathan C. and Sheffield, Nathan C. and Graef, Stefan and Graef, Stefan and Huss, Mikael and Huss, Mikael and Keefe, Damian and Keefe, Damian and Liu, Zheng and Liu, Zheng and London, Darin and London, Darin and McDaniell, Ryan M. and McDaniell, Ryan M. and Shibata, Yoichiro and Shibata, Yoichiro and Showers, Kimberly A. and Showers, Kimberly A. and Simon, Jeremy M. and Simon, Jeremy M. and Vales, Teresa and Vales, Teresa and Wang, Tianyuan and Wang, Tianyuan and Winter, Deborah and Winter, Deborah and Zhang, Zhuzhu and Zhang, Zhuzhu and Clarke, Neil D. and Clarke, Neil D. and Birney, Ewan and Birney, Ewan and Iyer, Vishwanath R. and Iyer, Vishwanath R. and Crawford, Gregory E. and Crawford, Gregory E. and Lieb, Jason D. and Lieb, Jason D. and Furey, Terrence S. and Furey, Terrence S.},
title = {{Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {10},
pages = {1757--1767}
}
@article{Sichilima:2008gi,
author = {Sichilima, A M and Bennett, N C and Faulkes, C G and Le Comber, S C},
title = {{Evolution of African mole-rat sociality: burrow architecture, rainfall and foraging in colonies of the cooperatively breeding Fukomys mechowii}},
journal = {Journal of Zoology},
year = {2008},
volume = {275},
number = {3},
pages = {276--282},
month = jul
}
@article{White:2009hm,
author = {White, Tim D and Asfaw, Berhane and Beyene, Yonas and Haile-Selassie, Yohannes and Lovejoy, C Owen and Suwa, Gen and Woldegabriel, Giday},
title = {{Ardipithecus ramidus and the paleobiology of early hominids.}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5949},
pages = {75--86},
month = oct
}
@article{Banerjee:2003vs,
author = {Banerjee, Asesh and Ghosh, Salil K},
title = {{The role of pilin glycan in neisserial pathogenesis}},
journal = {Molecular and cellular biochemistry},
year = {2003},
volume = {253},
number = {1-2},
pages = {179--190},
month = nov
}
@article{Bell:2011jk,
author = {Bell, Alison M and Robinson, Gene E},
title = {{Genomics. Behavior and the dynamic genome.}},
journal = {Science (New York, NY)},
year = {2011},
volume = {332},
number = {6034},
pages = {1161--1162},
month = jun
}
@article{Glaus:2012ek,
author = {Glaus, Peter and Glaus, Peter and Honkela, Antti and Honkela, Antti and Rattray, Magnus and Rattray, Magnus},
title = {{Identifying differentially expressed transcripts from RNA-seq data with biological variation.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {13},
pages = {1721--1728},
month = jul
}
@article{NIELSEN:1995uq,
author = {Nielsen, S and CHOU, CL and MARPLES, D and CHRISTENSEN, EI and KISHORE, BK and Knepper, MA},
title = {{Vasopressin Increases Water Permeability of Kidney Collecting Duct by Inducing Translocation of Aquaporin-Cd Water Channels to Plasma-Membrane}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1995},
volume = {92},
number = {4},
pages = {1013--1017}
}
@article{Bonhomme:2010dg,
author = {Bonhomme, M and Chevalet, C and Servin, B and Boitard, S and Abdallah, J and Blott, S and SanCristobal, M},
title = {{Detecting Selection in Population Trees: The Lewontin and Krakauer Test Extended}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {1},
pages = {241--262},
month = sep
}
@article{Price:2011fc,
author = {Price, Alkes L and Helgason, Agnar and Thorleifsson, Gudmar and Mccarroll, Steven A and Kong, Augustine and Stefansson, Kari},
title = {{Single-Tissue and Cross-Tissue Heritability of Gene Expression Via Identity-by-Descent in Related or Unrelated Individuals}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {2},
pages = {e1001317},
month = feb
}
@article{Raveh:2010ew,
author = {Raveh, Shirley and Raveh, Shirley and Heg, Dik and Dobson, F Stephen and Coltman, David W and Gorrell, Jamieson C. and Gorrell, Jamieson C. and Balmer, Adele and Balmer, Adele and Neuhaus, Peter and Neuhaus, Peter},
title = {{Mating order and reproductive success in male Columbian ground squirrels (Urocitellus columbianus)}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {3},
pages = {537--547}
}
@article{Yngvadottir:2009ip,
author = {Yngvadottir, Bryndis and MacArthur, Daniel G and Jin, Hanjun and Tyler-Smith, Chris},
title = {{The promise and reality of personal genomics}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {9},
pages = {237}
}
@article{Ellegren:2009cy,
author = {Ellegren, Hans},
title = {{A SELECTION MODEL OF MOLECULAR EVOLUTION INCORPORATING THE EFFECTIVE POPULATION SIZE}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {2},
pages = {301--305},
month = feb
}
@article{Lukas:2005gw,
author = {Lukas, D and Vigilant, L},
title = {{Reply: facts, faeces and setting standards for the study of MHC genes using noninvasive samples}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {5},
pages = {1601--1602},
month = apr
}
@article{Grant:2005kl,
author = {Grant, C A and Chapman, T and Pomiankowski, A and Fowler, K},
title = {{No detectable genetic correlation between male and female mating frequency in the stalk-eyed fly Cyrtodiopsis dalmanni}},
journal = {Heredity},
year = {2005},
volume = {95},
number = {6},
pages = {444--448},
month = aug
}
@article{Fletcher:2006ut,
author = {Fletcher, Jeffrey A and Zwick, Martin},
title = {{Unifying the theories of inclusive fitness and reciprocal altruism}},
journal = {The American Naturalist},
year = {2006},
volume = {168},
number = {2},
pages = {252--262}
}
@article{Gu:2009ff,
author = {Gu, Jingjing and Orr, Nick and Park, Stephen D and Katz, Lisa M and Sulimova, Galina and Machugh, David E and Hill, Emmeline W},
title = {{A Genome Scan for Positive Selection in Thoroughbred Horses}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {6},
pages = {e5767},
month = jun
}
@article{Anonymous:aQbGjMsM,
title = {{Motte_Map_for_Matt}}
}
@article{Renn:2008dp,
author = {Renn, S C P and Aubin-Horth, N and Hofmann, H A},
title = {{Fish and chips: functional genomics of social plasticity in an African cichlid fish}},
journal = {Journal of Experimental Biology},
year = {2008},
volume = {211},
number = {18},
pages = {3041--3056},
month = sep
}
@article{Wang:2008jc,
author = {Wang, Xu and Sun, Qi and Mcgrath, Sean D and Mardis, Elaine R and Soloway, Paul D and Clark, andrew G},
title = {{Transcriptome-Wide Identification of Novel Imprinted Genes in Neonatal Mouse Brain}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {12},
pages = {e3839},
month = dec
}
@article{Williams:2004jk,
author = {Williams, Dean A},
title = {{Female control of reproductive skew in cooperatively breeding brown jays ( Cyanocorax morio )}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {55},
number = {4},
pages = {370--380},
month = feb
}
@article{Censini:1996te,
author = {Censini, S and Lange, C and Xiang, ZY and Crabtree, JE and Ghiara, P and Borodovsky, M and Rappuoli, R and Covacci, A},
title = {{cag, a pathogenicity island of Helicobacter pylori, encodes type I-specific and disease-associated virulence factors}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1996},
volume = {93},
number = {25},
pages = {14648--14653}
}
@article{Harcourt:2007ie,
author = {Harcourt, R G and Kingston, J J and Cameron, M F and Waas, J R and Hindell, M A},
title = {{Paternity analysis shows experience, not age, enhances mating success in an aquatically mating pinniped, the Weddell seal (Leptonychotes weddellii)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {61},
number = {4},
pages = {643--652},
month = nov
}
@article{McKernan:2009cl,
author = {McKernan, K J and Peckham, H E and Costa, G L and McLaughlin, S F and Fu, Y and Tsung, E F and Clouser, C R and Duncan, C and Ichikawa, J K and Lee, C C and Zhang, Z and Ranade, S S and Dimalanta, E T and Hyland, F C and Sokolsky, T D and Zhang, L and Sheridan, A and Fu, H and Hendrickson, C L and Li, B and Kotler, L and Stuart, J R and Malek, J A and Manning, J M and Antipova, A A and Perez, D S and Moore, M P and Hayashibara, K C and Lyons, M R and Beaudoin, R E and Coleman, B E and Laptewicz, M W and Sannicandro, A E and Rhodes, M D and Gottimukkala, R K and Yang, S and Bafna, V and Bashir, A and MacBride, A and Alkan, C and Kidd, J M and Eichler, E E and Reese, M G and De La Vega, F M and Blanchard, A P},
title = {{Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {9},
pages = {1527--1541},
month = sep
}
@article{Gavin:1999tt,
author = {Gavin, TA and Sherman, PW and Sherman, PW and Yensen, E and Yensen, E and May, B},
title = {{Population genetic structure of the Northern Idaho ground squirrel (Spermophilus brunneus brunneus)}},
journal = {Journal of Mammalogy},
year = {1999},
volume = {80},
number = {1},
pages = {156--168}
}
@article{Zhang:2012go,
author = {Zhang, Lingling and Zhang, Lingling and Hou, Rui and Hou, Rui and Su, Hailin and Su, Hailin and Hu, Xiaoli and Hu, Xiaoli and Wang, Shi and Bao, Zhenmin and Bao, Zhenmin},
title = {{Network Analysis of Oyster Transcriptome Revealed a Cascade of Cellular Responses during Recovery after Heat Shock}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e35484},
month = apr
}
@article{Heer:1996tz,
author = {Heer, L},
title = {{Cooperative breeding by Alpine accentors Prunella collaris: Polygynandry, territoriality and multiple paternity}},
journal = {Journal of Ornithology},
year = {1996},
volume = {137},
number = {1},
pages = {35--51}
}
@article{White:2009fl,
author = {White, Craig R and Blackburn, Tim M and Seymour, Roger S},
title = {{PHYLOGENETICALLY INFORMED ANALYSIS OF THE ALLOMETRY OF MAMMALIAN BASAL METABOLIC RATE SUPPORTS NEITHER GEOMETRIC NOR QUARTER-POWER SCALING}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {10},
pages = {2658--2667},
month = oct
}
@article{Ledur:2009hn,
author = {Ledur, M C and Navarro, N and Perez-Enciso, M},
title = {{Large-scale SNP genotyping in crosses between outbred lines: how useful is it?}},
journal = {Heredity},
year = {2009},
volume = {105},
number = {2},
pages = {173--182},
month = oct
}
@article{STEWART:1993ul,
author = {STEWART, CB},
title = {{THE POWERS AND PITFALLS OF PARSIMONY}},
journal = {Nature},
year = {1993},
volume = {361},
number = {6413},
pages = {603--607}
}
@article{Roberts:2010fl,
author = {Roberts, E M and Pope, G R and Newson, M J F and Lolait, S J and O{\textquoteright}Carroll, A M},
title = {{The Vasopressin V1b Receptor Modulates Plasma Corticosterone Responses to Dehydration-Induced Stress}},
journal = {Journal of Neuroendocrinology},
year = {2010},
volume = {23},
number = {1},
pages = {12--19},
month = dec
}
@article{Wilson:2008uf,
author = {Wilson, James A and Wilson, James A and Kelt, Douglas A and van Vuren, Dirk H and Johnson, Michael L},
title = {{Population dynamics of small mammals in relation to production of cones in four types of forests in the northern Sierra Nevada, California}},
journal = {Southwestern Naturalist},
year = {2008},
volume = {53},
number = {3},
pages = {346--356}
}
@article{Gillespie:2008vy,
author = {Gillespie, Sara C and van Vuren, Dirk H and Kelt, Douglas A and Eadie, John M and anderson, Daniel W},
title = {{Dynamics of rodent populations in semiarid habitats in Lassen County, California}},
journal = {Western North American Naturalist},
year = {2008},
volume = {68},
number = {1},
pages = {76--82}
}
@article{Simmons:2010dy,
author = {Simmons, Mark P and M{\"u}ller, Kai F and Norton, andrew P},
title = {{Alignment of, and phylogenetic inference from, random sequences: The susceptibility of alternative alignment methods to creating artifactual resolution and support}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2010},
volume = {57},
number = {3},
pages = {1004--1016},
month = dec
}
@article{DeYoung:2009vj,
author = {DeYoung, Randy W and Demarais, Stephen and Gee, Kenneth L and Honeycutt, Rodney L and Hellickson, Mickey W and Gonzales, Robert A},
title = {{Molecular Evaluation of the White-Tailed Deer (\emph{\textit{Odocoileus virginianus}}) Mating System}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {4},
pages = {946--953}
}
@article{Davis:2006ha,
author = {Davis, Leslie A and Roalson, Eric H and Cornell, K L and Mcclanahan, Kara D and Webster, Michael S},
title = {{Genetic divergence and migration patterns in a North American passerine bird: implications for evolution and conservation}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {8},
pages = {2141--2152},
month = may
}
@article{Nickrent:2004df,
author = {Nickrent, Daniel L and Blarer, Albert and Qiu, Yin-Long and Vidal-Russell, Romina and anderson, Frank E},
journal = {BMC Evolutionary Biology},
year = {2004},
volume = {4},
number = {1},
pages = {40}
}
@article{Anonymous:9QNUEe0T,
title = {{Dehydration reverses vasopressin antagonist-induced diuresis and aquaporin-2 downregulation in rats}},
year = {1998},
pages = {1--10},
month = aug
}
@article{Chavez:2009tl,
author = {Chavez, Cuauhtemoc and Ceballos, Gerardo},
title = {{Implications for Conservation of the Species Diversity and Population Dynamics of Small Mammals in an Isolated Reserve in Mexico City}},
journal = {Natural Areas Journal},
year = {2009},
volume = {29},
number = {1},
pages = {27--41}
}
@article{Johnsen:1998uw,
author = {Johnsen, A and Lifjeld, JT and Rohde, PA and Primmer, CR and Ellegren, H},
title = {{Sexual conflict over fertilizations: female bluethroats escape male paternity guards}},
journal = {Behavioral Ecology and Sociobiology},
year = {1998},
volume = {43},
number = {6},
pages = {401--408}
}
@article{Kim:2009ch,
author = {Kim, T K and Thomas, S M and Ho, M and Sharma, S and Reich, C I and Frank, J A and Yeater, K M and Biggs, D R and Nakamura, N and Stumpf, R and Leigh, S R and Tapping, R I and Blanke, S R and Slauch, J M and Gaskins, H R and Weisbaum, J S and Olsen, G J and Hoyer, L L and Wilson, B A},
title = {{Heterogeneity of Vaginal Microbial Communities within Individuals}},
journal = {Journal of Clinical Microbiology},
year = {2009},
volume = {47},
number = {4},
pages = {1181--1189},
month = apr
}
@article{Kerr:2009cy,
author = {L{\"u}pold, Stefan and Linz, George M and Rivers, James W and Westneat, David F and Birkhead, Tim R},
title = {{Sperm competition selects beyond relative testes size in birds.}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {2},
pages = {391--402},
month = feb
}
@article{Mukherjee:2009wj,
author = {Mukherjee, S and Sarkar-Roy, N and Wagener, D and Majumder, P},
title = {{Signatures of natural selection are not uniform across genes of innate immune system, but purifying {\ldots}}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009}
}
@article{Wittenberger:1980tu,
author = {Wittenberger, J F and Tilson, R L},
title = {{The evolution of monogamy: Hypotheses and evidence}},
journal = {Annual Review of Ecology and Systematics},
year = {1980},
volume = {11},
pages = {197--232}
}
@article{Wang:2009dz,
author = {Wang, Guiming and Wolff, Jerry O and Vessey, Stephen H and Slade, Norman A and Witham, Jack W and Merritt, Joseph F and Hunter, Jr, Malcolm L and Elias, Susan P},
title = {{Comparative population dynamics of \textit{Peromyscus} leucopus in North America: influences of climate, food, and density dependence}},
journal = {Population Ecology},
year = {2008},
volume = {51},
number = {1},
pages = {133--142},
month = aug
}
@article{Armstrong:2000ur,
author = {Armstrong, HM and Robertson, A},
title = {{Energetics of free-ranging large herbivores: when should costs affect foraging behaviour?}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2000},
volume = {78},
number = {9},
pages = {1604--1615}
}
@article{Lappan:2008iq,
author = {Lappan, Susan},
title = {{Male care of infants in a siamang (Symphalangus syndactylus) population including socially monogamous and polyandrous groups}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {8},
pages = {1307--1317},
month = feb
}
@article{Tzschentke:1998uq,
author = {Tzschentke, T M},
title = {{Measuring reward with the conditioned place preference paradigm: a comprehensive review of drug effects, recent progress and new issues}},
journal = {Progress in Neurobiology},
year = {1998},
volume = {56},
number = {6},
pages = {613--672},
month = dec
}
@article{Bansal:2010kt,
author = {Bansal, V},
title = {{A statistical method for the detection of variants from next-generation resequencing of DNA pools}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {12},
pages = {i318--i324},
month = jun
}
@article{Gutman:2006kf,
author = {Gutman, R},
title = {{Defending body mass during food restriction in Acomys russatus: a desert rodent that does not store food}},
journal = {AJP: Regulatory, Integrative and Comparative Physiology},
year = {2005},
volume = {290},
number = {4},
pages = {R881--R891},
month = dec
}
@article{Locatello:2006ds,
author = {Locatello, L and Rasotto, M B and Evans, J P and Pilastro, A},
title = {{Colourful male guppies produce faster and more viable sperm}},
journal = {Journal of Evolutionary Biology},
year = {2006},
volume = {19},
number = {5},
pages = {1595--1602},
month = sep
}
@article{Anonymous:2012jz,
author = {Miller, Hilary C and Biggs, Patrick J and Voelckel, Claudia and Nelson, Nicola J},
title = {{\textit{De novo} sequence assembly and characterisation of a partial transcriptome for an evolutionarily distinct reptile, the tuatara (Sphenodon punctatus)}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {439}
}
@article{Kelleher:2011fy,
author = {Kelleher, E S and Clark, N L and Markow, T A},
title = {{Diversity-Enhancing Selection Acts on a Female Reproductive Protease Family in Four Subspecies of \textit{Drosophila} mojavensis}},
journal = {Genetics},
year = {2011},
volume = {187},
number = {3},
pages = {865--876},
month = mar
}
@article{Ostfeld:2012dv,
author = {Ostfeld, R S and Keesing, Felicia and Keesing, Felicia},
title = {{Effects of Host Diversity on Infectious Disease}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2012},
volume = {43},
number = {1},
pages = {157--182},
month = dec
}
@article{Das:2010ir,
author = {Das, S and Nikolaidis, N and Goto, H and McCallister, C and Li, J and Hirano, M and Cooper, M D},
title = {{Comparative Genomics and Evolution of the Alpha-Defensin Multigene Family in Primates}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {10},
pages = {2333--2343},
month = sep
}
@article{Bell:2009df,
author = {Bell, Alison M and Hankison, Shala J and Laskowski, Kate L},
title = {{The repeatability of behaviour: a meta-analysis}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {4},
pages = {771--783},
month = apr
}
@article{Westneat:2006fd,
author = {Westneat, David F and Westneat, David F},
title = {{No evidence of current sexual selection on sexually dimorphic traits in a bird with high variance in mating success}},
journal = {The American Naturalist},
year = {2006},
volume = {167},
number = {6},
pages = {E171--E189}
}
@article{Koressaar:2009jw,
author = {Koressaar, T and Joers, K and Remm, M},
title = {{Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {11},
pages = {1349--1355},
month = may
}
@article{Bamshad:2002hs,
author = {Bamshad, M J},
title = {{A strong signature of balancing selection in the 5' cis-regulatory region of CCR5}},
journal = {Proceedings of the National Academy of Sciences},
year = {2002},
volume = {99},
number = {16},
pages = {10539--10544},
month = jul
}
@article{David:2012hy,
author = {David, M and David, M and Auclair, Y and Auclair, Y and Dall, S R X and Dall, S R X and Cezilly, F},
title = {{Pairing context determines condition-dependence of song rate in a monogamous passerine bird}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1753},
pages = {20122177--20122177},
month = dec
}
@article{Crawford:2010ck,
author = {Crawford, Nicholas G and Crawford, Nicholas G},
title = {{smogd: software for the measurement of genetic diversity}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {3},
pages = {556--557}
}
@article{Ingvarsson:2010ga,
author = {Ingvarsson, P K},
title = {{Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {3},
pages = {650--660},
month = feb
}
@article{Sicotte:2011dl,
author = {Sicotte, Hugues and Sicotte, Hugues and Rider, David N and Rider, David N and Poland, Gregory A and Poland, Gregory A and Dhiman, Neelam and Dhiman, Neelam and Kocher, Jean-Pierre A and Kocher, Jean-Pierre A},
title = {{SNPPicker: High quality tag SNP selection across multiple populations.}},
journal = {BMC Bioinformatics},
year = {2011},
volume = {12},
number = {1},
pages = {129},
month = may
}
@article{Danilov:2010kq,
author = {Danilov, Sergei M and Kalinin, Sergey and Chen, Zhenlong and Vinokour, Elena I and Nesterovitch, andrew B and Schwartz, David E and Gribouval, Olivier and Gubler, Marie Claire and Minshall, Richard D},
title = {{Angiotensin I-Converting Enzyme Gln1069Arg Mutation Impairs Trafficking to the Cell Surface Resulting in Selective Denaturation of the C-Domain}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {5},
pages = {e10438},
month = may
}
@incollection{Lacey:2000we,
author = {Lacey, Eileen A},
title = {{Life Underground\textbf{: }The Biology of Subterranean Rodents}},
year = {2000},
editor = {Lacey, Eileen A and Patton, James L and Cameron, G},
pages = {257--296},
publisher = {University of Chicago Press},
address = {Chicago}
}
@article{Simmons:2007fg,
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {21},
month = nov
}
@article{Feinberg:2011gf,
author = {Feinberg, D R and Feinberg, D R and Debruine, L M and Jones, B C and Little, A C and O{\textquoteright}Connor, J J M and O{\textquoteright}Connor, J J M and Tigue, C C and Tigue, C C},
title = {{Women{\textquoteright}s self-perceived health and attractiveness predict their male vocal masculinity preferences in different directions across short- and long-term relationship contexts}},
journal = {Behavioral Ecology and Sociobiology},
year = {2011},
month = nov
}
@article{Fraser:2002vg,
author = {Fraser, GS and JONES, IL and HUNTER, FM},
title = {{Male-female differences in parental care in monogamous Crested Auklets}},
journal = {The Condor},
year = {2002},
volume = {104},
number = {2},
pages = {413--423}
}
@article{Townsend:2009cy,
author = {Townsend, andrea K and Clark, Anne B and Mcgowan, Kevin J},
title = {{Direct Benefits and Genetic Costs of Extrapair Paternity for Female American Crows ( Corvus brachyrhynchos)}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {1},
pages = {E1--E9},
month = jan
}
@article{Alcaide:2008dh,
author = {Alcaide, Miguel and Edwards, Scott V and Cadah{\'\i}a, Luis and Cadah{\'\i}a, Luis and Negro, Juan J},
title = {{MHC class I genes of birds of prey: isolation, polymorphism and diversifying selection}},
journal = {Conservation Genetics},
year = {2008},
volume = {10},
number = {5},
pages = {1349--1355},
month = aug
}
@article{Fjerdingstad:2006ud,
author = {Fjerdingstad, EJ and Crozier, RH},
title = {{The evolution of worker caste diversity in social insects}},
journal = {The American Naturalist},
year = {2006},
volume = {167},
number = {3},
pages = {390--400}
}
@article{Schmitt:2009ku,
author = {Schmitt, Imke and Prado, Ruth del and Grube, Martin and Lumbsch, H Thorsten},
title = {{Repeated evolution of closed fruiting bodies is linked to ascoma development in the largest group of lichenized fungi (Lecanoromycetes, Ascomycota)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2009},
volume = {52},
number = {1},
pages = {34--44},
month = jul
}
@article{Poiani:2000uf,
author = {Poiani, A and Wilks, C},
title = {{Sexually transmitted diseases: A possible cost of promiscuity in birds?}},
journal = {Auk},
year = {2000},
volume = {117},
number = {4},
pages = {1061--1065}
}
@article{Forstmeier:2009ge,
author = {Forstmeier, Wolfgang and Burger, Claudia and Temnow, Katja and Deregnaucourt, Sebastien},
title = {{THE GENETIC BASIS OF ZEBRA FINCH VOCALIZATIONS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {8},
pages = {2114--2130},
month = aug
}
@article{Gutenkunst:2009gs,
author = {Gutenkunst, Ryan N and Hernandez, Ryan D and Williamson, Scott H and Bustamante, Carlos D},
title = {{Inferring the Joint Demographic History of Multiple Populations from Multidimensional SNP Frequency Data}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {10},
pages = {e1000695},
month = oct
}
@article{Anonymous:iPoV0gRw,
title = {{Stat Sci 1999 Schwarz}},
year = {2000},
pages = {30},
month = mar
}
@article{Harvey:2000ve,
author = {Harvey, IF and Harvey, IF and Parker, GA},
title = {{'Sloppy' sperm mixing and intraspecific variation in sperm precedence (P-2) patterns}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1461},
pages = {2537--2542}
}
@article{Nardini:2013cv,
author = {Nardini, Luisa and Christian, Riann N and Coetzer, Nanette and Koekemoer, Lizette L},
title = {{DDT and pyrethroid resistance in Anopheles arabiensis from South Africa}},
journal = {Parasites {\&} Vectors},
year = {2013},
volume = {6},
number = {1},
pages = {1--1},
month = aug
}
@article{Bhardwaj:2013fh,
author = {Bhardwaj, Jyoti and Chauhan, Rohit and Swarnkar, Mohit Kumar and Chahota, Rakesh Kumar and Singh, Anil Kumar and Shankar, Ravi and Yadav, Sudesh Kumar},
title = {{Comprehensive transcriptomic study on horse gram (\textit{Macrotyloma uniflorum}): \textit{De novo} assembly, functional characterization and comparative analysis in relation to drought stress}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {647}
}
@article{Michel:2010gx,
author = {Michel, Sven and Liang, Liming and Depner, Martin and Klopp, Norman and Ruether, andreas and Kumar, Ashish and Schedel, Michaela and Vogelberg, Christian and von Mutius, Erika and von Berg, andrea and Bufe, Albrecht and Rietschel, Ernst and Heinzmann, andrea and Laub, Otto and Simma, Burkhard and Frischer, Thomas and Genuneit, Jon and Gut, Ivo G and Schreiber, Stefan and Lathrop, Mark and Illig, Thomas and Kabesch, Michael},
title = {{Unifying Candidate Gene and GWAS Approaches in Asthma}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {11},
pages = {e13894},
month = nov
}
@article{Richardson:2001wr,
author = {Richardson, DS and Burke, T},
title = {{Extrapair paternity and variance in reproductive success related to breeding density in Bullock's orioles}},
journal = {Animal Behaviour},
year = {2001},
volume = {62},
pages = {519--525}
}
@article{Chamala:2013dr,
author = {Chamala, S and Chanderbali, A S and Der, J P and Lan, T and Walts, B and Albert, V A and dePamphilis, C W and Leebens-Mack, J and Rounsley, S and Schuster, S C and Wing, R A and Xiao, N and Moore, R and Soltis, P S and Soltis, D E and Barbazuk, W B},
title = {{Assembly and Validation of the Genome of the Nonmodel Basal Angiosperm Amborella}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6165},
pages = {1516--1517},
month = dec
}
@article{Ashelford:2005wo,
author = {Ashelford, KE and Chuzhanova, NA and Fry, JC and Jones, AJ and Weightman, AJ},
title = {{At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies}},
journal = {Applied and Environmental Microbiology},
year = {2005},
volume = {71},
number = {12},
pages = {7724--7736}
}
@article{Hofmann:2010ex,
author = {Hofmann, Christopher M and O'Quin, Kelly E and Smith, Adam R and Carleton, Karen L},
title = {{Plasticity of opsin gene expression in cichlids from Lake Malawi}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {10},
pages = {2064--2074},
month = mar
}
@article{Sargsyan:2008hu,
author = {Sargsyan, Ori and Wakeley, John},
title = {{A coalescent process with simultaneous multiple mergers for approximating the gene genealogies of many marine organisms}},
journal = {Theoretical Population Biology},
year = {2008},
volume = {74},
number = {1},
pages = {104--114},
month = aug
}
@article{THOMAS:1979wj,
author = {THOMAS, JA and THOMAS, JA and BIRNEY, EC and BIRNEY, EC},
title = {{PARENTAL CARE AND MATING SYSTEM OF THE PRAIRIE VOLE, MICROTUS-OCHROGASTER}},
journal = {Behavioral Ecology and Sociobiology},
year = {1979},
volume = {5},
number = {2},
pages = {171--186}
}
@article{Jacot:2009dv,
author = {Jacot, Alain and Valcu, Mihai and van Oers, Kees and Kempenaers, Bart},
title = {{Experimental nest site limitation affects reproductive strategies and parental investment in a hole-nesting passerine}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {5},
pages = {1075--1083},
month = may
}
@article{Iskow:2012kt,
author = {Iskow, Rebecca C and Iskow, Rebecca C and Gokcumen, Omer and Abyzov, Alexej and Abyzov, Alexej and Malukiewicz, Joanna and Malukiewicz, Joanna and Zhu, Qihui and Sukumar, Ann T and Sukumar, Ann T and Pai, Athma A and Mills, Ryan E and Habegger, Lukas and Cusanovich, Darren A and Cusanovich, Darren A and Rubel, Meagan A and Rubel, Meagan A and Perry, George H and Perry, George H and Gerstein, Mark and Stone, Anne C and Stone, Anne C and Gilad, Yoav and Lee, Charles},
title = {{Regulatory element copy number differences shape primate expression profiles.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = jul
}
@article{JAMIESON:1987tl,
author = {JAMIESON, IG and CRAIG, JL},
title = {{DOMINANCE AND MATING IN A COMMUNAL POLYGYNANDROUS BIRD - COOPERATION OR INDIFFERENCE TOWARDS MATING COMPETITORS}},
journal = {Ethology},
year = {1987},
volume = {75},
number = {4},
pages = {317--327}
}
@article{Ward:2008dl,
author = {Ward, Paul I and Wilson, Alastair J and Reim, Constanze},
title = {{A cost of cryptic female choice in the yellow dung fly}},
journal = {Genetica},
year = {2007},
volume = {134},
number = {1},
pages = {63--67},
month = sep
}
@article{Wasik:2010gm,
author = {Wasik, Bethany R and Rose, Debra J and Moczek, Armin P},
title = {{Beetle horns are regulated by the Hox gene, Sex combs reduced, in a species- and sex-specific manner}},
journal = {Evolution {\&} Development},
year = {2010},
volume = {12},
number = {4},
pages = {353--362},
month = jul
}
@article{Lance:2001jg,
author = {Lance, Stacey L and Chao, Lin},
title = {{Sperm-expenditure strategies: the role of mating order, sperm precedence, and non-optimal behavior}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2001},
volume = {79},
number = {7},
pages = {1322--1329}
}
@article{Santure:2010hl,
author = {Santure, Anna W and Stapley, Jessica and Ball, Alexander D and Birkhead, Tim R and Burke, Terry and Slate, Jon},
title = {{On the use of large marker panels to estimate inbreeding and relatedness: empirical and simulation studies of a pedigreed zebra finch population typed at 771 SNPs}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {7},
pages = {1439--1451},
month = apr
}
@article{Kutikhin:2011ey,
author = {Kutikhin, Anton G. and Kutikhin, Anton G.},
title = {{Impact of Toll-like receptor 4 polymorphisms on risk of cancer}},
journal = {Human immunology},
year = {2011},
volume = {72},
number = {2},
pages = {193--206}
}
@article{Slatkin:2009ix,
author = {Slatkin, M},
title = {{Epigenetic Inheritance and the Missing Heritability Problem}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {3},
pages = {845--850},
month = jul
}
@article{Bohm:2008fx,
author = {B{\"o}hm, Monika and Palphramand, Kate L and Newton-Cross, Geraldine and Hutchings, Michael R and White, Piran C L},
title = {{Dynamic interactions among badgers: implications for sociality and disease transmission}},
journal = {Journal of Animal Ecology},
year = {2008},
volume = {77},
number = {4},
pages = {735--745},
month = jul
}
@article{Ukkonen:1992uv,
author = {Ukkonen, Esko},
title = {{Approximate string-matching with q-grams and maximal matches}},
journal = {Theoretical computer science},
year = {1992},
volume = {92},
number = {1},
pages = {191--211}
}
@article{Barrett:1978dh,
author = {Barrett, J M and Barrett, J M and Kriz, W and Kriz, W and Kaissling, B and Kaissling, B and De Rouffignac, C and De Rouffignac, C},
title = {{The ultrastructure of the nephrons of the desert rodent (Psammomys obesus) kidney. II. Thin limbs of Henle of long-looped nephrons.}},
journal = {The American journal of anatomy},
year = {1978},
volume = {151},
number = {4},
pages = {499--514},
month = apr
}
@article{Kern:2010ksa,
author = {Kern, A D and Haussler, D},
title = {{A Population Genetic Hidden Markov Model for Detecting Genomic Regions Under Selection}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {7},
pages = {1673--1685},
month = jun
}
@article{Okazaki:2002jm,
author = {Okazaki, Y and Furuno, M and Kasukawa, T and Adachi, J and Bono, H and Kondo, S and Nikaido, I and Osato, N and Saito, R and Suzuki, H and Yamanaka, I and Kiyosawa, H and Yagi, K and Tomaru, Y and Hasegawa, Y and Nogami, A and Schonbach, C and Gojobori, T and Baldarelli, R and Hill, D P and Bult, C and Hume, D A and Quackenbush, J and Schriml, L M and Kanapin, A and Matsuda, H and Batalov, S and Beisel, K W and Blake, J A and Bradt, D and Brusic, V and Chothia, C and Corbani, L E and Cousins, S and Dalla, E and Dragani, T A and Fletcher, C F and Forrest, A and Frazer, K S and Gaasterland, T and Gariboldi, M and Gissi, C and Godzik, A and Gough, J and Grimmond, S and Gustincich, S and Hirokawa, N and Jackson, I J and Jarvis, E D and Kanai, A and Kawaji, H and Kawasawa, Y and Kedzierski, R M and King, B L and Konagaya, A and Kurochkin, I V and Lee, Y and Lenhard, B and Lyons, P A and Maglott, D R and Maltais, L and Marchionni, L and McKenzie, L and Miki, H and Nagashima, T and Numata, K and Okido, T and Pavan, W J and Pertea, G and Pesole, G and Petrovsky, N and Pillai, R and Pontius, J U and Qi, D and Ramachandran, S and Ravasi, T and Reed, J C and Reed, D J and Reid, J and Ring, B Z and Ringwald, M and Sandelin, A and Schneider, C and Semple, C A M and Setou, M and Shimada, K and Sultana, R and Takenaka, Y and Taylor, M S and Teasdale, R D and Tomita, M and Verardo, R and Wagner, L and Wahlestedt, C and Wang, Y and Watanabe, Y and Wells, C and Wilming, L G and Wynshaw-Boris, A and Yanagisawa, M and Yang, I and Yang, L and Yuan, Z and Zavolan, M and Zhu, Y and Zimmer, A and Carninci, P and Hayatsu, N and Hirozane-Kishikawa, T and Konno, H and Nakamura, M and Sakazume, N and Sato, K and Shiraki, T and Waki, K and Kawai, J and Aizawa, K and Arakawa, T and Fukuda, S and Hara, A and Hashizume, W and Imotani, K and Ishii, Y and Itoh, M and Kagawa, I and Miyazaki, A and Sakai, K and Sasaki, D and Shibata, K and Shinagawa, A and Yasunishi, A and Yoshino, M and Waterston, R and Lander, E S and Rogers, J and Birney, E and Hayashizaki, Y},
title = {{Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs}},
journal = {Nature},
year = {2002},
volume = {420},
number = {6915},
pages = {563--573},
month = dec
}
@article{Gilby:2011tg,
author = {Gilby, AJ and Mainwaring, MC},
title = {{The adaptive benefit of hatching asynchrony in wild zebra finches}},
journal = {Animal Behaviour},
year = {2011}
}
@article{Sole:2008fk,
author = {Sole, C L and Bastos, A D S and Scholtz, C H},
title = {{Intraspecific Patterns of Mitochondrial Variation in Natural Population Fragments of a Localized Desert Dung Beetle Species, Pachysoma gariepinum (Coleoptera: Scarabaeidae)}},
journal = {Journal of Heredity},
year = {2008},
volume = {99},
number = {5},
pages = {464--475},
month = may
}
@article{Poland:2011kr,
author = {Poland, Veronica and Eubel, Holger and King, Michaela and Solheim, Cory and Harvey Millar, A and Baer, Boris},
title = {{Stored sperm differs from ejaculated sperm by proteome alterations associated with energy metabolism in the honeybee Apis mellifera}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {12},
pages = {2643--2654},
month = feb
}
@article{TomatoGenomeConsortium:2012cn,
author = {{Tomato Genome Consortium} and {Tomato Genome Consortium}},
title = {{The tomato genome sequence provides insights into fleshy fruit evolution.}},
journal = {Nature},
year = {2012},
volume = {485},
number = {7400},
pages = {635--641},
month = may
}
@article{Reznick:1996vz,
author = {Reznick, DN and Butler, MJ and Rodd, FH and Ross, P},
title = {{Life-history evolution in guppies (\emph{Poecilia reticulata}) 6. Differential mortality as a mechanism for natural selection}},
journal = {Evolution},
year = {1996},
volume = {50},
number = {4},
pages = {1651--1660}
}
@article{Summerer:2009bp,
author = {Summerer, Daniel},
title = {{Enabling technologies of genomic-scale sequence enrichment for targeted high-throughput sequencing}},
journal = {Genomics},
year = {2009},
volume = {94},
number = {6},
pages = {363--368},
month = dec
}
@article{Donnelly:2001vw,
author = {Donnelly, MJ and Licht, MC and Lehmann, T},
title = {{Evidence for recent population expansion in the evolutionary history of the malaria vectors Anopheles arabiensis and Anopheles gambiae}},
journal = {Molecular Biology and Evolution},
year = {2001},
volume = {18},
number = {7},
pages = {1353--1364}
}
@article{Doolittle:2006gi,
author = {Doolittle, W Ford and Papke, R Thane},
title = {{Genomics and the bacterial species problem.}},
journal = {Genome Biology},
year = {2006},
volume = {7},
number = {9},
pages = {116}
}
@article{Haas:2013jq,
author = {Haas, Brian J and Papanicolaou, Alexie and Yassour, Moran and Grabherr, Manfred and Blood, Philip D and Bowden, Joshua and Couger, Matthew Brian and Eccles, David and Li, Bo and Lieber, Matthias and MacManes, Matthew D and Ott, Michael and Orvis, Joshua and Pochet, Nathalie and Strozzi, Francesco and Weeks, Nathan and Westerman, Rick and William, Thomas and Dewey, Colin N and Henschel, Robert and Leduc, Richard D and Friedman, Nir and Regev, Aviv},
title = {{\textit{De novo} transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.}},
journal = {Nature protocols},
year = {2013},
volume = {8},
number = {8},
pages = {1494--1512},
month = aug
}
@article{Alonzo:2010je,
author = {Alonzo, Suzanne H},
title = {{Social and coevolutionary feedbacks between mating and parental investment}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {2},
pages = {99--108},
month = feb
}
@article{BONNER:1958vk,
author = {BONNER, JT},
title = {{THE RELATION OF SPORE FORMATION TO RECOMBINATION}},
journal = {The American Naturalist},
year = {1958},
volume = {92},
number = {865},
pages = {193--200}
}
@article{Levitis:2009gr,
author = {Levitis, Daniel A and Lidicker, Jr., William Z and Freund, Glenn},
title = {{Behavioural biologists do not agree on what constitutes behaviour}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {1},
pages = {103--110},
month = jul
}
@article{Olsson:2010fz,
author = {Olsson, Mats and WAPSTRA, ERIK and Schwartz, Tonia and Madsen, Thomas and Ujvari, Beata and Uller, Tobias},
title = {{IN HOT PURSUIT: FLUCTUATING MATING SYSTEM AND SEXUAL SELECTION IN SAND LIZARDS}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {2},
pages = {574--583},
month = nov
}
@article{Nielsen:1995uq,
author = {Nielsen, S and Chou, C L and Marples, D and Christensen, E I and Kishore, B K and Knepper, M A},
title = {{Vasopressin increases water permeability of kidney collecting duct by inducing translocation of aquaporin-CD water channels to plasma membrane}},
journal = {PNAS},
year = {1995},
volume = {92},
number = {4},
pages = {1013--1017},
month = feb
}
@article{Malenke:2013jv,
author = {Malenke, J R and Milash, B and Miller, A W and Dearing, M D},
title = {{Transcriptome sequencing and microarray development for the woodrat ( Neotoma spp.): custom genetic tools for exploring herbivore ecology}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = mar
}
@article{Milot:2011jd,
author = {Milot, Emmanuel and Milot, Emmanuel and Mayer, Francine M and Mayer, Francine M and Nussey, Daniel H and Boisvert, Mireille and Boisvert, Mireille and Pelletier, Fanie and R{\'e}ale, Denis},
title = {{Evidence for evolution in response to natural selection in a contemporary human population.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {41},
pages = {17040--17045},
month = oct
}
@article{GuiraoRico:2009hm,
author = {Guirao-Rico, S and Aguade, M},
title = {{Positive Selection Has Driven the Evolution of the \textit{Drosophila} Insulin-Like Receptor (InR) at Different Timescales}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {8},
pages = {1723--1732},
month = jul
}
@article{Dodd:1978vl,
author = {Dodd, B E and Dodd, B E and Lincoln, P J and Lincoln, P J},
title = {{An analysis of 1,556 cases of doubtful paternity submitted for blood group investigation.}},
journal = {Medicine, science, and the law},
year = {1978},
volume = {18},
number = {3},
pages = {185--190},
month = jul
}
@article{McCracken:2009ep,
author = {Mccracken, K G and Bulgarella, M and Johnson, K P and Kuhner, M K and Trucco, J and Valqui, T H and Wilson, R E and Peters, J L},
title = {{Gene Flow in the Face of Countervailing Selection: Adaptation to High-Altitude Hypoxia in the ~A Hemoglobin Subunit of Yellow-Billed Pintails in the andes}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {4},
pages = {815--827},
month = jan
}
@article{Anonymous:cGmLl40J,
title = {{D300 Users Manual}},
year = {2007},
pages = {448},
month = sep
}
@article{Babonis:2011ki,
author = {Babonis, Leslie S and Evans, David H},
title = {{Morphological and biochemical evidence for the evolution of salt glands in snakes.}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2011},
volume = {160},
number = {3},
pages = {400--411},
month = nov
}
@article{Hodgkinson:2011ir,
author = {Hodgkinson, Alan and Eyre-Walker, Adam},
title = {{Variation in the mutation rate across mammalian genomes.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {11},
pages = {756--766},
month = nov
}
@article{WHILE:2010iz,
author = {WHILE, GEOFFREY M and WHILE, GEOFFREY M and Uller, Tobias and Uller, Tobias and WAPSTRA, ERIK and WAPSTRA, ERIK},
title = {{Variation in social organization influences the opportunity for sexual selection in a social lizard}},
journal = {Molecular Ecology},
year = {2010},
volume = {20},
number = {4},
pages = {844--852},
month = dec
}
@article{Looso:2013eu,
author = {Looso, Mario and Preussner, Jens and Sousounis, Konstantinos and Bruckskotten, Marc and Michel, Christian S and Lignelli, Ettore and Reinhardt, Richard and H{\"o}ffner, Sabrina and Kr{\"u}ger, Marcus and Tsonis, Panagiotis A and Borchardt, Thilo and Braun, Thomas},
title = {{A \textit{de novo} assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration.}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {2},
pages = {R16},
month = feb
}
@article{JACKSON:1980tv,
author = {JACKSON, LL and HADLEY, NF and BLOMQUIST, GJ},
title = {{Epicuticular Lipids of the Desert Tenebrionid Beetle, Eleodes-Armata - Identification of the Branched Hydrocarbons}},
journal = {Insect Biochemistry},
year = {1980},
volume = {10},
number = {4},
pages = {399--402}
}
@article{Miller:2008uw,
author = {Miller, Jacqueline R and Engstrom, Mark D},
title = {{THE RELATIONSHIPS OF MAJOR LINEAGES WITHIN PEROMYSCINE RODENTS: A MOLECULAR PHYLOGENETIC HYPOTHESIS AND SYSTEMATIC REAPPRAISAL}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {5},
pages = {1279--1295}
}
@article{Brown:2008jw,
author = {Brown, Charles R and Brown, Mary Bomberger and Brazeal, Kathleen R},
title = {{Familiarity with breeding habitat improves daily survival in colonial~cliff swallows}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {4},
pages = {1201--1210},
month = oct
}
@book{Levine:1988wi,
author = {Levine, N E and Levine, N E},
title = {{The dynamics of polyandry: kinship, domesticity, and population on the Tibetan border.}},
publisher = {University of Chicago Press},
year = {1988}
}
@article{Birkhead:1998tm,
author = {Birkhead, TR},
title = {{Cryptic female choice: Criteria for establishing female sperm choice}},
journal = {Evolution},
year = {1998},
volume = {52},
number = {4},
pages = {1212--1218}
}
@article{Li:2009db,
author = {Li, R and Li, Y and Fang, X and Yang, H and Wang, J and Kristiansen, K},
title = {{SNP detection for massively parallel whole-genome resequencing}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {6},
pages = {1124--1132},
month = jun
}
@article{Tsang:2008im,
author = {Tsang, L M and Ma, K Y and Ahyong, S T and Chan, T Y and Chu, K H},
title = {{Phylogeny of Decapoda using two nuclear protein-coding genes: Origin and evolution of the Reptantia}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2008},
volume = {48},
number = {1},
pages = {359--368},
month = jul
}
@article{Anonymous:2013ie,
author = {Yek, Sze H and Boomsma, Jacobus J and Schi{\o}tt, Morten},
title = {{Differential gene expression in Acromyrmexleaf-cutting ants after challenges with two fungal pathogen s}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {8},
pages = {2173--2187},
month = mar
}
@article{Axelsson:2009cv,
author = {Axelsson, E and Ellegren, H},
title = {{Quantification of Adaptive Evolution of Genes Expressed in Avian Brain and the Population Size Effect on the Efficacy of Selection}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {5},
pages = {1073--1079},
month = apr
}
@article{Cezilly:2012ca,
author = {Cezilly, F and Cezilly, F and Favrat, A and Favrat, A and Perrot-Minnot, M J and Perrot-Minnot, M J},
title = {{Multidimensionality in parasite-induced phenotypic alterations: ultimate versus proximate aspects}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {27--35},
month = dec
}
@article{Mudge:2013gq,
author = {Mudge, J M and Frankish, A and Harrow, J},
title = {{Functional transcriptomics in the post-ENCODE era}},
journal = {Genome Research},
year = {2013},
volume = {23},
number = {12},
pages = {1961--1973},
month = dec
}
@techreport{Love:2014cf,
author = {Love, M I and Huber, W and anders, S},
title = {{Moderated estimation of fold change and dispersion for RNA-Seq data with DESeq2}},
year = {2014},
month = feb
}
@article{ShohatOphir:2012bc,
author = {Shohat-Ophir, G and Shohat-Ophir, G and Kaun, K R and Kaun, K R and Azanchi, R and Azanchi, R and Heberlein, U and Heberlein, U},
title = {{Sexual Deprivation Increases Ethanol Intake in \textit{Drosophila}}},
journal = {Science (New York, NY)},
year = {2012},
volume = {335},
number = {6074},
pages = {1351--1355},
month = mar
}
@article{Yang:2013ck,
author = {Yang, Xiao and Chockalingam, Sriram P and Aluru, Srinivas},
title = {{A survey of error-correction methods for next-generation sequencing.}},
journal = {Briefings In Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {56--66},
month = jan
}
@article{Becker:2009jz,
author = {Becker, L and Nieberg, C and Jahreis, K and Peters, E},
title = {{MHC class II variation in the endangered European mink Mustela lutreola (L. 1761){\textemdash}consequences for species conservation}},
journal = {Immunogenetics},
year = {2009},
volume = {61},
number = {4},
pages = {281--288},
month = mar
}
@article{Parada:2011eu,
author = {Parada, andres and Parada, andres and D'Elia, Guillermo and D'Elia, Guillermo and Bidau, Claudio J. and Bidau, Claudio J. and Lessa, Enrique P and Lessa, Enrique P},
title = {{Species groups and the evolutionary diversification of tuco-tucos, genus \textit{Ctenomys} (Rodentia: Ctenomyidae)}},
journal = {Journal of Mammalogy},
year = {2011},
volume = {92},
number = {3},
pages = {671--682}
}
@article{Svensson:2009cs,
author = {Svensson, Erik I and McAdam, andrew G and Sinervo, Barry},
title = {{INTRALOCUS SEXUAL CONFLICT OVER IMMUNE DEFENSE, GENDER LOAD, AND SEX-SPECIFIC SIGNALING IN A NATURAL LIZARD POPULATION}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {12},
pages = {3124--3135},
month = dec
}
@article{Herlyn:2008jk,
author = {Herlyn, Holger and Zischler, Hans},
title = {{The molecular evolution of sperm zonadhesin}},
journal = {The International Journal of Developmental Biology},
year = {2008},
volume = {52},
number = {5-6},
pages = {781--790}
}
@article{Emlen:2004tg,
author = {Emlen, ST and Wrege, PH},
title = {{Size dimorphism, intrasexual competition, and sexual selection in Wattled Jacana (\textit{Jacana jacana}), a sex-role-reversed shorebird in Panama}},
journal = {Auk},
year = {2004},
volume = {121},
number = {2},
pages = {391--403}
}
@article{Anonymous:iGX5SO9b,
title = {{2005-7}},
year = {2005},
pages = {3},
month = apr
}
@article{Peery:2010jy,
author = {Peery, M Z and Hall, L A and Sellas, A and Beissinger, S R and Moritz, C and Berube, M and Raphael, M G and Nelson, S K and Golightly, R T and McFarlane-Tranquilla, L and Newman, S and Palsboll, P J},
title = {{Genetic analyses of historic and modern marbled murrelets suggest decoupling of migration and gene flow after habitat fragmentation}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1682},
pages = {697--706},
month = jan
}
@article{GouyDeBellocq:2008ka,
author = {Go{\"u}y De Bellocq, J and Charbonnel, N and Morand, S},
title = {{Coevolutionary relationship between helminth diversity and MHC class II polymorphism in rodents.}},
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {21},
number = {4},
pages = {1144--1150},
month = jul
}
@article{Klein:1997vd,
author = {Klein, SL and Nelson, RJ},
title = {{Sex differences in immunocompetence differ between two \textit{Peromyscus} species}},
journal = {American Journal of Physiology-Regulatory Integrative and Comparative Physiology},
year = {1997},
volume = {273},
number = {2},
pages = {R655--R660}
}
@article{Fricke:2010gs,
author = {Fricke, Claudia and Martin, Oliver Y and Bretman, Amanda and Bussiere, Luc F and Chapman, Tracey},
title = {{SPERM COMPETITIVE ABILITY AND INDICES OF LIFETIME REPRODUCTIVE SUCCESS}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {9},
pages = {2746--2757},
month = sep
}
@article{Varghese:2010gd,
author = {Varghese, Sanju A and Powell, Thomas B and Janech, Michael G and Budisavljevic, Milos N and Stanislaus, Romesh C and Almeida, Jonas S and Arthur, John M},
title = {{Identification of diagnostic urinary biomarkers for acute kidney injury}},
journal = {Journal of investigative medicine : the official publication of the American Federation for Clinical Research},
year = {2010},
volume = {58},
number = {4},
pages = {612--620},
month = apr
}
@article{Lifjeld:1993vs,
author = {Lifjeld, JT and Dunn, PO and Robertson, RJ and Boag, PT},
title = {{EXTRA-PAIR PATERNITY IN MONOGAMOUS TREE SWALLOWS}},
journal = {Animal Behaviour},
year = {1993},
volume = {45},
number = {2},
pages = {213--229}
}
@article{Angelard:2008cp,
author = {Angelard, Caroline and Montchamp-Moreau, Catherine and Joly, Dominique},
title = {{Female-driven mechanisms, ejaculate size and quality contribute to the lower fertility of sex-ratio distorter males in \textit{Drosophila} \textit{simulans}}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {326}
}
@article{Alcaide:2005ug,
author = {Alcaide, M and Negro, JJ and Serrano, D and Tella, JL and Rodriguez, C},
title = {{Extra-pair paternity in the Lesser Kestrel Falco naumanni: a re-evaluation using microsatellite markers}},
journal = {Ibis},
year = {2005},
volume = {147},
number = {3},
pages = {608--611}
}
@book{Lorenz:1965vt,
author = {Lorenz, Konrad},
title = {{Evolution and Modification of Behaviour}},
publisher = {The University of Chicago Press},
year = {1965},
address = {Chicago}
}
@article{Dechmann:2009ux,
author = {Dechmann, Dina KN and Santana, Sharlene E and Dumont, Elizabeth R},
title = {{Roost making in bats-Adaptations for excavating active termite nests}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {6},
pages = {1461--1468}
}
@article{Scantlebury:2007cv,
author = {Scantlebury, M and Waterman, J M and Hillegass, M and Speakman, J R and Bennett, N C},
title = {{Energetic costs of parasitism in the Cape ground squirrel Xerus inauris}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1622},
pages = {2169--2177},
month = sep
}
@article{Jackson:2009gf,
author = {Jackson, J A and Baker, C S and Vant, M and Steel, D J and Medrano-Gonzalez, L and Palumbi, S R},
title = {{Big and Slow: Phylogenetic Estimates of Molecular Evolution in Baleen Whales (Suborder Mysticeti)}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {11},
pages = {2427--2440},
month = oct
}
@article{Anonymous:2012ei,
author = {Gerlach, N M and McGlothlin, J W and Parker, P G and Ketterson, E D},
title = {{Reinterpreting Bateman gradients: multiple mating and selection in both sexes of a songbird species}},
journal = {Behavioral Ecology},
year = {2012},
volume = {23},
number = {5},
pages = {1078--1088},
month = aug
}
@article{Carpenter:2013ia,
author = {Carpenter, S and Atianand, M and Atianand, M and Aiello, D and Aiello, D and Ricci, E P and Ricci, E P and Gandhi, P and Gandhi, P and Hall, L L and Hall, L L and Byron, M and Byron, M and Monks, B and Monks, B and Henry-Bezy, M and Henry-Bezy, M and Lawrence, J B and Lawrence, J B and O'Neill, L A J and O'Neill, L A J and Moore, M J and Moore, M J and Caffrey, D R and Caffrey, D R and Fitzgerald, K A and Fitzgerald, K A},
title = {{A Long Noncoding RNA Mediates Both Activation and Repression of Immune Response Genes}},
journal = {Science (New York, NY)},
year = {2013},
month = aug
}
@article{Burda:2000ta,
author = {Burda, H and Burda, H and Honeycutt, RL and Begall, S and Begall, S and Locker-Grutjen, O and Locker-Grutjen, O and Scharff, A and Scharff, A},
title = {{Are naked and common mole-rats eusocial and if so, why?}},
journal = {Behavioral Ecology and Sociobiology},
year = {2000},
volume = {47},
number = {5},
pages = {293--303}
}
@article{Holman:2006bb,
author = {Holman, L and Snook, R R},
title = {{Spermicide, cryptic female choice and the evolution of sperm form and function}},
journal = {Journal of Evolutionary Biology},
year = {2006},
volume = {19},
number = {5},
pages = {1660--1670},
month = sep
}
@article{Nielsen:2009hx,
author = {Nielsen, R and Hubisz, M J and Hellmann, I and Torgerson, D and andres, A M and Albrechtsen, A and Gutenkunst, R and Adams, M D and Cargill, M and Boyko, A and Indap, A and Bustamante, C D and Clark, A G},
title = {{Darwinian and demographic forces affecting human protein coding genes}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {5},
pages = {838--849},
month = may
}
@article{Moller:1989vf,
author = {Moller, AP and Birkhead, TR},
title = {{COPULATION BEHAVIOR IN MAMMALS - EVIDENCE THAT SPERM COMPETITION IS WIDESPREAD}},
journal = {Biological Journal of The Linnean Society},
year = {1989},
volume = {38},
number = {2},
pages = {119--131}
}
@article{Lyko:2010dr,
author = {Lyko, Frank and Foret, Sylvain and Kucharski, Robert and Wolf, Stephan and Falckenhayn, Cassandra and Maleszka, Ryszard},
title = {{The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers}},
journal = {PLOS Biology},
year = {2010},
volume = {8},
number = {11},
pages = {e1000506},
month = nov
}
@article{Sommer:2005eo,
author = {Sommer, S},
title = {{Major histocompatibility complex and mate choice in a monogamous rodent}},
journal = {Behavioral Ecology and Sociobiology},
year = {2005},
volume = {58},
number = {2},
pages = {181--189},
month = mar
}
@article{Potts:1994kj,
author = {Potts, W K and Potts, W K and Manning, C J and Manning, C J and Wakeland, E K and Wakeland, E K},
title = {{The role of infectious disease, inbreeding and mating preferences in maintaining MHC genetic diversity: an experimental test.}},
journal = {Philosophical Transactions of The Royal Society of London Series B-Biological Sciences},
year = {1994},
volume = {346},
number = {1317},
pages = {369--378},
month = nov
}
@article{OhUigin:2000uc,
author = {OHUigin, C and Satta, Y and Hausmann, A and Dawkins, RL and Dawkins, RL and Klein, J},
title = {{The implications of intergenic polymorphism for major histocompatibility complex evolution}},
journal = {Genetics},
year = {2000},
volume = {156},
number = {2},
pages = {867--877}
}
@article{Nicholls:1975uy,
author = {Nicholls, P},
title = {{Formate as an inhibitor of cytochrome c oxidase}},
journal = {Biochemical and biophysical research communications},
year = {1975},
volume = {67},
number = {2},
pages = {610--616},
month = nov
}
@article{ANDERSON:et,
author = {ANDERSON, J H and FAULDS, P L and ATLAS, W I and PESS, G R and QUINN, T P},
title = {{Selection on breeding date and body size in colonizing coho salmon, Oncorhynchus kisutch}},
journal = {Molecular Ecology},
pages = {no--no}
}
@article{Bulgarella:2011dx,
author = {Bulgarella, Mariana and Peters, Jeffrey L and KOPUCHIAN, CECILIA and KOPUCHIAN, CECILIA and VALQUI, THOMAS and VALQUI, THOMAS and Wilson, Robert E and McCracken, Kevin G},
title = {{Multilocus coalescent analysis of haemoglobin differentiation between low- and high-altitude populations of crested ducks (Lophonetta specularioides)}},
journal = {Molecular Ecology},
year = {2011},
pages = {no--no},
month = dec
}
@article{Mardis:2008vq,
author = {Mardis, E},
title = {{The impact of next-generation sequencing technology on genetics}},
journal = {Trends In Genetics},
year = {2008}
}
@article{Jequier:2009cz,
author = {J{\'e}quier, E and Constant, F},
title = {{Water as an essential nutrient: the physiological basis of hydration}},
journal = {European Journal of Clinical Nutrition},
year = {2009},
volume = {64},
number = {2},
pages = {115--123},
month = sep
}
@article{RichardsZawacki:2011ii,
author = {Richards-Zawacki, Corinne L and Cummings, Molly E},
title = {{INTRASPECIFIC REPRODUCTIVE CHARACTER DISPLACEMENT IN A POLYMORPHIC POISON DART FROG, DENDROBATES PUMILIO}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {1},
pages = {259--267},
month = sep
}
@article{Mitchell:2009uq,
author = {Mitchell, Neil},
title = {{MacManes_SUMC}},
year = {2009},
pages = {1--1},
month = aug
}
@article{Mcvicker:2009ic,
author = {Mcvicker, Graham and Gordon, David and Davis, Colleen and Green, Phil and Nachman, Michael W},
title = {{Widespread Genomic Signatures of Natural Selection in Hominid Evolution}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {5},
pages = {e1000471},
month = may
}
@article{Arribas:2013bh,
author = {Arribas, Paula and and{\'u}jar, Carmelo and Abell{\'a}n, Pedro and Velasco, Josefa and Mill{\'a}n, andr{\'e}s and Ribera, Ignacio},
title = {{Tempo and mode of the multiple origins of salinity tolerance in a water beetle lineage}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = dec
}
@article{Hoffman:2008ee,
author = {Hoffman, Eric A and Kovacs, Jennifer L and Goodisman, Michael AD},
title = {{Genetic structure and breeding system in a social wasp and its social parasite}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {239}
}
@article{Miller:2007tz,
author = {Miller, G and Tybur, JM},
title = {{Ovulatory cycle effects on tip earnings by lap dancers: economic evidence for human estrus?}},
journal = {Evolution and Human Behavior},
year = {2007}
}
@article{Dobigny:2010du,
author = {Dobigny, G and Catalan, J and Gauthier, P and O'Brien, P C M and Brouat, C and Ba, K and Tatard, C and Ferguson-Smith, M A and Duplantier, J M and Granjon, L and Britton-Davidian, J},
title = {{Geographic patterns of inversion polymorphisms in a wild African rodent, Mastomys erythroleucus}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {4},
pages = {378--386},
month = oct
}
@article{Pemberton:1999vq,
author = {Pemberton, JM and Coltman, DW and Smith, JA and Pilkington, JG and Pilkington, JG},
title = {{Molecular analysis of a promiscuous, fluctuating mating system}},
journal = {Biological Journal of The Linnean Society},
year = {1999},
volume = {68},
number = {1-2},
pages = {289--301}
}
@article{Iannuzzi:2006bb,
author = {Iannuzzi, Mariarosaria and Siconolfi, Patrizia and D'Angelillo, Antonio and Capuano, Maria and Tufano, Luigi and Macri, Michela},
title = {{A post-partum hemolytic-uremic-like-syndrome in a patient with pre-eclampsia: Description of a clinical case}},
journal = {Transfusion and Apheresis Science},
year = {2006},
volume = {34},
number = {1},
pages = {11--14},
month = feb
}
@article{AlvarezCastaneda:2004bq,
author = {{\'A}lvarez-Casta{\~n}eda, Sergio Ticul and Patton, James L},
title = {{Geographic genetic architecture of pocket gopher (Thomomys bottae) populations in Baja California, Mexico}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {8},
pages = {2287--2301},
month = jul
}
@article{Woodruff:2010fca,
author = {Woodruff, Julie A and Lacey, Eileen A and Bentley, George},
title = {{Contrasting fecal corticosterone metabolite levels in captive and free-living colonial tuco-tucos (\textit{Ctenomys} \textit{sociabilis})}},
journal = {Journal of Experimental Zoology Part A-Ecological Genetics and Physiology},
year = {2010},
volume = {313A},
number = {8},
pages = {498--507},
month = aug
}
@article{Toth:2011ey,
author = {Toth, Mate and Toth, Mate and Mikics, Eva and Mikics, Eva and Tulogdi, Aron and Tulogdi, Aron and Aliczki, Mano and Aliczki, Mano and Haller, Jozsef and Haller, Jozsef},
title = {{Post-weaning social isolation induces abnormal forms of aggression in conjunction with increased glucocorticoid and autonomic stress responses.}},
journal = {Hormones and Behavior},
year = {2011},
volume = {60},
number = {1},
pages = {28--36},
month = jun
}
@article{Maceachern:2009dp,
author = {Maceachern, Sean and Hayes, Ben and Mcewan, John and Goddard, Mike},
title = {{An examination of positive selection and changing effective population size in Angus and Holstein cattle populations (Bos taurus) using a high density SNP genotyping platform and the contribution of ancient polymorphism to genomic diversity in Domestic cattle}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {181}
}
@article{Daly:2010iv,
author = {Daly, Ann K},
title = {{Genome-wide association studies in pharmacogenomics}},
journal = {Nature Reviews Genetics},
year = {2010},
volume = {11},
number = {4},
pages = {241--246},
month = apr
}
@article{McCusker:2010dn,
author = {McCusker, Megan R and Bentzen, Paul},
title = {{Positive relationships between genetic diversity and abundance in fishes}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {22},
pages = {4852--4862},
month = sep
}
@article{Pays:2008ky,
author = {Pays, Olivier and Jarman, Peter J},
title = {{Does sex affect both individual and collective vigilance in social mammalian herbivores: the case of the eastern grey kangaroo?}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {5},
pages = {757--767},
month = sep
}
@article{Vestberg:1998wp,
author = {Vestberg, M and Brunsberg, U and Bergsteinsdottir, K and Karlsson, M and GUSTAFSSON, K and Wedekind, D and Hedrich, H and Holmdahl, R},
title = {{Limited polymorphism in the first domain of the rat MHC class II RT1-D molecule}},
journal = {Immunogenetics},
year = {1998},
volume = {48},
number = {5},
pages = {344--349}
}
@article{Foerster:2006dy,
author = {Foerster, K and Valcu, M and Johnsen, A and Kempenaers, B},
title = {{A spatial genetic structure and effects of relatedness on mate choice in a wild bird population}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {14},
pages = {4555--4567},
month = nov
}
@article{Chao:1984vh,
author = {Chao, A},
title = {{Nonparametric Estimation of the Number of Classes in a Population}},
journal = {Scandinavian Journal of Statistics},
year = {1984},
volume = {11}
}
@article{anderson:2011jo,
author = {anderson, Joseph H and anderson, Joseph H and Ward, Eric J and Ward, Eric J and Carlson, Stephanie M and Carlson, Stephanie M},
title = {{A model for estimating the minimum number of offspring to sample in studies of reproductive success.}},
journal = {Journal of Heredity},
year = {2011},
volume = {102},
number = {5},
pages = {567--576},
month = aug
}
@article{HARRISON:2011dz,
author = {HARRISON, XAVIER A and HARRISON, XAVIER A and BEARHOP, STUART and BEARHOP, STUART and INGER, RICHARD and INGER, RICHARD and COLHOUN, KENDREW and COLHOUN, KENDREW and GUDMUNDSSON, GUDMUNDUR A and GUDMUNDSSON, GUDMUNDUR A and HODGSON, DAVID and HODGSON, DAVID and McELWAINE, GRAHAM and McELWAINE, GRAHAM and Tregenza, Tom},
title = {{Heterozygosity-fitness correlations in a migratory bird: an analysis of inbreeding and single-locus effects.}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {22},
pages = {4786--4795},
month = nov
}
@article{Wigby:2009dm,
author = {Wigby, Stuart and Sirot, Laura K and Linklater, Jon R and Buehner, Norene and Calboli, Federico C F and Bretman, Amanda and Wolfner, Mariana F and Chapman, Tracey},
title = {{Seminal Fluid Protein Allocation and Male Reproductive Success}},
journal = {Current Biology},
year = {2009},
volume = {19},
number = {9},
pages = {751--757},
month = may
}
@article{BesterMeredith:2012bt,
author = {Bester-Meredith, Janet K and Marler, Catherine A},
title = {{Naturally Occurring Variation in Vasopressin Immunoreactivity Is Associated with Maternal Behavior in Female \textbf{\emph{\textit{Peromyscus} }}Mice}},
journal = {Brain, Behavior and Evolution},
year = {2012}
}
@article{Moore:2010fo,
author = {Moore, Dani and Liebig, J{\"u}rgen},
title = {{Mixed messages: fertility signaling interferes with nestmate recognition in the monogynous ant Camponotus floridanus}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {64},
number = {6},
pages = {1011--1018},
month = feb
}
@article{Rehan:2012jj,
author = {Rehan, SM and Leys, R},
title = {{A Mid-Cretaceous Origin of Sociality in Xylocopine Bees with Only Two Origins of True Worker Castes Indicates Severe Barriers to Eusociality}},
journal = {PLOS ONE},
year = {2012}
}
@book{Drickamer:1992wp,
author = {Drickamer, L and Vessey, S},
title = {{\emph{Animal Behavior: Mechanisms, Ecology, and Evolution}}},
year = {1992},
month = apr
}
@article{Hashiguchi:2008gu,
author = {Hashiguchi, Yasuyuki and Furuta, Yoshimi and Nishida, Mutsumi},
title = {{Evolutionary Patterns and Selective Pressures of Odorant/Pheromone Receptor Gene Families in Teleost Fishes}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {12},
pages = {e4083},
month = dec
}
@article{Rocheta:2007cl,
author = {Rocheta, Margarida and Miguel Dion{\'\i}sio, F and Fonseca, Luis and Pires, Ana M},
title = {{Paternity analysis in Excel}},
journal = {Computer Methods and Programs in Biomedicine},
year = {2007},
volume = {88},
number = {3},
pages = {234--238},
month = dec
}
@article{SCHMIDTNIELSEN:1952wi,
author = {Schmidt-Nielsen, K and Schmidt-Nielsen, B},
title = {{Water metabolism of desert mammals 1.}},
journal = {Physiological reviews},
year = {1952},
volume = {32},
number = {2},
pages = {135--166},
month = apr
}
@article{Clark:2005dy,
author = {Clark, Nathaniel L and Swanson, Willie J},
title = {{Pervasive Adaptive Evolution in Primate Seminal Proteins}},
journal = {PLOS Genetics},
year = {2005},
volume = {1},
number = {3},
pages = {e35}
}
@article{Leache:2009bb,
author = {Leache, A D},
title = {{Species Tree Discordance Traces to Phylogeographic Clade Boundaries in North American Fence Lizards (Sceloporus)}},
journal = {Systematic Biology},
year = {2009},
volume = {58},
number = {6},
pages = {547--559},
month = nov
}
@article{Treangen:2011dn,
author = {Treangen, Todd J and Treangen, Todd J and Salzberg, Steven L},
title = {{Repetitive DNA and next-generation sequencing: computational challenges and solutions}},
journal = {Nature Reviews Genetics},
year = {2011},
pages = {1--11},
month = nov
}
@article{Lister:2009bo,
author = {Lister, R and Ecker, J R},
title = {{Finding the fifth base: Genome-wide sequencing of cytosine methylation}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {6},
pages = {959--966},
month = jun
}
@article{Johnson:2007fg,
author = {Johnson, Jeff A and Dunn, Peter O and Bouzat, Juan L},
title = {{Effects of recent population bottlenecks on reconstructing the demographic history of prairie-chickens}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {11},
pages = {2203--2222},
month = jun
}
@article{Yamazaki:1988wu,
author = {Yamazaki, K and Yamazaki, K and Beauchamp, G K and Beauchamp, G K and Kupniewski, D and Kupniewski, D and Bard, J and Bard, J and Thomas, L and Thomas, L and Boyse, E A and Boyse, E A},
title = {{Familial imprinting determines H-2 selective mating preferences.}},
journal = {Science (New York, NY)},
year = {1988},
volume = {240},
number = {4857},
pages = {1331--1332},
month = jun
}
@article{Takahashi:2012io,
author = {Takahashi, Tetsumi and Hori, Michio},
title = {{Genetic and Morphological Evidence Implies Existence of Two Sympatric Species in Cyathopharynx furcifer (Teleostei: Cichlidae) from Lake Tanganyika}},
journal = {International Journal of Evolutionary Biology},
year = {2012},
volume = {2012},
pages = {1--7}
}
@article{Kloser:2011dh,
author = {Kloser, Matthew J and Kloser, Matthew J and Brownell, Sara E and Brownell, Sara E and Chiariello, Nona R and Chiariello, Nona R and Fukami, Tadashi and Fukami, Tadashi},
title = {{Integrating Teaching and Research in Undergraduate Biology Laboratory Education}},
journal = {PLOS Biology},
year = {2011},
volume = {9},
number = {11},
pages = {e1001174},
month = nov
}
@article{Efford:2004tv,
author = {Efford, M and Efford, M},
title = {{Density estimation in live-trapping studies}},
journal = {Oikos},
year = {2004},
volume = {106},
number = {3},
pages = {598--610}
}
@article{Fortunato:2010kt,
author = {Fortunato, L and Archetti, M},
title = {{Evolution of monogamous marriage by maximization of inclusive fitness}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {1},
pages = {149--156},
month = jan
}
@article{Neher:2010ii,
author = {Neher, R A and Shraiman, B I and Fisher, D S},
title = {{Rate of Adaptation in Large Sexual Populations}},
journal = {Genetics},
year = {2010},
volume = {184},
number = {2},
pages = {467--481},
month = jan
}
@article{Gutman:2007bb,
author = {Gutman, Roee and Yosha, Dotan and Choshniak, Itzhak and Kronfeld-Schor, Noga},
title = {{Two strategies for coping with food shortage in desert golden spiny mice}},
journal = {Physiology {\&} Behavior},
year = {2007},
volume = {90},
number = {1},
pages = {95--102},
month = jan
}
@article{Moller:1995wy,
author = {Moller, AP and Briskie, JV},
title = {{Extra-Pair Paternity, Sperm Competition and the Evolution of Testis Size in Birds}},
journal = {Behavioral Ecology and Sociobiology},
year = {1995},
volume = {36},
number = {5},
pages = {357--365}
}
@article{McPeek:2009hk,
author = {McPeek, Mark A and DeAngelis, Donald L and Shaw, Ruth G and Moore, Allen J and Rausher, Mark D and Strong, Donald R and Ellison, Aaron M and Barrett, Louise and Rieseberg, Loren and Breed, Michael D and Sullivan, Jack and Osenberg, Craig W and Holyoak, Marcel and Elgar, Mark A},
title = {{The Golden Rule of Reviewing}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {5},
pages = {E155--E158},
month = may
}
@article{Breuer:2009ib,
author = {Breuer, Thomas and Robbins, andrew M and Olejniczak, Claudia and Parnell, Richard J and Stokes, Emma J and Robbins, Martha M},
title = {{Variance in the male reproductive success of western gorillas: acquiring females is just the beginning}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {64},
number = {4},
pages = {515--528},
month = oct
}
@article{Zhou:2011hw,
author = {Zhou, Jianfu and Zhou, Jianfu and Liu, Xiaoguang and Liu, Xiaoguang and Stones, Douglas S and Stones, Douglas S and Xie, Qiang and Xie, Qiang and Wang, Gang and Wang, Gang},
title = {{MrBayes on a Graphics Processing Unit.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {9},
pages = {1255--1261},
month = may
}
@article{Wild:2008iv,
author = {Wild, Geoff},
title = {{Toward evolutionary graphs with two sexes: a kin selection analysis of a sex allocation problem}},
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {21},
number = {5},
pages = {1428--1437},
month = sep
}
@article{Cockburn:1998tv,
author = {Cockburn, A},
title = {{Evolution of helping behavior in cooperatively breeding birds}},
journal = {Annual Review of Ecology and Systematics},
volume = {29},
pages = {141--177}
}
@book{Darwin:1859tm,
author = {Darwin, C},
title = {{On the Origin of Species by Means of Natural Selection or the Preservation of Favored Races in the Struggle for Life}},
publisher = {J. Murray},
year = {1859},
address = {London},
edition = {1st}
}
@article{Finger:2011cj,
author = {Finger, Elizabeth C},
title = {{New Potential Therapeutic Approaches in Frontotemporal Dementia: Oxytocin, Vasopressin, and Social Cognition.}},
journal = {Journal of molecular neuroscience : MN},
year = {2011},
month = may
}
@article{Gardner:2002tp,
author = {Gardner, MG and Bull, CM and Cooper, SJB},
title = {{High levels of genetic monogamy in the group-living Australian lizard Egernia stokesii}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {9},
pages = {1787--1794}
}
@article{Wilson:2010du,
author = {Wilson, Alastair J and Nussey, Daniel H},
title = {{What is individual quality? An evolutionary perspective}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {4},
pages = {207--214},
month = apr
}
@article{Oring:1992ua,
author = {Oring, LW and Oring, LW and FLEISCHER, RC and FLEISCHER, RC and REED, JM and REED, JM and MARSDEN, KE and MARSDEN, KE},
title = {{Cuckoldry Through Stored Sperm in the Sequentially Polyandrous Spotted Sandpiper}},
journal = {Nature},
year = {1992},
volume = {359},
number = {6396},
pages = {631--633}
}
@article{Bouteiller:2000tq,
author = {Bouteiller, C and Bouteiller, C and Perrin, N},
title = {{Individual reproductive success and effective population size in the greater white-toothed shrew Crocidura russula}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1444},
pages = {701--705}
}
@article{McHardy:2009gx,
author = {McHardy, Alice Carolyn and Adams, Ben},
title = {{The Role of Genomics in Tracking the Evolution of Influenza A Virus}},
journal = {PLOS pathogens},
year = {2009},
volume = {5},
number = {10},
pages = {e1000566},
month = oct
}
@article{Chan:2012kz,
author = {Chan, C X and Zauner, S and Wheeler, G and Grossman, A R and Prochnik, S E and Blouin, N A and Zhuang, Y and Benning, C and Berg, G M and Yarish, C and Eriksen, R L and Klein, A S and Lin, S and Levine, I and Brawley, S H and Bhattacharya, D},
title = {{Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems}},
journal = {PLANT PHYSIOLOGY},
year = {2012},
volume = {158},
number = {4},
pages = {2001--2012},
month = apr
}
@article{SLADE:1992tm,
author = {SLADE, RW},
title = {{LIMITED MHC POLYMORPHISM IN THE SOUTHERN ELEPHANT SEAL - IMPLICATIONS FOR MHC EVOLUTION AND MARINE MAMMAL POPULATION BIOLOGY}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1992},
volume = {249},
number = {1325},
pages = {163--171}
}
@article{Carroll:2009bm,
author = {Carroll, Ian M and Threadgill, David W and Threadgill, Deborah S},
title = {{The gastrointestinal microbiome: a malleable, third genome of mammals}},
journal = {Mammalian Genome},
year = {2009},
volume = {20},
number = {7},
pages = {395--403},
month = jul
}
@article{Toth:2010fr,
author = {Toth, Amy L and Varala, Kranthi and Henshaw, Michael T and Henshaw, Michael T and Rodriguez-Zas, Sandra L and Hudson, Matthew E and Robinson, Gene E},
title = {{Brain transcriptomic analysis in paper wasps identifies genes associated with behaviour across social insect lineages.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1691},
pages = {2139--2148},
month = jul
}
@article{ChavezGalarza:2013jra,
author = {Ch{\'a}vez Galarza, Julio and Henriques, Dora and Johnston, J Spencer and Azevedo, Jo{\~a}o C and Patton, John C and Mu{\~n}oz, Irene and De la R{\'u}a, Pilar and Pinto, M Alice},
title = {{Signatures of selection in the Iberian honey bee (Apis mellifera iberiensis) revealed by a genome scan analysis of single nucleotide polymorphisms}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {23},
pages = {5890--5907},
month = oct
}
@article{Delavaud:2013cu,
author = {Delavaud, Carole and Bengoumi, Mohammed and Faye, Bernard and Levieux, Didier and Chilliard, Yves},
title = {{Comparative Biochemistry and Physiology, Part A}},
journal = {Comparative Biochemistry and Physiology Part A: {\ldots}},
year = {2013},
volume = {166},
number = {1},
pages = {177--185},
month = sep
}
@article{Touming:2013co,
author = {Liu, Touming and Zhu, Siyuan and Tang, Qingming and Chen, Ping and Yu, Yongting and Tang, Shouwei},
title = {{\textit{De novo} assembly and characterization of transcriptome using Illumina paired-end sequencing and identification of CesA gene in ramie (Boehmeria nivea L. Gaud).}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {125}
}
@article{BULL:1994te,
author = {BULL, JJ},
title = {{PERSPECTIVE - VIRULENCE}},
journal = {Evolution},
year = {1994},
volume = {48},
number = {5},
pages = {1423--1437}
}
@article{Hirose:2011kn,
author = {Hirose, Shigenori and Benabentos, Rocio and Ho, Hsing-I and Kuspa, Adam and Shaulsky, Gad},
title = {{Self-Recognition in Social Amoebae Is Mediated by Allelic Pairs of Tiger Genes.}},
journal = {Science (New York, NY)},
year = {2011},
month = jun
}
@article{Schuz:2009fb,
author = {Sch{\"u}z, Joachim and Waldemar, Gunhild and Olsen, J{\o}rgen H and Johansen, Christoffer},
title = {{Risks for Central Nervous System Diseases among Mobile Phone Subscribers: A Danish Retrospective Cohort Study}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {2},
pages = {e4389},
month = feb
}
@article{Whittingham:2004kb,
author = {Whittingham, L A},
title = {{Effects of extra-pair and within-pair reproductive success on the opportunity for selection in birds}},
journal = {Behavioral Ecology},
year = {2004},
volume = {16},
number = {1},
pages = {138--144},
month = jul
}
@article{Meng:2010el,
author = {Meng, Hailong and Joyce, andrew R and Adkins, Daniel E and Basu, Priyadarshi and Jia, Yankai and Li, Guoya and Sengupta, Tapas K and Zedler, Barbara K and Murrelle, E Lenn and van den Oord, Edwin JCG},
title = {{A statistical method for excluding non-variable CpG sites in high-throughput DNA methylation profiling}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {227}
}
@article{Anonymous:29E6W60v,
title = {{rpv}},
year = {2009},
pages = {1--10},
month = dec
}
@article{Fu:1993ts,
author = {Fu, Y X and Li, W-H},
title = {{Statistical tests of neutrality of mutations.}},
journal = {Genetics},
year = {1993},
volume = {133},
number = {3},
pages = {693--709},
month = mar
}
@article{Bonneaud:2012hs,
author = {Bonneaud, Camille and Balenger, Susan L and HILL, GEOFFREY E and HILL, GEOFFREY E and Russell, andrew F},
title = {{Experimental evidence for distinct costs of pathogenesis and immunity against a natural pathogen in a wild bird}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = aug
}
@article{Michl:2002ek,
author = {Michl, G},
title = {{Experimental analysis of sperm competition mechanisms in a wild bird population}},
journal = {Proceedings of the National Academy of Sciences},
year = {2002},
volume = {99},
number = {8},
pages = {5466--5470},
month = apr
}
@article{Villar:2005fl,
author = {Villar, S and Villar, S and Martinez-Lopez, W and Martinez-Lopez, W and Folle, G and Folle, G and Novello, A},
title = {{Cytogenetic analysis of different \textit{Ctenomys} (Rodentia, Octodontidae) species from Uruguay using G-banding}},
journal = {Mammalian Biology},
year = {2005},
volume = {70},
number = {4},
pages = {255--260}
}
@article{Hupton:2003ve,
author = {Hupton, G and Portocarrero, S and Newman, M and Westneat, DE},
title = {{Bacteria in the reproductive tracts of red-winged blackbirds}},
journal = {The Condor},
year = {2003},
volume = {105},
number = {3},
pages = {453--464}
}
@article{Tonteri:2010jz,
author = {Tonteri, A and Vasemagi, A and Lumme, J and Primmer, C R},
title = {{Beyond MHC: signals of elevated selection pressure on Atlantic salmon ( Salmo salar) immune-relevant loci}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {7},
pages = {1273--1282},
month = apr
}
@article{Lubjuhn:1999uz,
author = {Lubjuhn, T and Gerken, T and Gerken, T and Brun, J and Brun, J and Epplen, JT},
title = {{High frequency of extra-pair paternity in the Coal Tit}},
journal = {Journal of Avian Biology},
year = {1999},
volume = {30},
number = {2},
pages = {229--233}
}
@article{McKeown:2008bj,
author = {McKeown, N J and Shaw, P W},
title = {{Single paternity within broods of the brown crab Cancer pagurus: a highly fecund species with~ long-term sperm storage}},
journal = {Marine Ecology Progress Series},
year = {2008},
volume = {368},
pages = {209--215},
month = sep
}
@article{GomezUchida:2009in,
author = {Gomez-Uchida, Daniel and Knight, Thomas W and Ruzzante, Daniel E},
title = {{Interaction of landscape and life history attributes on genetic diversity, neutral divergence and gene flow in a pristine community of salmonids}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {23},
pages = {4854--4869},
month = dec
}
@article{Hoffmann:2012kk,
author = {Hoffmann, Frauke and Kloas, Werner},
title = {{Estrogens Can Disrupt Amphibian Mating Behavior}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e32097},
month = feb
}
@article{Manske:2009ki,
author = {Manske, H M and Kwiatkowski, D P},
title = {{LookSeq: A browser-based viewer for deep sequencing data}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {11},
pages = {2125--2132},
month = nov
}
@article{Rogers:2008do,
author = {Rogers, D W and Whitten, M M A and Thailayil, J and Soichot, J and Levashina, E A and Catteruccia, F},
title = {{Molecular and cellular components of the mating machinery in Anopheles gambiae females}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {49},
pages = {19390--19395},
month = dec
}
@article{Creighton:2000wb,
author = {Creighton, E},
title = {{Female mate guarding: no evidence in a socially monogamous species}},
journal = {Animal Behaviour},
year = {2000},
volume = {59},
pages = {201--207}
}
@article{Milne:2010hta,
author = {Milne, I and Bayer, M and Cardle, L and Shaw, P and Stephen, G and Wright, F and Marshall, D},
title = {{Tablet--next generation sequence assembly visualization}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {3},
pages = {401--402},
month = feb
}
@article{Kundeti:2010cv,
author = {Kundeti, Vamsi K and Rajasekaran, Sanguthevar and Dinh, Hieu and Vaughn, Matthew and Thapar, Vishal},
title = {{Efficient parallel and out of core algorithms for constructing large bi-directed \textit{de Bruijn} graphs}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {560}
}
@article{Mojib:2014bb,
author = {Mojib, Nazia and Amad, Maan and Thimma, Manjula and Aldanondo, Naroa and Kumaran, Mande and Irigoien, Xabier},
title = {{Carotenoid metabolic profiling and transcriptome-genome mining reveal functional equivalence among blue-pigmented copepods and appendicularia}},
journal = {Molecular Ecology},
year = {2014},
pages = {n/a--n/a},
month = may
}
@article{Sefc:2008jb,
author = {Sefc, Kristina M},
title = {{Variance in reproductive success and the opportunity for selection in a serially monogamous species: simulations of the mating system of Tropheus (Teleostei: Cichlidae)}},
journal = {Hydrobiologia},
year = {2008},
volume = {615},
number = {1},
pages = {21--35},
month = sep
}
@article{Chapman:2013ke,
author = {Chapman, M A and Hiscock, S J and Filatov, D A},
title = {{Genomic Divergence during Speciation Driven by Adaptation to Altitude}},
journal = {Molecular Biology and Evolution},
year = {2013},
volume = {30},
number = {12},
pages = {2553--2567},
month = nov
}
@article{Rollmann:2010ij,
author = {Rollmann, Stephanie M and Rollmann, Stephanie M and Wang, Ping and Wang, Ping and Date, Priya and Date, Priya and West, Steven A and West, Steven A and Mackay, Trudy F C and Mackay, Trudy F C and Anholt, Robert R H and Anholt, Robert R H},
title = {{Odorant Receptor Polymorphisms and Natural Variation in Olfactory Behavior in \textit{Drosophila} \textit{melanogaster}}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {2},
pages = {687--U364}
}
@article{CastroPrieto:2011jz,
author = {Castro-Prieto, A and Wachter, B and Sommer, S},
title = {{Cheetah Paradigm Revisited: MHC Diversity in the World's Largest Free-Ranging Population}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {4},
pages = {1455--1468},
month = mar
}
@article{Johnson:2003kh,
author = {Johnson, Jason M and Castle, John and Garrett-Engele, Philip and Kan, Zhengyan and Loerch, Patrick M and Armour, Christopher D and Santos, Ralph and Schadt, Eric E and Stoughton, Roland Shoemaker, Daniel D},
title = {{Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays.}},
journal = {Science (New York, NY)},
year = {2003},
volume = {302},
number = {5653},
pages = {2141--2144},
month = dec
}
@article{Gunn:2009io,
author = {Gunn, David A and Rexbye, Helle and Griffiths, Christopher E M and Murray, Peter G and Fereday, Amelia and Catt, Sharon D and Tomlin, Cyrena C and Strongitharm, Barbara H and Perrett, Dave I and Catt, Michael and Mayes, andrew E and Messenger, andrew G and Green, Martin R and van der Ouderaa, Frans and Vaupel, James W and Christensen, Kaare},
title = {{Why Some Women Look Young for Their Age}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {12},
pages = {e8021},
month = dec
}
@article{Bucciarelli:2009hy,
author = {Bucciarelli, G and Di Filippo, M and Costagliola, D and Alvarez-Valin, F and Bernardi, G and Bernardi, G},
title = {{Environmental Genomics: A Tale of Two Fishes}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {6},
pages = {1235--1243},
month = may
}
@article{Denoeud:2008bz,
author = {Denoeud, France and Aury, Jean-Marc and Da Silva, Corinne and Noel, Benjamin and Rogier, Odile and Delledonne, Massimo and Morgante, Michele and Valle, Giorgio and Wincker, Patrick and Scarpelli, Claude and Jaillon, Olivier and Artiguenave, Francois},
title = {{Annotating genomes with massive-scale RNA sequencing}},
journal = {Genome Biology},
year = {2008},
volume = {9},
number = {12},
pages = {R175}
}
@article{NUNNEY:1993ug,
author = {NUNNEY, L},
title = {{THE INFLUENCE OF MATING SYSTEM AND OVERLAPPING GENERATIONS ON EFFECTIVE POPULATION-SIZE}},
journal = {Evolution},
year = {1993},
volume = {47},
number = {5},
pages = {1329--1341}
}
@article{Bollback:2006ju,
author = {Bollback, Jonathan P},
title = {{SIMMAP: stochastic character mapping of discrete traits on phylogenies.}},
journal = {BMC Bioinformatics},
year = {2006},
volume = {7},
pages = {88}
}
@article{Crompton:2010dh,
author = {Crompton, Robin Huw and Crompton, Robin Huw and Sellers, William I and Sellers, William I and Thorpe, Susannah K S and Thorpe, Susannah K S},
title = {{Arboreality, terrestriality and bipedalism.}},
journal = {Philosophical Transactions of The Royal Society B-Biological Sciences},
year = {2010},
volume = {365},
number = {1556},
pages = {3301--3314},
month = oct
}
@article{Anonymous:Er_s7NKh,
title = {{DDIG 2008 Review 2}},
year = {2008},
pages = {2},
month = apr
}
@article{Bryja:2007et,
author = {Bryja, J and Charbonnel, N and Berthier, K and Galan, M and Cosson, J F},
title = {{Density-related changes in selection pattern for major histocompatibility complex genes in fluctuating populations of voles}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {23},
pages = {5084--5097},
month = dec
}
@article{Rolland:2012cg,
author = {Rolland, R M and Rolland, R M and Parks, S E and Parks, S E and Hunt, K E and Hunt, K E and Castellote, M and Castellote, M and Corkeron, P J and Corkeron, P J and Nowacek, D P and Nowacek, D P and Wasser, S K and Wasser, S K and Kraus, S D},
title = {{Evidence that ship noise increases stress in right whales}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1737},
pages = {2363--2368},
month = may
}
@article{Lister:2011by,
author = {Lister, Adrian M},
title = {{Natural history collections as sources of long-term datasets}},
journal = {Trends In Ecology {\&} Evolution},
year = {2011},
volume = {26},
number = {4},
pages = {153--154},
month = apr
}
@article{Anonymous:twvNj7bi,
title = {{P Roy Soc Lond B Bio 1996 Antia}},
year = {2005},
pages = {8},
month = feb
}
@article{Hou:2010do,
author = {Hou, C and Kaspari, M and Vander Zanden, H B and Gillooly, J F},
title = {{Energetic basis of colonial living in social insects}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {8},
pages = {3634--3638},
month = feb
}
@article{Anonymous:1dc,
author = {{Bactrian Camels Genome Sequencing and Analysis Consortium} and Jirimutu and Wang, Zhen and Ding, Guohui and Chen, Gangliang and Sun, Yamin and Sun, Zhihong and Zhang, Heping and Wang, Lei and Hasi, Surong and Zhang, Yan and Li, Jianmei and Shi, Yixiang and Xu, Ze and He, Chuan and Yu, Siriguleng and Li, Shengdi and Zhang, Wenbin and Batmunkh, Mijiddorj and Ts, Batsukh and Narenbatu and Unierhu and Bat-Ireedui, Shirzana and Gao, Hongwei and Baysgalan, Banzragch and Li, Qing and Jia, Zhiling and Turigenbayila and Subudenggerile and Narenmanduhu and Wang, Zhaoxia and Wang, Juan and Pan, Lei and Chen, Yongcan and Ganerdene, Yaichil and Dabxilt and Erdemt and Altansha and Altansukh and Liu, Tuya and Cao, Minhui and Aruuntsever and Bayart and Hosblig and He, Fei and Zha-ti, A and Zheng, Guangyong and Qiu, Feng and Sun, Zikui and Zhao, Lele and Zhao, Wenjing and Liu, Baohong and Li, Chao and Chen, Yunqin and Tang, Xiaoyan and Guo, Chunyan and Liu, Wei and Ming, Liang and Temuulen and Cui, Aiying and Li, Yi and Gao, Junhui and Li, Jing and Wurentaodi and Niu, Shen and Sun, Tao and Zhai, Zhengxiao and Zhang, Min and Chen, Chen and Baldan, Tunteg and Bayaer, Tuman and Li, Yixue and Meng, He},
title = {{Genome sequences of wild and domestic bactrian camels.}},
journal = {Nature communications},
year = {2012},
volume = {3},
pages = {1202}
}
@article{BIRKHEAD:1987td,
author = {BIRKHEAD, T},
title = {{SPERM COMPETITION IN BIRDS}},
journal = {Trends In Ecology {\&} Evolution},
year = {1987},
volume = {2},
number = {9},
pages = {268--272}
}
@article{Maier:2000wq,
author = {Maier, S and Maier, S and Emmanuilidis, K and Emmanuilidis, K and Entleutner, M and Entleutner, M and Zantl, N and Zantl, N and Werner, M and Werner, M and Pfeffer, K and Pfeffer, K and Heidecke, C D and Heidecke, C D},
title = {{Massive chemokine transcription in acute renal failure due to polymicrobial sepsis}},
journal = {Shock (Augusta, Ga)},
year = {2000},
volume = {14},
number = {2},
pages = {187--192},
month = aug
}
@article{deMiguel:2014fj,
author = {de Miguel, Marina and Cabezas, Jos{\'e}-Antonio and de Mar{\'\i}a, Nuria and S{\'a}nchez-G{\'o}mez, David and Guevara, Mar{\'\i}a {\'A}ngeles and V{\'e}lez, Mar{\'\i}a Dolores and S{\'a}ez-Laguna, Enrique and D{\'\i}az, Luis Manuel and Mancha, Jose Antonio and Barbero, Mar{\'\i}a Carmen and Collada, Carmen and D{\'\i}az-Sala, Carmen and Aranda, Ismael and Cervera, Mar{\'\i}a-Teresa},
title = {{Genetic control of functional traits related to photosynthesis and water use efficiency in Pinus pinaster Ait. drought response: integration of genome annotation, allele association and QTL detection for candidate gene identification}},
journal = {BMC Genomics},
year = {2014},
volume = {15},
number = {1},
pages = {464}
}
@article{Anonymous:WEgDlskU,
title = {{Infect Immun 1999 Duensing}},
year = {1999},
pages = {6},
month = aug
}
@article{Blyth:2006ti,
author = {Blyth, JE and Gilburn, AS},
title = {{Extreme promiscuity in a mating system dominated by sexual conflict}},
journal = {Journal of Insect Behavior},
year = {2006},
volume = {19},
number = {4},
pages = {447--455}
}
@article{anderson:2004vw,
author = {anderson, MJ and Nyholt, J and Nyholt, J and Dixson, AE and Dixson, AE},
title = {{Sperm competition affects the structure of the mammalian vas deferens}},
journal = {Journal of Zoology},
year = {2004},
volume = {264},
pages = {97--103}
}
@article{Danecek:2011gz,
author = {Danecek, Petr and Danecek, Petr and Auton, Adam and Auton, Adam and Abecasis, Goncalo and Abecasis, Goncalo and Albers, Cornelis A and Albers, Cornelis A and Banks, Eric and Banks, Eric and Depristo, Mark A and Depristo, Mark A and Handsaker, Robert E and Handsaker, Robert E and Lunter, Gerton and Marth, Gabor T and Marth, Gabor T and Sherry, Stephen T and Sherry, Stephen T and McVean, Gilean and McVean, Gilean and Durbin, Richard and {1000 Genomes Project Analysis Group} and {1000 Genomes Project Analysis Group}},
title = {{The variant call format and VCFtools.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {15},
pages = {2156--2158},
month = aug
}
@article{Stern:2009kw,
author = {Stern, D L and Orgogozo, V},
title = {{Is Genetic Evolution Predictable?}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5915},
pages = {746--751},
month = feb
}
@article{Lahti:2009ju,
author = {Lahti, David C and Johnson, Norman A and Ajie, Beverly C and Otto, Sarah P and Hendry, andrew P and Blumstein, Daniel T and Coss, Richard G and Donohue, Kathleen and Foster, Susan A},
title = {{Relaxed selection in the wild}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {9},
pages = {487--496},
month = sep
}
@article{Hughes:2008iw,
author = {Hughes, W O H and Boomsma, J J},
title = {{Genetic royal cheats in leaf-cutting ant societies}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {13},
pages = {5150--5153},
month = apr
}
@article{Hosken:2008td,
author = {Hosken, David J and Taylor, Michelle L and Hoyle, Katherine and Higgins, Sahran and Wedell, Nina},
title = {{Attractive males have greater success in sperm competition}},
journal = {Current biology : CB},
year = {2008},
volume = {18},
number = {13},
pages = {R553--R554}
}
@article{DelFabbro:2013ij,
author = {Del Fabbro, Cristian and Scalabrin, Simone and Morgante, Michele and Giorgi, Federico M},
title = {{An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {12},
pages = {e85024},
month = dec
}
@article{Baxter:2008fo,
author = {Baxter, S W and Papa, R and Chamberlain, N and Humphray, S J and Joron, M and Morrison, C and ffrench-Constant, R H and McMillan, W O and Jiggins, C D},
title = {{Convergent evolution in the genetic basis of M{\"u}llerian mimicry in heliconius butterflies.}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {3},
pages = {1567--1577},
month = nov
}
@article{Wacker:2010gg,
author = {Wacker, Douglas W. and Wingfield, John C and Davis, Jason E. and Meddle, Simone L.},
title = {{Seasonal changes in aromatase androgen receptor, but not estrogen receptor mRNA expression in the brain of the free-living male song sparrow, \emph{\textit{Melospiza} \textit{melodia} \textit{morphna}}}},
journal = {The Journal of Comparative Neurology},
year = {2010},
volume = {518},
number = {18},
pages = {3819--3835}
}
@article{Mclaughlin:2007tx,
author = {Mclaughlin, Patsy A and Lemaitre, Rafael and Sorhannus, Ulf},
title = {{Hermit crab phylogeny: A reappraisal and its "fall-out"}},
journal = {Journal of Crustacean Biology},
year = {2007},
volume = {27},
number = {1},
pages = {97--115}
}
@article{Geffen:2011hh,
author = {Geffen, Eli and Rowe, Kevin C and Yom-Tov, Yoram},
title = {{Reproductive rates in Australian rodents are related to phylogeny.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {4},
pages = {e19199}
}
@article{Cunningham:1992eq,
author = {Cunningham, C W and Blackstone, N W and Buss, L W},
title = {{Evolution of king crabs from hermit crab ancestors}},
journal = {Nature},
year = {1992},
volume = {355},
number = {6360},
pages = {539--542},
month = feb
}
@article{Oliver:2010jh,
author = {Oliver, Matthew and Piertney, Stuart},
title = {{Beyond splitting hares and rabbiting on about major histocompatibility complex complexity}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {19},
pages = {4099--4101},
month = sep
}
@article{Hughes:2006bu,
author = {Hughes, W O H and Boomsma, J J},
title = {{Does genetic diversity hinder parasite evolution in social insect colonies?}},
journal = {Journal of Evolutionary Biology},
year = {2006},
volume = {19},
number = {1},
pages = {132--143}
}
@article{Alberto:2009db,
author = {Alberto, F},
title = {{MsatAllele_1.0: An R Package to Visualize the Binning of Microsatellite Alleles}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {3},
pages = {394--397},
month = mar
}
@article{Nurtdinov:2009fe,
author = {Nurtdinov, Ramil N and Mironov, andrey A and Gelfand, Mikhail S},
title = {{Rodent-specific alternative exons are more frequent in rapidly evolving genes and in paralogs}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {142}
}
@article{Lacey:2004ga,
author = {Lacey, E A},
title = {{Kinship in colonial tuco-tucos: evidence from group composition and population structure}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {6},
pages = {988--996},
month = jun
}
@article{Amundsen:2000wo,
author = {Amundsen, T},
title = {{Why are female birds ornamented?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2000},
volume = {15},
number = {4},
pages = {149--155}
}
@article{Li:2013tk,
author = {Li, W and Freudenberg, J and Miramontes, P and Miramontes, P},
title = {{Diminishing Return for Increased Mappability with Longer Sequencing Reads: Implications of the k-mer Distributions in the Human Genome}},
journal = {arXiv.org},
year = {2013},
eprint = {B82154EA-7A52-40A7-89F9-A840054562B1},
eprinttype = {scholar}
}
@article{Brown:2010dra,
author = {Brown, Jason L and Morales, Victor and Summers, Kyle},
title = {{A Key Ecological Trait Drove the Evolution of Biparental Care and Monogamy in an Amphibian}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {4},
pages = {436--446},
month = apr
}
@article{Anonymous:3mb8eMEm,
title = {{Exploring Genome Characteristics and Sequence Quality Without a Reference}},
year = {2013},
pages = {1--9},
month = nov
}
@article{Vigilant:2001vk,
author = {Vigilant, L and Hofreiter, M and Siedel, H and Boesch, C},
title = {{Paternity and relatedness in wild chimpanzee communities}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2001},
volume = {98},
number = {23},
pages = {12890--12895}
}
@article{GOOD:1987vh,
author = {GOOD, DA},
title = {{A PHYLOGENETIC ANALYSIS OF CRANIAL OSTEOLOGY IN THE GERRHONOTINE LIZARDS}},
journal = {Journal of Herpetology},
year = {1987},
volume = {21},
number = {4},
pages = {285--297}
}
@article{Muller:2008in,
author = {M{\"u}ller, Corsin A and Manser, Marta B},
title = {{Mutual recognition of pups and providers in the cooperatively breeding banded mongoose}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {5},
pages = {1683--1692},
month = may
}
@article{Jones:2004uw,
author = {Jones, AG and Arguello, JR and Arnold, SJ},
title = {{Molecular parentage analysis in experimental newt populations: The response of mating system measures to variation in the operational sex ratio}},
journal = {The American Naturalist},
year = {2004},
volume = {164},
number = {4},
pages = {444--456}
}
@article{Zajitschek:2009ju,
author = {Zajitschek, Felix and Bonduriansky, Russell and Zajitschek, Susanne R K and Brooks, Robert C},
title = {{Sexual Dimorphism in Life History: Age, Survival, and Reproduction in Male and Female Field Crickets Teleogryllus commodusunder Seminatural Conditions}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {6},
pages = {792--802},
month = jun
}
@article{Zhou:2013jy,
author = {Zhou, Qi and Ellison, Christopher E and Kaiser, Vera B and Alekseyenko, Artyom A and Gorchakov, andrey A and Bachtrog, Doris},
title = {{The Epigenome of Evolving \textit{Drosophila} Neo-Sex Chromosomes: Dosage Compensation and Heterochromatin Formation}},
journal = {PLOS Biology},
year = {2013},
volume = {11},
number = {11},
pages = {e1001711},
month = nov
}
@article{Zeng:2011ib,
author = {Zeng, Victor and Zeng, Victor and Villanueva, Karina E and Villanueva, Karina E and Ewen-Campen, Ben S and Ewen-Campen, Ben S and Alwes, Frederike and Alwes, Frederike and Browne, William E and Browne, William E and Extavour, Cassandra G and Extavour, Cassandra G},
title = {{\textit{De novo} assembly and characterization of a maternal and developmental transcriptome for the emerging model crustacean Parhyale hawaiensis.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {581},
month = nov
}
@article{Anonymous:2012ib,
author = {Gowaty, Patricia Adair and Kim, Yong-Kyu and anderson, Wyatt W},
title = {{No evidence of sexual selection in a repetition of Bateman's classic study of \textit{Drosophila} \textit{melanogaster}.}},
journal = {PNAS},
year = {2012},
volume = {109},
number = {29},
pages = {11740--11745},
month = jul
}
@article{Nickel:2008gb,
author = {Nickel, G C and Tefft, D and Adams, M D},
title = {{Human PAML browser: a database of positive selection on human genes using phylogenetic methods}},
journal = {Nucleic Acids Research},
year = {2007},
volume = {36},
number = {Database},
pages = {D800--D808},
month = dec
}
@article{Zhang:2013dx,
author = {Zhang, Yueliang and Li, Shuo and Xu, Lu and Guo, Hui fang and Zi, Jinyan and Wang, Lihua and He, Peng and Fang, Jichao},
title = {{Pesticide Biochemistry and Physiology}},
journal = {Pesticide Biochemistry and Physiology},
year = {2013},
volume = {106},
number = {1-2},
pages = {8--13},
month = jun
}
@article{Noor:2008iq,
author = {Noor, Mohamed A F and Parnell, Robin S and Grant, Bruce S},
title = {{A Reversible Color Polyphenism in American Peppered Moth (Biston betularia cognataria) Caterpillars}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {9},
pages = {e3142},
month = sep
}
@article{Rumbaugh:2010br,
author = {Rumbaugh, K P},
title = {{Fatal attraction: Bacterial bait lures worms to their death}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {38},
pages = {16411--16412},
month = sep
}
@article{Anonymous:W4wRR7tU,
title = {{Nature 2009 [Anon]}},
year = {2008},
pages = {1},
month = dec
}
@article{Berger:2011ks,
author = {Berger, G and Guetta, J and Klorin, G and Badarneh, R and Braun, E and Brod, V and Saleh, N A and Katz, A and Bitterman, H and Azzam, Z S},
title = {{Sepsis impairs alveolar epithelial function by downregulating Na-K-ATPase pump}},
journal = {AJP: Lung Cellular and Molecular Physiology},
year = {2011},
volume = {301},
number = {1},
pages = {L23--L30},
month = jul
}
@article{Summers:2008jr,
author = {Summers, Kyle and Crespi, Bernard},
title = {{The androgen receptor and prostate cancer: A role for sexual selection and sexual conflict?}},
journal = {Medical Hypotheses},
year = {2008},
volume = {70},
number = {2},
pages = {435--443},
month = jan
}
@article{Bao:2009ie,
author = {Bao, H and Guo, H and Wang, J and Zhou, R and Lu, X and Shi, S},
title = {{MapView: visualization of short reads alignment on a desktop computer}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {12},
pages = {1554--1555},
month = may
}
@article{Solensky:2009fi,
author = {Solensky, M J and Oberhauser, K S},
title = {{Male monarch butterflies, Danaus plexippus, adjust ejaculates in response to intensity of sperm competition}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {465--472},
month = feb
}
@article{Mlynarski:2009ec,
author = {Mlynarski, E E and Obergfell, C J and O'Neill, M J and O'Neill, R J},
title = {{Divergent patterns of breakpoint reuse in Muroid rodents}},
journal = {Mammalian Genome},
year = {2009},
volume = {21},
number = {1-2},
pages = {77--87},
month = dec
}
@article{Simola:2013fr,
author = {Simola, D F and Ye, C and Mutti, N S and Mutti, N S and Dolezal, K and Dolezal, K and Bonasio, R and Bonasio, R and Liebig, J and Reinberg, D and Berger, S L},
title = {{A chromatin link to caste identity in the carpenter ant Camponotus floridanus}},
journal = {Genome Research},
year = {2013},
volume = {23},
number = {3},
pages = {486--496},
month = mar
}
@article{Simmons:2013fs,
author = {Simmons, Leigh W and Firman, Renee C},
title = {{EXPERIMENTAL EVIDENCE FOR THE EVOLUTION OF THE MAMMALIAN BACULUM BY SEXUAL SELECTION}},
journal = {Evolution},
year = {2013},
pages = {n/a--n/a},
month = aug
}
@article{Anonymous:xuULpXVQ,
title = {{HyphyDocs}},
year = {2004},
pages = {1--57},
month = apr
}
@article{Henning:2013gc,
author = {Henning, Frederico and Henning, Frederico and Jones, Julia C and Jones, Julia C and Franchini, Paolo and Franchini, Paolo and Meyer, Axel},
title = {{Transcriptomics of morphological color change in polychromatic Midas cichlids}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {171}
}
@article{Ribble:2002wk,
author = {Ribble, David O and Wurtz, AE and McConnell, EK and Buegge, JJ and Welch, KC},
title = {{A comparison of home ranges of two species of \textit{Peromyscus} using trapping and radiotelemetry data}},
journal = {Journal of Mammalogy},
year = {2002},
volume = {83},
number = {1},
pages = {260--266}
}
@article{Chikhi:2013ep,
author = {Chikhi, R and Medvedev, P and Medvedev, P},
title = {{Informed and automated k-mer size selection for genome assembly}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
month = jun
}
@article{ALLARD:1991wn,
author = {ALLARD, MW and Honeycutt, RL},
title = {{RIBOSOMAL DNA VARIATION WITHIN AND BETWEEN SPECIES OF RODENTS, WITH EMPHASIS ON THE GENUS ONYCHOMYS}},
journal = {Molecular Biology and Evolution},
year = {1991},
volume = {8},
number = {1},
pages = {71--84}
}
@article{Ryan:2011ig,
author = {Ryan, M J},
title = {{The Brain as a Source of Selection on the Social Niche: Examples from the Psychophysics of Mate Choice in Tungara Frogs}},
journal = {Integrative and Comparative Biology},
year = {2011},
month = jul,
annote = {brain as a source of selection:
can something intrinsic be a source of seelction? exert selective pressure?
}
}
@article{Archie:2009go,
author = {Archie, Elizabeth A and Luikart, Gordon and Ezenwa, Vanessa O},
title = {{Infecting epidemiology with genetics: a new frontier in disease ecology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {1},
pages = {21--30},
month = jan
}
@article{Spurgin:2010dk,
author = {Spurgin, Lewis G and Richardson, David S},
title = {{How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1684},
pages = {979--988},
month = apr
}
@article{Ekblom:2007ds,
author = {Ekblom, Robert and Saether, Stein Are and Jacobsson, Par and Fiske, Peder and Sahlman, Tobias and Grahn, Mats and Kalas, John Atle and Hoglund, Jacob},
title = {{Spatial pattern of MHC class II variation in the great snipe (Gallinago media)}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {7},
pages = {1439--1451},
month = mar
}
@article{Hauber:2008ht,
author = {Hauber, M E and Moskat, C},
title = {{Shared parental care is costly for nestlings of common cuckoos and their great reed warbler hosts}},
journal = {Behavioral Ecology},
year = {2007},
volume = {19},
number = {1},
pages = {79--86},
month = nov
}
@article{Xu:2014kw,
author = {Xu, Z and Chen, H and Ling, J and Yu, D and Struffi, P and Small, S},
title = {{Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in \textit{Drosophila}}},
journal = {Genes {\&} Development},
year = {2014},
volume = {28},
number = {6},
pages = {608--621},
month = mar
}
@article{Ishida:2012co,
author = {Ishida, Yasuko and Ishida, Yasuko and Roca, Alfred L and Roca, Alfred L and Fratpietro, Stephen and Fratpietro, Stephen and Greenwood, Alex D and Greenwood, Alex D},
title = {{Successful genotyping of microsatellites in the woolly mammoth.}},
journal = {Journal of Heredity},
year = {2012},
volume = {103},
number = {3},
pages = {459--464},
month = apr
}
@article{Hoffmann:2003tu,
author = {Hoffmann, AA and Hoffmann, AA and Hallas, RJ and Hallas, RJ and Dean, JA and Dean, JA and Schiffer, M and Schiffer, M},
title = {{Low potential for climatic stress adaptation in a rainforest \textit{Drosophila} species}},
journal = {Science (New York, NY)},
year = {2003},
volume = {301},
number = {5629},
pages = {100--102}
}
@article{Guindon:2004fx,
author = {Guindon, S},
title = {{Modeling the site-specific variation of selection patterns along lineages}},
journal = {Proceedings of the National Academy of Sciences},
year = {2004},
volume = {101},
number = {35},
pages = {12957--12962},
month = aug
}
@article{Flintoft:2009kv,
author = {Flintoft, Louisa},
title = {{Transcriptomics: Revealing the extent of RNA editing}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {7},
pages = {426--427},
month = jul
}
@article{Lin:2008dw,
author = {Lin, H and Zhang, Z and Zhang, M Q and Ma, B and Li, M},
title = {{ZOOM! Zillions of oligos mapped}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {21},
pages = {2431--2437},
month = oct
}
@article{Li:2013cd,
author = {Li, Caiqin and Li, Caiqin and Wang, Yan and Wang, Yan and Huang, Xuming and Huang, Xuming and Li, Jiang and Li, Jiang and Wang, Huicong and Wang, Huicong and Li, Jianguo and Li, Jianguo},
title = {{\textit{De novo} assembly and characterization of fruit transcriptome in Litchi chinensis Sonn and analysis of differentially regulated genes in fruit in response to shading}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {552}
}
@article{Vouzis:2011fi,
author = {Vouzis, Panagiotis D and Vouzis, Panagiotis D and Sahinidis, Nikolaos V and Sahinidis, Nikolaos V},
title = {{GPU-BLAST: using graphics processors to accelerate protein sequence alignment.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {2},
pages = {182--188},
month = jan
}
@article{Wade:2004ud,
author = {Wade, MJ and Shuster, SM},
title = {{Sexual selection: Harem size and the variance in male reproductive success}},
journal = {The American Naturalist},
year = {2004},
volume = {164},
number = {4},
pages = {E83--E89}
}
@article{Abbott:2010kp,
author = {Abbott, W G H and Tsai, P and Leung, E and Trevarton, A and ofanoa, M and Hornell, J and Gane, E J and Munn, S R and Rodrigo, A G},
title = {{Associations between HLA Class I Alleles and Escape Mutations in the Hepatitis B Virus Core Gene in New Zealand-Resident Tongans}},
journal = {Journal of Virology},
year = {2009},
volume = {84},
number = {1},
pages = {621--629},
month = dec
}
@article{Landry:1999ul,
author = {Landry, PA and Landry, PA and Lapointe, FJ},
title = {{The genetic heterogeneity of deer mouse populations (\textit{Peromyscus} \textit{maniculatus}) in an insular landscape}},
journal = {Researches on Population Ecology},
year = {1999},
volume = {41},
number = {3},
pages = {263--268}
}
@article{Bond:1999vf,
author = {Bond, ML and Wolff, JO},
title = {{Does access to females or competition among males limit male home-range size in a promiscuous rodent?}},
journal = {Journal of Mammalogy},
year = {1999},
volume = {80},
number = {4},
pages = {1243--1250}
}
@article{Slamovits:2001tc,
author = {Slamovits, CH and Slamovits, CH and Cook, JA and Lessa, EP and Rossi, MS and Rossi, MS},
title = {{Recurrent amplifications and deletions of satellite DNA accompanied chromosomal diversification in south American tuco-tucos (genus \textit{Ctenomys}, Rodentia : Octodontidae): A phylogenetic approach}},
journal = {Molecular Biology and Evolution},
year = {2001},
volume = {18},
number = {9},
pages = {1708--1719}
}
@article{Waisberg:2007dh,
author = {Waisberg, Michael and Lobo, Francisco P and Cerqueira, Gustavo C and Passos, Liana KJ and Carvalho, Omar S and Franco, Gloria R and El-Sayed, Najib M},
title = {{Microarray analysis of gene expression induced by sexual contact in Schistosoma mansoni}},
journal = {BMC Genomics},
year = {2007},
volume = {8},
number = {1},
pages = {181}
}
@article{Rusu:2004da,
author = {Rusu, Alinas and Krackow, Sven},
title = {{Kin-preferential cooperation, dominance-dependent reproductive skew, and competition for mates in communally nesting female house mice}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {56},
number = {3},
month = apr
}
@article{Brommer:2007bsa,
author = {Brommer, J E and Korsten, P and Bouwman, K M and Berg, M L and Komdeur, J},
title = {{Is extrapair mating random? On the probability distribution of extrapair young in avian broods}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {5},
pages = {895--904},
month = jul
}
@article{Petrie:1998tp,
author = {Petrie, M and Kempenaers, B},
title = {{Extra-pair paternity in birds: explaining variation between species and populations}},
journal = {Trends In Ecology {\&} Evolution},
year = {1998},
volume = {13},
number = {2},
pages = {52--58}
}
@article{Murray:1999wb,
author = {Murray, BW and Michaud, R and White, BN},
title = {{Allelic and haplotype variation of major histocompatibility complex class II DRB1 and DQB loci in the St Lawrence beluga (Delphinapterus leucas)}},
journal = {Molecular Ecology},
year = {1999},
volume = {8},
number = {7},
pages = {1127--1139}
}
@article{Wang:2014jb,
author = {Wang, T and Wei, J J and Sabatini, D M and Lander, E S},
title = {{Genetic Screens in Human Cells Using the CRISPR-Cas9 System}},
journal = {Science (New York, NY)},
year = {2014},
volume = {343},
number = {6166},
pages = {80--84},
month = jan
}
@article{Stamatakis:2008tb,
author = {Stamatakis, A},
title = {{RAxML Manual 7.0.4}},
year = {2008},
pages = {1--25},
month = may
}
@article{Drnevich:2004dj,
author = {Drnevich, J M and Reedy, M M and Ruedi, E A and Rodriguez-Zas, S and Hughes, K A},
title = {{Quantitative evolutionary genomics: differential gene expression and male reproductive success in \textit{Drosophila} \textit{melanogaster}}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2004},
volume = {271},
number = {1554},
pages = {2267--2273},
month = nov
}
@article{Dobzhansky:1940vp,
author = {Dobzhansky, T and Dobzhansky, T},
title = {{Speciation as a stage in evolutionary divergence}},
journal = {The American Naturalist},
year = {1940},
volume = {74},
pages = {312--321}
}
@article{anderson:2010dp,
author = {anderson, Michael G and Brunton, Dianne H and Hauber, Mark E},
title = {{Species specificity of grey warbler begging solicitation and alarm calls revealed by nestling responses to playbacks}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {2},
pages = {401--409},
month = feb
}
@article{Nagakura:2010kn,
author = {Nagakura, Ayano and Hiyama, Takeshi Y and Noda, Masaharu},
title = {{Neuroscience Letters}},
journal = {Neuroscience Letters},
year = {2010},
volume = {472},
number = {3},
pages = {161--165},
month = mar
}
@article{Rosenblum:2009ej,
author = {Rosenblum, Erica Bree and Poorten, Thomas J and Settles, Matthew and Murdoch, Gordon K and Robert, Jacques and Maddox, Nicole and Eisen, Michael B},
title = {{Genome-Wide Transcriptional Response of Silurana (Xenopus) tropicalis to Infection with the Deadly Chytrid Fungus}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6494},
month = aug
}
@article{Trainor:2008hx,
author = {Trainor, Brian C and Finy, M Sima and Nelson, Randy J},
title = {{Paternal aggression in a biparental mouse: Parallels with maternal aggression}},
journal = {Hormones and Behavior},
year = {2008},
volume = {53},
number = {1},
pages = {200--207},
month = jan
}
@article{Harrison:es,
author = {Harrison, Hugo B and Harrison, Hugo B and Saenz-Agudelo, Pablo and Saenz-Agudelo, Pablo and Planes, Serge and Planes, Serge and Jones, Geoffrey P and Jones, Geoffrey P and Berumen, Michael L and Berumen, Michael L},
title = {{Relative accuracy of three common methods of parentage analysis in natural populations}},
journal = {Molecular Ecology},
volume = {22},
pages = {1158--1170}
}
@article{Martins:2013gu,
author = {Martins, Ayana B and Martins, Ayana B and de Aguiar, Marcus A M and de Aguiar, Marcus A M and Bar-Yam, Yaneer},
title = {{Evolution and stability of ring species.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2013},
volume = {110},
number = {13},
pages = {5080--5084},
month = mar
}
@article{Mackenzie:1995vy,
author = {Mackenzie, A and Mackenzie, A and Reynolds, J D and Reynolds, J D and Brown, V J and Brown, V J and Sutherland, W J and Sutherland, W J},
title = {{Variation in Male Mating Success on Leks}},
journal = {The American Naturalist},
year = {1995},
volume = {145},
number = {4},
pages = {633--652},
month = apr
}
@article{Garrido:2008hw,
author = {Garrido, L Ron and Birchmeier, A N and Munilla, S and Cantet, R J C},
title = {{Estimation of effective population size using bivariate discrete distributions for modeling family size in beef cattle}},
journal = {Livestock Science},
year = {2008},
volume = {117},
number = {1},
pages = {43--51},
month = aug
}
@article{Metzker:2009bk,
author = {Metzker, Michael L},
title = {{Sequencing in real time}},
journal = {Nature Biotechnology},
year = {2009},
volume = {27},
number = {2},
pages = {150--151},
month = feb
}
@article{Bozinovic:2003eg,
author = {Bozinovic, Francisco and Gallardo, Pedro A and Visser, G Henk and Cort{\'e}s, Arturo},
title = {{Seasonal acclimatization in water flux rate, urine osmolality and kidney water channels in free-living degus: molecular mechanisms, physiological processes and ecological implications}},
journal = {Journal of Experimental Biology},
year = {2003},
volume = {206},
number = {17},
pages = {2959--2966},
month = sep
}
@article{Anonymous:2012fa,
author = {Leary, Greg P and Allen, Jean E and Bunger, Peggy L and Luginbill, Jena B and Linn, Charles E and Macallister, Irene E and Kavanaugh, Michael P and Wanner, Kevin W},
title = {{Single mutation to a sex pheromone receptor provides adaptive specificity between closely related moth species}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2012},
volume = {109},
number = {35},
pages = {14081--14086}
}
@article{Hatem:2013je,
author = {Hatem, Ayat and Hatem, Ayat and Bozda, Doruk and Bozda, Doruk and Toland, Amanda E and Toland, Amanda E and {\c C}ataly{\"u}rek, {\"U}mit V and {\c C}ataly{\"u}rek, {\"U}mit V},
title = {{Benchmarking short sequence mapping tools}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {184}
}
@article{Wang:2012gi,
author = {Wang, J},
title = {{Computationally Efficient Sibship and Parentage Assignment from Multilocus Marker Data}},
journal = {Genetics},
year = {2012},
volume = {191},
number = {1},
pages = {183--194},
month = may
}
@article{GontardDanek:1999vx,
author = {Gontard-Danek, MC and Moller, AP},
title = {{The strength of sexual selection: a meta-analysis of bird studies}},
journal = {Behavioral Ecology},
year = {1999},
volume = {10},
number = {5},
pages = {476--486}
}
@article{Wandeler:2007es,
author = {Wandeler, Peter and Hoeck, Paquita E A and Keller, Lukas F},
title = {{Back to the future: museum specimens in population genetics}},
journal = {Trends In Ecology {\&} Evolution},
year = {2007},
volume = {22},
number = {12},
pages = {634--642},
month = dec
}
@article{MacLean:2009er,
title = {{In the news}},
journal = {Nature Reviews Microbiology},
year = {2009},
volume = {7},
number = {2},
pages = {96--97},
month = feb
}
@article{Zhuang:2009dt,
author = {Zhuang, H and Chien, M S and Matsunami, H},
title = {{Dynamic functional evolution of an odorant receptor for sex-steroid-derived odors in primates}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {50},
pages = {21247--21251},
month = dec
}
@article{Kvennefors:2010fb,
author = {Kvennefors, E Charlotte E and Sampayo, Eugenia and Ridgway, Tyrone and Barnes, andrew C and Hoegh-Guldberg, Ove},
title = {{Bacterial Communities of Two Ubiquitous Great Barrier Reef Corals Reveals Both Site- and Species-Specificity of Common Bacterial Associates}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {4},
pages = {e10401},
month = apr
}
@article{Loridon:2012be,
author = {Loridon, Karine and Burgarella, Concetta and Chantret, Nathalie and Martins, Fr{\'e}d{\'e}ric and Gouzy, J{\'e}r{\^o}me and Prosp{\'e}ri, Jean-Marie and Ronfort, Jo{\"e}lle},
title = {{Single-nucleotide polymorphism discovery and diversity in the model legume Medicago truncatula}},
journal = {Molecular Ecology Resources},
year = {2012},
volume = {13},
number = {1},
pages = {84--95},
month = sep
}
@article{Macke:2011cg,
author = {Macke, E and Macke, E and Magalhaes, S and Magalhaes, S and Bach, F and Bach, F and Olivieri, I and Olivieri, I},
title = {{Experimental Evolution of Reduced Sex Ratio Adjustment Under Local Mate Competition}},
journal = {Science (New York, NY)},
year = {2011},
month = nov
}
@article{Dalca:2010hd,
author = {Dalca, A V and Brudno, M},
title = {{Genome variation discovery with high-throughput sequencing data}},
journal = {Briefings In Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {3--14},
month = jan
}
@article{Brown:2012be,
author = {Brown, Dennis and Bouley, Richard and P{\u{a}}unescu, Teodor G and Breton, Sylvie and Lu, Hua A J},
title = {{New insights into the dynamic regulation of water and acid-base balance by renal epithelial cells.}},
journal = {American journal of physiology. Cell physiology},
year = {2012},
volume = {302},
number = {10},
pages = {C1421--33},
month = may
}
@article{vanOers:2008kl,
author = {van Oers, Kees and Drent, Pieter Jan and Drent, Pieter Jan and Dingemanse, Niels Jeroen and Dingemanse, Niels Jeroen and Kempenaers, Bart},
title = {{Personality is associated with extrapair paternity in great tits, Parus major}},
journal = {Animal Behaviour},
volume = {76},
pages = {555--563}
}
@article{Wang:2013gza,
author = {Wang, J},
title = {{An improvement on the maximum likelihood reconstruction of pedigrees from marker data}},
journal = {Heredity},
year = {2013},
volume = {111},
number = {2},
pages = {165--174},
month = apr
}
@article{CluttonBrock:2006ii,
author = {Clutton-Brock, T H and Isvaran, K},
title = {{Paternity loss in contrasting mammalian societies}},
journal = {Biology Letters},
year = {2006},
volume = {2},
number = {4},
pages = {513--516},
month = dec
}
@article{Shih:1996vi,
author = {Shih, HM and Shih, HM and Goldman, PS and Goldman, PS and DeMaggio, AJ and DeMaggio, AJ and Hollenberg, SM and Hollenberg, SM and Goodman, RH and Goodman, RH and Hoekstra, MF and Hoekstra, MF},
title = {{A positive genetic selection for disrupting protein-protein interactions: Identification of CREB mutations that prevent association with the coactivator CBP}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1996},
volume = {93},
number = {24},
pages = {13896--13901}
}
@book{Anonymous:2010ur,
editor = {Bafna, Vineet and Sahinalp, S Cenk},
title = {{Research in Computational Molecular Biology}},
publisher = {Springer Berlin Heidelberg},
year = {2011},
volume = {6577},
series = {Lecture Notes in Computer Science},
address = {Berlin, Heidelberg}
}
@article{Brommer:2009jy,
author = {Brommer, J E and Rattiste, K and Wilson, A},
title = {{The rate of ageing in a long-lived bird is not heritable}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {4},
pages = {363--370},
month = sep
}
@article{Haney:2014je,
author = {Haney, Robert A and Ayoub, Nadia A and Clarke, Thomas H and Hayashi, Cheryl Y and Garb, Jessica E},
title = {{Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics}},
year = {2014},
volume = {15},
number = {1},
pages = {1--18},
month = jun
}
@article{Didelot:2009gy,
author = {Didelot, X and Lawson, D and Falush, D},
title = {{SimMLST: simulation of multi-locus sequence typing data under a neutral model}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {11},
pages = {1442--1444},
month = may
}
@article{Mulard:2009dl,
author = {Mulard, Herv{\'e} and Danchin, Etienne and Talbot, Sandra L and Ramey, andrew M and Hatch, Scott A and White, Jo{\"e}l F and Helfenstein, Fabrice and Wagner, Richard H},
title = {{Evidence that pairing with genetically similar mates is maladaptive in a monogamous bird}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {147}
}
@article{Roughgarden:2010hx,
author = {Roughgarden, Joan and Ak{\c c}ay, Erol},
title = {{Final response: sexual selection needs an alternative}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {3},
pages = {e18--e23},
month = mar
}
@article{Mulder:1994wi,
author = {Mulder, RA and Dunn, PO and Cockburn, A and Lazenbycohen, KA and Howell, MJ},
title = {{Helpers Liberate Female Fairy-Wrens From Constraints on Extra-Pair Mate Choice}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1994},
volume = {255},
number = {1344},
pages = {223--229}
}
@article{Burt:2000ti,
author = {Burt, A and Burt, A},
title = {{Perspective: Sex, recombination, and the efficacy of selection - Was Weismann right?}},
journal = {Evolution},
year = {2000},
volume = {54},
number = {2},
pages = {337--351}
}
@article{Taylor:2011cj,
author = {Taylor, Z S and Taylor, Z S and Hoffman, S M G and Hoffman, S M G},
title = {{Microsatellite Genetic Structure and Cytonuclear Discordance in Naturally Fragmented Populations of Deer Mice (\textit{Peromyscus} \textit{maniculatus})}},
journal = {Journal of Heredity},
year = {2011},
volume = {103},
number = {1},
pages = {71--79},
month = dec
}
@article{Clarke:2014iq,
author = {Clarke, Thomas H and Garb, Jessica E and Hayashi, Cheryl Y and Haney, Robert A and Lancaster, Alexander K and Corbett, Susan and Ayoub, Nadia A},
title = {{Multi-tissue transcriptomics of the black widow spider reveals expansions, co-options, and functional processes of the silk gland gene toolkit}},
year = {2014},
volume = {15},
number = {1},
pages = {1--17},
month = jun
}
@article{Sirovich:2009kt,
author = {Sirovich, Lawrence and Stoeckle, Mark Y and Zhang, Yu},
title = {{A Scalable Method for Analysis and Display of DNA Sequences}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7051},
month = oct
}
@article{Bonin:2009iu,
author = {Bonin, Aurelie and Paris, Margot and Tetreau, Guillaume and David, Jean-Philippe and Despres, Laurence},
title = {{Candidate genes revealed by a genome scan for mosquito resistance to a bacterial insecticide: sequence and gene expression variations}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {551}
}
@article{Kelly:2010ic,
author = {Kelly, R P and Oliver, T A and Sivasundar, A and Palumbi, S R},
title = {{A Method for Detecting Population Genetic Structure in Diverse, High Gene-Flow Species}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {4},
pages = {423--436},
month = jun
}
@article{CluttonBrock:2010do,
author = {Clutton-Brock, Tim},
title = {{We do not need a Sexual Selection 2.0{\textemdash}nor a theory of Genial Selection}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {3},
pages = {e7--e10},
month = mar
}
@article{Bailly:2009jy,
author = {Bailly, J L and Mirand, A and Henquell, C and Archimbaud, C and Chambon, M and Charbonne, F and Traore, O and Peigue-Lafeuille, H},
title = {{Phylogeography of circulating populations of human echovirus 30 over 50 years: Nucleotide polymorphism and signature of purifying selection in the VP1 capsid protein gene}},
journal = {Infection, Genetics and Evolution},
year = {2009},
volume = {9},
number = {4},
pages = {699--708},
month = jul
}
@article{Arnqvist:2006ba,
journal = {Ethology},
year = {2006},
volume = {112},
number = {8},
month = aug
}
@article{Simmons:2001we,
author = {Simmons, LW},
title = {{The evolution of polyandry: an examination of the genetic incompatibility and good-sperm hypotheses.}},
journal = {Journal of Evolutionary Biology},
year = {2001},
volume = {14},
number = {4},
pages = {585}
}
@article{Neher:2010dw,
author = {Neher, Richard A and Leitner, Thomas},
title = {{Recombination Rate and Selection Strength in HIV Intra-patient Evolution}},
journal = {PLOS Computational Biology},
year = {2010},
volume = {6},
number = {1},
pages = {e1000660},
month = jan
}
@article{Benson:2007de,
author = {Benson, D A and Karsch-Mizrachi, I and Lipman, D J and Ostell, J and Wheeler, D L},
title = {{GenBank}},
journal = {Nucleic Acids Research},
year = {2007},
volume = {36},
number = {Database},
pages = {D25--D30},
month = dec
}
@article{Chen:2011ba,
author = {Chen, Zhongxue and Chen, Zhongxue and Liu, Jianzhong and Liu, Jianzhong and Ng, Hon Keung Tony and Ng, Hon Keung Tony and Nadarajah, Saralees and Nadarajah, Saralees and Kaufman, Howard L and Kaufman, Howard L and Yang, Jack Y and Yang, Jack Y and Deng, Youping and Deng, Youping},
title = {{Statistical methods on detecting differentially expressed genes for RNA-seq data}},
journal = {BMC Systems Biology},
year = {2011},
volume = {5},
number = {Suppl 3},
pages = {S1},
month = dec
}
@article{Seney:2009dw,
author = {Seney, Marianne L and Kelly, Diane A and Goldman, Bruce D and {\v{S}}umbera, Radim and Forger, Nancy G},
title = {{Social Structure Predicts Genital Morphology in African Mole-Rats}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7477},
month = oct
}
@article{Pruesse:2007jc,
author = {Pruesse, Elmar and Quast, Christian and Knittel, Katrin and Fuchs, Bernhard M and Ludwig, Wolfgang and Peplies, Joerg and Gloeckner, Frank Oliver},
title = {{SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB}},
journal = {Nucleic Acids Research},
year = {2007},
volume = {35},
number = {21},
pages = {7188--7196}
}
@article{ShellmanReeve:2001gg,
author = {Shellman-Reeve, Janet S},
title = {{Genetic relatedness and partner preference in a monogamous, wood-dwelling termite}},
journal = {Animal Behaviour},
year = {2001},
volume = {61},
number = {5},
pages = {869--876},
month = may
}
@article{Genovese:2010hg,
author = {Genovese, G and Friedman, D J and Ross, M D and Lecordier, L and Uzureau, P and Freedman, B I and Bowden, D W and Langefeld, C D and Oleksyk, T K and Uscinski Knob, A L and Bernhardy, A J and Hicks, P J and Nelson, G W and Vanhollebeke, B and Winkler, C A and Kopp, J B and Pays, E and Pollak, M R},
title = {{Association of Trypanolytic ApoL1 Variants with Kidney Disease in African Americans}},
journal = {Science (New York, NY)},
year = {2010},
volume = {329},
number = {5993},
pages = {841--845},
month = aug
}
@article{Delport:2010kl,
author = {Delport, W and Poon, A F Y and Frost, S D W and Kosakovsky Pond, S L},
title = {{Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {19},
pages = {2455--2457},
month = sep
}
@article{Scharf:1989ul,
author = {Scharf, S J and Freidmann, A and Steinman, L and Brautbar, C and Erlich, H A},
title = {{Specific HLA-DQB and HLA-DRB1 alleles confer susceptibility to pemphigus vulgaris}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1989},
volume = {86},
number = {16},
pages = {6215--6219},
month = aug
}
@article{Gu:2013kb,
author = {Gu, Z Y and Gu, Z Y and Sun, S S and Sun, S S and Wang, Y H and Wang, Y H and Wang, B B and Wang, B B and Xie, Y and Xie, Y and Ma, L and Wang, J M and Wang, J M and Shen, W D and Shen, W D and Li, B and Li, B},
title = {{Pesticide Biochemistry and Physiology}},
journal = {Pesticide Biochemistry and Physiology},
year = {2013},
volume = {105},
number = {1},
pages = {36--43},
month = jan
}
@article{Wittkopp:2009jb,
author = {Wittkopp, P J and Stewart, E E and Arnold, L L and Neidert, A H and Haerum, B K and Thompson, E M and Akhras, S and Smith-Winberry, G and Shefner, L},
title = {{Intraspecific Polymorphism to Interspecific Divergence: Genetics of Pigmentation in \textit{Drosophila}}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5952},
pages = {540--544},
month = oct
}
@article{Dewsbury:2005ti,
author = {Dewsbury, DA},
title = {{The Darwin-Bateman Paradigm in historical context}},
journal = {Integrative and Comparative Biology},
year = {2005},
volume = {45},
number = {5},
pages = {831--837}
}
@article{Westerdahl:2011hm,
author = {Westerdahl, H and Asghar, M and Hasselquist, D and Bensch, S},
title = {{Quantitative disease resistance: to better understand parasite-mediated selection on major histocompatibility complex}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
volume = {279},
number = {1728},
pages = {577--584},
month = dec
}
@article{Wu:2000wu,
author = {Wu, MS and Tani, K and Sugiyama, H and Hibino, H and Izawa, K and Tanabe, T and Nakazaki, Y and Ishii, H and Ohashi, J and Hohjoh, H and Iseki, T and Tojo, A and Nakamura, Y and Tanioka, Y and Tokunaga, K and Asano, S},
title = {{MHC (major histocompatibility complex)-DRB genes and polymorphisms in common marmoset}},
journal = {Journal of Molecular Evolution},
year = {2000},
volume = {51},
number = {3},
pages = {214--222}
}
@article{Birkhead:1988tg,
author = {Birkhead, TR and PELLATT, J and HUNTER, FM},
title = {{EXTRA-PAIR COPULATION AND SPERM COMPETITION IN THE ZEBRA FINCH}},
journal = {Nature},
year = {1988},
volume = {334},
number = {6177},
pages = {60--62}
}
@article{Knapp:2005gb,
author = {Knapp, Leslie A},
title = {{Facts, faeces and setting standards for the study of MHC genes using noninvasive samples}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {5},
pages = {1597--1599},
month = apr
}
@article{Verts:2002wq,
author = {Verts, BJ and Carraway, LN},
title = {{Neotoma lepida}},
journal = {Mammalian Species},
year = {2002},
volume = {699},
number = {1},
pages = {1--12}
}
@article{Dinsdale:2008cp,
author = {Dinsdale, Elizabeth A and Edwards, Robert A and Hall, Dana and Angly, Florent and Breitbart, Mya and Brulc, Jennifer M and Furlan, Mike and Desnues, Christelle and Haynes, Matthew and Li, Linlin and Mcdaniel, Lauren and Moran, Mary Ann and Nelson, Karen E and Nilsson, Christina and Olson, Robert and Paul, John and Brito, Beltran Rodriguez and Ruan, Yijun and Swan, Brandon K and Stevens, Rick and Valentine, David L and Thurber, Rebecca Vega and Wegley, Linda and White, Bryan A and Rohwer, Forest},
title = {{Functional metagenomic profiling of nine biomes}},
journal = {Nature},
year = {2008},
volume = {455},
number = {7214},
pages = {830--830},
month = oct
}
@article{Huang:2001ti,
author = {Huang, Y and Tracy, R and Walsberg, G E and Makkinje, A and Fang, P and Brown, D and Van Hoek, A N},
title = {{Absence of aquaporin-4 water channels from kidneys of the desert rodent \textit{Dipodomys} \textit{merriami} \textit{merriami}}},
journal = {American Journal of Physiology-Renal Physiology},
year = {2001},
volume = {280},
number = {5},
pages = {F794--F802}
}
@article{Flicek:2009ww,
author = {Flicek, P},
title = {{The Need for Speed}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {212},
pages = {1--4},
month = mar
}
@article{Briceno:2009co,
author = {Brice{\~n}o, R D and Eberhard, W G},
title = {{Experimental modifications imply a stimulatory function for male tsetse fly genitalia, supporting cryptic female choice theory}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {7},
pages = {1516--1525},
month = jul
}
@article{Owen:2011jea,
author = {Owen, Christina R and Bradshaw, H D},
title = {{Induced mutations affecting pollinator choice in Mimulus lewisii (Phrymaceae)}},
journal = {Arthropod-Plant Interactions},
year = {2011},
volume = {5},
number = {3},
pages = {235--244},
month = apr
}
@article{Daley:2013ef,
author = {Daley, Timothy and Daley, Timothy and Smith, andrew D and Smith, andrew D},
title = {{Predicting the molecular complexity of sequencing libraries}},
journal = {Nature Methods},
year = {2013},
month = feb
}
@article{Price:2010eg,
author = {Price, Morgan N and Dehal, Paramvir S and Arkin, Adam P},
title = {{FastTree 2 {\textendash} Approximately Maximum-Likelihood Trees for Large Alignments}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9490},
month = mar
}
@article{Parks:2009bd,
author = {Parks, Matthew and Cronn, Richard and Liston, Aaron},
title = {{Increasing phylogenetic resolution at low taxonomic levels using massively parallel sequencing of chloroplast genomes}},
journal = {BMC biology},
year = {2009},
volume = {7},
number = {1},
pages = {84}
}
@article{Krueger:2008ki,
author = {Krueger, Terry R and Williams, Dean A and Searcy, William A},
title = {{THE GENETIC MATING SYSTEM OF A TROPICAL TANAGER}},
journal = {The Condor},
year = {2008},
volume = {110},
number = {3},
pages = {559--562},
month = aug
}
@article{Coop:2007jl,
author = {Coop, Graham and Przeworski, Molly},
title = {{An evolutionary view of human recombination}},
journal = {Nature Reviews Genetics},
year = {2006},
volume = {8},
number = {1},
pages = {23--34},
month = dec
}
@article{Finlay:1997tr,
author = {Finlay, BB and Falkow, S},
title = {{Common themes in microbial pathogenicity revisited}},
journal = {Microbiology and Molecular Biology Reviews},
year = {1997},
volume = {61},
number = {2},
pages = {136--{\&}}
}
@article{Higasa:2009ji,
author = {Higasa, Koichiro and Kukita, Yoji and Kato, Kiyoko and Wake, Norio and Tahira, Tomoko and Hayashi, Kenshi},
title = {{Evaluation of Haplotype Inference Using Definitive Haplotype Data Obtained from Complete Hydatidiform Moles, and Its Significance for the Analyses of Positively Selected Regions}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {5},
pages = {e1000468},
month = may
}
@article{Timmermans:2010bj,
author = {Timmermans, M J T N and Dodsworth, S and Culverwell, C L and Bocak, L and Ahrens, D and Littlewood, D T J and Pons, J and Vogler, A P},
title = {{Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics}},
journal = {Nucleic Acids Research},
year = {2010},
volume = {38},
number = {21},
pages = {e197--e197},
month = nov
}
@article{Aarssen:2009cw,
author = {Aarssen, Lonnie W and Lortie, Christopher J and Budden, Amber E and Koricheva, Julia and Leimu, Roosa and Tregenza, Tom and Kullberg, Cilla},
title = {{Does Publication in Top-Tier Journals Affect Reviewer Behavior?}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6283},
month = jul
}
@article{SchoppeeBortz:2011go,
author = {Schoppee Bortz, Pamela D and Schoppee Bortz, Pamela D and Wamhoff, Brian R and Wamhoff, Brian R},
title = {{Chromatin Immunoprecipitation (ChIP): Revisiting the Efficacy of Sample Preparation, Sonication, Quantification of Sheared DNA, and Analysis via PCR}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {10},
pages = {e26015},
month = oct
}
@article{Townsend:2009td,
author = {Townsend, S and Newey, S and Thirgood, S and Matthews, L},
title = {{Can parasites drive population cycles in mountain hares?}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2009}
}
@article{RICHARDSON:1986un,
author = {RICHARDSON, H and VERBEEK, NAM},
title = {{DIET SELECTION AND OPTIMIZATION BY NORTHWESTERN CROWS FEEDING ON JAPANESE LITTLENECK CLAMS}},
journal = {Ecology},
year = {1986},
volume = {67},
number = {5},
pages = {1219--1226}
}
@article{DietrichBischoff:2006ca,
author = {Dietrich-Bischoff, Verena and Schmoll, Tim and Winkel, Wolfgang and Krackow, Sven and Lubjuhn, Thomas},
title = {{Extra-pair paternity, offspring mortality and offspring sex ratio in the socially monogamous coal tit (Parus ater)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {60},
number = {4},
pages = {563--571},
month = jun
}
@article{Millar:2008in,
author = {Millar, Craig D and Huynen, Leon and Subramanian, Sankar and Mohandesan, Elmira and Lambert, David M},
title = {{New developments in ancient genomics}},
journal = {Trends In Ecology {\&} Evolution},
year = {2008},
volume = {23},
number = {7},
pages = {386--393},
month = jul
}
@article{Bromham:2000vd,
author = {Bromham, L and Penny, D and Rambaut, A and Hendy, MD},
title = {{The power of relative rates tests depends on the data}},
journal = {Journal of Molecular Evolution},
year = {2000},
volume = {50},
number = {3},
pages = {296--301}
}
@article{Gopukumar:2005wg,
author = {Gopukumar, N and Gopukumar, N and Karuppudurai, T and Karuppudurai, T and Nathan, PT and Nathan, PT and Sripathi, K and Sripathi, K and Arivarignan, G and Arivarignan, G and Balasingh, J and Balasingh, J},
title = {{Solitary adult males in a polygynous-mating bat (Cynopterus sphinx): A forced option or a strategy?}},
journal = {Journal of Mammalogy},
year = {2005},
volume = {86},
number = {2},
pages = {281--286}
}
@article{STALLONE:1988tl,
author = {STALLONE, JN and BRAUN, EJ},
title = {{REGULATION OF PLASMA ANTIDIURETIC-HORMONE IN THE DEHYDRATED KANGAROO RAT (DIPODOMYS-SPECTABILIS M)}},
journal = {General and Comparative Endocrinology},
year = {1988},
volume = {69},
number = {1},
pages = {119--127}
}
@article{denBoer:2010ix,
author = {den Boer, S P A and Baer, B and Boomsma, J J},
title = {{Seminal Fluid Mediates Ejaculate Competition in Social Insects}},
journal = {Science (New York, NY)},
year = {2010},
volume = {327},
number = {5972},
pages = {1506--1509},
month = mar
}
@article{Webster:2007tm,
author = {Webster, Michael S and Tarvin, Keith A and Tuttle, Elaina M and Pruett-Jones, Stephen},
title = {{Promiscuity drives sexual selection in a socially monogamous bird}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {9},
pages = {2205--2211}
}
@article{Fitzpatrick:2005vd,
author = {Fitzpatrick, M.J. and Ben-Shahar, Y and Smid, H.M. and Vet, L.E.M. and Vet, L.E.M. and Robinson, G E and Sokolowski, M.B. and Sokolowski, M.B.},
title = {{Candidate genes for behavioural ecology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2005},
volume = {20},
number = {2},
pages = {96--104}
}
@article{Christidis:1997vc,
author = {Christidis, L and Schodde, R},
title = {{Relationships within the Australo-Papuan fairy-wrens (Aves: Malurinae): An evaluation of the utility of allozyme data}},
journal = {Australian Journal of Zoology},
year = {1997},
volume = {45},
number = {2},
pages = {113--129}
}
@article{Kaminski:2012cm,
author = {Kaminski, D and Geisler, C},
title = {{Survival Analysis of Faculty Retention in Science and Engineering by Gender}},
journal = {Science (New York, NY)},
year = {2012},
volume = {335},
number = {6070},
pages = {864--866},
month = feb
}
@article{Manjerovic:2008fl,
author = {Manjerovic, M B and Kinahan, A A and Waterman, J M and Bennett, N C and Bateman, P W},
title = {{Structure and allometry of genitalia in males and females of a social African ground squirrel with high polygynandry}},
journal = {Journal of Zoology},
year = {2008},
volume = {275},
number = {4},
pages = {375--380},
month = aug
}
@article{Kilduff:2008kv,
author = {Kilduff, T S and Kilduff, T S and Lein, E S and de la Iglesia, H and de la Iglesia, H and Sakurai, T and Sakurai, T and Fu, Y h and Fu, Y h and Shaw, P and Shaw, P},
title = {{New Developments in Sleep Research: Molecular Genetics, Gene Expression, and Systems Neurobiology}},
journal = {Journal of Neuroscience},
year = {2008},
volume = {28},
number = {46},
pages = {11814--11818},
month = nov
}
@article{GarciaGonzalez:2005vf,
author = {Garcia-Gonzalez, F and Simmons, LW},
title = {{Sperm viability matters in insect sperm competition}},
journal = {Current biology : CB},
year = {2005},
volume = {15},
number = {3},
pages = {271--275}
}
@article{Yamane:2005dx,
author = {Yamane, Takashi and Miyatake, Takahisa},
title = {{Intra-specific variation in strategic ejaculation according to level of polyandry in Callosobruchus chinensis}},
journal = {Journal of Insect Physiology},
year = {2005},
volume = {51},
number = {11},
pages = {1240--1243},
month = nov
}
@article{Sampson:2012hb,
author = {Sampson, A K and Moritz, K M and Denton, K M},
title = {{Postnatal Ontogeny of Angiotensin Receptors and ACE2 in Male and Female Rats}},
journal = {GENM},
year = {2012},
volume = {9},
number = {1},
pages = {21--32},
month = feb
}
@article{Luttrell:2012jz,
author = {Luttrell, S and Luttrell, S and Konikoff, C and Konikoff, C and Byrne, A and Byrne, A and Bengtsson, B and Bengtsson, B and Swalla, B J and Swalla, B J},
title = {{Ptychoderid Hemichordate Neurulation without a Notochord}},
journal = {Integrative and Comparative Biology},
year = {2012},
volume = {52},
number = {6},
pages = {829--834},
month = nov
}
@article{Lupold:ud,
author = {L{\"u}pold, S and L{\"u}pold, S and Calhim, S and Calhim, S and Immler, S and Immler, S and Birkhead, TR},
title = {{Sperm morphology and sperm velocity in passerine birds}},
journal = {Proceedings of The Royal Society B-Biological Sciences}
}
@article{MCDONALD:1994ug,
author = {MCDONALD, DB and Potts, WK},
title = {{COOPERATIVE DISPLAY AND RELATEDNESS AMONG MALES IN A LEK-MATING BIRD}},
journal = {Science (New York, NY)},
year = {1994},
volume = {266},
number = {5187},
pages = {1030--1032}
}
@article{Li:2011eb,
author = {Li, Jingyi Jessica and Li, Jingyi Jessica and Jiang, Ci-Ren and Jiang, Ci-Ren and Brown, James B and Brown, James B and Huang, Haiyan and Huang, Haiyan and Bickel, Peter J},
title = {{Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
month = dec
}
@article{Martinez:2009jp,
author = {Martinez, D and Challacombe, J and Morgenstern, I and Hibbett, D and Schmoll, M and Kubicek, C P and Ferreira, P and Ruiz-Duenas, F J and Martinez, A T and Kersten, P and Hammel, K E and Vanden Wymelenberg, A and Gaskell, J and Lindquist, E and Sabat, G and Splinter BonDurant, S and Larrondo, L F and Canessa, P and Vicuna, R and Yadav, J and Doddapaneni, H and Subramanian, V and Pisabarro, A G and Lavin, J L and Oguiza, J A and Master, E and Henrissat, B and Coutinho, P M and Harris, P and Magnuson, J K and Baker, S E and Bruno, K and Kenealy, W and Hoegger, P J and Kues, U and Ramaiya, P and Lucas, S and Salamov, A and Shapiro, H and Tu, H and Chee, C L and Misra, M and Xie, G and Teter, S and Yaver, D and James, T and Mokrejs, M and Pospisek, M and Grigoriev, I V and Brettin, T and Rokhsar, D and Berka, R and Cullen, D},
title = {{Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {6},
pages = {1954--1959},
month = feb
}
@article{Crew:1996vd,
author = {Crew, MD and Bates, LM},
title = {{DNA sequence of the \textit{Peromyscus} leucopus MHC class II gene A alpha (MhcPeleA alpha)}},
journal = {Immunogenetics},
year = {1996},
volume = {43},
number = {5},
pages = {323--324}
}
@article{Kellermann:2009iq,
author = {Kellermann, Vanessa and Kellermann, Vanessa and van Heerwaarden, Belinda and van Heerwaarden, Belinda and Sgr{\`o}, Carla M and Sgr{\`o}, Carla M and Hoffmann, Ary A and Hoffmann, Ary A},
title = {{Fundamental Evolutionary Limits in Ecological Traits Drive \textit{Drosophila} Species Distributions}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5945},
pages = {1244--1246}
}
@article{Isvaran:2007ia,
author = {Isvaran, K and Clutton-Brock, T},
title = {{Ecological correlates of extra-group paternity in mammals}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1607},
pages = {219--224},
month = jan
}
@article{Hughes:2003hf,
author = {Hughes, T P},
title = {{Climate Change, Human Impacts, and the Resilience of Coral Reefs}},
journal = {Science (New York, NY)},
year = {2003},
volume = {301},
number = {5635},
pages = {929--933},
month = aug
}
@article{THORNHILL:1983uw,
author = {THORNHILL, R and THORNHILL, R},
title = {{CRYPTIC FEMALE CHOICE AND ITS IMPLICATIONS IN THE SCORPIONFLY HARPOBITTACUS-NIGRICEPS}},
journal = {The American Naturalist},
year = {1983},
volume = {122},
number = {6},
pages = {765--788}
}
@article{Rumbaugh:2009dd,
author = {Rumbaugh, Kendra P and Diggle, Stephen P and Watters, Chase M and Ross-Gillespie, Adin and Griffin, Ashleigh S and West, Stuart A},
title = {{Quorum Sensing and the Social Evolution of Bacterial Virulence}},
journal = {Current Biology},
year = {2009},
volume = {19},
number = {4},
pages = {341--345},
month = feb
}
@article{HalaschekWiener:2009ee,
author = {Halaschek-Wiener, Julius and Amirabbasi-Beik, Mahsa and Monfared, Nasim and Pieczyk, Markus and Sailer, Christian and Kollar, Anita and Thomas, Ruth and Agalaridis, Georgios and Yamada, So and Oliveira, Lisa and Collins, Jennifer A and Meneilly, Graydon and Marra, Marco A and Madden, Kenneth M and Le, Nhu D and Connors, Joseph M and Brooks-Wilson, Angela R},
title = {{Genetic Variation in Healthy Oldest-Old}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6641},
month = aug
}
@article{Antia:1996uo,
author = {Antia, R and Koella, JC and Perrot, V},
title = {{Models of the within-host dynamics of persistent mycobacterial infections}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1996},
volume = {263},
number = {1368},
pages = {257--263}
}
@article{Findlay:2008gu,
author = {Findlay, Geoffrey D and Yi, Xianhua and MacCoss, Michael J and Swanson, Willie J},
title = {{Proteomics reveals novel \textit{Drosophila} seminal fluid proteins transferred at mating}},
journal = {PLOS Biology},
year = {2008},
volume = {6},
number = {7},
pages = {1417--1426}
}
@article{Allaine:2000uk,
author = {Allaine, D},
title = {{Sociality, mating system and reproductive skew in marmots: evidence and hypotheses}},
journal = {Behavioural Processes},
year = {2000},
volume = {51},
number = {1-3},
pages = {21--34}
}
@article{Goodson:2005ku,
author = {Goodson, JL and Saldanha, CJ and Saldanha, CJ and Hahn, TP and Hahn, TP and Soma, KK and Soma, KK},
title = {{Recent advances in behavioral neuroendocrinology: Insights from studies on birds}},
journal = {Hormones and Behavior},
year = {2005},
volume = {48},
number = {4},
pages = {461--473}
}
@article{Kozak:2009bk,
author = {Kozak, Kenneth H and Mendyk, Robert W and Wiens, John J},
title = {{CAN PARALLEL DIVERSIFICATION OCCUR IN SYMPATRY? REPEATED PATTERNS OF BODY-SIZE EVOLUTION IN COEXISTING CLADES OF NORTH AMERICAN SALAMANDERS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {7},
pages = {1769--1784},
month = jul
}
@article{Anonymous:6e3RcV1R,
title = {{mismatch-analysis}},
year = {2008},
pages = {1--7},
month = nov
}
@article{Kelly:2009dn,
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {1},
month = jan
}
@article{Long:2012kw,
author = {Long, Yong and Long, Yong and Li, Linchun and Li, Linchun and Li, Qing and Li, Qing and He, Xiaozhen and He, Xiaozhen and Cui, Zongbin and Cui, Zongbin},
title = {{Transcriptomic characterization of temperature stress responses in larval zebrafish.}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e37209}
}
@article{Schmidt:2010cya,
author = {Schmidt, D and Wilson, M D and Ballester, B and Schwalie, P C and Brown, G D and Marshall, A and Kutter, C and Watt, S and Martinez-Jimenez, C P and Mackay, S and Talianidis, I and Flicek, P and Odom, D T},
title = {{Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5981},
pages = {1036--1040},
month = may
}
@article{Gerlach:2011cg,
author = {Gerlach, N M and Gerlach, N M and McGlothlin, J W and McGlothlin, J W and Parker, P G and Parker, P G and Ketterson, E D and Ketterson, E D},
title = {{Promiscuous mating produces offspring with higher lifetime fitness}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
month = aug
}
@article{Kocyan:2007el,
author = {Kocyan, A},
title = {{The Discovery of Polyandry in Curculigo (Hypoxidaceae): Implications for androecium Evolution of Asparagoid Monocotyledons}},
journal = {Annals of Botany},
year = {2007},
volume = {100},
number = {2},
pages = {241--248},
month = jun
}
@article{Ford:2009kr,
author = {Ford, M J and Williamson, K S},
title = {{The Aunt and Uncle Effect Revisited--The Effect of Biased Parentage Assignment on Fitness Estimation in a Supplemented Salmon Population}},
journal = {Journal of Heredity},
year = {2009},
volume = {101},
number = {1},
pages = {33--41},
month = dec
}
@article{Ioannidis:2009cr,
author = {Ioannidis, John P A and Allison, David B and Ball, Catherine A and Coulibaly, Issa and Cui, Xiangqin and Culhane, Aed{\'\i}n C and Falchi, Mario and Furlanello, Cesare and Game, Laurence and Jurman, Giuseppe and Mangion, Jon and Mehta, Tapan and Nitzberg, Michael and Page, Grier P and Petretto, Enrico and van Noort, Vera},
title = {{Repeatability of published microarray gene expression analyses}},
journal = {Nature Genetics},
year = {2008},
volume = {41},
number = {2},
pages = {149--155},
month = jan
}
@article{MacManes:2014io,
author = {MacManes, M D},
title = {{On the optimal trimming of high-throughput mRNA sequence data}},
journal = {Frontiers in Genetics},
year = {2014},
volume = {5}
}
@article{AMANN:1992wa,
author = {AMANN, RI and STROMLEY, J and DEVEREUX, R and KEY, R and STAHL, DA},
title = {{Molecular and Microscopic Identification of Sulfate-Reducing Bacteria in Multispecies Biofilms}},
journal = {Applied and Environmental Microbiology},
year = {1992},
volume = {58},
number = {2},
pages = {614--623}
}
@article{Cerchio:2005eg,
author = {Cerchio, Salvatore and Jacobsen, Jeff K and Cholewiak, Danielle M and Falcone, Erin A and Merriwether, D andrew},
title = {{Paternity in humpback whales, \textit{Megaptera novaeangliae}: assessing polygyny and skew in male reproductive success}},
journal = {Animal Behaviour},
year = {2005},
volume = {70},
number = {2},
pages = {267--277},
month = aug
}
@article{BesterMeredith:2003vj,
author = {Bester-Meredith, Janet K and Marler, CA},
title = {{The association between male offspring aggression and paternal and maternal behavior of \emph{\textit{Peromyscus}} mice}},
journal = {Ethology},
year = {2003},
volume = {109},
number = {10},
pages = {797--808}
}
@article{DeWoody:2005ux,
author = {DeWoody, JA},
title = {{Molecular approaches to the study of parentage, relatedness, and fitness: Practical applications for wild animals}},
journal = {Journal of Wildlife Management},
year = {2005},
volume = {69},
number = {4},
pages = {1400--1418}
}
@article{Le:2010gk,
author = {Le, H S and Oltvai, Z N and Bar-Joseph, Z},
title = {{Cross-species queries of large gene expression databases}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {19},
pages = {2416--2423},
month = sep
}
@article{Sousa:2012jj,
author = {Sousa, Bridget F and Sousa, Bridget F and Westneat, David F},
title = {{Positive association between social and extra-pair mating in a polygynous songbird, the dickcissel (\textit{Spiza americana})}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
volume = {67},
pages = {243--255},
month = nov
}
@article{Refsnider:2009tq,
author = {Refsnider, J},
title = {{High Frequency of Multiple Paternity in Blanding's Turtle (Emys blandingii)}},
journal = {Journal of Herpetology},
year = {2009}
}
@article{Arnqvist:2007tt,
author = {Arnqvist, G and KIRKPATRICK, M},
title = {{The evolution of infidelity in socially monogamous passerines revisited: a reply to Griffith}},
journal = {The American Naturalist},
year = {2007},
volume = {169},
number = {2},
pages = {282--283}
}
@article{Anonymous:0IXo6E_r,
title = {{Deep Canyon Directions}},
year = {2006},
pages = {3},
month = jun,
annote = {deep canyon gate codes}
}
@article{Anonymous:1999wo,
title = {{Regulation of hemolymph osmolality in feral and domestic honeybees, Apis mellifera L. (Hymenoptera: Apidae)}},
year = {1999},
pages = {1--6},
month = nov
}
@article{Olsson:2009hb,
author = {Olsson, Mats and Schwartz, Tonia and Uller, Tobias and Healey, Mo},
title = {{Effects of sperm storage and male colour on probability of paternity in a polychromatic lizard}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {419--424},
month = feb
}
@article{Trapnell:2010kd,
author = {Trapnell, Cole and Williams, Brian A and Pertea, Geo and Mortazavi, Ali and Kwan, Gordon and van Baren, Marijke J and Salzberg, Steven L and Wold, Barbara J and Pachter, Lior},
title = {{Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation}},
journal = {Nature Biotechnology},
year = {2010},
volume = {28},
number = {5},
pages = {511--515},
month = may
}
@article{Moore:2009vq,
author = {Moore, Jennifer A and Daugherty, Charles H and Godfrey, Stephanie S and Nelson, Nicola J},
title = {{Seasonal monogamy and multiple paternity in a wild population of a territorial reptile (tuatara)}},
journal = {Biological Journal of The Linnean Society},
year = {2009},
volume = {98},
number = {1},
pages = {161--170}
}
@article{Assefa:2009fa,
author = {Assefa, S and Keane, T M and Otto, T D and Newbold, C and Berriman, M},
title = {{ABACAS: algorithm-based automatic contiguation of assembled sequences}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {15},
pages = {1968--1969},
month = jul
}
@article{Pelletier:2011iw,
author = {Pelletier, Fanie and Pelletier, Fanie and Moyes, Kelly and Moyes, Kelly and Clutton-Brock, TH and Coulson, Tim},
title = {{Decomposing variation in population growth into contributions from environment and phenotypes in an age-structured population.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
month = jun
}
@article{Widdig:2007jm,
author = {Widdig, Anja},
title = {{Paternal kin discrimination: the evidence and likely mechanisms}},
journal = {Biological Reviews},
year = {2007},
volume = {82},
number = {2},
pages = {319--334},
month = may
}
@article{Hurst:1995te,
author = {Hurst, Gregory DD and Sharpe, Rosie G and Sharpe, Rosie G and Broomfield, Angela H and Broomfield, Angela H and Walker, Linda E and Walker, Linda E and Majerus, Tamsin MO and Majerus, Tamsin MO and Zakharov, Ilia A and Zakharov, Ilia A and Majerus, Michael EN and Majerus, Michael EN},
title = {{Sexually transmitted disease in a promiscuous insect, \emph{Adalia bipunctata}}},
journal = {Ecological Entomology},
year = {1995},
volume = {20},
number = {3},
pages = {230--236}
}
@article{Hornett:2012enb,
author = {Hornett, Emily A and Wheat, Christopher W},
title = {{Quantitative RNA-Seq analysis in non-model species: assessing transcriptome assemblies as a scaffold and the utility of evolutionary divergent genomic reference species.}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {361}
}
@article{Soulsbury:2010fe,
author = {Soulsbury, Carl D},
title = {{Genetic Patterns of Paternity and Testes Size in Mammals}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9581},
month = mar
}
@article{Greely:2008jv,
author = {Greely, Henry and Sahakian, Barbara and Harris, John and Kessler, Ronald C and Gazzaniga, Michael and Campbell, Philip and Farah, Martha J},
title = {{Towards responsible use of cognitive-enhancing drugs by the healthy}},
journal = {Nature},
year = {2008},
volume = {456},
number = {7223},
pages = {702--705},
month = dec
}
@article{Danley:2007ex,
author = {Danley, Patrick D and Mullen, Sean P and Liu, Fenglong and Nene, Vishvanath and Quackenbush, John and Shaw, Kerry L},
title = {{A cricket Gene Index: a genomic resource for studying neurobiology, speciation, and molecular evolution}},
journal = {BMC Genomics},
year = {2007},
volume = {8},
number = {1},
pages = {109}
}
@article{Gilbert:2007go,
author = {Gilbert, M T P and Tomsho, L P and Rendulic, S and Packard, M and Drautz, D I and Sher, A and Tikhonov, A and Dalen, L and Kuznetsova, T and Kosintsev, P and Campos, P F and Higham, T and Collins, M J and Wilson, A S and Shidlovskiy, F and Buigues, B and Ericson, P G P and Germonpre, M and Gotherstrom, A and Iacumin, P and Nikolaev, V and Nowak-Kemp, M and Willerslev, E and Knight, J R and Irzyk, G P and Perbost, C S and Fredrikson, K M and Harkins, T T and Sheridan, S and Miller, W and Schuster, S C},
title = {{Whole-Genome Shotgun Sequencing of Mitochondria from Ancient Hair Shafts}},
journal = {Science (New York, NY)},
year = {2007},
volume = {317},
number = {5846},
pages = {1927--1930},
month = sep
}
@article{Schloss:2008hd,
author = {Schloss, Patrick D},
title = {{Evaluating different approaches that test whether microbial communities have the same structure}},
journal = {Isme Journal},
year = {2008},
volume = {2},
number = {3},
pages = {265--275}
}
@article{Excoffier:2013hs,
author = {Excoffier, Laurent and Dupanloup, Isabelle and Huerta-S{\~A} nchez, Emilia and Sousa, Vitor C and Foll, Matthieu},
title = {{Robust Demographic Inference from Genomic and SNP Data}},
journal = {PLOS Genetics},
year = {2013},
volume = {9},
number = {10},
pages = {e1003905},
month = oct
}
@article{Whitford:1997uj,
author = {Whitford, WG and Whitford, WG},
title = {{Desertification and animal biodiversity in the desert grasslands of North America}},
journal = {Journal of Arid Environments},
year = {1997},
volume = {37},
number = {4},
pages = {709--720}
}
@article{Cronn:2008ji,
author = {Cronn, R and Liston, A and Parks, M and Gernandt, D S and Shen, R and Mockler, T},
title = {{Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology}},
journal = {Nucleic Acids Research},
year = {2008},
volume = {36},
number = {19},
pages = {e122--e122},
month = sep
}
@article{Terashima:1998wf,
author = {Terashima, Y and Terashima, Y and Kondo, K and Kondo, K and Inagaki, A and Inagaki, A and Yokoi, H and Yokoi, H and Arima, H and Arima, H and Murase, T and Murase, T and Iwasaki, Y and Iwasaki, Y and Oiso, Y and Oiso, Y},
title = {{Age-associated decrease in response of rat aquaporin-2 gene expression to dehydration}},
journal = {Life Sciences},
year = {1998},
volume = {62},
number = {10},
pages = {873--882}
}
@article{Drickamer:2000vz,
author = {Drickamer, LC and Gowaty, PA and Holmes, CM},
title = {{Free female mate choice in house mice affects reproductive success and offspring viability and performance}},
journal = {Animal Behaviour},
year = {2000},
volume = {59},
pages = {371--378}
}
@article{Lindgren:2009ff,
author = {Lindgren, Cecilia M and Heid, Iris M and Randall, Joshua C and Lamina, Claudia and Steinthorsdottir, Valgerdur and Qi, Lu and Speliotes, Elizabeth K and Thorleifsson, Gudmar and Willer, Cristen J and Herrera, Blanca M and Jackson, Anne U and Lim, Noha and Scheet, Paul and Soranzo, Nicole and Amin, Najaf and Aulchenko, Yurii S and Chambers, John C and Drong, Alexander and Luan, Jian'an and Lyon, Helen N and Rivadeneira, Fernando and Sanna, Serena and Timpson, Nicholas J and Zillikens, M Carola and Zhao, Jing Hua and Almgren, Peter and Bandinelli, Stefania and Bennett, Amanda J and Bergman, Richard N and Bonnycastle, Lori L and Bumpstead, Suzannah J and Chanock, Stephen J and Cherkas, Lynn and Chines, Peter and Coin, Lachlan and Cooper, Cyrus and Crawford, Gabriel and Doering, Angela and Dominiczak, Anna and Doney, Alex S F and Ebrahim, Shah and Elliott, Paul and Erdos, Michael R and Estrada, Karol and Ferrucci, Luigi and Fischer, Guido and Forouhi, Nita G and Gieger, Christian and Grallert, Harald and Groves, Christopher J and Grundy, Scott and Guiducci, Candace and Hadley, David and Hamsten, anders and Havulinna, Aki S and Hofman, Albert and Holle, Rolf and Holloway, John W and Illig, Thomas and Isomaa, Bo and Jacobs, Leonie C and Jameson, Karen and Jousilahti, Pekka and Karpe, Fredrik and Kuusisto, Johanna and Laitinen, Jaana and Lathrop, G Mark and Lawlor, Debbie A and Mangino, Massimo and McArdle, Wendy L and Meitinger, Thomas and Morken, Mario A and Morris, andrew P and Munroe, Patricia and Narisu, Narisu and Nordstr{\"o}m, Anna and Nordstr{\"o}m, Peter and Oostra, Ben A and Palmer, Colin N A and Payne, Felicity and Peden, John F and Prokopenko, Inga and Renstr{\"o}m, Frida and Ruokonen, Aimo and Salomaa, Veikko and Sandhu, Manjinder S and Scott, Laura J and Scuteri, Angelo and Silander, Kaisa and Song, Kijoung and Yuan, Xin and Stringham, Heather M and Swift, Amy J and Tuomi, Tiinamaija and Uda, Manuela and Vollenweider, Peter and Waeber, Gerard and Wallace, Chris and Walters, G Bragi and Weedon, Michael N and {The Wellcome Trust Case Control Consortium} and Witteman, Jacqueline C M and Zhang, Cuilin and Zhang, Weihua and Caulfield, Mark J and Collins, Francis S and Davey Smith, George and Day, Ian N M and Franks, Paul W and Hattersley, andrew T and Hu, Frank B and Jarvelin, Marjo-Riitta and Kong, Augustine and Kooner, Jaspal S and Laakso, Markku and Lakatta, Edward and Mooser, Vincent and Morris, andrew D and Peltonen, Leena and Samani, Nilesh J and Spector, Timothy D and Strachan, David P and Tanaka, Toshiko and Tuomilehto, Jaakko and Uitterlinden, andr{\'e} G and van Duijn, Cornelia M and Wareham, Nicholas J and Watkins for the PROCARDIS consortia, Hugh and Waterworth, Dawn M and Boehnke, Michael and Deloukas, Panos and Groop, Leif and Hunter, David J and Thorsteinsdottir, Unnur and Schlessinger, David and Wichmann, H Erich and Frayling, Timothy M and Abecasis, Gon{\c c}alo R and Hirschhorn, Joel N and Loos, Ruth J F and Stefansson, Kari and Mohlke, Karen L and Barroso, In{\^e}s and McCarthy for the GIANT consortium, Mark I},
title = {{Genome-Wide Association Scan Meta-Analysis Identifies Three Loci Influencing Adiposity and Fat Distribution}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {6},
pages = {e1000508},
month = jun
}
@article{Damiens:2005ef,
author = {Damiens, D},
title = {{Why do sperm-depleted parasitoid males continue to mate?}},
journal = {Behavioral Ecology},
year = {2005},
volume = {17},
number = {1},
pages = {138--143},
month = oct
}
@article{Crim:2002ts,
author = {Crim, JL and Spotila, LD and Spotila, JR and O'Connor, M and Reina, R and Williams, CJ and Paladino, FV},
title = {{The leatherback turtle, Dermochelys coriacea, exhibits both polyandry and polygyny}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {10},
pages = {2097--2106}
}
@article{Arenz:1999vh,
author = {Arenz, CL and Leger, DW},
title = {{Thirteen-lined ground squirrel (Sciuridae : Spermophilus tridecemlineatus) antipredator vigilance decreases as vigilance cost increases}},
journal = {Animal Behaviour},
year = {1999},
volume = {57},
pages = {97--103}
}
@article{Sivalinghem:2010jx,
author = {Sivalinghem, S and Kasumovic, M M and Mason, A C and andrade, M C B and Elias, D O},
title = {{Vibratory communication in the jumping spider Phidippus clarus: polyandry, male courtship signals, and mating success}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {6},
pages = {1308--1314},
month = nov
}
@article{Stern:2007kw,
author = {Stern, A and Doron-Faigenboim, A and Erez, E and Martz, E and Bacharach, E and Pupko, T},
title = {{Selecton 2007: advanced models for detecting positive and purifying selection using a Bayesian inference approach}},
journal = {Nucleic Acids Research},
year = {2007},
volume = {35},
number = {Web Server},
pages = {W506--W511},
month = may
}
@article{Finlay:1997uk,
author = {Finlay, BB and Cossart, P},
title = {{Exploitation of mammalian host cell functions by bacterial pathogens}},
journal = {Science (New York, NY)},
year = {1997},
volume = {276},
number = {5313},
pages = {718--725}
}
@article{Dugdale:2007bs,
journal = {Molecular Ecology},
year = {2008},
volume = {0},
number = {0},
month = mar
}
@article{Ribble:1996tk,
author = {Ribble, David O and Millar, JS},
title = {{The mating system of northern populations of \emph{\textit{Peromyscus} \textit{maniculatus}} as revealed by radiotelemetry and DNA fingerprinting}},
journal = {Ecoscience},
year = {1996},
volume = {3},
number = {4},
pages = {423--428}
}
@article{Cohas:2006im,
author = {Cohas, A and Yoccoz, N G and Silva, A and Goossens, B and Allaine, D},
title = {{Extra-pair paternity in the monogamous alpine marmot (Marmota marmota): the roles of social setting and female mate choice}},
journal = {Behavioral Ecology and Sociobiology},
year = {2005},
volume = {59},
number = {5},
pages = {597--605},
month = dec
}
@article{Jennions:2000tu,
author = {Jennions, MD and Petrie, M},
title = {{Why do females mate multiply? A review of the genetic benefits}},
journal = {Biological Reviews},
year = {2000},
volume = {75},
number = {1},
pages = {21--64}
}
@article{Loschiavo:2007ir,
author = {Loschiavo, Maria and Nguyen, Quang K and Duselis, Amanda R and Vrana, Paul B},
title = {{Mapping and identification of candidate loci responsible for \textit{Peromyscus} hybrid overgrowth}},
journal = {Mammalian Genome},
year = {2007},
volume = {18},
number = {1},
pages = {75--85},
month = jan
}
@article{Hugenholtz:2008io,
author = {Hugenholtz, Philip and Tyson, Gene W},
title = {{Microbiology: Metagenomics}},
journal = {Nature},
year = {2008},
volume = {455},
number = {7212},
pages = {481--483},
month = sep
}
@incollection{Kempenaers:2007et,
author = {Kempenaers, Bart},
title = {{Mate Choice and Genetic Quality: A Review of the Heterozygosity Theory}},
year = {2007},
pages = {189--278},
publisher = {Elsevier}
}
@article{Evans:2003ui,
author = {Evans, J and Zane, L and Francescato, S and Pilastro, A},
title = {{Directional postcopulatory sexual selection revealed by artificial insemination}},
journal = {Nature az index},
year = {2003}
}
@article{Currier:2012dq,
author = {Currier, Rachel B and Calvete, Juan J and Sanz, Libia and Harrison, Robert A and Rowley, Paul D and Wagstaff, Simon C},
title = {{Unusual Stability of Messenger RNA in Snake Venom Reveals Gene Expression Dynamics of Venom Replenishment}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e41888},
month = aug
}
@article{Pekkala:2009hp,
author = {Pekkala, Nina and Puurtinen, Mikael and Kotiaho, Janne S},
title = {{Sexual selection for genetic quality: disentangling the roles of male and female behaviour}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {6},
pages = {1357--1363},
month = dec
}
@article{Mona:2008bo,
author = {Mona, S and Crestanello, B and Bankhead-Dronnet, S and Pecchioli, E and Ingrosso, S and D'Amelio, S and Rossi, L and Meneguz, P G and Bertorelle, G},
title = {{Disentangling the effects of recombination, selection, and demography on the genetic variation at a major histocompatibility complex class II gene in the alpine chamois}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {18},
pages = {4053--4067},
month = sep
}
@article{Mitra:2010ei,
author = {Mitra, Suparna and Gilbert, Jack A and Field, Dawn and Huson, Daniel H},
title = {{Comparison of multiple metagenomes using phylogenetic networks based on ecological indices}},
journal = {The ISME Journal},
year = {2010},
volume = {4},
number = {10},
pages = {1236--1242}
}
@article{Ellegren:1991vn,
author = {Ellegren, H},
title = {{DNA TYPING OF MUSEUM BIRDS}},
journal = {Nature},
year = {1991},
volume = {354},
number = {6349},
pages = {113--113}
}
@article{Yamazaki:1976tu,
author = {Yamazaki, K and Boyse, E A and Mik{\'e}, V and Thaler, H T and Mathieson, B J and Abbott, J and Boyse, J and Zayas, Z A and Thomas, L},
title = {{Control of mating preferences in mice by genes in the major histocompatibility complex.}},
journal = {The Journal of experimental medicine},
year = {1976},
volume = {144},
number = {5},
pages = {1324--1335},
month = nov
}
@article{Robinson:2010dd,
author = {Robinson, Mark D and Oshlack, Alicia},
title = {{A scaling normalization method for differential expression analysis of RNA-seq data}},
journal = {Genome Biology},
year = {2010},
volume = {11},
number = {3},
pages = {R25}
}
@article{Kai:2002wm,
author = {Kai, Y and Nakayama, K and Nakabo, T},
title = {{Genetic differences among three colour morphotypes of the black rockfish, Sebastes inermis, inferred from mtDNA and AFLP analyses}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {12},
pages = {2591--2598}
}
@article{Kimbrell:2001ua,
author = {Kimbrell, DA and Beutler, B},
title = {{The evolution and genetics of innate immunity}},
journal = {Nature Reviews Genetics},
year = {2001},
volume = {2},
number = {4},
pages = {256--267}
}
@article{Hahn:2002ti,
author = {Hahn, MW and Rausher, MD and Cunningham, CW},
title = {{Distinguishing between selection and population expansion in an experimental lineage of bacteriophage T7}},
journal = {Genetics},
year = {2002},
volume = {161},
number = {1},
pages = {11--20}
}
@article{Pitcher:2008es,
author = {Pitcher, Trevor E and Mays Jr., Herman L},
title = {{An introduction to genetic quality in the context of sexual selection}},
journal = {Genetica},
year = {2008},
volume = {134},
number = {1},
pages = {1--4},
month = jun
}
@article{Ryan:2011kj,
author = {Ryan, M J and Ryan, M J},
title = {{Replication in Field Biology: The Case of the Frog-Eating Bat}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6060},
pages = {1229--1230},
month = dec
}
@article{Ribble:1992vw,
author = {Ribble, David O},
title = {{Dispersal in a monogamous rodent, \emph{\textit{Peromyscus} \textit{californicus}}}},
journal = {Ecology},
year = {1992},
volume = {73},
number = {3},
pages = {859--866}
}
@article{VegaArreguin:2009jj,
author = {Vega-Arregu{\'\i}n, Julio C and Ibarra-Laclette, Enrique and Jim{\'e}nez-Moraila, Beatriz and Mart{\'\i}nez, Octavio and Vielle-Calzada, Jean and Herrera-Estrella, Luis and Herrera-Estrella, Alfredo},
title = {{Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {299}
}
@article{Gregson:2002tg,
author = {Gregson, S and Nyamukapa, CA and Nyamukapa, CA and Garnett, GP and Mason, PR and Mason, PR and Zhuwau, T and Zhuwau, T and Carael, M and Carael, M and Chandiwana, SK and Chandiwana, SK and anderson, RM and anderson, RM},
title = {{Sexual mixing patterns and sex-differentials in teenage exposure to HIV infection in rural Zimbabwe}},
journal = {Lancet},
year = {2002},
volume = {359},
number = {9321},
pages = {1896--1903}
}
@article{Louis:2009gt,
author = {Louis, Edward J},
title = {{Evolutionary genetics: Origins of reproductive isolation}},
journal = {Nature},
year = {2009},
volume = {457},
number = {7229},
pages = {549--550},
month = jan
}
@article{Seo:2005jh,
author = {Seo, T K},
title = {{Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data}},
journal = {PNAS},
year = {2005},
volume = {102},
number = {12},
pages = {4436--4441},
month = mar
}
@article{Kaspari:2008ur,
author = {Kaspari, M and Stevenson, B},
title = {{Evolutionary ecology, antibiosis, and all that rot}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008}
}
@article{Takei:2012gx,
author = {Takei, Yoshio and Bartolo, Ray C and Fujihara, Hiroaki and Ueta, Yoichi and Donald, John A},
title = {{Water deprivation induces appetite and alters metabolic strategy in \textit{Notomys alexis}: unique mechanisms for water production in the desert.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1738},
pages = {2599--2608},
month = jul
}
@article{Wenseleers:2006wc,
author = {Wenseleers, Tom and Ratnieks, Francis L W},
title = {{Comparative analysis of worker reproduction and policing in eusocial hymenoptera supports relatedness theory}},
journal = {The American Naturalist},
year = {2006},
volume = {168},
number = {6},
pages = {E163--E179}
}
@article{Huk:2006bq,
author = {Huk, T and Winkel, W},
title = {{Polygyny and its fitness consequences for primary and secondary female pied flycatchers}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1594},
pages = {1681--1688},
month = jul
}
@article{Simmons:2005dy,
author = {Simmons, Leigh W},
title = {{THE EVOLUTION OF POLYANDRY: Sperm Competition, Sperm Selection, and offspring Viability}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2005},
volume = {36},
number = {1},
pages = {125--146},
month = dec
}
@article{Namroud:2008jj,
author = {Namroud, Marie-Claire and Beaulieu, Jean and Juge, Nicolas and Laroche, J{\'e}r{\^o}me and Bousquet, Jean},
title = {{Scanning the genome for gene single nucleotide polymorphisms involved in adaptive population differentiation in white spruce}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {16},
pages = {3599--3613},
month = aug
}
@article{Walters:2008gw,
author = {Walters, James R and Harrison, Richard G},
title = {{EST analysis of male accessory glands from Heliconius butterflies with divergent mating systems}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {592}
}
@incollection{Parker:1983uu,
author = {Parker, GA},
title = {{Mate quality and mating decisions}},
booktitle = {Mate Choice},
year = {1983},
publisher = {Cambridge University Press},
address = {Cambridge},
month = jun
}
@article{Yeoman:2011jn,
author = {Yeoman, Carl J and Yeoman, Carl J and Chia, Nicholas and Chia, Nicholas and Yildirim, Suleyman and Yildirim, Suleyman and Miller, Margret E Berg and Miller, Margret E Berg and Kent, Angela and Kent, Angela and Stumpf, Rebecca and Stumpf, Rebecca and Leigh, Steven R and Leigh, Steven R and Nelson, Karen E and White, Bryan A and White, Bryan A and Wilson, Brenda A and Wilson, Brenda A},
title = {{Towards an Evolutionary Model of Animal-Associated Microbiomes}},
journal = {Entropy},
year = {2011},
volume = {13},
number = {3},
pages = {570--594},
month = mar
}
@article{Heise:1983wf,
author = {Heise, E R and Keever, C and McMahan, M R},
title = {{A Critical Analysis of Paternity Determination Using Hla and 5 Erythrocyte Antigen Systems}},
journal = {American Journal of Forensic Medicine and Pathology},
year = {1983},
volume = {4},
pages = {15--23},
month = mar
}
@article{Nutt:2007ba,
author = {Nutt, Karen J},
title = {{Genetic reconstruction of breeding patterns in gundis (Rodentia: Ctenodactylidae)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {61},
number = {11},
pages = {1651--1663},
month = may
}
@article{MAHER:2000tm,
author = {MAHER, CR},
title = {{Quantitative variation in ecological and hormonal variables correlates with spatial organization of pronghorn (Antilocapra americana) males}},
journal = {Behavioral Ecology and Sociobiology},
year = {2000},
volume = {47},
number = {5},
pages = {327--338}
}
@article{Anonymous:2011el,
author = {van der Horst, Gerhard and Maree, Liana and Kotz{\'e}, Sanet H and O'Riain, M Justin},
title = {{Sperm structure and motility in the eusocial naked mole-rat, Heterocephalus glaber: a case of degenerative orthogenesis in the absence of sperm competition?}},
journal = {BMC Evolutionary Biology},
year = {2011},
volume = {11},
number = {1},
pages = {351}
}
@article{Bolger:2014ek,
author = {Bolger, Anthony M and Lohse, Marc and Usadel, Bjoern},
title = {{Trimmomatic: a flexible trimmer for Illumina sequence data.}},
journal = {Bioinformatics (Oxford, England)},
year = {2014},
volume = {30},
number = {15},
pages = {2114--2120},
month = aug
}
@article{Fuller:1996wo,
author = {Fuller, CA and Blaustein, AR},
title = {{Effects of the parasite \emph{Eimeria arizonensis} on survival of deer mice (\emph{\textit{Peromyscus} \textit{maniculatus}})}},
journal = {Ecology},
year = {1996},
volume = {77},
number = {7},
pages = {2196--2202}
}
@article{Zahavi:2005hr,
author = {Zahavi, A},
title = {{Evolutionary theory: Is group selection necessary to explain social adaptations in microorganisms?}},
journal = {Heredity},
year = {2004},
volume = {94},
number = {2},
pages = {143--144},
month = nov
}
@article{Anonymous:Ckv-xmNh,
title = {{J Infect Dis 2001 Vallor}},
year = {2001},
pages = {6},
month = nov
}
@article{Cope:2004bs,
author = {Cope, Jason M},
title = {{Population genetics and phylogeography of the blue rockfish ( Sebastes mystinus) from Washington to California}},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
year = {2004},
volume = {61},
number = {3},
pages = {332--342},
month = mar
}
@article{Leonard:2008jz,
author = {Leonard, Jason E and Boake, Christine R B},
title = {{Associations between male courtship and female polyandry in three species of wasp, Nasonia (Hymenoptera: Pteromalidae)}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {3},
pages = {637--647},
month = sep
}
@article{MartinCoello:2009es,
author = {Martin-Coello, J and Dopazo, H and Arbiza, L and Ausio, J and Roldan, E R S and GOMENDIO, M},
title = {{Sexual selection drives weak positive selection in protamine genes and high promoter divergence, enhancing sperm competitiveness}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1666},
pages = {2427--2436},
month = may
}
@article{Fu:2001uy,
author = {Fu, P and Neff, BD and Gross, MR},
title = {{Tactic-specific success in sperm competition}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2001},
volume = {268},
number = {1472},
pages = {1105--1112}
}
@article{Jaquiery:2009bh,
author = {Jaqui{\'e}ry, Julie and Broquet, Thomas and Aguilar, C{\'e}cile and Evanno, Guillaume and Perrin, Nicolas},
title = {{GOOD GENES DRIVE FEMALE CHOICE FOR MATING PARTNERS IN THE LEK-BREEDING EUROPEAN TREEFROG}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {1},
pages = {108--115},
month = jan
}
@article{Tatum:2009kp,
author = {Tatum, R and Zhang, Y and Salleng, K and Lu, Z and Lin, J J and Lu, Q and Jeansonne, B G and Ding, L and Chen, Y H},
title = {{Renal salt wasting and chronic dehydration in claudin-7-deficient mice}},
journal = {AJP: Renal Physiology},
year = {2009},
volume = {298},
number = {1},
pages = {F24--F34},
month = dec
}
@article{ArayaAjoy:2009fd,
author = {Araya-Ajoy, Yi-Men and Chaves-Campos, Johel and Kalko, Elisabeth K V and Dewoody, J andrew},
title = {{High-Pitched Notes during Vocal Contests Signal Genetic Diversity in Ocellated Antbirds}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {12},
pages = {e8137},
month = dec
}
@article{Perezmiles:2007fw,
author = {P{\'e}rez-Miles, Fernando and Postiglioni, Rodrigo and Montes-de-Oca, Laura and Baruffaldi, Luciana and Costa, Fernando G},
title = {{Mating system in the tarantula spider Eupalaestrus weijenberghi (Thorell, 1894): Evidences of monandry and polygyny}},
journal = {Zoology},
year = {2007},
volume = {110},
number = {4},
pages = {253--260},
month = sep
}
@article{Gingras:2008dc,
author = {Gingras, Yves and Larivi{\`e}re, Vincent and Macaluso, Beno{\^\i}t and Robitaille, Jean-Pierre},
title = {{The Effects of Aging on Researchers' Publication and Citation Patterns}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {12},
pages = {e4048},
month = dec
}
@article{Tay:2009ji,
author = {Tay, S K and Blythe, J and Lipovich, L},
title = {{Global discovery of primate-specific genes in the human genome}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {29},
pages = {12019--12024},
month = jul
}
@article{Camacho:2009fc,
author = {Camacho, Christiam and Coulouris, George and Avagyan, Vahram and Ma, Ning and Papadopoulos, Jason and Bealer, Kevin and Madden, Thomas L},
title = {{BLAST+: architecture and applications}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {421}
}
@article{Hendry:2008it,
author = {Hendry, andrew P and Huber, Sarah K and de Le{\'o}n, Luis F and Herrel, Anthony and Podos, Jeffrey},
title = {{Disruptive selection in a bimodal population of Darwin's finches.}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2009},
volume = {276},
number = {1657},
pages = {753--759},
month = feb
}
@article{YAMPOLSKY:2012el,
author = {YAMPOLSKY, LEV Y and YAMPOLSKY, LEV Y and GLAZKO, GALINA V and GLAZKO, GALINA V and Fry, James D},
title = {{Evolution of gene expression and expression plasticity in long-term experimental populations of \textit{Drosophila} \textit{melanogaster} maintained under constant and variable ethanol stress}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = jul
}
@article{Kimmel:1998ul,
author = {Kimmel, M and CHAKRABORTY, R and King, JP and Bamshad, M and Watkins, WS and Jorde, LB},
title = {{Signatures of population expansion in microsatellite repeat data}},
journal = {Genetics},
year = {1998},
volume = {148},
number = {4},
pages = {1921--1930}
}
@article{Kryukov:2005dy,
author = {Kryukov, G V},
title = {{Small fitness effect of mutations in highly conserved non-coding regions}},
journal = {Human Molecular Genetics},
year = {2005},
volume = {14},
number = {15},
pages = {2221--2229},
month = jun
}
@article{Hughes:2013dp,
author = {Hughes, Graham M and Gang, Li and Murphy, William J and Higgins, Desmond G and Teeling, Emma C},
title = {{Using Illumina next generation sequencing technologies to sequence multigene families in \textit{de novo}species}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = mar
}
@article{Hagan:2010hs,
author = {Hagan, C L and Hagan, C L and Kim, S and Kim, S and Kahne, D and Kahne, D},
title = {{Reconstitution of Outer Membrane Protein Assembly from Purified Components}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5980},
pages = {890--892},
month = may
}
@article{Babik:2009fn,
author = {Babik, W},
title = {{Methods for MHC genotyping in non-model vertebrates}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {2},
pages = {237--251},
month = mar
}
@article{Hartmann:2008dk,
author = {Hartmann, Henrik and Messier, Christian},
title = {{The role of forest tent caterpillar defoliations and partial harvest in the decline and death of sugar maple.}},
journal = {Annals of Botany},
year = {2008},
volume = {102},
number = {3},
pages = {377--387},
month = jul
}
@article{Hoogland:2009dp,
author = {Hoogland, John L},
title = {{Nursing of own and foster offspring by Utah prairie dogs (Cynomys parvidens)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {11},
pages = {1621--1634},
month = apr
}
@article{Kelt:2007ua,
author = {Kelt, Douglas A and van Vuren, Dirk H and Hafner, Mark S and Danielson, Brent J and Kelly, Marcella J},
title = {{Threat of hantavirus pulmonary syndrome to field biologists working with small mammals}},
journal = {Emerging Infectious Diseases},
year = {2007},
volume = {13},
number = {9},
pages = {1285--1287}
}
@article{Sharon:2010fs,
author = {Sharon, G and Segal, D and Ringo, J M and Hefetz, A and Zilber-Rosenberg, I and Rosenberg, E},
title = {{From the Cover: Commensal bacteria play a role in mating preference of \textit{Drosophila} \textit{melanogaster}}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {46},
pages = {20051--20056},
month = nov
}
@article{Santure:2013fz,
author = {Santure, Anna W and Santure, Anna W and DE CAUWER, ISABELLE and DE CAUWER, ISABELLE and Robinson, Matthew R and Robinson, Matthew R and Poissant, Jocelyn and Poissant, Jocelyn and Sheldon, Ben C and Slate, Jon},
title = {{Genomic dissection of variation in clutch size and egg mass in a wild great tit ( Parus major) population}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {15},
pages = {3949--3962},
month = jul
}
@article{Cooper:2007hm,
author = {Cooper, W E and Wilson, D S},
title = {{Sex and social costs of escaping in the striped plateau lizard Sceloporus virgatus}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {4},
pages = {764--768},
month = jul
}
@article{DeSantis:2006kj,
author = {DeSantis, T Z and Hugenholtz, P and Keller, K and Brodie, E L and Larsen, N and Piceno, Y M and Phan, R and andersen, G L},
title = {{NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes}},
journal = {Nucleic Acids Research},
year = {2006},
volume = {34},
number = {Web Server},
pages = {W394--W399},
month = jul
}
@article{Cresswell:2003ez,
author = {Cresswell, W and Lind, J and Kaby, U and Quinn, J L and Jakobsson, S},
title = {{Does an opportunistic predator preferentially attack nonvigilant prey?}},
journal = {Animal Behaviour},
year = {2003},
volume = {66},
number = {4},
pages = {643--648},
month = oct
}
@article{Civetta:2000wn,
author = {Civetta, A and Clark, AG},
title = {{Correlated effects of sperm competition and postmating female mortality}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {24},
pages = {13162--13165}
}
@article{Wachtmeister:2001ut,
author = {Wachtmeister, CA},
title = {{Display in monogamous pairs: a review of empirical data and evolutionary explanations}},
journal = {Animal Behaviour},
year = {2001},
volume = {61},
pages = {861--868}
}
@techreport{Pirinen:2014bx,
author = {Pirinen, M and Lappalainen, T and Zaitlen, N A and Consortium, G and Dermitzakis, E T and Donnelly, P and McCarthy, M I and Rivas, M A},
title = {{Assessing allele specific expression across multiple tissues from RNA-seq read data}},
year = {2014},
month = jul
}
@article{Lin:2007ht,
author = {Lin, Michael F and Lin, Michael F and Carlson, Joseph W and Carlson, Joseph W and Crosby, Madeline A and Matthews, Beverley B and Matthews, Beverley B and Yu, Charles and Yu, Charles and Park, Soo and Park, Soo and Wan, Kenneth H and Wan, Kenneth H and Schroeder, andrew J and Gramates, L Sian and Gramates, L Sian and St Pierre, Susan E and Roark, Margaret and Roark, Margaret and Wiley, Kenneth L and Wiley, Kenneth L and Kulathinal, Rob J and Kulathinal, Rob J and Zhang, Peili and Zhang, Peili and Myrick, Kyl V and Myrick, Kyl V and Antone, Jerry V and Antone, Jerry V and Celniker, Susan E and Gelbart, William M and Kellis, Manolis and Kellis, Manolis},
title = {{Revisiting the protein-coding gene catalog of \textit{Drosophila} \textit{melanogaster} using 12 fly genomes.}},
journal = {Genome Research},
year = {2007},
volume = {17},
number = {12},
pages = {1823--1836},
month = dec
}
@article{Anonymous:U4LVpwfW,
title = {{scatterplot3d}},
year = {2011},
pages = {1--7},
month = mar
}
@article{Gaub:2010gf,
author = {Gaub, S. and Gaub, S. and Groszer, M. and Groszer, M. and Fisher, S. E. and Fisher, S. E. and Ehret, G. and Ehret, G.},
title = {{The structure of innate vocalizations in Foxp2-deficient mouse pups}},
journal = {Genes, Brain and Behavior},
year = {2010},
volume = {9},
number = {4},
pages = {390--401}
}
@article{Stallmann:2006ud,
author = {Stallmann, RR and HARCOURT, AH},
title = {{Size matters: the (negative) allometry of copulatory duration in mammals}},
journal = {Biological Journal of The Linnean Society},
year = {2006},
volume = {87},
number = {2},
pages = {185--193}
}
@article{Pemberton:1992wz,
author = {Pemberton, JM and ALBON, SD and GUINNESS, FE and Clutton-Brock, TH and DOVER, GA},
title = {{BEHAVIORAL ESTIMATES OF MALE MATING SUCCESS TESTED BY DNA FINGERPRINTING IN A POLYGYNOUS MAMMAL}},
journal = {Behavioral Ecology},
year = {1992},
volume = {3},
number = {1},
pages = {66--75}
}
@article{Nipitwattanaphon:2013ky,
author = {Nipitwattanaphon, Mingkwan and Wang, John and Dijkstra, Michiel B and Keller, Laurent},
title = {{A simple genetic basis for complex social behaviour mediates widespread gene expression differences}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {14},
pages = {3797--3813},
month = jun
}
@article{Fox:2011wh,
author = {Fox, John and Weisberg, Sanford},
title = {{car}},
year = {2011},
pages = {1--147},
month = apr
}
@article{Crespi:2007ke,
author = {Crespi, B and Summers, K and Dorus, S},
title = {{Adaptive evolution of genes underlying schizophrenia}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1627},
pages = {2801--2810},
month = nov
}
@article{Urdinguio:2009uk,
author = {Urdinguio, Rocio G and Sanchez-Mut, Jose V and Esteller, Manel},
title = {{Epigenetic mechanisms in neurological diseases: genes, syndromes, and therapies}},
journal = {Lancet Neurology},
year = {2009},
volume = {8},
number = {11},
pages = {1056--1072}
}
@article{Fink:2006ke,
author = {Fink, S},
title = {{Mammalian monogamy is not controlled by a single gene}},
journal = {Proceedings of the National Academy of Sciences},
year = {2006},
volume = {103},
number = {29},
pages = {10956--10960},
month = jul
}
@article{Boyce:2004vx,
author = {Boyce, JD and Boyce, JD and Cullen, PA and Cullen, PA and Adler, B and Adler, B},
title = {{Genomic-scale analysis of bacterial gene and protein expression in the host}},
journal = {Emerging Infectious Diseases},
year = {2004},
volume = {10},
number = {8},
pages = {1357--1362}
}
@article{Prufer:2012ea,
author = {Pr{\"u}fer, Kay and Munch, Kasper and Hellmann, Ines and Akagi, Keiko and Miller, Jason R and Walenz, Brian and Koren, Sergey and Sutton, Granger and Kodira, Chinnappa and Winer, Roger and Knight, James R and Mullikin, James C and Meader, Stephen J and Ponting, Chris P and Lunter, Gerton and Higashino, Saneyuki and Hobolth, Asger and Dutheil, Julien and Karakoc, Emre and Alkan, Can and Sajjadian, Saba and Catacchio, Claudia Rita and Ventura, Mario and Marqu{\`e}s-Bonet, Tom{\`a}s and Eichler, Evan E and andr{\'e}, Claudine and Atencia, Rebeca and Mugisha, Lawrence and Junhold, J{\"o}rg and Patterson, Nick and Siebauer, Michael and Good, Jeffrey M and Fischer, Anne and Ptak, Susan E and Lachmann, Michael and Symer, David E and Mailund, Thomas and Schierup, Mikkel H and andr{\'e}s, Aida M and Kelso, Janet and P{\"a}{\"a}bo, Svante},
title = {{The bonobo genome compared with the chimpanzee and human genomes.}},
journal = {Nature},
year = {2012},
volume = {486},
number = {7404},
pages = {527--531},
month = jun
}
@article{Merkt:1994vz,
author = {Merkt, J R and Merkt, J R and Taylor, C R and Taylor, C R},
title = {{"Metabolic switch" for desert survival.}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {25},
pages = {12313--12316},
month = dec
}
@article{Anonymous:SNKNXLHP,
title = {{Allograft Rejection Predicts the Occurrence of Late-Onset Cytomegalovirus (CMV) Disease among CMV-Mismatched Solid Organ Transplant Patients Receiving Prophylaxis with Oral Ganciclovir}},
year = {2001},
pages = {1--4},
month = nov
}
@article{Marshall:1998vy,
author = {Marshall, TC and Slate, J and Kruuk, LEB and Pemberton, JM},
title = {{Statistical confidence for likelihood-based paternity inference in natural populations}},
journal = {Molecular Ecology},
year = {1998},
volume = {7},
number = {5},
pages = {639--655}
}
@article{White:2006dl,
author = {White, Tim D and Woldegabriel, Giday and Asfaw, Berhane and Ambrose, Stan and Beyene, Yonas and Bernor, Raymond L and Boisserie, Jean-Renaud and Currie, Brian and Gilbert, Henry and Haile-Selassie, Yohannes and Hart, William K and Hlusko, Leslea J and Howell, F Clark and Kono, Reiko T and Lehmann, Thomas and Louchart, Antoine and Lovejoy, C Owen and Renne, Paul R and Saegusa, Haruo and Vrba, Elisabeth S and Wesselman, Hank and Suwa, Gen},
title = {{Asa Issie, Aramis and the origin of Australopithecus}},
journal = {Nature},
year = {2006},
volume = {440},
number = {7086},
pages = {883--889},
month = apr
}
@article{WINSLOW:1993vr,
author = {Winslow, J T and Hastings, N and Hastings, N and Carter, CS and {Hasbaugh} and {Hasbaugh} and Insel, TR},
title = {{A Role for Central Vasopressin in Pair Bonding in Monogamous Prairie Voles}},
journal = {Nature},
year = {1993},
volume = {365},
number = {6446},
pages = {545--548}
}
@article{Smith:2008bj,
author = {Smith, F G and Jones, B C and Debruine, L M and Little, A C},
title = {{Interactions between masculinity-femininity and apparent health in face preferences}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {2},
pages = {441--445},
month = mar
}
@article{Anonymous:iavECMaY,
title = {{MacManes 2005 Income Tax}},
year = {2006},
pages = {17},
month = aug
}
@article{Oli:2008vq,
author = {Oli, MK and Armitage, KB},
title = {{Indirect Fitness Benefits do not Compensate for the Loss of Direct Fitness in Yellow-bellied Marmots}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {4},
pages = {874--881}
}
@article{Firsov:2004uv,
author = {Firsov, Dmitri and Firsov, Dmitri},
title = {{Revisiting sodium and water reabsorption with functional genomics tools}},
journal = {Current opinion in nephrology and hypertension},
year = {2004},
volume = {13},
number = {1},
pages = {59--65}
}
@article{Excoffier:2006kt,
author = {Excoffier, Laurent and Heckel, Gerald},
title = {{Computer programs for population genetics data analysis: a survival guide.}},
journal = {Nature Reviews Genetics},
year = {2006},
volume = {7},
number = {10},
pages = {745--758},
month = oct
}
@article{Leathers:1993tf,
author = {Leathers, Timothy D and Gupta, Subash C},
title = {{Susceptibility of the Eastern Tent Caterpillar \emph{(\textit{Malacosoma}} \emph{\textit{americanum}) }to the Entomogenous Fungus \emph{Beauveria bassiana}
}},
journal = {Journal of Invertebrate Pathology},
year = {1993},
number = {61},
pages = {217--219}
}
@article{Gustafsson:2006tc,
author = {Gustafsson, L and Qvarnstrom, A},
title = {{A test of the "sexy son" hypothesis: Sons of polygynous collared flycatchers do not inherit their fathers' mating status}},
journal = {The American Naturalist},
year = {2006},
volume = {167},
number = {2},
pages = {297--302}
}
@article{Beutler:2008hc,
author = {Beutler, B},
title = {{Genetics of Innate Immunity}},
journal = {International Journal of Infectious Diseases},
year = {2008},
volume = {12},
pages = {e1},
month = dec
}
@article{Hurford:2009gn,
author = {Hurford, Amy and Rands, Sean},
title = {{GPS Measurement Error Gives Rise to Spurious 180{\textdegree} Turning Angles and Strong Directional Biases in Animal Movement Data}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {5},
pages = {e5632},
month = may
}
@article{Aviles:2010eg,
author = {Aviles, J M and Soler, J J},
title = {{Nestling coloration is adjusted to parent visual performance in altricial birds irrespective of assumptions on vision system for Laniidaeand owls, a reply to Renoult et~al.}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {1},
pages = {226--230},
month = jan
}
@article{LOEHLE:1997vm,
author = {Loehle, C},
title = {{The pathogen transmission avoidance theory of sexual selection}},
journal = {Ecological Modelling},
year = {1997},
volume = {103},
number = {2-3},
pages = {231--250}
}
@article{Mank:2009cc,
author = {Mank, Judith E and Ellegren, Hans},
title = {{SEX-LINKAGE OF SEXUALLY ANTAGONISTIC GENES IS PREDICTED BY FEMALE, BUT NOT MALE, EFFECTS IN BIRDS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {6},
pages = {1464--1472},
month = jun
}
@article{Kislinger:2006cm,
author = {Kislinger, Thomas and Cox, Brian and Kannan, Anitha and Chung, Clement and Hu, Pingzhao and Ignatchenko, Alexandr and Scott, Michelle S and Gramolini, Anthony O and Morris, Quaid and Hallett, Michael T and Rossant, Janet and Hughes, Timothy R and Frey, Brendan and Emili, andrew},
title = {{Global Survey of Organ and Organelle Protein Expression in Mouse: Combined Proteomic and Transcriptomic Profiling}},
journal = {Cell},
year = {2006},
volume = {125},
number = {1},
pages = {173--186},
month = apr
}
@article{Rowe:2011kla,
author = {Rowe, Kevin C and Singhal, Sonal and MacManes, Matthew D and Ayroles, Julien F and MORELLI, TONI LYN and Rubidge, Emily M and Bi, Ke and Moritz, Craig C},
title = {{Museum genomics: low-cost and high-accuracy genetic data from historical specimens.}},
journal = {Molecular Ecology Resources},
year = {2011},
volume = {11},
number = {6},
pages = {1082--1092},
month = nov
}
@article{Shibata:2003gl,
author = {Shibata, Shigeru and Miyakawa, Hiroshi and Shimizu, Seiichiro and Uchida, Shunya},
title = {{Fever and anuria}},
journal = {The Lancet},
year = {2003},
volume = {362},
number = {9398},
pages = {1806},
month = nov
}
@article{Holman:2011fz,
author = {Holman, Luke and Holman, Luke and ST{\"U}RUP, MARLENE and ST{\"U}RUP, MARLENE and TRONTTI, KALEVI and TRONTTI, KALEVI and Boomsma, Jacobus J},
title = {{Random sperm use and genetic effects on worker caste fate in Atta colombica leaf-cutting ants}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {23},
pages = {5092--5102},
month = nov
}
@article{Sobotnik:2012jd,
author = {Sobotnik, J and Sobotnik, J and Bourguignon, T and Bourguignon, T and Hanus, R and Hanus, R and Demianova, Z and Demianova, Z and Pytelkova, J and Pytelkova, J and Mares, M and Mares, M and Foltynova, P and Foltynova, P and Preisler, J and Preisler, J and Cvacka, J and Cvacka, J and Krasulova, J and Krasulova, J and Roisin, Y and Roisin, Y},
title = {{Explosive Backpacks in Old Termite Workers}},
journal = {Science (New York, NY)},
year = {2012},
volume = {337},
number = {6093},
pages = {436--436},
month = jul
}
@article{Qi:2010ku,
author = {Qi, J and Zhao, F and Buboltz, A and Schuster, S C},
title = {{inGAP: an integrated next-generation genome analysis pipeline}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {26},
number = {1},
pages = {127--129},
month = dec
}
@article{Price:2009gu,
author = {Price, Alkes L and Helgason, Agnar and Palsson, Snaebjorn and Stefansson, Hreinn and St Clair, David and andreassen, Ole A and Reich, David and Kong, Augustine and Stefansson, Kari and Mcvean, Gil},
title = {{The Impact of Divergence Time on the Nature of Population Structure: An Example from Iceland}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {6},
pages = {e1000505},
month = jun
}
@article{Bradbury:1977wb,
author = {Bradbury, J W and Vehrencamp, S L},
title = {{Social organization and foraging in Emballonurid bats III. Mating systems}},
journal = {Behavioral Ecology and Sociobiology},
year = {1977},
volume = {2},
number = {1},
pages = {1--17}
}
@article{Anonymous:3Zv8itd0,
title = {{2006-11}},
year = {2006},
pages = {20},
month = may
}
@article{Teytelman:2008gt,
author = {Teytelman, Leonid and Eisen, Michael B and Rine, Jasper},
title = {{Silent but Not Static: Accelerated Base-Pair Substitution in Silenced Chromatin of Budding Yeasts}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {11},
pages = {e1000247},
month = nov
}
@article{Rosengrave:2008bm,
author = {Rosengrave, P and Gemmell, N J and Metcalf, V and McBride, K and Montgomerie, R},
title = {{A mechanism for cryptic female choice in chinook salmon}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {6},
pages = {1179--1185},
month = nov
}
@article{Oomen:2012fna,
author = {Oomen, Rebekah A and Oomen, Rebekah A and Gillett, Roxanne M and Gillett, Roxanne M and Kyle, Christopher J and Kyle, Christopher J},
title = {{Comparison of 454 pyrosequencing methods for characterizing the major histocompatibility complex of nonmodel species and the advantages of ultra deep coverage}},
journal = {Molecular Ecology Resources},
year = {2012},
pages = {n/a--n/a},
month = oct
}
@article{Nettle:2002je,
author = {Nettle, D},
title = {{Women's height, reproductive success and the evolution of sexual dimorphism in modern humans}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2002},
volume = {269},
number = {1503},
pages = {1919--1923},
month = sep
}
@article{Mares:1977um,
author = {Mares, MA},
title = {{Water Economy and Salt Balance in a South-American Desert Rodent, Eligmodontia-Typus}},
journal = {Comparative Biochemistry and Physiology A-Molecular {\&} Integrative Physiology},
year = {1977},
volume = {56},
number = {3},
pages = {325--332}
}
@article{MULLEN:1971va,
author = {Mullen, LM},
title = {{Energy Metabolism and Body Water Turnover Rates of 2 Species of Free-Living Kangaroo Rats, \emph{\textit{Dipodomys} \textit{merriami}} and \emph{\textit{Dipodomys} microps}}},
journal = {Comparative Biochemistry and Physiology},
year = {1971},
volume = {39},
number = {3A},
pages = {379--390}
}
@article{Schino:2009bs,
author = {Schino, Gabriele and Aureli, Filippo},
title = {{The relative roles of kinship and reciprocity in explaining primate altruism}},
journal = {Ecology Letters},
year = {2010},
volume = {13},
number = {1},
pages = {45--50},
month = jan
}
@article{Best:1990wz,
author = {Best, TL and Best, TL and Titus, AS and Titus, AS and Caesar, K and Caesar, K and Lewis, CL and Lewis, CL},
title = {{Ammospermophilus harrisii}},
journal = {Mammalian Species},
year = {1990},
pages = {1--7}
}
@article{Mitra:2009dj,
author = {Mitra, S and Klar, B and Huson, D H},
title = {{Visual and statistical comparison of metagenomes}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {15},
pages = {1849--1855},
month = jul
}
@article{Snyder:2009js,
author = {Snyder, Robert L and Frederick-Hudson, Katy H and Schul, Johannes},
title = {{Molecular Phylogenetics of the Genus Neoconocephalus (Orthoptera, Tettigoniidae) and the Evolution of Temperate Life Histories}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e7203},
month = sep
}
@article{Dugdale:2007bi,
author = {Dugdale, Hannah L and Macdonald, David W and Pope, Lisa C and Burke, Terry},
title = {{Polygynandry, extra-group paternity and multiple-paternity litters in European badger ( Meles meles) social groups}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {24},
pages = {5294--5306},
month = dec
}
@article{Li:2010jz,
author = {Li, R and Zhu, H and Ruan, J and Qian, W and Fang, X and Shi, Z and Li, Y and Li, S and Shan, G and Kristiansen, K and Yang, H and Wang, J},
title = {{\textit{De novo} assembly of human genomes with massively parallel short read sequencing}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {2},
pages = {265--272},
month = feb
}
@article{DeWoody:2000ty,
author = {DeWoody, JA and Fletcher, DE and Fletcher, DE and Wilkins, SD and Wilkins, SD and Nelson, WS and Nelson, WS and Avise, JC and Avise, JC},
title = {{Genetic monogamy and biparental care in an externally fertilizing fish, the largemouth bass (Micropterus salmoides)}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1460},
pages = {2431--2437}
}
@article{Xie:2012bl,
author = {Xie, W and Meng, Q and Wu, Q and Wang, S and Yang, X and Yang, N},
title = {{Pyrosequencing the Bemisia tabaci Transcriptome Reveals a Highly Diverse Bacterial Community and a Robust System for Insecticide Resistance}},
journal = {PLOS ONE},
year = {2012}
}
@article{Lamont:2011ky,
author = {Lamont, RF and Lamont, RF and Sobel, JD and Sobel, JD and Akins, RA and Akins, RA and Hassan, SS and Hassan, SS and Chaiworapongsa, T and Chaiworapongsa, T and Kusanovic, JP and Kusanovic, JP and Romero, R and Romero, R},
title = {{The vaginal microbiome: new information about genital tract flora using molecular based techniques}},
journal = {BJOG: An International Journal of Obstetrics {\&} Gynaecology},
year = {2011},
volume = {118},
number = {5},
pages = {533--549},
month = jan
}
@article{Adler:2008fg,
author = {Adler, F R and Clay, C A and Lehmer, E M},
title = {{The Role of Heterogeneity in the Persistence and Prevalence of Sin Nombre Virus in Deer Mice}},
journal = {The American Naturalist},
year = {2008},
volume = {172},
number = {6},
pages = {855--867},
month = dec
}
@article{Henn:2011hs,
author = {Henn, B M and Gignoux, C R and Jobin, M and Granka, J M and Macpherson, J M and Kidd, J M and Rodriguez-Botigue, L and Ramachandran, S and Hon, L and Brisbin, A and Lin, A A and Underhill, P A and Comas, D and Kidd, K K and Norman, P J and Parham, P and Bustamante, C D and Mountain, J L and Feldman, M W},
title = {{From the Cover: Feature Article: Hunter-gatherer genomic diversity suggests a southern African origin for modern humans}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {13},
pages = {5154--5162},
month = mar
}
@article{Straub:2011jh,
author = {Straub, Shannon CK and Straub, Shannon CK and Fishbein, Mark and Fishbein, Mark and Livshultz, Tatyana and Livshultz, Tatyana and Foster, Zachary and Foster, Zachary and Parks, Matthew and Parks, Matthew and Weitemier, Kevin and Weitemier, Kevin and Cronn, Richard C and Cronn, Richard C and Liston, Aaron and Liston, Aaron},
title = {{Building a model: Developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {211},
month = may
}
@article{Hahn:2009bc,
author = {Hahn, Daniel A and Ragland, Gregory J and Shoemaker, D Dewayne and Denlinger, David L},
title = {{Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {234}
}
@article{Du:2012io,
author = {Du, Ye and Du, Ye and Jiang, Hui and Jiang, Hui and Chen, Ying and Chen, Ying and Li, Cong and Li, Cong and Zhao, Meiru and Zhao, Meiru and Wu, Jinghua and Wu, Jinghua and Qiu, Yong and Qiu, Yong and Li, Qibin and Li, Qibin and Zhang, Xiuqing and Zhang, Xiuqing},
title = {{Comprehensive Evaluation of SNP Identification with the Restriction Enzyme-based Reduced Representation Library (RRL) Method}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {77}
}
@article{Tewhey:2009gu,
author = {Tewhey, Ryan and Nakano, Masakazu and Wang, Xiaoyun and Pab{\'o}n-Pe{\~n}a, Carlos and Novak, Barbara and Giuffre, Angelica and Lin, Eric and Happe, Scott and Roberts, Doug N and LeProust, Emily M and Topol, Eric J and Harismendy, Olivier and Frazer, Kelly A},
title = {{Enrichment of sequencing targets from the human genome by solution hybridization}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {10},
pages = {R116}
}
@article{Sinervo:2007el,
author = {Sinervo, Barry and Heulin, Benoit and Surget Groba, Yann and Clobert, Jean and Miles, Donald B and Corl, Ammon and Chaine, Alexis and Davis, Alison},
title = {{Models of Density-Dependent Genic Selection and a New Rock-Paper-Scissors Social System}},
journal = {The American Naturalist},
year = {2007},
volume = {170},
number = {5},
pages = {663--680},
month = nov
}
@article{vanCleve:2010kr,
author = {van Cleve, Jeremy and Feldman, Marcus W and Lehmann, Laurent},
title = {{How Demography, Life History, and Kinship Shape the Evolution of Genomic Imprinting}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {4},
pages = {440--455},
month = oct
}
@article{Birkhead:1995vr,
author = {Birkhead, TR},
title = {{Sperm competition: Evolutionary causes and consequences}},
journal = {Reproduction Fertility and Development},
year = {1995},
volume = {7},
number = {4},
pages = {755--775}
}
@article{Anonymous:SwYpmzDI,
author = {Sedlazeck, Fritz J and Rescheneder, Philipp and von Haeseler, Arndt},
title = {{NextGenMap: fast and accurate read mapping in highly polymorphic genomes}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {21},
pages = {2790--2791},
month = nov
}
@article{Marsden:2009ho,
author = {Marsden, C D and Mable, B K and Woodroffe, R and Rasmussen, G S A and Cleaveland, S and McNutt, J W and Emmanuel, M and Thomas, R and Kennedy, L J},
title = {{Highly Endangered African Wild Dogs (Lycaon pictus) Lack Variation at the Major Histocompatibility Complex}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {Supplement 1},
pages = {S54--S65},
month = jun
}
@article{Anonymous:j4BNVFfD,
title = {{untitled}},
year = {2013},
pages = {1--4},
month = mar
}
@article{Arteaga:2005dx,
author = {Arteaga, Silvia and andrade-Cetto, Adolfo and C{\'a}rdenas, Ren{\'e}},
title = {{Larrea tridentata (Creosote bush), an abundant plant of Mexican and US-American deserts and its metabolite nordihydroguaiaretic acid}},
journal = {Journal of Ethnopharmacology},
year = {2005},
volume = {98},
number = {3},
pages = {231--239},
month = apr
}
@article{Moreira:2006io,
author = {Moreira, Pedro L and L{\'o}pez, Pilar and Mart{\'\i}n, Jos{\'e}},
title = {{Femoral secretions and copulatory plugs convey chemical information about male identity and dominance status in Iberian rock lizards (Lacerta monticola)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {60},
number = {2},
pages = {166--174},
month = feb
}
@article{Almeida:2012hv,
author = {Almeida, Diego D and Almeida, Diego D and Scortecci, Katia C and Scortecci, Katia C and Kobashi, Leonardo S and Kobashi, Leonardo S and Agnez-Lima, Lucymara F and Agnez-Lima, Lucymara F and Medeiros, Silvia R and Medeiros, Silvia R and Silva-Junior, Arn{\'o}bio A and Silva-Junior, Arn{\'o}bio A and Junqueira-de-Azevedo, In{\'a}cio de and Junqueira-de-Azevedo, In{\'a}cio de and Fernandes-Pedrosa, Matheus de and Fernandes-Pedrosa, Matheus de},
title = {{Profiling the resting venom gland of the scorpion Tityus stigmurus through a transcriptomic survey}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {362}
}
@article{Wu:2010kh,
author = {Wu, Dong-Dong and Jin, Wei and Hao, Xiao-Dan and Tang, Nelson Leung Sang and Zhang, Ya-Ping},
title = {{Evidence for Positive Selection on the Osteogenin (BMP3) Gene in Human Populations}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {6},
pages = {e10959},
month = jun
}
@article{He:2008hb,
author = {He, Fang and Wu, Dong-Dong and Kong, Qing-Peng and Zhang, Ya-Ping},
title = {{Intriguing Balancing Selection on the Intron 5 Region of LMBR1 in Human Population}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {8},
pages = {e2948},
month = aug
}
@article{Connallon:2010ky,
author = {Connallon, Tim},
title = {{Genic Capture, Sex Linkage, and the Heritability of Fitness}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {5},
pages = {564--576},
month = may
}
@article{Donders:2011dr,
author = {Donders, Gilbert G G and Donders, Gilbert G G and Berger, Judith and Berger, Judith and Heuninckx, H{\'e}l{\`e}ne and Heuninckx, H{\'e}l{\`e}ne and Bellen, Gert and Bellen, Gert and Cornelis, Ann and Cornelis, Ann},
title = {{Vaginal flora changes on Pap smears after insertion of levonorgestrel-releasing intrauterine device}},
journal = {Contraception},
year = {2011},
volume = {83},
number = {4},
pages = {352--356},
month = apr
}
@article{Christie:2011id,
author = {Christie, J S and Picornell, A and Moya, A and Ramon, M M and Castro, J A},
title = {{Mitochondrial DNA effects on fitness in \textit{Drosophila} subobscura}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {3},
pages = {239--245},
month = mar
}
@article{Baxter:2009wq,
author = {Baxter, B Dnate and Mendez-Harclerode, Francisca M and Fulhorst, Charles F and Bradley, Robert D},
title = {{A MOLECULAR EXAMINATION OF RELATEDNESS, MULTIPLE PATERNITY, AND COHABITATION OF THE SOUTHERN PLAINS WOODRAT (NEOTOMA MICROPUS)}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {4},
pages = {819--831}
}
@article{Vignieri:2007dy,
author = {Vignieri, Sacha N},
title = {{Cryptic behaviours, inverse genetic landscapes, and spatial avoidance of inbreeding in the Pacific jumping mouse}},
journal = {Molecular Ecology},
year = {2006},
volume = {16},
number = {4},
pages = {853--866},
month = dec
}
@article{CHAKRABORTY:1988va,
author = {CHAKRABORTY, R and MEAGHER, TR and MEAGHER, TR and Smouse, PE and Smouse, PE},
title = {{PARENTAGE ANALYSIS WITH GENETIC-MARKERS IN NATURAL-POPULATIONS .1. THE EXPECTED PROPORTION OF OFFSPRING WITH UNAMBIGUOUS PATERNITY}},
journal = {Genetics},
year = {1988},
volume = {118},
number = {3},
pages = {527--536}
}
@article{Carbone:2007dz,
author = {Carbone, Chris and Teacher, Amber and Rowcliffe, J Marcus},
title = {{The Costs of Carnivory}},
journal = {PLOS Biology},
year = {2007},
volume = {5},
number = {2},
pages = {e22}
}
@article{Wiebe:2005hh,
author = {Wiebe, Karen L},
title = {{Asymmetric costs favor female desertion in the facultatively polyandrous northern flicker (Colaptes auratus): a removal experiment}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {57},
number = {5},
pages = {429--437},
month = dec
}
@article{Moreau:2011iv,
author = {Moreau, Claudia and Moreau, Claudia and Bh{\'e}rer, Claude and Bh{\'e}rer, Claude and V{\'e}zina, H{\'e}l{\`e}ne and V{\'e}zina, H{\'e}l{\`e}ne and Jomphe, Mich{\`e}le and Jomphe, Mich{\`e}le and Labuda, Damian and Labuda, Damian and Excoffier, Laurent},
title = {{Deep human genealogies reveal a selective advantage to be on an expanding wave front.}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6059},
pages = {1148--1150},
month = nov
}
@article{Petersen:2011cn,
author = {Petersen, Thomas Nordahl and Petersen, Thomas Nordahl and Brunak, Soren and von Heijne, Gunnar and von Heijne, Gunnar and Nielsen, Henrik and Nielsen, Henrik},
title = {{SignalP 4.0: discriminating signal peptides from transmembrane regions}},
journal = {Nature Methods},
year = {2011},
volume = {8},
number = {10},
pages = {785--786},
month = oct
}
@article{Johnstone:2008cl,
author = {Johnstone, Rufus A},
title = {{KIN SELECTION, LOCAL COMPETITION, AND REPRODUCTIVE SKEW}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {10},
pages = {2592--2599},
month = oct
}
@article{Prosen:2004ef,
author = {Prosen, Ethan D and Jaeger, Robert G and Lee, Danielle R},
title = {{Sexual coercion in a territorial salamander: females punish socially polygynous male partners}},
journal = {Animal Behaviour},
year = {2004},
volume = {67},
number = {1},
pages = {85--92},
month = jan
}
@article{Bradley:2007ws,
author = {Bradley, Robert D and Durish, Nevin D and Rogers, Duke S and Miller, Jacqueline R and Engstrom, Mark D and Kilpatrick, C William},
title = {{Toward a molecular phylogeny for \emph{\textit{Peromyscus}}: Evidence from mitochondrial cytochrome-b sequences}},
journal = {Journal of Mammalogy},
year = {2007},
volume = {88},
number = {5},
pages = {1146--1159}
}
@article{Drewell:2012gv,
author = {Drewell, Robert A and Drewell, Robert A and Lo, Nathan and Lo, Nathan and Oxley, Peter R and Oxley, Peter R and Oldroyd, Benjamin P},
title = {{Kin conflict in insect societies: a new epigenetic perspective.}},
journal = {Trends In Ecology {\&} Evolution},
year = {2012},
volume = {27},
number = {7},
pages = {367--373},
month = jul
}
@article{Harwood:2009ix,
author = {Harwood, Thomas D},
title = {{The circular definition of populations and its implications for biological sampling}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {5},
pages = {765--768},
month = mar
}
@article{Haydock:2002jb,
author = {Haydock, J and Haydock, J and Koenig, WD},
title = {{Reproductive skew in the polygynandrous acorn woodpecker}},
journal = {The American Naturalist},
year = {2002},
volume = {99},
number = {10},
pages = {7178--7183}
}
@article{Firman:2009kn,
author = {Firman, R C and Simmons, L W},
title = {{Sperm competition and the evolution of the sperm hook in house mice}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {12},
pages = {2505--2511},
month = dec
}
@inproceedings{Waters:2008kf,
author = {Waters, Jonathan M},
title = {{Driven by the West Wind Drift? A synthesis of southern temperate marine biogeography, with new directions for dispersalism}},
booktitle = {Journal of Biogeography},
year = {2008},
pages = {417--427},
organization = {Univ Otago, Dept Zool, Dunedin, New Zealand}
}
@article{Green:2010ea,
author = {Green, T J and Barnes, A C},
title = {{Bacterial diversity of the digestive gland of Sydney rock oysters, Saccostrea glomeratainfected with the paramyxean parasite, Marteilia sydneyi}},
journal = {Journal of Applied Microbiology},
year = {2010},
month = feb
}
@article{Kishi:2008dm,
author = {Kishi, Shigeki and Nishida, Takayoshi},
title = {{Optimal investment in sons and daughters when parents do not know the sex of their offspring}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {4},
pages = {607--615},
month = sep
}
@article{Zuk:2012jt,
author = {Zuk, Or and Zuk, Or and Hechter, Eliana and Hechter, Eliana and Sunyaev, Shamil R and Lander, Eric S},
title = {{The mystery of missing heritability: Genetic interactions create phantom heritability.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = jan
}
@article{SCHWAGMEYER:1980vf,
author = {SCHWAGMEYER, PL},
title = {{ALARM CALLING BEHAVIOR OF THE 13-LINED GROUND-SQUIRREL, SPERMOPHILUS-TRIDECEMLINEATUS}},
journal = {Behavioral Ecology and Sociobiology},
year = {1980},
volume = {7},
number = {3},
pages = {195--200}
}
@article{Catchen:2013iz,
author = {Catchen, Julian and Catchen, Julian and Hohenlohe, Paul A and Bassham, Susan and Bassham, Susan and Amores, Angel and Amores, Angel and Cresko, William A},
title = {{Stacks: an analysis tool set for population genomics}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = may
}
@article{Delgado:2009dx,
author = {Delgado, Luz M and Vielma, Alex H and K{\"a}hne, Thilo and Palacios, Adri{\'a}n G and Schmachtenberg, Oliver},
title = {{The GABAergic system in the retina of neonate and adult Octodon degus, studied by immunohistochemistry and electroretinography}},
journal = {The Journal of Comparative Neurology},
year = {2009},
volume = {514},
number = {5},
pages = {459--472},
month = jun
}
@article{Kleiman:1977tv,
author = {Kleiman, Devra G},
title = {{Monogamy in mammals}},
journal = {Quarterly Review of Biology},
year = {1977},
volume = {52},
number = {1},
pages = {39--69}
}
@article{Smith:2011de,
author = {Smith, Stephen A and Wilson, Nerida G and Goetz, Freya E and Feehery, Caitlin and andrade, S{\'o}nia C S and Rouse, Greg W and Giribet, Gonzalo and Dunn, Casey W},
title = {{Resolving the evolutionary relationships of molluscs with phylogenomic tools}},
journal = {Nature},
year = {2011},
pages = {1--7},
month = oct
}
@article{Baker:2012hf,
author = {Baker, Christi and Antonovics, Janis},
title = {{Evolutionary Determinants of Genetic Variation in Susceptibility to Infectious Diseases in Humans}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e29089},
month = jan
}
@article{Bonasio:2010bx,
author = {Bonasio, R and Tu, S and Reinberg, D},
title = {{Molecular Signals of Epigenetic States}},
journal = {Science (New York, NY)},
year = {2010},
volume = {330},
number = {6004},
pages = {612--616},
month = oct
}
@article{Silva:2008vs,
author = {Silva, Roger B and Vieira, Emerson M and Izar, Patricia},
title = {{SOCIAL MONOGAMY AND BIPARENTAL CARE OF THE NEOTROPICAL SOUTHERN BAMBOO RAT (KANNABATEOMYS AMBLYONYX)}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {6},
pages = {1464--1472}
}
@techreport{IPCC:2007uz,
author = {{IPCC}},
title = {{Working Group I Report "The Physical Science Basis"}},
year = {2007},
address = {Cambridge}
}
@article{Novello:2002ty,
author = {Novello, A and Novello, A and Altuna, C and Altuna, C},
title = {{Cytogenetics and distribution of two new karyomorphs of the \emph{\textit{Ctenomys} \textit{pearsoni}} complex (Rodentia, Octodontidae) from southern Uruguay}},
journal = {Mammalian Biology},
year = {2002},
volume = {67},
number = {3},
pages = {188--192}
}
@article{Harris:2011iv,
author = {Harris, Breanna N and Harris, Breanna N and Perea-Rodriguez, Juan Pablo and Perea-Rodriguez, Juan Pablo and Saltzman, Wendy and Saltzman, Wendy},
title = {{Acute effects of corticosterone injection on paternal behavior in California mouse (\textit{Peromyscus} \textit{californicus}) fathers}},
journal = {Hormones and Behavior},
year = {2011},
volume = {60},
number = {5},
pages = {666--675},
month = nov
}
@article{Hodge:2008jd,
author = {Hodge, Sarah J and Manica, A and Flower, T P and Clutton-Brock, T H},
title = {{Determinants of reproductive success in dominant female meerkats}},
journal = {Journal of Animal Ecology},
year = {2008},
volume = {77},
number = {1},
pages = {92--102},
month = jan
}
@article{Queller:1996vs,
author = {Queller, DC},
title = {{The measurement and meaning of inclusive fitness}},
journal = {Animal Behaviour},
year = {1996},
volume = {51},
pages = {229--232}
}
@article{Rowell:2009fr,
author = {Rowell, Jonathan T and Servedio, Maria R},
title = {{Gentlemen Prefer Blondes: The Evolution of Mate Preference among Strategically Allocated Males}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {1},
pages = {12--25},
month = jan
}
@article{Kingsolver:2008wh,
author = {Kingsolver, Joel G and Huey, Raymond B},
title = {{Size, temperature, and fitness: three rules}},
journal = {Evolutionary Ecology Research},
year = {2008},
volume = {10},
number = {2},
pages = {251}
}
@article{deBeuf:2010bk,
author = {de Beuf, Annelies and D'Haese, Patrick C and Verhulst, Anja},
title = {{Epoetin Delta as an Antifibrotic Agent in the Remnant Kidney Rat: A Possible Role for Transforming Growth Factor Beta and Hepatocyte Growth Factor}},
journal = {Nephron Experimental Nephrology},
year = {2010},
volume = {115},
number = {3},
pages = {e46--e59}
}
@article{Jones:2010dv,
author = {Jones, Edward O and White, andrew and Boots, Michael},
title = {{THE EVOLUTIONARY IMPLICATIONS OF CONFLICT BETWEEN PARASITES WITH DIFFERENT TRANSMISSION MODES}},
journal = {Evolution},
year = {2010},
pages = {no--no},
month = mar
}
@article{Merila:2009ds,
author = {Meril{\"a}, J},
title = {{Genetic Constraints on Adaptation?}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5945},
pages = {1212--1213},
month = sep
}
@article{Price:2008ee,
author = {Price, T A R and Hodgson, D J and Lewis, Z and Hurst, G D D and Wedell, N},
title = {{Selfish Genetic Elements Promote Polyandry in a Fly}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5905},
pages = {1241--1243},
month = nov
}
@article{Rougemont:2008cg,
author = {Rougemont, Jacques and Amzallag, Arnaud and Iseli, Christian and Farinelli, Laurent and Xenarios, Ioannis and Naef, Felix},
title = {{Probabilistic base calling of Solexa sequencing data}},
journal = {BMC Bioinformatics},
year = {2008},
volume = {9},
number = {1},
pages = {431}
}
@article{Alberts:2007up,
author = {Alberts, S C and Altmann, J},
title = {{The importance of being dad: Paternal care in a polygynandrous mating system}},
journal = {American Journal of Physical Anthropology},
year = {2007},
pages = {61--61}
}
@article{Yang:2008hg,
author = {Yang, Z},
title = {{Empirical evaluation of a prior for Bayesian phylogenetic inference}},
journal = {Philosophical Transactions of The Royal Society B-Biological Sciences},
year = {2008},
volume = {363},
number = {1512},
pages = {4031--4039},
month = dec
}
@article{ZewailFoote:2009fz,
author = {Zewail-Foote, Maha and Diehl, Abby and Benson, Anastasia and Lee, Kuan H and Guarraci, Fay A},
title = {{Reproductive success and mate choice in Long{\textendash}Evans rats}},
journal = {Physiology {\&} Behavior},
year = {2009},
volume = {96},
number = {1},
pages = {98--103},
month = jan
}
@article{FETHERSTON:1990wo,
author = {FETHERSTON, IA and BURLEY, NT},
title = {{DO ZEBRA FINCHES PREFER TO MATE WITH CLOSE RELATIVES}},
journal = {Behavioral Ecology and Sociobiology},
year = {1990},
volume = {27},
number = {6},
pages = {411--414}
}
@article{Scott:2004wc,
author = {Scott, I M and Jensen, H and Nicol, R and Lesage, L and Bradbury, R and S{\'a}nchez-Vindas, P and Poveda, L and Arnason, J T and Philog{\`e}ne, B J R},
title = {{Efficacy of Piper (Piperaceae) extracts for control of common home and garden insect pests.}},
journal = {Journal of Economic Entomology},
year = {2004},
volume = {97},
number = {4},
pages = {1390--1403},
month = aug
}
@article{Pedersen:2006wi,
author = {Pedersen, Jes S and Krieger, Michael J B and Vogel, Valerie and Giraud, Tatiana and Keller, Laurent},
title = {{Native supercolonies of unrelated individuals in the invasive Argentine ant}},
journal = {Evolution},
year = {2006},
volume = {60},
number = {4},
pages = {782--791}
}
@article{Anonymous:2012bo,
author = {Laine, Veronika N and Herczeg, G{\'a}bor and Shikano, Takahito and Primmer, Craig R},
title = {{Heterozygosity-behaviour correlations in nine-spined stickleback ( Pungitius pungitius) populations: contrasting effects at random and functional loci}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {19},
pages = {4872--4884},
month = aug
}
@article{Lindsay:2011tc,
author = {Lindsay, W.R. and Webster, M.S. and Schwabl, H},
title = {{Sexually Selected Male Plumage Color Is Testosterone Dependent in a Tropical Passerine Bird, the Red-Backed Fairy-Wren (Malurus melanocephalus)}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {10},
pages = {e26067}
}
@article{Bankir:1985ts,
author = {Bankir, L and De Rouffignac, C},
title = {{Urinary concentrating ability: insights from comparative anatomy}},
journal = {{\ldots} },
year = {1985}
}
@article{Strandh:2012cj,
author = {Strandh, M and Strandh, M and Westerdahl, H and Westerdahl, H and Pontarp, M and Pontarp, M and Canback, B and Canback, B and Dubois, M P and Dubois, M P and Miquel, C and Miquel, C and Taberlet, P and Taberlet, P and Bonadonna, F and Bonadonna, F},
title = {{Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
month = sep
}
@article{Rosset:2005bn,
author = {Rosset, Herv and Keller, Laurent and Chapuisat, Michel},
title = {{Experimental manipulation of colony genetic diversity had no effect on short-term task efficiency in the Argentine ant Linepithema humile}},
journal = {Behavioral Ecology and Sociobiology},
year = {2005},
volume = {58},
number = {1},
pages = {87--98},
month = jan
}
@article{Peery:2008vm,
author = {Peery, M Zachariah and Beissinger, Steven R and House, Roger F and Berube, Martine and Hall, Laurie A and Sellas, Anna and Palsboll, Per J},
title = {{CHARACTERIZING SOURCE-SINK DYNAMICS WITH GENETIC PARENTAGE ASSIGNMENTS}},
journal = {Ecology},
year = {2008},
volume = {89},
number = {10},
pages = {2746--2759}
}
@article{Boyle:2003ee,
author = {Boyle, Erin C and Finlay, B Brett},
title = {{Bacterial pathogenesis: exploiting cellular adherence}},
journal = {Current Opinion in Cell Biology},
year = {2003},
volume = {15},
number = {5},
pages = {633--639},
month = oct
}
@article{Lohmueller:2014gd,
author = {Lohmueller, Kirk E},
title = {{The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits}},
journal = {PLOS Genetics},
year = {2014},
volume = {10},
number = {5},
pages = {e1004379},
month = may
}
@article{Yang:2011bm,
author = {Yang, Ziheng and dos Reis, Mario},
title = {{Statistical Properties of the Branch-Site Test of Positive Selection}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {3},
pages = {1217--1228}
}
@article{Mattos:2010jd,
author = {Mattos, K J and Orrock, J L},
title = {{Behavioral consequences of plant invasion: an invasive plant alters rodent antipredator behavior}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {3},
pages = {556--561},
month = apr
}
@article{Penn:2007fe,
author = {Penn, D J and Smith, K R},
title = {{Differential fitness costs of reproduction between the sexes}},
journal = {Proceedings of the National Academy of Sciences},
year = {2007},
volume = {104},
number = {2},
pages = {553--558},
month = jan
}
@article{Green:2011bt,
author = {Green, Kristina Karlsson and Green, Kristina Karlsson and Madjidian, Josefin A and Madjidian, Josefin A},
title = {{Active males, reactive females: stereotypic sex roles in sexual conflict research}},
journal = {Animal Behaviour},
year = {2011},
pages = {1--7},
month = mar
}
@article{Dean:2006cp,
author = {Dean, M D and Ardlie, K G and NACHMAN, M W},
title = {{The frequency of multiple paternity suggests that sperm competition is common in house mice (Mus domesticus)}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {13},
pages = {4141--4151},
month = aug
}
@article{Steiner:2007fi,
author = {Steiner, Cynthia C and Weber, Jesse N and Hoekstra, Hopi E},
title = {{Adaptive variation in beach mice produced by two interacting pigmentation genes.}},
journal = {PLOS Biology},
year = {2007},
volume = {5},
number = {9},
pages = {e219},
month = sep
}
@article{Kleven:2009hz,
author = {Kleven, Oddmund and Fossoy, Frode and Laskemoen, Terje and Robertson, Raleigh J and Rudolfsen, Geir and Lifjeld, Jan T},
title = {{COMPARATIVE EVIDENCE FOR THE EVOLUTION OF SPERM SWIMMING SPEED BY SPERM COMPETITION AND FEMALE SPERM STORAGE DURATION IN PASSERINE BIRDS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {9},
pages = {2466--2473},
month = sep
}
@article{Slate:2000ve,
author = {Slate, J and Marshall, T and Pemberton, J},
title = {{A retrospective assessment of the accuracy of the paternity inference program CERVUS}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {6},
pages = {801--808},
month = jun
}
@article{Smith:2011kj,
author = {Smith, C D and Zimin, A and Holt, C and Abouheif, E and Benton, R and Cash, E and Croset, V and Currie, C R and Elhaik, E and Elsik, C G and Fave, M J and Fernandes, V and Gadau, J and Gibson, J D and Graur, D and Grubbs, K J and Hagen, D E and Helmkampf, M and Holley, J A and Hu, H and Viniegra, A S I and Johnson, B R and Johnson, R M and Khila, A and Kim, J W and Laird, J and Mathis, K A and Moeller, J A and Munoz-Torres, M C and Murphy, M C and Nakamura, R and Nigam, S and Overson, R P and Placek, J E and Rajakumar, R and Reese, J T and Robertson, H M and Smith, C R and Suarez, A V and Suen, G and Suhr, E L and Tao, S and Torres, C W and van Wilgenburg, E and Viljakainen, L and Walden, K K O and Wild, A L and Yandell, M and Yorke, J A and Tsutsui, N D},
title = {{Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile)}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {14},
pages = {5673--5678},
month = apr
}
@article{Cutrera:2006wf,
author = {Cutrera, A P and Antinuchi, C D and Mora, M S and Vassallo, A I},
title = {{Home-range and activity patterns of the south American subterranean rodent \textit{Ctenomys} talarum}},
journal = {Journal of Mammalogy},
year = {2006},
volume = {87},
number = {6},
pages = {1183--1191}
}
@article{OBrein:1988wy,
author = {O'Brein, S and Evermann, J},
title = {{Interactive Influence of Infectious-Disease and Genetic Diversity in Natural-Populations}},
journal = {Trends In Ecology {\&} Evolution},
year = {1988},
volume = {3},
number = {10},
pages = {254--259}
}
@article{Adler:2010il,
author = {Adler, M},
title = {{Sexual conflict in waterfowl: why do females resist extrapair copulations?}},
journal = {Behavioral Ecology},
year = {2009},
volume = {21},
number = {1},
pages = {182--192},
month = dec
}
@article{Cox:2010ge,
author = {Cox, Michael J and Cox, Michael J and Huang, Yvonne J and Fujimura, Kei E and Fujimura, Kei E and Liu, Jane T and Liu, Jane T and McKean, Michelle and McKean, Michelle and Boushey, Homer A and Segal, Mark R and Segal, Mark R and Brodie, Eoin L and Cabana, Michael D and Cabana, Michael D and Lynch, Susan V},
title = {{Lactobacillus casei Abundance Is Associated with Profound Shifts in the Infant Gut Microbiome}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {1}
}
@article{Griffith:2009ig,
author = {Griffith, Simon C and Holleley, Clare E and Mariette, Mylene M and Pryke, Sarah R and Svedin, Nina},
title = {{Low level of extrapair parentage in wild zebra finches}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {2},
pages = {261--264},
month = feb
}
@article{Scheffer:2001ij,
author = {Scheffer, Marten and Carpenter, Steve and Foley, Jonathan A and Folke, Carl and Walker, Brian},
title = {{Catastrophic shifts in ecosystems}},
journal = {Nature},
year = {2001},
volume = {413},
number = {6856},
pages = {591--596},
month = oct
}
@article{Carmona:1983wj,
author = {Carmona, Alejandro Segarra and Barbosa, Pedro},
title = {{Overwintering egg mass adaptations of the eastern tent caterpillar, \textit{Malacosoma} \textit{americanum} (Fab.)(Lepidoptera: Lasiocampidae)}},
journal = {Journal of the New York Entomological Society},
year = {1983},
pages = {68--74}
}
@article{Gillingham:2009fx,
author = {Gillingham, M A F and Richardson, D S and Lovlie, H and Moynihan, A and Worley, K and Pizzari, T},
title = {{Cryptic preference for MHC-dissimilar females in male red junglefowl, Gallus gallus}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1659},
pages = {1083--1092},
month = mar
}
@article{Rodelsperger:2014ht,
author = {Rodelsperger, C and Neher, R A and Weller, A M and Eberhardt, G and Witte, H and Mayer, W E and Dieterich, C and Sommer, R J},
title = {{Characterization of Genetic Diversity in the Nematode Pristionchus pacificus from Population-Scale Resequencing Data.}},
journal = {Genetics},
year = {2014},
pages = {genetics.113.159855},
month = jan
}
@article{Delcourt:2012fp,
author = {Delcourt, Matthieu and Delcourt, Matthieu and Blows, Mark W and Blows, Mark W and Aguirre, J David and Aguirre, J David and Rundle, Howard D and Rundle, Howard D},
title = {{Evolutionary optimum for male sexual traits characterized using the multivariate Robertson-Price Identity.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = may
}
@article{Davies:2009jg,
author = {Davies, N B and Welbergen, J A},
title = {{Social Transmission of a Host Defense Against Cuckoo Parasitism}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5932},
pages = {1318--1320},
month = jun
}
@article{Schnell:2008tn,
author = {Schnell, Gary D and Kennedy, Michael L and Sanchez-Hernandez, Cornelio and de Lourdes Romero-Almaraz, Maria and Estevez, Brooke D N and Guerrero, Jose A and Best, Troy L and Wooten, Michael C and Owen, Robert D},
title = {{Habitat preference of the endemic tawny deermouse (\textit{Peromyscus} perfulvus), a species of conservation concern}},
journal = {Southwestern Naturalist},
year = {2008},
volume = {53},
number = {1},
pages = {9--20}
}
@article{Knapp:2006ew,
author = {Knapp, Leslie A and Robson, Julie and Robson, Julie and Waterhouse, John S and Waterhouse, John S},
title = {{Olfactory signals and the MHC: a review and a case study in Lemur catta.}},
journal = {American Journal of Primatology},
year = {2006},
volume = {68},
number = {6},
pages = {568--584},
month = jun
}
@article{Cai:2012fc,
author = {Cai, Guoshuai and Li, Hua and Lu, Yue and Huang, Xuelin and Lee, Juhee and M{\"u}ller, Peter and Ji, Yuan and Liang, Shoudan},
title = {{Accuracy of RNA-Seq and its dependence on sequencing depth}},
journal = {BMC Bioinformatics},
year = {2012},
volume = {13},
number = {Suppl 13},
pages = {S5},
month = aug
}
@article{Whiteman:2006bq,
author = {Whiteman, N K and Matson, K D and Bollmer, J L and Parker, P G},
title = {{Disease ecology in the Galapagos Hawk (\textit{Buteo galapagoensis}): host genetic diversity, parasite load and natural antibodies}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1588},
pages = {797--804},
month = apr
}
@article{Abdallah:2012bc,
author = {Abdallah, A M and Abdallah, A M and Rashid, M and Rashid, M and Adroub, S A and Adroub, S A and Arnoux, M and Arnoux, M and Ali, S and Ali, S and van Soolingen, D and van Soolingen, D and Bitter, W and Bitter, W and Pain, A and Pain, A},
title = {{Complete Genome Sequence of Mycobacterium phlei Type Strain RIVM601174}},
journal = {Journal of Bacteriology},
year = {2012},
volume = {194},
number = {12},
pages = {3284--3285},
month = may
}
@article{Young:2010ft,
author = {Young, J M and Massa, H F and Hsu, L and Trask, B J},
title = {{Extreme variability among mammalian V1R gene families}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {1},
pages = {10--18},
month = jan
}
@article{Durisko:2013hh,
author = {Durisko, Z and Durisko, Z and Dukas, R and Dukas, R},
title = {{Attraction to and learning from social cues in fruitfly larvae}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2013},
volume = {280},
number = {1767},
pages = {20131398--20131398},
month = jul
}
@article{Ubuka:2008fx,
author = {Ubuka, T and McGuire, N L and Calisi, R M and Perfito, N and Bentley, G E},
title = {{The control of reproductive physiology and behavior by gonadotropin-inhibitory hormone}},
journal = {Integrative and Comparative Biology},
year = {2008},
volume = {48},
number = {5},
pages = {560--569},
month = apr
}
@article{Krueger:2009ce,
author = {Kruger, O and Sorenson, M D and Davies, N B},
title = {{Does coevolution promote species richness in parasitic cuckoos?}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1674},
pages = {3871--3879},
month = sep
}
@article{Landau:2013hf,
author = {Landau, William Michael and Liu, Peng},
title = {{Dispersion Estimation and Its Effect on Test Performance in RNA-seq Data Analysis: A Simulation-Based Comparison of Methods}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {12},
pages = {e81415},
month = dec
}
@article{Roach:2010ef,
author = {Roach, J C and Glusman, G and Smit, A F A and Huff, C D and Hubley, R and Shannon, P T and Rowen, L and Pant, K P and Goodman, N and Bamshad, M and Shendure, J and Drmanac, R and Jorde, L B and Hood, L and Galas, D J},
title = {{Analysis of Genetic Inheritance in a Family Quartet by Whole-Genome Sequencing}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5978},
pages = {636--639},
month = apr
}
@article{Hoglund:1998ub,
author = {Hoglund, J and Widemo, F and Sutherland, WJ and Nordenfors, H},
title = {{Ruffs, Philomachus pugnax, and distribution models: can leks be regarded as patches?}},
journal = {Oikos},
year = {1998},
volume = {82},
number = {2},
pages = {370--376}
}
@article{Rothberg:2008il,
author = {Rothberg, Jonathan M and Leamon, John H},
title = {{The development and impact of 454 sequencing}},
journal = {Nature Biotechnology},
year = {2008},
volume = {26},
number = {10},
pages = {1117--1124},
month = oct
}
@article{Anonymous:2013kzb,
author = {Crawford, Jacob E and Nielsen, Rasmus},
title = {{Detecting adaptive trait loci in nonmodel systems: divergence or admixture mapping?}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {24},
pages = {6131--6148},
month = oct
}
@article{Arnold:2010cw,
author = {Arnold, Christian and Nunn, Charles L},
title = {{Phylogenetic Targeting of Research Effort in Evolutionary Biology}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {5},
pages = {601--612},
month = nov
}
@article{Anonymous:vOdn2IL3,
title = {{A genome-wide analysis of CpG dinucleotidesin the human genome distinguishes twodistinct classes of promoters}},
year = {2006},
pages = {1--7},
month = jan
}
@article{Shannon:1948wk,
author = {Shannon, C},
title = {{A mathematical theory of communication}},
journal = {The Bell Sys Tech J},
year = {1948},
volume = {27},
pages = {379--423},
month = jul
}
@article{Chown:2011jj,
author = {Chown, Steven L and Chown, Steven L and S{\o}rensen, Jesper G and S{\o}rensen, Jesper G and Terblanche, John S and Terblanche, John S},
title = {{Water loss in insects: An environmental change perspective}},
journal = {Journal of Insect Physiology},
year = {2011},
volume = {57},
number = {8},
pages = {1070--1084},
month = aug
}
@article{CluttonBrock:2001vz,
author = {Clutton-Brock, TH and Brotherton, PNM and Russell, AF and O'Riain, MJ and O'Riain, MJ and Gaynor, D and Kansky, R and Griffin, A and Griffin, A and Manser, M and Sharpe, L and Sharpe, L and McIlrath, GM and Small, T and Small, T and Moss, A and Moss, A and Monfort, S and Monfort, S},
title = {{Cooperation, control, and concession in meerkat groups}},
journal = {Science (New York, NY)},
year = {2001},
volume = {291},
number = {5503},
pages = {478--481}
}
@article{Morozova:2008cn,
author = {Morozova, Olena and Marra, Marco A},
title = {{Applications of next-generation sequencing technologies in functional genomics}},
journal = {Genomics},
year = {2008},
volume = {92},
number = {5},
pages = {255--264},
month = nov
}
@article{Zhang:2012io,
author = {Zhang, Ting and Zhang, Ting and Zhao, Xiuqin and Zhao, Xiuqin and Wang, Wensheng and Wang, Wensheng and Pan, Yajiao and Pan, Yajiao and Huang, Liyu and Huang, Liyu and Liu, Xiaoyue and Liu, Xiaoyue and Zong, Ying and Zong, Ying and Zhu, Linghua and Zhu, Linghua and Yang, Daichang and Yang, Daichang and Fu, Binying and Fu, Binying},
title = {{Comparative Transcriptome Profiling of Chilling Stress Responsiveness in Two Contrasting Rice Genotypes}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e43274},
month = aug
}
@article{Costanza:2009ft,
author = {Costanza, Robert},
title = {{Evolution is intelligent design}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {8},
pages = {414--415},
month = aug
}
@article{Edwards:1998vm,
author = {Edwards, SV and Gasper, J and March, M},
title = {{Genomics and polymorphism of Agph-DAB1, an Mhc class II B gene in red-winged blackbirds (\textit{Agelaius phoeniceus})}},
journal = {Molecular Biology and Evolution},
year = {1998},
volume = {15},
number = {3},
pages = {236--250}
}
@article{Mee:2004ht,
author = {Mee, A},
title = {{Extrapair paternity in the common sandpiper, Actitis hypoleucos, revealed by DNA fingerprinting}},
journal = {Animal Behaviour},
year = {2004},
volume = {67},
number = {2},
pages = {333--342},
month = feb
}
@article{Wingfield:1984wp,
author = {Wingfield, JC},
title = {{ANDROGENS AND MATING SYSTEMS - TESTOSTERONE-INDUCED POLYGYNY IN NORMALLY MONOGAMOUS BIRDS}},
journal = {Auk},
year = {1984},
volume = {101},
number = {4},
pages = {665--671}
}
@article{Evans:2010ki,
author = {Evans, J P},
title = {{Patterns of genetic variation and covariation in ejaculate traits reveal potential evolutionary constraints in guppies}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {5},
pages = {869--875},
month = oct
}
@article{Fromhage:2009es,
author = {Fromhage, Lutz and Kokko, Hanna and Reid, Jane M},
title = {{EVOLUTION OF MATE CHOICE FOR GENOME-WIDE HETEROZYGOSITY}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {3},
pages = {684--694},
month = mar
}
@article{Wong:2007fp,
author = {Wong, M Y L and Munday, P L and Buston, P M and Jones, G P},
title = {{Monogamy when there is potential for polygyny: tests of multiple hypotheses in a group-living fish}},
journal = {Behavioral Ecology},
year = {2007},
volume = {19},
number = {2},
pages = {353--361},
month = dec
}
@article{PARKER:1982tr,
author = {Parker, GA},
title = {{WHY ARE THERE SO MANY TINY SPERM - SPERM COMPETITION AND THE MAINTENANCE OF 2 SEXES}},
journal = {Journal of Theoretical Biology},
year = {1982},
volume = {96},
number = {2},
pages = {281--294}
}
@article{Coolen:2005kz,
author = {Coolen, M J L and Post, E and Davis, C C and Forney, L J},
title = {{Characterization of Microbial Communities Found in the Human Vagina by Analysis of Terminal Restriction Fragment Length Polymorphisms of 16S rRNA Genes}},
journal = {Applied and Environmental Microbiology},
year = {2005},
volume = {71},
number = {12},
pages = {8729--8737},
month = dec
}
@article{Smith:2009hg,
author = {Smith, Zachary D and Gu, Hongcang and Bock, Christoph and Gnirke, andreas and Meissner, Alexander},
title = {{High-throughput bisulfite sequencing in mammalian genomes}},
journal = {Methods},
year = {2009},
volume = {48},
number = {3},
pages = {226--232},
month = jul
}
@article{FernandezDuque:1997tb,
author = {FernandezDuque, E and Mason, WA and Mendoza, SP},
title = {{Effects of duration of separation on responses to mates and strangers in the monogamous titi monkey (Callicebus moloch)}},
journal = {American Journal of Primatology},
year = {1997},
volume = {43},
number = {3},
pages = {225--237}
}
@article{Russell:2009dm,
author = {Russell, J A and Moreau, C S and Goldman-Huertas, B and Fujiwara, M and Lohman, D J and Pierce, N E},
title = {{Bacterial gut symbionts are tightly linked with the evolution of herbivory in ants}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {50},
pages = {21236--21241},
month = dec
}
@article{Beaumont:1999ul,
author = {Beaumont, MA},
title = {{Detecting population expansion and decline using microsatellites}},
journal = {Genetics},
year = {1999},
volume = {153},
number = {4},
pages = {2013--2029}
}
@article{Arking:2008iw,
author = {Arking, Dan E and Cutler, David J. and Cutler, David J. and Brune, Camille W. and Brune, Camille W. and Teslovich, Tanya M. and Teslovich, Tanya M. and West, Kristen and West, Kristen and Ikeda, Morna and Ikeda, Morna and Rea, Alexis and Rea, Alexis and Guy, Moltu and Guy, Moltu and Lin, Shin and Lin, Shin and Cook, Edwin H. Jr and Cook, Edwin H. Jr and Chakravarti, Aravinda},
title = {{A common genetic variant in the neurexin superfamily member CNTNAP2 increases familial risk of autism}},
journal = {American Journal of Human Genetics},
year = {2008},
volume = {82},
number = {1},
pages = {160--164}
}
@article{Furey:2012ha,
author = {Furey, Terrence S.},
title = {{ChIP{\textendash}seq and beyond: new and improved methodologies to detect and characterize protein{\textendash}DNA interactions}},
year = {2012},
pages = {1--13},
month = oct
}
@article{Matsui:2011dr,
author = {Matsui, M and Matsui, M and Sharma, K C and Sharma, K C and Cooke, C and Cooke, C and Wakimoto, B T and Wakimoto, B T and Rasool, M and Rasool, M and Hayworth, M and Hayworth, M and Hylton, C A and Hylton, C A and Tomkiel, J E and Tomkiel, J E},
title = {{Nuclear Structure and Chromosome Segregation in \textit{Drosophila} Male Meiosis Depend on the Ubiquitin Ligase dTopors}},
journal = {Genetics},
year = {2011},
volume = {189},
number = {3},
pages = {779--793},
month = nov
}
@article{Parker:2006vk,
author = {Parker, TH and Parker, TH and Thompson, D and Thompson, D and Ligon, JD and Ligon, JD and Schneider, B and Schneider, B and Byrn, F and Byrn, F},
title = {{Does red junglefowl comb size predict sperm swimming speed and motility?}},
journal = {Ethology Ecology {\&} Evolution},
year = {2006},
volume = {18},
number = {1},
pages = {53--60}
}
@article{Korb:2009wl,
author = {Korb and Korb},
title = {{A Gene Necessary for Reproductive Supression in Termites}},
journal = {Science (New York, NY)},
year = {2009},
pages = {1--1},
month = may
}
@article{Clark:2009kt,
author = {Clark, Christopher James and Dudley, Robert},
title = {{Elaborate horns in a giant rhinoceros beetle incur negligible aerodynamic costs}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2013},
volume = {280},
number = {1758},
pages = {20130197--20130197},
month = mar
}
@article{Young:2006io,
author = {Young, andrew J and Clutton-Brock, TH},
title = {{Infanticide by subordinates influences reproductive sharing in cooperatively breeding meerkats.}},
journal = {Biology Letters},
year = {2006},
volume = {2},
number = {3},
pages = {385--387},
month = sep
}
@article{Taylor:2009cu,
author = {Taylor, J E},
title = {{The Genealogical Consequences of Fecundity Variance Polymorphism}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {3},
pages = {813--837},
month = jul
}
@article{Shalev:2011ez,
author = {Shalev, Idan and Shalev, Idan and Israel, Salomon and Israel, Salomon and Uzefovsky, Florina and Uzefovsky, Florina and Gritsenko, Inga and Gritsenko, Inga and Kaitz, Marsha and Kaitz, Marsha and Ebstein, Richard P. and Ebstein, Richard P.},
title = {{Vasopressin needs an audience: Neuropeptide elicited stress responses are contingent upon perceived social evaluative threats}},
journal = {Hormones and Behavior},
year = {2011},
volume = {60},
number = {1},
pages = {121--127}
}
@article{Nair:2006jr,
author = {Nair, H P},
title = {{Vasopressin and Pair-Bond Formation: Genes to Brain to Behavior}},
journal = {Physiology},
year = {2006},
volume = {21},
number = {2},
pages = {146--152},
month = apr
}
@article{Barraclough:2001wt,
author = {Barraclough, TG and Nee, S and Nee, S},
title = {{Phylogenetics and speciation}},
journal = {Trends In Ecology {\&} Evolution},
year = {2001},
volume = {16},
number = {7},
pages = {391--399}
}
@article{Miller:2003bp,
author = {Miller, C R},
title = {{The history of effective population size and genetic diversity in the Yellowstone grizzly (Ursus arctos): Implications for conservation}},
journal = {Proceedings of the National Academy of Sciences},
year = {2003},
volume = {100},
number = {7},
pages = {4334--4339},
month = mar
}
@article{Kemp:2011eg,
author = {Kemp, A H and Guastella, A J},
title = {{The Role of Oxytocin in Human Affect: A Novel Hypothesis}},
journal = {Current Directions in Psychological Science},
year = {2011},
volume = {20},
number = {4},
pages = {222--231},
month = aug
}
@article{BOORMAN:1976vd,
author = {BOORMAN, E and Parker, GA},
title = {{SPERM (EJACULATE) COMPETITION IN DROSOPHILA-MELANOGASTER, AND REPRODUCTIVE VALUE OF FEMALES TO MALES IN RELATION TO FEMALE AGE AND MATING STATUS}},
journal = {Ecological Entomology},
year = {1976},
volume = {1},
number = {3},
pages = {145--155}
}
@article{Granjon:2008im,
author = {Granjon, Laurent and Cosson, Jean-Francois},
title = {{Social relationships in Mastomys huberti as deduced from field and genetic analyses of multiple capture data}},
journal = {mammalia},
volume = {72},
number = {3}
}
@article{Loiseau:2009in,
author = {Loiseau, Claire and Richard, Murielle and Garnier, St{\'e}phane and Chastel, Olivier and Julliard, Romain and Zoorob, Rima and Sorci, Gabriele},
title = {{Diversifying selection on MHC class I in the house sparrow ( Passer domesticus)}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {7},
pages = {1331--1340},
month = apr
}
@article{Zhdanova:2008kf,
author = {Zhdanova, O L and Pudovkin, A I},
title = {{Nb_HetEx: A Program to Estimate the Effective Number of Breeders}},
journal = {Journal of Heredity},
year = {2008},
volume = {99},
number = {6},
pages = {694--695},
month = may
}
@article{Billeter:2012ce,
author = {Billeter, Jean-Christophe and Billeter, Jean-Christophe and Jagadeesh, Samyukta and Jagadeesh, Samyukta and Stepek, Nancy and Stepek, Nancy and Azanchi, Reza and Azanchi, Reza and Levine, Joel D and Levine, Joel D},
title = {{\textit{Drosophila} \textit{melanogaster} females change mating behaviour and offspring production based on social context.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1737},
pages = {2417--2425},
month = jun
}
@article{Fisher:2006bb,
author = {Fisher, Diana O and Double, Michael C and Blomberg, Simon P and Jennions, Michael D and Cockburn, andrew},
title = {{Post-mating sexual selection increases lifetime fitness of polyandrous females in the wild}},
journal = {Nature},
year = {2006},
volume = {444},
number = {7115},
pages = {89--92},
month = nov
}
@article{Gao:2013hf,
author = {Gao, Yuanyuan and Lin, Xueyan and Shi, Kerong and Yan, Zhengui and Wang, Zhonghua},
title = {{Bovine Mammary Gene Expression Profiling during the Onset of Lactation}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {8},
pages = {e70393},
month = aug
}
@article{Fournier:2001ij,
author = {Fournier, Denis and Keller, Laurent},
title = {{Partitioning of reproduction among queens in the Argentine ant, Linepithema humile}},
journal = {Animal Behaviour},
year = {2001},
volume = {62},
number = {6},
pages = {1039--1045},
month = dec
}
@article{Eckert:2009ja,
author = {Eckert, A J and Wegrzyn, J L and Pande, B and Jermstad, K D and Lee, J M and Liechty, J D and Tearse, B R and Krutovsky, K V and Neale, D B},
title = {{Multilocus Patterns of Nucleotide Diversity and Divergence Reveal Positive Selection at Candidate Genes Related to Cold Hardiness in Coastal Douglas Fir (Pseudotsuga menziesii var. menziesii)}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {1},
pages = {289--298},
month = sep
}
@article{MettkeHofmann:2013iy,
author = {Mettke-Hofmann, Claudia and Mettke-Hofmann, Claudia and Winkler, Hans and Winkler, Hans and Hamel, Paul B and Hamel, Paul B and Greenberg, Russell},
title = {{Migratory New World Blackbirds (Icterids) Are More Neophobic than Closely Related Resident Icterids}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {2},
pages = {e57565},
month = feb
}
@article{Fisher:1930tr,
author = {Fisher, R A},
title = {{The Theory of Natural Selection}},
year = {1930}
}
@article{Homolka:2011gm,
author = {Homolka, David and Ivanek, Robert and Forejt, Jiri and Jansa, Petr},
title = {{Differential Expression of Non-Coding RNAs and Continuous Evolution of the X Chromosome in Testicular Transcriptome of Two Mouse Species}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {2},
pages = {e17198},
month = feb
}
@article{Jackson:2010il,
author = {Jackson, Joseph A and Begon, Michael and Birtles, Richard and Paterson, Steve and Friberg, Ida M and Hall, Amy and Lowe, Ann and Ralli, Catriona and Turner, andrew and Zawadzka, Malgorzata and Bradley, Janette E},
title = {{The analysis of immunological profiles in wild animals: a case study on immunodynamics in the field vole, Microtus agrestis}},
journal = {Molecular Ecology},
year = {2010},
volume = {20},
number = {5},
pages = {893--909},
month = nov
}
@article{CostaIII:1993wh,
author = {Costa III, James T and Ross, Kenneth G.},
title = {{Seasonal decline in intracolony genetic relatedness in eastern tent caterpillars: implications for social evolution}},
journal = {Behavioral Ecology and Sociobiology},
year = {1993},
volume = {32},
number = {1},
pages = {47--54}
}
@article{Down:2005go,
author = {Down, Thomas and Down, Thomas and Hubbard, Tim J and Hubbard, Tim J },
title = {{NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence.}},
journal = {Nucleic Acids Research},
year = {2005},
volume = {33},
number = {5},
pages = {9}
}
@article{KernessWhiteman:2004te,
author = {Kerness Whiteman, Noah and Kerness Whiteman, Noah and Parker, Patricia G},
title = {{Effects of host sociality on ectoparasite population biology}},
journal = {Journal of Parasitology},
year = {2004},
volume = {90},
number = {5},
pages = {939--947}
}
@article{Potter:2005ej,
author = {Potter, Daniel A and Foss, Leslie and Baumler, Rebecca E and Held, David W},
title = {{Managing Eastern tent caterpillars \textit{Malacosoma} \textit{americanum} (F) on horse farms to reduce risk of mare reproductive loss syndrome.}},
journal = {Pest management science},
year = {2005},
volume = {61},
number = {1},
pages = {3--15},
month = jan
}
@article{Gubler:2010bh,
author = {Gubler, Marie Claire and Antignac, Corinne},
title = {{Renin{\textendash}angiotensin system in kidney development: renal tubular dysgenesis}},
journal = {Kidney international},
year = {2009},
volume = {77},
number = {5},
pages = {400--406},
month = nov
}
@article{Calvo:2009ux,
author = {Calvo, JH and Calvete, C and Martinez-Royo, A and Estrada, R and Miranda, MA and Borras, D and Sarto I Monteys, V and Pages, N and Delgado, JA and Collantes, F},
title = {{Variations in the mitochondrial cytochrome c oxidase subunit I gene indicate northward expanding populations of Culicoides imicola in Spain}},
journal = {Bulletin of Entomological Research},
year = {2009},
pages = {1--9}
}
@article{Roed:2005wq,
author = {Roed, KH and Holand, O and Gjostein, H and Hansen, H},
title = {{Variation in male reproductive success in a wild population of reindeer}},
journal = {Journal of Wildlife Management},
year = {2005},
volume = {69},
number = {3},
pages = {1163--1170}
}
@article{Cheung:2006bs,
author = {Cheung, Foo and Haas, Brian J and Goldberg, Susanne MD and May, Gregory D and Xiao, Yongli and Town, Christopher D},
journal = {BMC Genomics},
year = {2006},
volume = {7},
number = {1},
pages = {272}
}
@article{Anonymous:cD3GcKKw,
title = {{Rstats Admin}},
year = {2011},
pages = {1--71},
month = apr
}
@article{Oaten:2008tb,
author = {Oaten, Dustin K and Oaten, Dustin K and Larsen, Karl W and Larsen, Karl W},
title = {{Aspen Stands as Small Mammal "Hotspots" Within Dry Forest Ecosystems of British Columbia}},
journal = {Northwest Science},
year = {2008},
volume = {82},
number = {4},
pages = {276--285}
}
@article{Hunt:2013fi,
author = {Hunt, B G and Ometto, L and Ometto, L and Keller, L and Goodisman, M A D},
title = {{Evolution at Two Levels in Fire Ants: The Relationship between Patterns of Gene Expression and Protein Sequence Evolution}},
journal = {Molecular Biology and Evolution},
year = {2013},
volume = {30},
number = {2},
pages = {263--271},
month = jan
}
@article{Asura:2008ul,
author = {Asura},
title = {{I0990-9_OD07__4538}},
year = {2008},
pages = {1--6},
month = apr
}
@article{Edler:2008bl,
author = {Edler, Ralf and Friedl, Thomas W P},
title = {{Within-pair young are more immunocompetent than extrapair young in mixed-paternity broods of the red bishop}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {2},
pages = {391--401},
month = feb
}
@article{Bowles:2006jl,
author = {Bowles, S},
title = {{Group Competition, Reproductive Leveling, and the Evolution of Human Altruism}},
journal = {Science (New York, NY)},
year = {2006},
volume = {314},
number = {5805},
pages = {1569--1572},
month = dec
}
@article{Donald:2007wt,
author = {Donald, Paul F},
title = {{Adult sex ratios in wild bird populations}},
journal = {Ibis},
year = {2007},
volume = {149},
number = {4},
pages = {671--692}
}
@article{Podicheti:2009jh,
author = {Podicheti, R and Gollapudi, R and Dong, Q},
title = {{WebGBrowse--a web server for GBrowse}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {12},
pages = {1550--1551},
month = may
}
@article{Carver:2010hs,
author = {Carver, T and Bohme, U and Otto, T D and Parkhill, J and Berriman, M},
title = {{BamView: viewing mapped read alignment data in the context of the reference sequence}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {5},
pages = {676--677},
month = feb
}
@article{Medzhitov:1997we,
author = {Medzhitov, R and PrestonHurlburt, P and Janeway, CA},
title = {{A human homologue of the \textit{Drosophila} Toll protein signals activation of adaptive immunity}},
journal = {Nature},
year = {1997},
volume = {388},
number = {6640},
pages = {394--397}
}
@article{Cant:1998tg,
author = {Cant, MA},
title = {{A model for the evolution of reproductive skew without reproductive suppression}},
journal = {Animal Behaviour},
year = {1998},
volume = {55},
pages = {163--169}
}
@article{Hansen:2012jc,
author = {Hansen, Michael M and OLIVIERI, ISABELLE and WALLER, DONALD M and Nielsen, Einar E and {The GeM Working Group}},
title = {{Monitoring adaptive genetic responses to environmental change}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {6},
pages = {1311--1329},
month = jan
}
@article{Reichard:2008ic,
author = {Reichard, M and Smith, C and Bryja, J},
title = {{Seasonal change in the opportunity for sexual selection}},
journal = {Molecular Ecology},
year = {2007},
volume = {17},
number = {2},
pages = {642--651},
month = dec
}
@article{Wedell:2002tu,
author = {Wedell, N and Wiklund, C and Cook, PA},
title = {{Monandry and polyandry as alternative lifestyles in a butterfly}},
journal = {Behavioral Ecology},
year = {2002},
volume = {13},
number = {4},
pages = {450--455}
}
@article{De:2002uu,
author = {De, S and De, S and Singh, RK and Singh, RK and Butchaiah, G and Butchaiah, G},
title = {{MHC-DRB exon 2 allele polymorphism in Indian river buffalo (\emph{Bubalus bubalis})}},
journal = {Animal Genetics},
year = {2002},
volume = {33},
number = {3},
pages = {215--219}
}
@article{Mamanova:2010jg,
author = {Mamanova, Lira and andrews, Robert M and James, Keith D and Sheridan, Elizabeth M and Ellis, Peter D and Langford, Cordelia F and Ost, Tobias W B and Collins, John E and Turner, Daniel J},
title = {{FRT-seq: amplification-free, strand-specific transcriptome sequencing}},
journal = {Nature Methods},
year = {2010},
volume = {7},
number = {2},
pages = {130--132},
month = jan
}
@article{Peng:2009vs,
author = {Peng, Zuogang and Elango, Navin and Wildman, Derek E and Yi, Soojin V},
title = {{Primate phylogenomics: developing numerous nuclear non-coding, non-repetitive markers for ecological and phylogenetic applications and analysis of evolutionary rate variation.}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
pages = {247}
}
@article{Shawkey:2003dz,
author = {Shawkey, M D and Estes, A M and Siefferman, L M and Hill, G E},
title = {{Nanostructure predicts intraspecific variation in ultraviolet-blue plumage colour.}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2003},
volume = {270},
number = {1523},
pages = {1455--1460},
month = jul
}
@article{MarinBriggiler:2008br,
author = {Marin-Briggiler, C I and Veiga, M F and Matos, M L and Gonzalez Echeverria, M F and Furlong, L I and Vazquez-Levin, M H},
title = {{Expression of epithelial cadherin in the human male reproductive tract and gametes and evidence of its participation in fertilization}},
journal = {Molecular Human Reproduction},
year = {2008},
volume = {14},
number = {10},
pages = {561--571},
month = aug
}
@article{He:2012jh,
author = {He, Miao and Strong, AM and He, Miao and Wang, Ying and Rimmer, CC and Hua, Wenping and Hua, Wenping and McFarland, KP and Zhang, Yuan and Zhang, Yuan and Wang, Zhezhi and Wang, Zhezhi},
title = {{De Novo Sequencing of Hypericum perforatum Transcriptome to Identify Potential Genes Involved in the Biosynthesis of Active Metabolites}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e42081},
month = jul
}
@article{MacMillen:1967ux,
author = {MacMillen, R E and MacMillen, R E and Lee, A K and Lee, A K},
title = {{Australian desert mice: independence of exogenous water.}},
journal = {Science (New York, NY)},
year = {1967},
volume = {158},
number = {3799},
pages = {383--385},
month = oct
}
@article{DePristo:2011fo,
author = {DePristo, Mark A and Banks, Eric and Poplin, Ryan and Garimella, Kiran V and Maguire, Jared R and Hartl, Christopher and Philippakis, Anthony A and del Angel, Guillermo and Rivas, Manuel A and Hanna, Matt and McKenna, Aaron and Fennell, Tim J and Kernytsky, andrew M and Sivachenko, andrey Y and Cibulskis, Kristian and Gabriel, Stacey B and Altshuler, David and Daly, Mark J},
title = {{A framework for variation discovery and genotyping using next-generation DNA sequencing data}},
journal = {Nature Genetics},
year = {2011},
volume = {43},
number = {5},
pages = {491--498},
month = apr
}
@article{Czibere:2011fr,
author = {Czibere, Ludwig and Czibere, Ludwig and Baur, Laura A and Baur, Laura A and Wittmann, Anke and Wittmann, Anke and Gemmeke, Katja and Gemmeke, Katja and Steiner, andrea and Steiner, andrea and Weber, Peter and Weber, Peter and P{\"u}tz, Benno and P{\"u}tz, Benno and Ahmad, Nafees and Ahmad, Nafees and Bunck, Mirjam and Bunck, Mirjam and Graf, Cornelia and Graf, Cornelia and Widner, Regina and Widner, Regina and K{\"u}hne, Claudia and K{\"u}hne, Claudia and Panhuysen, Markus and Panhuysen, Markus and Hambsch, Boris and Hambsch, Boris and Rieder, Gabriele and Rieder, Gabriele and Reinheckel, Thomas and Reinheckel, Thomas and Peters, Christoph and Peters, Christoph and Holsboer, Florian and Holsboer, Florian and Landgraf, Rainer and Landgraf, Rainer and Deussing, Jan M and Deussing, Jan M},
title = {{Profiling Trait Anxiety: Transcriptome Analysis Reveals Cathepsin}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {8},
pages = {e23604},
month = aug
}
@article{Howison:2013bt,
author = {Howison, Mark and Howison, Mark and Dunn, Casey W and Dunn, Casey W and Zapata, Felipe and Zapata, Felipe},
title = {{Toward a statistically explicit understanding of \textit{de novo} sequence assembly.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
month = sep
}
@article{Eliassen:2008dm,
author = {Eliassen, Sigrunn and Kokko, Hanna},
title = {{Current analyses do not resolve whether extra-pair paternity is male or female driven}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {11},
pages = {1795--1804},
month = jun
}
@article{Moses:2006jk,
author = {Moses, Alan M and Pollard, Daniel A and Nix, David A and Iyer, Venky N and Li, Xiao-Yong and Biggin, Mark D and Eisen, Michael B},
title = {{Large-Scale Turnover of Functional Transcription Factor Binding Sites in \textit{Drosophila}}},
journal = {PLOS Computational Biology},
year = {2006},
volume = {2},
number = {10},
pages = {e130}
}
@article{Tarazona:2011fi,
author = {Tarazona, S and Tarazona, S and Garcia-Alcalde, F and Garcia-Alcalde, F and Dopazo, J and Dopazo, J and Ferrer, A and Ferrer, A and Conesa, A},
title = {{Differential expression in RNA-seq: A matter of depth}},
journal = {Genome Research},
year = {2011},
month = sep
}
@article{Bolnick:2006fl,
author = {Bolnick, D A},
title = {{Asymmetric Male and Female Genetic Histories among Native Americans from Eastern North America}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {23},
number = {11},
pages = {2161--2174},
month = aug
}
@article{EstebanesGonzalez:2005il,
author = {Est{\'e}banes-Gonz{\'a}lez, Mar{\'\i}a L and Est{\'e}banes-Gonz{\'a}lez, Mar{\'\i}a L and Cervantes, Fernando A and Cervantes, Fernando A},
title = {{Mites and ticks associated with some small mammals in mexico}},
journal = {International Journal of Acarology},
year = {2005},
volume = {31},
number = {1},
pages = {23--37},
month = mar
}
@article{Crane:2011fe,
author = {Crane, Adam L and Crane, Adam L and Fritts, andrea K and Fritts, andrea K and Mathis, Alicia and Mathis, Alicia and Lisek, John C and Lisek, John C and Barnhart, M Chris and Barnhart, M Chris},
title = {{Do gill parasites influence the foraging and antipredator behaviour of rainbow darters, Etheostoma caeruleum?}},
journal = {Animal Behaviour},
year = {2011},
pages = {1--7},
month = aug
}
@article{BROOKER:1990up,
author = {BROOKER, MG and BROOKER, MG and Rowley, I and ADAMS, M and BAVERSTOCK, PR and BAVERSTOCK, PR},
title = {{PROMISCUITY - AN INBREEDING AVOIDANCE MECHANISM IN A SOCIALLY MONOGAMOUS SPECIES}},
journal = {Behavioral Ecology and Sociobiology},
year = {1990},
volume = {26},
number = {3},
pages = {191--199}
}
@article{Bashalkhanov:2013ega,
author = {Bashalkhanov, Stanislav and Eckert, andrew J and Rajora, Om P},
title = {{Genetic signatures of natural selection in response to air pollution in red spruce (Picea rubens, Pinaceae)}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {23},
pages = {5877--5889},
month = oct
}
@article{Chrysochou:2009gz,
author = {Chrysochou, Constantina and Sinha, Smeeta and Chalmers, Nicholas and Kalra, Paul R and Kalra, Philip A},
title = {{Anuric acute renal failure and pulmonary oedema: A case for urgent action}},
journal = {International Journal of Cardiology},
year = {2009},
volume = {132},
number = {1},
pages = {e31--e33},
month = feb
}
@article{DiazMunoz:2011jb,
author = {D{\'\i}az-Mu{\~n}oz, Samuel L and D{\'\i}az-Mu{\~n}oz, Samuel L},
title = {{Paternity and relatedness in a polyandrous nonhuman primate: testing adaptive hypotheses of male reproductive cooperation}},
journal = {Animal Behaviour},
year = {2011},
pages = {1--9},
month = jul
}
@article{Bradbury:1977vw,
author = {Bradbury, J W and Vehrencamp, S L},
title = {{SOCIAL-ORGANIZATION AND FORAGING IN EMBALLONURID BATS .4. PARENTAL INVESTMENT PATTERNS}},
journal = {Behavioral Ecology and Sociobiology},
year = {1977},
volume = {2},
number = {1},
pages = {19--29}
}
@article{Chronopoulos:2010gh,
author = {Chronopoulos, Alexandra and Rosner, Mitchell H and Cruz, Dinna N and Ronco, Claudio},
title = {{Acute kidney injury in elderly intensive care patients: a review}},
journal = {Intensive Care Medicine},
year = {2010},
volume = {36},
number = {9},
pages = {1454--1464},
month = jul
}
@article{Engstrom:2013cx,
author = {Engstr{\"o}m, P{\"a}r G and Steijger, Tamara and Sipos, Botond and Grant, Gregory R and Kahles, andr{\'e} and Alioto, Tyler and Behr, Jonas and Bertone, Paul and Bohnert, Regina and Campagna, Davide and Davis, Carrie A and Dobin, Alexander and Gingeras, Thomas R and Goldman, Nick and Guig{\'o}, Roderic and Harrow, Jennifer and Hubbard, Tim J and Jean, G{\'e}raldine and Kosarev, Peter and Li, Sheng and Liu, Jinze and Mason, Christopher E and Molodtsov, Vladimir and Ning, Zemin and Ponstingl, Hannes and Prins, Jan F and R{\"a}tsch, Gunnar and Ribeca, Paolo and Seledtsov, Igor and Solovyev, Victor and Valle, Giorgio and Vitulo, Nicola and Wang, Kai and Wu, Thomas D and Zeller, Georg},
title = {{Systematic evaluation of spliced alignment programs for RNA-seq data}},
journal = {Nature Methods},
year = {2013},
volume = {10},
number = {12},
pages = {1185--1191},
month = nov
}
@article{Chelini:2011fc,
author = {Chelini, Marie Odile Monier and Chelini, Marie Odile Monier and Palme, Rupert and Palme, Rupert and Otta, Emma and Otta, Emma},
title = {{Social stress and reproductive success in the female Syrian hamster: Endocrine and behavioral correlates.}},
journal = {Physiology {\&} Behavior},
year = {2011},
volume = {102},
number = {1},
pages = {76--83},
month = jun
}
@article{Ramskold:2009ii,
author = {Ramsk{\"o}ld, Daniel and Wang, Eric T and Burge, Christopher B and Sandberg, Rickard},
title = {{An Abundance of Ubiquitously Expressed Genes Revealed by Tissue Transcriptome Sequence Data}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {12},
pages = {e1000598},
month = dec
}
@article{Hahn:2008cv,
author = {Hahn, Matthew W},
title = {{TOWARD A SELECTION THEORY OF MOLECULAR EVOLUTION}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {2},
pages = {255--265},
month = feb
}
@article{Weigl:2009vz,
author = {Weigl},
title = {{THE NATURAL HISTORY CONUNDRUM REVISITED:
MAMMALOGY BEGINS AT HOME}},
journal = {Journal of Mammalogy},
year = {2009},
pages = {1--5},
month = mar
}
@article{Hurst:2009jt,
author = {Hurst, Laurence D},
title = {{Evolutionary genomics: A positive becomes a negative}},
journal = {Nature},
year = {2009},
volume = {457},
number = {7229},
pages = {543--544},
month = jan
}
@article{Dillies:2012gz,
author = {Dillies, M A and Dillies, M A and Rau, A and Rau, A and Aubert, J and Aubert, J and Hennequet-Antier, C and Hennequet-Antier, C and Jeanmougin, M and Jeanmougin, M and Servant, N and Servant, N and Keime, C and Keime, C and Marot, G and Marot, G and Castel, D and Castel, D and Estelle, J and Estelle, J and Guernec, G and Guernec, G and Jagla, B and Jagla, B and Jouneau, L and Jouneau, L and Laloe, D and Laloe, D and Le Gall, C and Le Gall, C and Schaeffer, B and Schaeffer, B and Le Crom, S and Le Crom, S and Guedj, M and Guedj, M and Jaffrezic, F and Jaffrezic, F and {on behalf of The French StatOmique Consortium} and {on behalf of The French StatOmique Consortium}},
title = {{A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis}},
journal = {Briefings In Bioinformatics},
year = {2012},
month = sep
}
@article{Rodrigue:2009cz,
author = {Rodrigue, N and Kleinman, C L and Philippe, H and Lartillot, N},
title = {{Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between Codons}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {7},
pages = {1663--1676},
month = jun
}
@article{Sullivan:1999vd,
author = {Sullivan, J and Swofford, DL and Naylor, GJP},
title = {{The effect of taxon sampling on estimating rate heterogeneity parameters of maximum-likelihood models}},
journal = {Molecular Biology and Evolution},
year = {1999},
volume = {16},
number = {10},
pages = {1347--1356}
}
@article{Werner:2010iy,
author = {Werner, T},
title = {{Next generation sequencing in functional genomics}},
journal = {Briefings In Bioinformatics},
year = {2010},
volume = {11},
number = {5},
pages = {499--511},
month = sep
}
@article{Martin:2002jl,
author = {Martin, AP},
title = {{Phylogenetic approaches for describing and comparing the diversity of microbial communities}},
journal = {Applied and Environmental Microbiology},
year = {2002},
volume = {68},
number = {8},
pages = {3673--3682}
}
@article{DHONDT:1994ws,
author = {DHONDT, AA and ADRIAENSEN, F},
title = {{CAUSES AND EFFECTS OF DIVORCE IN THE BLUE TIT PARUS-CAERULEUS}},
journal = {Journal of Animal Ecology},
year = {1994},
volume = {63},
number = {4},
pages = {979--987}
}
@article{Ding:2012gm,
author = {Ding, Yun and Ding, Yun and Zhou, Qi and Wang, Wen and Wang, Wen},
title = {{Origins of New Genes and Evolution of Their Novel Functions}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2012},
volume = {43},
number = {1},
pages = {345--363},
month = dec
}
@book{Barrett:1981wa,
author = {Barrett, PH and Weinshank, DJ and Gottleber, TT},
title = {{A concordance to Darwin's Origin of species, first edition }},
publisher = {Cornell University Press},
year = {1981},
address = {Ithaca},
month = may
}
@article{Edwards:2009bca,
author = {Edwards, S V},
title = {{Natural selection and phylogenetic analysis}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {22},
pages = {8799--8800},
month = jun
}
@article{Silver:2013cc,
author = {Silver, D H and Ben-Elazar, S and Bogoslavsky, A and Yanai, I},
title = {{ELOPER: elongation of paired-end reads as a pre-processing tool for improved \textit{de novo} genome assembly}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {11},
pages = {1455--1457},
month = may
}
@article{Anonymous:LTTpMpZJ,
title = {{nj7320-123a}},
year = {2010},
pages = {1--3},
month = oct
}
@article{Sardell:2012cq,
author = {Sardell, R J and Arcese, P and Reid, J M},
title = {{offspring fitness varies with parental extra-pair status in song sparrows, \textit{Melospiza} \textit{melodia}}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1744},
pages = {4078--4086},
month = aug
}
@article{Bartolo:2007hy,
author = {Bartolo, Ray C and Donald, John A},
title = {{The distribution of renal hyaluronan and the expression of hyaluronan synthases during water deprivation in the Spinifex hopping mouse, \textit{Notomys alexis}.}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2007},
volume = {148},
number = {4},
pages = {853--860},
month = dec
}
@article{Bartolo:2008bf,
author = {Bartolo, Ray C and Donald, John A},
title = {{The effect of water deprivation on the tonicity responsive enhancer binding protein (TonEBP) and TonEBP-regulated genes in the kidney of the Spinifex hopping mouse, \textit{Notomys alexis}.}},
journal = {The Journal of experimental biology},
year = {2008},
volume = {211},
number = {Pt 6},
pages = {852--859},
month = mar
}
@article{Doak:1995ty,
author = {Doak, DF and Doak, DF},
title = {{Source-sink models and the problem of habitat degradation: General models and applications to the Yellowstone grizzly}},
journal = {Conservation Biology},
year = {1995},
volume = {9},
number = {6},
pages = {1370--1379}
}
@article{Chang:2011js,
author = {Chang, Ti-Cheng and Klabnik, Jessica L. and Liu, Wan-Sheng},
title = {{Regional Selection Acting on the OFD1 Gene Family}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {10}
}
@article{Scott:2009bf,
author = {Scott, L J and Muglia, P and Kong, X Q and Guan, W and Flickinger, M and Upmanyu, R and Tozzi, F and Li, J Z and Burmeister, M and Absher, D and Thompson, R C and Francks, C and Meng, F and Antoniades, A and Southwick, A M and Schatzberg, A F and Bunney, W E and Barchas, J D and Jones, E G and Day, R and Matthews, K and McGuffin, P and Strauss, J S and Kennedy, J L and Middleton, L and Roses, A D and Watson, S J and Vincent, J B and Myers, R M and Farmer, A E and Akil, H and Burns, D K and Boehnke, M},
title = {{Genome-wide association and meta-analysis of bipolar disorder in individuals of European ancestry}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
month = apr
}
@article{Ball:1996vd,
author = {Ball, MA and Ball, MA and Parker, GA},
title = {{Sperm competition games: External fertilization and ''adaptive'' infertility}},
journal = {Journal of Theoretical Biology},
year = {1996},
volume = {180},
number = {2},
pages = {141--150}
}
@article{Wade:2010hla,
author = {Wade, Michael J and Wilson, David S and Goodnight, Charles and Taylor, Doug and Bar-Yam, Yaneer and de Aguiar, Marcus A M and Stacey, Blake and Werfel, Justin and Hoelzer, Guy A and Brodie, III, Edmund D and Fields, Peter and Breden, Felix and Linksvayer, Timothy A and Fletcher, Jeffrey A and Richerson, Peter J and Bever, James D and Van Dyken, J David and Zee, Peter},
title = {{Multilevel and kin selection in a connected world}},
journal = {Nature},
year = {2010},
volume = {463},
number = {7283},
pages = {E8--E9},
month = feb
}
@article{Mayrose:2005dh,
author = {Mayrose, I and Friedman, N and Pupko, T},
title = {{A Gamma mixture model better accounts for among site rate heterogeneity}},
journal = {Bioinformatics (Oxford, England)},
year = {2005},
volume = {21},
number = {Suppl 2},
pages = {ii151--ii158},
month = oct
}
@article{Foltz:1981wp,
author = {Foltz, David W},
title = {{Genetic evidence for long-term monogamy in a small rodent, \emph{\textit{\textit{Peromyscus} polionotus}}}},
journal = {The American Naturalist},
year = {1981},
volume = {117},
number = {5},
pages = {665--675}
}
@article{Ament:2011bf,
author = {Ament, S A and Velarde, R A and Kolodkin, M H and Moyse, D and Robinson, G E},
title = {{Neuropeptide Y-like signalling and nutritionally mediated gene expression and behaviour in the honey bee.}},
journal = {Insect molecular biology},
year = {2011},
volume = {20},
number = {3},
pages = {335--345},
month = jun
}
@article{Koten:2009ev,
author = {Koten, J W and Wood, G and Hagoort, P and Goebel, R and Propping, P and Willmes, K and Boomsma, D I},
title = {{Genetic Contribution to Variation in Cognitive Function: An fMRI Study in Twins}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5922},
pages = {1737--1740},
month = mar
}
@article{Oh:2011wk,
author = {Oh, Kevin P and Oh, Kevin P},
title = {{Inclusive fitness of 'kissing cousins': new evidence of a role for kin selection in the evolution of extra-pair mating in birds.}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {13},
pages = {2657--2659},
month = jul
}
@article{Lou:2010kw,
author = {Lou, Melanie and Brian Golding, G},
title = {{Assigning sequences to species in the absence of large interspecific differences}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2010},
volume = {56},
number = {1},
pages = {187--194},
month = jul
}
@article{Jacquot:1998tt,
author = {Jacquot, S and Merienne, K and de Cesare, D and Pannetier, S and Pannetier, S and Mandel, JL and Mandel, JL and Sassone-Corsi, P and Sassone-Corsi, P and Hanauer, A and Hanauer, A},
title = {{Mutation analysis of the RSK2 gene in Coffin-Lowry patients: Extensive allelic heterogeneity and a high rate of \textit{de novo} mutations}},
journal = {American Journal of Human Genetics},
year = {1998},
volume = {63},
number = {6},
pages = {1631--1640}
}
@article{Price:2009ds,
author = {Price, M N and Dehal, P S and Arkin, A P},
title = {{FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {7},
pages = {1641--1650},
month = jun
}
@article{Hughes:2011bi,
author = {Hughes, David P},
title = {{Recent developments in sociobiology and the scientific method}},
journal = {Trends In Ecology {\&} Evolution},
year = {2011},
volume = {26},
number = {2},
pages = {57--58},
month = feb
}
@article{Bradley:2010ck,
author = {Bradley, Robert K and Li, Xiao-Yong and Trapnell, Cole and Davidson, Stuart and Pachter, Lior and Chu, Hou Cheng and Tonkin, Leath A and Biggin, Mark D and Eisen, Michael B},
title = {{Binding Site Turnover Produces Pervasive Quantitative Changes in Transcription Factor Binding between Closely Related \textit{Drosophila} Species}},
journal = {PLOS Biology},
year = {2010},
volume = {8},
number = {3},
pages = {e1000343},
month = mar
}
@article{Young:2010eb,
author = {Young, Michael J and Simmons, Leigh W and Evans, Jonathan P},
title = {{Pre- and post-mating sexual selection both favor large males in a rainbowfish}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {64},
number = {6},
pages = {915--925},
month = feb
}
@article{Bostrom:2010hi,
author = {Bostrom, Meredith A and Lu, Lingyi and Chou, Jeff and Hicks, Pamela J and Xu, Jianzhao and Langefeld, Carl D and Bowden, Donald W and Freedman, Barry I},
title = {{Candidate genes for non-diabetic ESRD in African Americans: a genome-wide association study using pooled DNA}},
journal = {Human Genetics},
year = {2010},
volume = {128},
number = {2},
pages = {195--204},
month = jun
}
@article{Cheng:2009hr,
author = {Cheng, Feng and Chen, Wei and Richards, Elliott and Deng, Libin and Zeng, Changqing},
title = {{SNP@Evolution: a hierarchical database of positive selection on the human genome}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {221}
}
@article{Scheffler:2006ck,
author = {Scheffler, K and Martin, D P and Seoighe, C},
title = {{Robust inference of positive selection from recombining coding sequences}},
journal = {Bioinformatics (Oxford, England)},
year = {2006},
volume = {22},
number = {20},
pages = {2493--2499},
month = oct
}
@article{Garnier:2009cv,
author = {Garnier, Simon and Guerecheau, Aurelie and Combe, Maud and Fourcassie, Vincent and Theraulaz, Guy},
title = {{Path selection and foraging efficiency in Argentine ant transport networks}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {8},
pages = {1167--1179},
month = mar
}
@article{Aj:2009uy,
author = {Aj4},
title = {{The Evolution of Amastin Surface Glycoproteins in Trypanosomatid Parasites}},
year = {2009},
pages = {1--38},
month = sep
}
@article{Parra:2010dg,
author = {Parra, Juan L and McGuire, Jimmy A and Graham, Catherine H},
title = {{Incorporating Clade Identity in Analyses of Phylogenetic Community Structure: An Example with Hummingbirds}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {5},
pages = {573--587},
month = nov
}
@article{Arenz:1999ua,
author = {Arenz, CL and Leger, DW},
title = {{Thirteen-lined ground squirrel (Sciuridae : Spermophilus tridecemlineatus) antipredator vigilance: Monitoring the sky for aerial predators}},
journal = {Ethology},
year = {1999},
volume = {105},
number = {9},
pages = {807--816}
}
@article{Kingston:2009ka,
author = {Kingston, Sarah E and Adams, Lara D and Rosel, Patricia E},
title = {{Testing mitochondrial sequences and anonymous nuclear markers for phylogeny reconstruction in a rapidly radiating group: molecular systematics of the Delphininae (Cetacea: Odontoceti: Delphinidae)}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {245}
}
@article{Bonsall:2006bv,
author = {Bonsall, Michael B},
title = {{The evolution of anisogamy: The adaptive significance of damage, repair and mortality}},
journal = {Journal of Theoretical Biology},
year = {2006},
volume = {238},
number = {1},
pages = {198--210},
month = jan
}
@article{Lillacci:2010jm,
author = {Lillacci, Gabriele and Khammash, Mustafa},
title = {{Parameter Estimation and Model Selection in Computational Biology}},
journal = {PLOS Computational Biology},
year = {2010},
volume = {6},
number = {3},
pages = {e1000696},
month = mar
}
@article{Bonnefont:2011bc,
author = {Bonnefont, Cecile MD and Toufeer, Mehdi and Caubet, Cecile and Foulon, Eliane and Tasca, Christian and Aurel, Marie-Rose and Bergonier, Dominique and Boullier, Severine and Robert-Granie, Christele and Foucras, Gilles and Rupp, Rachel},
title = {{Transcriptomic analysis of milk somatic cells in mastitis resistant and susceptible sheep upon challenge with Staphylococcus epidermidis and Staphylococcus aureus.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {208},
month = apr
}
@article{Luo:2009jb,
author = {Luo, Minjie and Cui, Xiangfeng and Fredman, David and Brookes, Anthony J and Azaro, Marco A and Greenawalt, Danielle M and Hu, Guohong and Wang, Hui-Yun and Tereshchenko, Irina V and Lin, Yong and Shentu, Yue and Gao, Richeng and Shen, Li and Li, Honghua},
title = {{Genetic Structures of Copy Number Variants Revealed by Genotyping Single Sperm}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {4},
pages = {e5236},
month = apr
}
@article{Matschiner:2009hr,
author = {Matschiner, M and Salzburger, W},
title = {{TANDEM: integrating automated allele binning into genetics and genomics workflows}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {15},
pages = {1982--1983},
month = jul
}
@article{Schwanz:2008cd,
author = {Schwanz, Lisa E},
title = {{Chronic parasitic infection alters reproductive output in deer mice}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {8},
pages = {1351--1358},
month = feb
}
@article{Sefc:2008cm,
author = {Sefc, Kristina M and Mattersdorfer, Karin and Sturmbauer, Christian and Koblm{\"u}ller, Stephan},
title = {{High frequency of multiple paternity in broods of a socially monogamous cichlid fish with biparental nest defence}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {10},
pages = {2531--2543},
month = apr
}
@article{Eid:2009kva,
author = {Eid, J and Fehr, A and Gray, J and Luong, K and Lyle, J and Otto, G and Peluso, P and Rank, D and Baybayan, P and Bettman, B and Bibillo, A and Bjornson, K and Chaudhuri, B and Christians, F and Cicero, R and Clark, S and Dalal, R and deWinter, A and Dixon, J and Foquet, M and Gaertner, A and Hardenbol, P and Heiner, C and Hester, K and Holden, D and Kearns, G and Kong, X and Kuse, R and Lacroix, Y and Lin, S and Lundquist, P and Ma, C and Marks, P and Maxham, M and Murphy, D and Park, I and Pham, T and Phillips, M and Roy, J and Sebra, R and Shen, G and Sorenson, J and Tomaney, A and Travers, K and Trulson, M and Vieceli, J and Wegener, J and Wu, D and Yang, A and Zaccarin, D and Zhao, P and Zhong, F and Korlach, J and Turner, S},
title = {{Real-time DNA sequencing from single polymerase molecules.}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5910},
pages = {133--138},
month = jan
}
@article{Prokupek:2008jb,
author = {Prokupek, Adrianne and Hoffmann, Federico and Eyun, Seong-Il and Moriyama, Etsuko and Zhou, Min and Harshman, Lawrence},
title = {{AN EVOLUTIONARY EXPRESSED SEQUENCE TAG ANALYSIS OF DROSOPHILA SPERMATHECA GENES}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {11},
pages = {2936--2947},
month = nov
}
@article{Brunschwig:2012dk,
author = {Brunschwig, H and Levi, L and Ben-David, E and Williams, R W and Yakir, B and Shifman, S},
title = {{Fine-Scale Maps of Recombination Rates and Hotspots in the Mouse Genome}},
journal = {Genetics},
year = {2012},
volume = {191},
number = {3},
pages = {757--764},
month = jul
}
@article{Mayer:2007dg,
author = {Mayer, F and Brunner, A},
title = {{Non-neutral evolution of the major histocompatibility complex class II gene DRB1 in the sac-winged bat Saccopteryx bilineata}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {3},
pages = {257--264},
month = may
}
@article{Muller:2010ir,
author = {Muller, J and Creevey, C J and Thompson, J D and Arendt, D and Bork, P},
title = {{AQUA: automated quality improvement for multiple sequence alignments}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {2},
pages = {263--265},
month = jan
}
@article{Dowell:2010hh,
author = {Dowell, R D and Ryan, O and Jansen, A and Cheung, D and Agarwala, S and Danford, T and Bernstein, D A and Rolfe, P A and Heisler, L E and Chin, B and Nislow, C and Giaever, G and Phillips, P C and Fink, G R and Gifford, D K and Boone, C},
title = {{Genotype to Phenotype: A Complex Problem}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5977},
pages = {469--469},
month = apr
}
@article{Anonymous:rUYHMWVz,
title = {{Juan Parra DDIG}},
year = {2006},
pages = {8},
month = nov
}
@article{Lewis:2005ew,
author = {Lewis, Rebecca L and Beckenbach, andrew T and Mooers, Arne {\O}},
title = {{The phylogeny of the subgroups within the \textit{melanogaster} species group: Likelihood tests on COI and COII sequences and a Bayesian estimate of phylogeny}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2005},
volume = {37},
number = {1},
pages = {15--24},
month = oct
}
@article{Crew:2003ih,
author = {Crew, MD and Bates, LM},
title = {{Sequence, expression, and polymorphism of the \emph{\textit{Peromyscus} leucopus} MHC class Ib gene, M4}},
journal = {Immunogenetics},
year = {2003},
volume = {55},
number = {2},
pages = {95--99}
}
@article{Goldman:2000vx,
author = {Goldman, N and anderson, JP and Rodrigo, AG},
title = {{Likelihood-based tests of topologies in phylogenetics}},
journal = {Systematic Biology},
year = {2000},
volume = {49},
number = {4},
pages = {652--670}
}
@article{Lank:2002vw,
author = {Lank, D B and Lank, D B and Smith, C M and Smith, C M and Hanotte, O and Ohtonen, A and Ohtonen, A and Bailey, S and Bailey, S and Burke, T},
title = {{High frequency of polyandry in a lek mating system}},
journal = {Behavioral Ecology},
volume = {13},
pages = {209--215}
}
@article{HAAPANIEMI:2011bk,
author = {HAAPANIEMI, K and HAAPANIEMI, K and PAMILO, P and PAMILO, P},
title = {{Reproductive conflicts in polyandrous and polygynous ant Formica sanguinea}},
journal = {Molecular Ecology},
year = {2011},
pages = {no--no},
month = dec
}
@article{Duneau:2012gy,
author = {Duneau, D. and Ebert, D.},
title = {{Host Sexual Dimorphism and Parasite Adaptation}},
journal = {PLOS Biology},
year = {2012},
volume = {10},
number = {2},
pages = {e1001271}
}
@article{Jones:2010dt,
author = {Jones, Adam G and Small, Clayton M and Paczolt, Kimberly A and Ratterman, Nicholas L},
title = {{A practical guide to methods of parentage analysis}},
journal = {Molecular Ecology Resources},
volume = {10},
number = {1},
pages = {6--30}
}
@article{Lifjeld:1992ut,
author = {Lifjeld, JT and Robertson, RJ},
title = {{FEMALE CONTROL OF EXTRA-PAIR FERTILIZATION IN TREE SWALLOWS}},
journal = {Behavioral Ecology and Sociobiology},
year = {1992},
volume = {31},
number = {2},
pages = {89--96}
}
@article{Jeandroz:2008ec,
author = {Jeandroz, Sylvain and Murat, Claude and Wang, Yongjin and Bonfante, Paola and Tacon, Fran{\c c}ois Le},
title = {{Molecular phylogeny and historical biogeography of the genus Tuber, the {\textquoteleft}true truffles{\textquoteright}}},
journal = {Journal of Biogeography},
year = {2008},
volume = {35},
number = {5},
pages = {815--829},
month = may
}
@article{Alper:2008cy,
author = {Alper, S and Laws, R and Lackford, B and Boyd, W A and Dunlap, P and Freedman, J H and Schwartz, D A},
title = {{Identification of innate immunity genes and pathways using a comparative genomics approach}},
journal = {PNAS},
year = {2008},
volume = {105},
number = {19},
pages = {7016--7021},
month = may
}
@incollection{Hoebe:2006io,
author = {Hoebe, Kasper and Jiang, Zhengfan and Tabeta, Koichi and Du, Xin and Georgel, Philippe and Crozat, Karine and Beutler, Bruce},
title = {{Genetic Analysis of Innate Immunity}},
year = {2006},
pages = {175--226},
publisher = {Elsevier}
}
@article{Stinchcombe:2008ca,
author = {Stinchcombe, J R and Stinchcombe, J R and Hoekstra, H E},
title = {{Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits.}},
journal = {Heredity},
year = {2008},
volume = {100},
number = {2},
pages = {158--170},
month = feb
}
@article{Springer:2011ks,
author = {Springer, Stevan A and CRESPI, BERNARD J and CRESPI, BERNARD J and Swanson, Willie J},
title = {{Beyond the phenotypic gambit: molecular behavioural ecology and the evolution of genetic architecture.}},
journal = {Molecular Ecology},
year = {2011},
month = apr
}
@article{Fossoy:2006kk,
author = {Fossoy, Frode and Johnsen, Arild and Lifjeld, Jan T},
title = {{Evidence of obligate female promiscuity in a socially monogamous passerine}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {60},
number = {2},
pages = {255--259},
month = mar
}
@article{Cassone:2008dc,
author = {Cassone, Bryan J and Mouline, Karine and Hahn, Matthew W and White, Bradley J and Pombi, Marco and Simard, Frederic and Costantini, Carlo and Besansky, Nora J},
title = {{Differential gene expression in incipient species of Anopheles gambiae}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {10},
pages = {2491--2504},
month = apr
}
@article{Landry:2001vr,
author = {Landry, Christian and Landry, Christian and Bernatchez, Louis},
title = {{Comparative analysis of population structure across environments and geographical scales at major histocompatibility complex and microsatellite loci in Atlantic salmon (\emph{Salmo salar})}},
journal = {Molecular Ecology},
year = {2001},
volume = {10},
number = {10},
pages = {2525--2539}
}
@article{Silva:2009ju,
author = {Silva, M{\'o}nica C and Silva, M{\'o}nica C and Edwards, Scott V},
title = {{Structure and Evolution of a New Avian MHC Class II B Gene in a Sub-Antarctic Seabird, the Thin-Billed Prion (Procellariiformes: Pachyptila belcheri)}},
journal = {Journal of Molecular Evolution},
year = {2009},
volume = {68},
number = {3},
pages = {279--291},
month = feb
}
@article{HAMILTON:1963tc,
author = {HAMILTON, WD},
title = {{Evolution of Altruistic Behavior}},
journal = {The American Naturalist},
year = {1963},
volume = {97},
number = {896},
pages = {354--{\&}}
}
@article{Bresler:2013wd,
author = {Bresler, Guy and Bresler, Ma'ayan and Tse, David},
title = {{Optimal Assembly for High Throughput Shotgun Sequencing}},
journal = {arXiv.org},
year = {2013},
eprint = {1301.0068v3},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = jan
}
@article{Birkhead:1996tv,
author = {Birkhead, TR},
title = {{Female control: Sexual selection by cryptic female choice - Eberhard,WG}},
journal = {Nature},
year = {1996},
volume = {382},
number = {6594},
pages = {772--772}
}
@article{Hoberman:2009hz,
author = {Hoberman, R and Dias, J and Ge, B and Harmsen, E and Mayhew, M and Verlaan, D J and Kwan, T and Dewar, K and Blanchette, M and Pastinen, T},
title = {{A probabilistic approach for SNP discovery in high-throughput human resequencing data}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {9},
pages = {1542--1552},
month = sep
}
@article{Anonymous:zQiC-DrG,
title = {{980924944}},
year = {2006},
pages = {1--103},
month = aug
}
@article{Richman:2003tc,
author = {Richman, AD and Herrera, LG and Nash, D},
title = {{Evolution of MHC class II E beta diversity within the genus \textit{Peromyscus}}},
journal = {Genetics},
year = {2003},
volume = {164},
number = {1},
pages = {289--297}
}
@article{Wong:2011hg,
author = {Wong, E S W and Wong, E S W and Papenfuss, A T and Papenfuss, A T and Whittington, C M and Whittington, C M and Warren, W C and Warren, W C and Belov, K},
title = {{A Limited Role for Gene Duplications in the Evolution of Platypus Venom}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {29},
number = {1},
pages = {167--177},
month = dec
}
@article{Parmesan:2003ce,
author = {Parmesan, Camille and Yohe, Gary},
title = {{A globally coherent fingerprint of climate change impacts across natural systems}},
journal = {Nature},
year = {2003},
volume = {421},
number = {6918},
pages = {37--42},
month = jan
}
@article{Neff:2008fva,
author = {Neff, Bryan D and Pitcher, Trevor E and Ramnarine, Indar W},
title = {{Inter-population variation in multiple paternity and reproductive skew in the guppy}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {12},
pages = {2975--2984},
month = jun
}
@article{Zhang:2013jo,
author = {Zhang, Guofan and Fang, Xiaodong and Guo, Ximing and Li, Li and Luo, Ruibang and Xu, Fei and Yang, Pengcheng and Zhang, Linlin and Wang, Xiaotong and Qi, Haigang and Xiong, Zhiqiang and Que, Huayong and Xie, Yinlong and Holland, Peter W H and Paps, Jordi and Zhu, Yabing and Wu, Fucun and Chen, Yuanxin and Wang, Jiafeng and Peng, Chunfang and Meng, Jie and Yang, Lan and Liu, Jun and Wen, Bo and Zhang, Na and Huang, Zhiyong and Zhu, Qihui and Feng, Yue and Mount, andrew and Hedgecock, Dennis and Xu, Zhe and Liu, Yunjie and Domazet-Lo{\v s}o, Tomislav and Du, Yishuai and Sun, Xiaoqing and Zhang, Shoudu and Liu, Binghang and Cheng, Peizhou and Jiang, Xuanting and Li, Juan and Fan, Dingding and Wang, Wei and Fu, Wenjing and Wang, Tong and Wang, Bo and Zhang, Jibiao and Peng, Zhiyu and Li, Yingxiang and Li, Na and Wang, Jinpeng and Chen, Maoshan and He, Yan and Tan, Fengji and Song, Xiaorui and Zheng, Qiumei and Huang, Ronglian and Yang, Hailong and Du, Xuedi and Chen, Li and Yang, Mei and Gaffney, Patrick M and Wang, Shan and Luo, Longhai and She, Zhicai and Ming, Yao and Huang, Wen and Zhang, Shu and Huang, Baoyu and Zhang, Yong and Qu, Tao and Ni, Peixiang and Miao, Guoying and Wang, Junyi and Wang, Qiang and Steinberg, Christian E W and Wang, Haiyan and Li, Ning and Qian, Lumin and Zhang, Guojie and Li, Yingrui and Yang, Huanming and Liu, Xiao and Wang, Jian and Yin, Ye and Wang, Jun},
title = {{The oyster genome reveals stress adaptation and complexity of shell formation.}},
journal = {Nature},
year = {2012},
volume = {490},
number = {7418},
pages = {49--54},
month = oct
}
@article{Eady:2001ud,
author = {Eady, PE},
title = {{Postcopulatory, prezygotic reproductive isolation}},
journal = {Journal of Zoology},
year = {2001},
volume = {253},
pages = {47--52}
}
@article{Ivy:2007jz,
journal = {Journal of Evolutionary Biology},
year = {2007},
volume = {20},
number = {2},
month = mar
}
@article{Keightley:2012ez,
author = {Keightley, P D and Keightley, P D},
title = {{Rates and Fitness Consequences of New Mutations in Humans}},
journal = {Genetics},
year = {2012},
volume = {190},
number = {2},
pages = {295--304},
month = feb
}
@article{HilleRisLambers:2012jv,
author = {HilleRisLambers, J and HilleRisLambers, J and Adler, P B and Harpole, W S and Levine, J M and Levine, J M and Mayfield, M M and Mayfield, M M},
title = {{Rethinking Community Assembly through the Lens of Coexistence Theory}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2012},
volume = {43},
number = {1},
pages = {227--248},
month = dec
}
@article{Gangestad:2008bu,
author = {Gangestad, S W and THORNHILL, R},
title = {{Human oestrus}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1638},
pages = {991--1000},
month = may
}
@article{Smith:2012hs,
author = {Smith, J J and Smith, J J and Sumiyama, K and Sumiyama, K and Amemiya, C T and Amemiya, C T},
title = {{A Living Fossil in the Genome of a Living Fossil: Harbinger Transposons in the Coelacanth Genome}},
journal = {Molecular Biology and Evolution},
year = {2012},
volume = {29},
number = {3},
pages = {985--993},
month = feb
}
@article{Schatz:2010if,
author = {Schatz, M C and Delcher, A L and Salzberg, S L},
title = {{Assembly of large genomes using second-generation sequencing}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {9},
pages = {1165--1173},
month = sep
}
@article{Meyer:2009jj,
author = {Meyer, Eli and Aglyamova, Galina V and Wang, Shi and Buchanan-Carter, Jade and Abrego, David and Colbourne, John K and Willis, Bette L and Matz, Mikhail V},
title = {{Sequencing and \textit{de novo} analysis of a coral larval transcriptome using 454 GSFlx}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {219}
}
@article{Wolf:2009hp,
author = {Wolf, J B and Hager, R},
title = {{Selective abortion and the evolution of genomic imprinting}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {12},
pages = {2519--2523},
month = dec
}
@article{Xu:2011hz,
author = {Xu, S and Li, S and Yang, Y and Tan, J and Lou, H and Jin, W and Yang, L and Pan, X and Wang, J and Shen, Y and Wu, B and Wang, H and Jin, L},
title = {{A Genome-Wide Search for Signals of High-Altitude Adaptation in Tibetans}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {2},
pages = {1003--1011},
month = jan
}
@article{Rosengrave:2009et,
author = {Rosengrave, Patrice and Taylor, Harry and Montgomerie, Robert and Metcalf, Victoria and McBride, Katherine and Gemmell, Neil J},
title = {{Chemical composition of seminal and ovarian fluids of chinook salmon (Oncorhynchus tshawytscha) and their effects on sperm motility traits}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2009},
volume = {152},
number = {1},
pages = {123--129},
month = jan
}
@article{Altieri:1986tc,
author = {Altieri, Miguel A and Schmidt, Linda L},
title = {{The dynamics of colonizing arthropod communities at the interface of abandoned, organic and commercial apple orchards and adjacent woodland habitats}},
journal = {Agriculture, Ecosystems {\&} Environment},
year = {1986},
volume = {16},
number = {1},
pages = {29--43}
}
@article{Zhu:2007tv,
author = {Zhu, Mengjin and Zhao, Shuhong},
title = {{Candidate gene identification approach: Progress and challenges}},
journal = {International Journal of Biological Sciences},
year = {2007},
volume = {3},
number = {7},
pages = {420--427}
}
@article{Ubeda:2010iv,
author = {Ubeda, Francisco and Gardner, andy},
title = {{A MODEL FOR GENOMIC IMPRINTING IN THE SOCIAL BRAIN: JUVENILES}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {9},
pages = {2587--2600},
month = sep
}
@article{Miller:1988vb,
author = {Miller, SA and Miller, SA and Dykes, DD and Dykes, DD and Polesky, HF and Polesky, HF},
title = {{A simple salting out procedure for extracting DNA from human nucleated cells}},
journal = {Nucleic Acids Research},
year = {1988},
volume = {16},
number = {3},
pages = {1215--1215}
}
@article{Fornel:2010fy,
author = {Fornel, Rodrigo and Cordeiro-Estrela, Pedro and de Freitas, Thales Renato O},
title = {{Skull shape and size variation in \textit{Ctenomys} minutus (Rodentia: Ctenomyidae) in geographical, chromosomal polymorphism, and environmental contexts}},
journal = {Biological Journal of The Linnean Society},
year = {2010},
volume = {101},
number = {3},
pages = {705--720},
month = sep
}
@article{Charpentier:2005he,
author = {Charpentier, M},
title = {{Genetic diversity and reproductive success in mandrills (Mandrillus sphinx)}},
journal = {PNAS},
year = {2005},
volume = {102},
number = {46},
pages = {16723--16728},
month = oct
}
@article{Bradley:2009dc,
author = {Bradley, Robert K and Roberts, Adam and Smoot, Michael and Juvekar, Sudeep and Do, Jaeyoung and Dewey, Colin and Holmes, Ian and Pachter, Lior},
title = {{Fast Statistical Alignment}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {5},
pages = {e1000392},
month = may
}
@article{Riesgo:2011do,
author = {Riesgo, Ana and Perez-Porro, Alicia R and Carmona, Susana and Leys, Sally P and Giribet, Gonzalo},
title = {{Optimization of preservation and storage time of sponge tissues to obtain quality mRNA for next-generation sequencing.}},
journal = {Molecular Ecology Resources},
year = {2012},
volume = {12},
number = {2},
pages = {312--322},
month = mar
}
@article{Weese:2009iw,
author = {Weese, D and Emde, A-K and Rausch, T and Doring, A and Reinert, K},
title = {{RazerS--fast read mapping with sensitivity control}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {9},
pages = {1646--1654},
month = sep
}
@article{Dagg:2006ug,
author = {Dagg, JL},
title = {{Could sex be maintained through harmful males?}},
journal = {Oikos},
year = {2006},
volume = {112},
number = {1},
pages = {232--235}
}
@article{Casci:2011fw,
author = {Casci, Tanita},
title = {{Phylogenomics: Improving our family tree.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {5},
pages = {298--299},
month = may
}
@article{Barrett:2012ju,
author = {Barrett, Craig F and Davis, Jerrold I},
title = {{The plastid genome of the mycoheterotrophic \textit{Corallorhiza striata} (Orchidaceae) is in the relatively early stages of degradation.}},
journal = {American Journal of Botany},
year = {2012},
volume = {99},
number = {9},
pages = {1513--1523},
month = sep
}
@article{Bedford:2009fy,
author = {Bedford, T and Hartl, D L},
title = {{Optimization of gene expression by natural selection}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {4},
pages = {1133--1138},
month = jan
}
@article{Sung:2012kp,
author = {Sung, Way and Ackerman, Matthew S and Miller, Samuel F and Doak, Thomas G and Lynch, Michael},
title = {{Drift-barrier hypothesis and mutation-rate evolution.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = oct
}
@article{Schneider:2009en,
author = {Schneider, Adrian and Schneider, Adrian and Souvorov, Alexander and Souvorov, Alexander and Sabath, Niv and Sabath, Niv and Landan, Giddy and Landan, Giddy and Gonnet, Gaston H. and Gonnet, Gaston H. and Graur, Dan},
title = {{Estimates of Positive Darwinian Selection Are Inflated by Errors in Sequencing, Annotation, and Alignment}},
journal = {Genome Biology and Evolution},
year = {2009},
volume = {1},
pages = {114--118}
}
@article{Rocchetti:2010ik,
author = {Rocchetti, Talita T and Marconi, Camila and Rall, Vera L M and Borges, Vera T M and Corrente, Jos{\'e} E and da Silva, M{\'a}rcia G},
title = {{Group B streptococci colonization in pregnant women: risk factors and evaluation of the vaginal flora}},
journal = {Archives of Gynecology and Obstetrics},
year = {2010},
volume = {283},
number = {4},
pages = {717--721},
month = mar
}
@article{Jones:2001tl,
author = {Jones, AG and Walker, D and Walker, D and Kvarnemo, C and Kvarnemo, C and Lindstrom, K and Lindstrom, K and Avise, JC},
title = {{How cuckoldry can decrease the opportunity for sexual selection: Data and theory from a genetic parentage analysis of the sand goby, Pomatoschistus minutus}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2001},
volume = {98},
number = {16},
pages = {9151--9156}
}
@article{Gardner:2004wp,
author = {Gardner, JL and Magrath, RD and Olsen, PD},
title = {{Speckled warblers break cooperative rules: absence of helping in a group-living member of the Pardalotidae}},
journal = {Animal Behaviour},
year = {2004},
volume = {67},
pages = {719--728}
}
@article{Takahata:1990un,
author = {Takahata, N and NEI, M},
title = {{Allelic Genealogy Under Overdominant and Frequency-Dependent Selection and Polymorphism of Major Histocompatibility Complex Loci}},
journal = {Genetics},
year = {1990},
volume = {124},
number = {4},
pages = {967--978}
}
@article{Brown:2000wd,
author = {Brown, JH and Fox, BJ and Fox, BJ and Kelt, DA and Kelt, DA},
title = {{Assembly rules: Desert rodent communities are structured at scales from local to continental}},
journal = {The American Naturalist},
year = {2000},
volume = {156},
number = {3},
pages = {314--321}
}
@article{Gillmore:2003tb,
author = {Gillmore, Mary Rogers and Stielstra, Sorrel and Huang, Bu and Baker, Sharon A and Beadnell, Blair and Morrison, Diane M},
title = {{Heterosexually active men's beliefs about methods for preventing sexually transmitted diseases}},
journal = {Perspectives On Sexual and Reproductive Health},
year = {2003},
volume = {35},
number = {3},
pages = {121--129}
}
@article{Excoffier:2010cc,
author = {Excoffier, Laurent and Lischer, Heidi E L},
title = {{Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {3},
pages = {564--567},
month = may
}
@article{Lombardo:1996tj,
author = {Lombardo, MP and Thorpe, PA and Cichewicz, R and Henshaw, M and Millard, C and Steen, C and Zeller, TK},
title = {{Communities of cloacal bacteria in Tree Swallow families}},
journal = {The Condor},
year = {1996},
volume = {98},
number = {1},
pages = {167--172}
}
@article{Johansson:2009ko,
author = {Johansson, M L},
title = {{Next Generation Sequencing in Nonmodel Organisms: Has the Future Arrived?}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {6},
pages = {807--807},
month = nov
}
@article{Minoche:2011fl,
author = {Minoche, andr{\'e} E and Minoche, andr{\'e} E and Dohm, Juliane C and Himmelbauer, Heinz},
title = {{Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and Genome Analyzer systems}},
journal = {Genome Biology},
year = {2011},
volume = {12},
number = {11},
pages = {R112}
}
@article{Lin:2011jv,
author = {Lin, K and Li, H and Schlotterer, C and Futschik, A},
title = {{Distinguishing Positive Selection From Neutral Evolution: Boosting the Performance of Summary Statistics}},
journal = {Genetics},
year = {2011},
volume = {187},
number = {1},
pages = {229--244},
month = jan
}
@article{Fan:2013dl,
author = {Fan, Ruiwen and Fan, Ruiwen and Xie, Jianshan and Xie, Jianshan and Bai, Junming and Bai, Junming and Wang, Haidong and Wang, Haidong and Tian, Xue and Tian, Xue and Bai, Rui and Bai, Rui and Jia, Xiaoyun and Jia, Xiaoyun and Yang, Lei and Yang, Lei and Song, Yunfei and Song, Yunfei and Herrid, Muren and Herrid, Muren and Gao, Wenjun and Gao, Wenjun and He, Xiaoyan and He, Xiaoyan and Yao, Jianbo and Yao, Jianbo and Smith, George W and Smith, George W and Dong, Changsheng and Dong, Changsheng},
title = {{Skin transcriptome profiles associated with coat color in sheep}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {389}
}
@article{Bonduriansky:2009il,
author = {Bonduriansky, Russell and Chenoweth, Stephen F},
title = {{Intralocus sexual conflict}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {5},
pages = {280--288},
month = may,
annote = {IRSC: Coat color for instance, or body size.
can result in suboptimal phenotypes for both sexes.
would eff. pop. size male of female determine which party "won" in IRSC
could be then Rfm is negative, or when Rfm is +, but direction of selection is different.
reduce constraints on the evolution of more optimal sexual dimorphism..
}
}
@article{Heled:2008et,
author = {Heled, Joseph and Drummond, Alexei J},
title = {{Bayesian inference of population size history from multiple loci}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {289}
}
@article{Wood:2009we,
author = {Wood, Dustin and Yanai, Ruth and Allen, Douglas and Wilmot, Sandra},
title = {{Sugar Maple Decline after Defoliation by Forest Tent Caterpillar}},
journal = {Journal of Forestry},
year = {2009},
volume = {107},
number = {1},
pages = {29--37}
}
@article{Kiesecker:1999vv,
author = {Kiesecker, JM and Skelly, DK and Beard, KH and Preisser, E},
title = {{Behavioral reduction of infection risk}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1999},
volume = {96},
number = {16},
pages = {9165--9168}
}
@article{Jiang:2011cu,
author = {Jiang, Yanliang and Jiang, Yanliang and Lu, Jianguo and Lu, Jianguo and Peatman, Eric and Peatman, Eric and Kucuktas, Huseyin and Kucuktas, Huseyin and Liu, Shikai and Liu, Shikai and Wang, Shaolin and Wang, Shaolin and Sun, Fanyue and Sun, Fanyue and Liu, Zhanjiang and Liu, Zhanjiang},
title = {{A Pilot Study for Channel Catfish Whole Genome Sequencing and \textit{de novo} Assembly}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {629}
}
@article{Bangert:2004kh,
author = {Bangert, RK and Bangert, RK and Slobodchikoff, CN and Slobodchikoff, CN},
title = {{Prairie dog engineering indirectly affects beetle movement behavior}},
journal = {Journal of Arid Environments},
year = {2004},
volume = {56},
number = {1},
pages = {83--94}
}
@article{Bos:2009dj,
author = {Bos, David H and Williams, Rod N and Gopurenko, David and Bulut, Zafer and Dewoody, J andrew},
title = {{Condition-dependent mate choice and a reproductive disadvantage for MHC-divergent male tiger salamanders}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {15},
pages = {3307--3315},
month = aug
}
@article{Anonymous:GB5Rch2k,
title = {{pnas.201121327SI}}
}
@article{Shima:2004ii,
author = {Shima, J E},
title = {{The Murine Testicular Transcriptome: Characterizing Gene Expression in the Testis During the Progression of Spermatogenesis}},
journal = {Biology of Reproduction},
year = {2004},
volume = {71},
number = {1},
pages = {319--330},
month = jul
}
@article{Mangel:2007dv,
author = {Mangel, Marc and Kindsvater, Holly K and Bonsall, Michael B},
title = {{EVOLUTIONARY ANALYSIS OF LIFE SPAN, COMPETITION, AND ADAPTIVE RADIATION, MOTIVATED BY THE PACIFIC ROCKFISHES (SEBASTES)}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {5},
pages = {1208--1224},
month = may
}
@article{Grizante:2010jg,
author = {Grizante, M B and Navas, C A and GARLAND, Jr, T and Kohlsdorf, T},
title = {{Morphological evolution in Tropidurinae squamates: an integrated view along a continuum of ecological settings}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {1},
pages = {98--111},
month = jan
}
@article{Pilch:2006ki,
author = {Pilch, Bartosz and Mann, Matthias},
title = {{Large-scale and high-confidence proteomic analysis of human seminal plasma.}},
journal = {Genome Biology},
year = {2006},
volume = {7},
number = {5},
pages = {R40}
}
@article{Walther:2002fh,
author = {Walther, Gian-Reto and Post, Eric and Convey, Peter and Menzel, Annette and Parmesan, Camille and Beebee, Trevor J C and Fromentin, Jean-Marc and Hoegh-Guldberg, Ove and Bairlein, Franz},
title = {{Ecological responses to recent climate change}},
journal = {Nature},
year = {2002},
volume = {416},
number = {6879},
pages = {389--395},
month = mar
}
@inproceedings{Lee:2012cz,
author = {Lee, H and Popodi, E and Tang, H},
title = {{Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing}},
booktitle = {Proceedings of the {\ldots}},
year = {2012}
}
@article{Anonymous:4Qo8Eura,
title = {{Fems Microbiol Rev 1993 WOOLDRIDGE}},
year = {2002},
pages = {24},
month = aug
}
@article{Yang:2005fa,
author = {Yang, Hongmei and Li, Xiaoming and Stanton, Bonita and Liu, Hongjie and Liu, Hui and Wang, Ning and Fang, Xiaoyi and Lin, Danhua and Chen, Xinguang},
title = {{Heterosexual Transmission of HIV in China: A Systematic Review of Behavioral Studies in the Past Two Decades}},
journal = {Sexually Transmitted Diseases},
year = {2005},
volume = {32},
number = {5},
pages = {270--280},
month = may
}
@article{Kotaki:2010dw,
author = {Kotaki, Manabu and Kurabayashi, Atsushi and Matsui, Masafumi and Kuramoto, Mitsuru and Djong, Tjong Hon and Sumida, Masayuki},
title = {{Molecular Phylogeny of the Diversified Frogs of Genus Fejervarya(Anura: Dicroglossidae)}},
journal = {Zoological Science},
year = {2010},
volume = {27},
number = {5},
pages = {386--395},
month = may
}
@article{Beauchamp:1988tj,
author = {Beauchamp, G K and Yamazaki, K and Bard, J and Boyse, E A},
title = {{Preweaning experience in the control of mating preferences by genes in the major histocompatibility complex of the mouse.}},
journal = {Behavior genetics},
year = {1988},
volume = {18},
number = {4},
pages = {537--547},
month = jul
}
@article{Dreiss:2005hn,
author = {Dreiss, A},
title = {{Sex ratio and male sexual characters in a population of blue tits, Parus caeruleus}},
journal = {Behavioral Ecology},
year = {2005},
volume = {17},
number = {1},
pages = {13--19},
month = oct
}
@article{THOMAS:1990ui,
author = {THOMAS, WK and Paabo, S and VILLABLANCA, FX and WILSON, AC},
title = {{SPATIAL AND TEMPORAL CONTINUITY OF KANGAROO RAT-POPULATIONS SHOWN BY SEQUENCING MITOCHONDRIAL-DNA FROM MUSEUM SPECIMENS}},
journal = {Journal of Molecular Evolution},
year = {1990},
volume = {31},
number = {2},
pages = {101--112}
}
@article{Matocq:2004ho,
author = {Matocq, M D},
title = {{Reproductive success and effective population size in woodrats (Neotoma macrotis)}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {6},
pages = {1635--1642},
month = apr
}
@article{Jones:2012kk,
author = {Jones, Christopher M and Jones, Christopher M and Liyanapathirana, Milindu and Liyanapathirana, Milindu and Agossa, Fiacre R and Agossa, Fiacre R and Weetman, David and Ranson, Hilary and Donnelly, Martin James and Donnelly, Martin James and Wilding, Craig S},
title = {{Footprints of positive selection associated with a mutation (N1575Y) in the voltage-gated sodium channel of Anopheles gambiae.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {17},
pages = {6614--6619},
month = apr
}
@article{Nagalakshmi:2010kj,
author = {Nagalakshmi, Ugrappa and Waern, Karl and Waern, Karl and Snyder, Michael},
title = {{RNA-Seq: a method for comprehensive transcriptome analysis.}},
journal = {Current protocols in molecular biology / edited by Frederick M. Ausubel ... [et al.]},
year = {2010},
volume = {Chapter 4},
pages = {Unit 4.11.1--13},
month = jan
}
@article{CloudsleyThompson:2001up,
author = {Cloudsley-Thompson, JL and Cloudsley-Thompson, JL},
title = {{Thermal and water relations of desert beetles}},
journal = {Die Naturwissenschaften},
year = {2001},
volume = {88},
number = {11},
pages = {447--460}
}
@article{Chirhart:2000vu,
author = {Chirhart, Scott E and Honeycutt, Rodney L and Greenbaum, Ira F},
title = {{Microsatellite markers for the deer mouse \emph{\textit{Peromyscus} \textit{maniculatus}}}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {10},
pages = {1669--1671}
}
@article{Kappeler:2008fk,
author = {Kappeler, Peter M and Sch{\"a}ffler, Livia},
title = {{The lemur syndrome unresolved: extreme male reproductive skew in sifakas (Propithecus verreauxi), a sexually monomorphic primate with female dominance}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {6},
pages = {1007--1015},
month = dec
}
@article{Karl:2012jr,
author = {Karl, Stephen A and TOONEN, R J and TOONEN, R J and Grant, W S and Grant, W S and BOWEN, B W and BOWEN, B W},
title = {{Common misconceptions in molecular ecology: echoes of the modern synthesis.}},
journal = {Molecular Ecology},
year = {2012},
month = may
}
@article{Cagliani:2012im,
author = {Cagliani, Rachele and Fumagalli, Matteo and Guerini, Franca R and Guerini, Franca R and Riva, Stefania and Galimberti, Daniela and Galimberti, Daniela and Comi, Giacomo P and Agliardi, Cristina and Agliardi, Cristina and Scarpini, Elio and Scarpini, Elio and Pozzoli, Uberto and Forni, Diego and Forni, Diego and Caputo, Domenico and Caputo, Domenico and Asselta, Rosanna and Asselta, Rosanna and Biasin, Mara and Biasin, Mara and Paraboschi, Elvezia M and Paraboschi, Elvezia M and Bresolin, Nereo and Clerici, Mario and Clerici, Mario and Sironi, Manuela},
title = {{Identification of a new susceptibility variant for multiple sclerosis in OAS1 by population genetics analysis}},
journal = {Human Genetics},
year = {2012},
volume = {131},
number = {1},
pages = {87--97}
}
@article{Foret:2012jf,
author = {Foret, Sylvain and Kucharski, Robert and Pellegrini, Matteo and Pellegrini, Matteo and Feng, Suhua and Feng, Suhua and Jacobsen, Steven E and Jacobsen, Steven E and Robinson, Gene E and Maleszka, Ryszard},
title = {{DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {13},
pages = {4968--4973},
month = mar
}
@article{Kempenaers:1995wv,
author = {Kempenaers, B and Verheyen, G and DHONDT, AA},
title = {{Mate Guarding and Copulation Behavior in Monogamous and Polygynous Blue Tits - Do Males Follow a Best-of-a-Bad-Job Strategy}},
journal = {Behavioral Ecology and Sociobiology},
year = {1995},
volume = {36},
number = {1},
pages = {33--42}
}
@article{Schulz:2012je,
author = {Schulz, Marcel H and Zerbino, Daniel R and Vingron, Martin and Birney, Ewan},
title = {{Oases: robust \textit{de novo} RNA-seq assembly across the dynamic range of expression levels.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {8},
pages = {1086--1092},
month = apr
}
@techreport{Li:2014er,
author = {Li, B and Fillmore, N and Bai, Y and Collins, M and Thomson, J A and Stewart, R and Dewey, C},
title = {{Evaluation of \textit{de novo} transcriptome assemblies from RNA-Seq data}},
year = {2014},
month = jun
}
@article{Marioni:2008bg,
author = {Marioni, John C and Mason, Christopher E and Mane, Shrikant M and Stephens, Matthew and Gilad, Yoav},
title = {{RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays}},
journal = {Genome Research},
year = {2008},
volume = {18},
number = {9},
pages = {1509--1517}
}
@article{GANGOSO:2012ey,
author = {GANGOSO, L and Alcaide, M and GRANDE, J M and MU{\~{N}}OZ, J and TALBOT, S L and SONSTHAGEN, S A and SAGE, G K and FIGUEROLA, J},
title = {{Colonizing the world in spite of reduced MHC variation}},
journal = {Journal of Evolutionary Biology},
year = {2012},
volume = {25},
number = {7},
pages = {1438--1447},
month = jun
}
@article{Nowak:2008dk,
author = {Nowak, M A and Ohtsuki, H},
title = {{Prevolutionary dynamics and the origin of evolution}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {39},
pages = {14924--14927},
month = sep
}
@article{Kelley:2010kg,
author = {Kelley, David R and Schatz, Michael C and Salzberg, Steven L},
title = {{Quake: quality-aware detection and correction of sequencing errors}},
journal = {Genome Biology},
year = {2010},
volume = {11},
number = {R116},
pages = {1--13}
}
@article{Raihani:2012fl,
author = {Raihani, N J and Raihani, N J and Grutter, A S and Grutter, A S and Bshary, R and Bshary, R},
title = {{Female cleaner fish cooperate more with unfamiliar males}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1737},
pages = {2479--2486},
month = may
}
@article{Hearn:2013hq,
author = {Hearn, Jack and Stone, Graham N and Bunnefeld, Lynsey and Nicholls, James A and Barton, Nicholas H and Lohse, Konrad},
title = {{Likelihood-based inference of population history from low-coverage \textit{de novo}genome assemblies}},
journal = {Molecular Ecology},
year = {2013},
volume = {23},
number = {1},
pages = {198--211},
month = dec
}
@article{Nalepa:2007is,
author = {Nalepa, Christine A and Weir, Alexander},
title = {{Infection of Harmonia axyridis (Coleoptera: Coccinellidae) by Hesperomyces virescens (Ascomycetes: Laboulbeniales): Role of mating status and aggregation behavior}},
journal = {Journal of Invertebrate Pathology},
year = {2007},
volume = {94},
number = {3},
pages = {196--203},
month = mar
}
@article{Horn:2010cy,
author = {Horn, T and Robertson, B C and Gemmell, N J},
title = {{The use of telomere length in ecology and evolutionary biology}},
journal = {Heredity},
year = {2010},
volume = {105},
number = {6},
pages = {497--506},
month = aug
}
@article{deOliveira:2006gy,
author = {de Oliveira, Larissa Rosa and Arias-Schreiber, Milena and Meyer, Diogo and Morgante, Joao S},
title = {{Effective population size in a bottlenecked fur seal population}},
journal = {Biological Conservation},
year = {2006},
volume = {131},
number = {4},
pages = {505--509},
month = sep
}
@article{Flores:2011wr,
author = {Flores, GE and Bates, ST and Knights, D and Lauber, CL},
title = {{Microbial Biogeography of Public Restroom Surfaces}},
journal = {PLOS ONE},
year = {2011}
}
@article{Meyer:1999wf,
author = {Meyer, S and Weiss, G and von Haeseler, A},
title = {{Pattern of nucleotide substitution and rate heterogeneity in the hypervariable regions I and II of human mtDNA}},
journal = {Genetics},
year = {1999},
volume = {152},
number = {3},
pages = {1103--1110}
}
@article{Chiu:2006gk,
author = {Chiu, Kuo and Wong, Chee-Hong and Chen, Qiongyu and Ariyaratne, Pramila and Ooi, Hong and Wei, Chia-Lin and Sung, Wing-Kin and Ruan, Yijun},
journal = {BMC Bioinformatics},
year = {2006},
volume = {7},
number = {1},
pages = {390}
}
@article{Szentgyoergyi:2008ko,
author = {Szentgy{\"o}rgyi, H and Kapusta, J and Marchlewska-Koj, A},
title = {{Ultrasonic calls of bank vole pups isolated and exposed to cold or to nest odor}},
journal = {Physiology {\&} Behavior},
year = {2008},
volume = {93},
number = {1-2},
pages = {296--303},
month = jan
}
@article{Keime:2007hs,
author = {Keime, C{\'e}line and S{\'e}mon, Marie and Mouchiroud, Dominique and Duret, Laurent and Gandrillon, Olivier},
title = {{Unexpected observations after mapping LongSAGE tags to the human genome}},
journal = {BMC Bioinformatics},
year = {2007},
volume = {8},
number = {1},
pages = {154}
}
@article{Jennions:2004vo,
author = {Jennions, MD and Hunt, J and Graham, R and Brooks, R},
title = {{No evidence for inbreeding avoidance through postcopulatory mechanisms in the black field cricket, Teleogryllus commodus}},
journal = {Evolution},
year = {2004},
volume = {58},
number = {11},
pages = {2472--2477}
}
@article{BURLEY:1988ug,
author = {BURLEY, N},
title = {{WILD ZEBRA FINCHES HAVE BAND-COLOR PREFERENCES}},
journal = {Animal Behaviour},
year = {1988},
volume = {36},
pages = {1235--1237}
}
@article{Zamudio:2000up,
author = {Zamudio, KR and Sinervo, E},
title = {{Polygyny, mate-guarding, and posthumous fertilization as alternative male mating strategies}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {26},
pages = {14427--14432}
}
@article{Shapiro:2013ce,
author = {Shapiro, M D and Shapiro, M D and Kronenberg, Z and Kronenberg, Z and Li, C and Li, C and Domyan, E T and Domyan, E T and Pan, H and Pan, H and Campbell, M and Campbell, M and Tan, H and Tan, H and Huff, C D and Huff, C D and Hu, H and Hu, H and Vickrey, A I and Vickrey, A I and Nielsen, S C A and Nielsen, S C A and Stringham, S A and Stringham, S A and Hu, H and Willerslev, E and Willerslev, E and Gilbert, M T P and Yandell, M and Yandell, M and Zhang, G and Zhang, G and Wang, J},
title = {{Genomic Diversity and Evolution of the Head Crest in the Rock Pigeon}},
journal = {Science (New York, NY)},
year = {2013},
volume = {339},
number = {6123},
pages = {1063--1067},
month = feb
}
@article{Crottini:2007dx,
author = {Crottini, Angelica and andreone, Franco and Kosuch, Joachim and Borkin, Leo J and Litvinchuk, Spartak N and Eggert, Christophe and Veith, Michael},
title = {{Fossorial but widespread: the phylogeography of the common spadefoot toad (Pelobates fuscus), and the role of the Po Valley as a major source of genetic variability}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {13},
pages = {2734--2754},
month = jul
}
@article{Sultan:2008jh,
author = {Sultan, M and Schulz, M H and Richard, H and Magen, A and Klingenhoff, A and Scherf, M and Seifert, M and Borodina, T and Soldatov, A and Parkhomchuk, D and Schmidt, D and O'Keeffe, S and Haas, S and Vingron, M and Lehrach, H and Yaspo, M L},
title = {{A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome}},
journal = {Science (New York, NY)},
year = {2008},
volume = {321},
number = {5891},
pages = {956--960},
month = aug
}
@article{Pearson:2009jo,
author = {Pearson, Talima and Okinaka, Richard T and Foster, Jeffrey T and Keim, Paul},
title = {{Phylogenetic understanding of clonal populations in an era of whole genome sequencing}},
journal = {Infection, Genetics and Evolution},
year = {2009},
volume = {9},
number = {5},
pages = {1010--1019},
month = sep
}
@article{Quinn:1987vk,
author = {Quinn, TW and Quinn, J L and Cooke, F and White, BN},
title = {{DNA marker analysis detects multiple maternity and paternity in single broods of the lesser snow goose}},
journal = {Nature},
year = {1987},
volume = {326},
number = {6111},
pages = {392--394}
}
@article{Ostner:2008gn,
author = {Ostner, J and Nunn, C L and Schulke, O},
title = {{Female reproductive synchrony predicts skewed paternity across primates}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {6},
pages = {1150--1158},
month = nov
}
@article{Grieshop:2012kw,
author = {Grieshop, K},
title = {{THE PRECOPULATORY FUNCTION OF MALE GENITAL SPINES IN DROSOPHILA ANANASSAE}},
journal = {Evolution},
year = {2012}
}
@article{Firman:2008gz,
author = {Firman, R C and Simmons, L W},
title = {{The frequency of multiple paternity predicts variation in testes size among island populations of house mice}},
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {21},
number = {6},
pages = {1524--1533},
month = nov
}
@article{Wilson:2003wa,
author = {Wilson, GA and Wilson, GA and Rannala, B and Rannala, B},
title = {{Bayesian inference of recent migration rates using multilocus genotypes}},
journal = {Genetics},
year = {2003},
volume = {163},
number = {3},
pages = {1177--1191}
}
@article{Moquin:2010ce,
author = {Moquin, Paul and Curry, Ben and Pelletier, Fanie and Ruckstuhl, Kathreen E},
title = {{Plasticity in the rumination behaviour of bighorn sheep: contrasting strategies between the sexes?}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {5},
pages = {1047--1053},
month = may
}
@article{Innes:2012fc,
author = {Innes, Robin J and Innes, Robin J and McEachern, Mary Brooke and McEachern, Mary Brooke and van Vuren, Dirk H and van Vuren, Dirk H and Eadie, John M and Eadie, John M and Kelt, Douglas A and Kelt, Douglas A and Johnson, Michael L and Johnson, Michael L},
title = {{Genetic relatedness and spatial associations of dusky-footed woodrats (\textit{Neotoma fuscipes})}},
journal = {Journal of Mammalogy},
year = {2012},
volume = {93},
number = {2},
pages = {439--446},
month = apr
}
@article{Yang:2000wb,
author = {Yang, Ziheng and Bielawski, JP},
title = {{Statistical methods for detecting molecular adaptation}},
journal = {Trends In Ecology {\&} Evolution},
year = {2000},
volume = {15},
number = {12},
pages = {496--503}
}
@article{Kelley:2008br,
author = {Kelley, J L and Swanson, W J},
title = {{Dietary Change and Adaptive Evolution of enamelin in Humans and Among Primates}},
journal = {Genetics},
year = {2008},
volume = {178},
number = {3},
pages = {1595--1603},
month = feb
}
@article{Vitalone:2010ef,
author = {Vitalone, Matthew J and O'Connell, Philip J and Wavamunno, Moses and Fung, Caroline L-S and Chapman, Jeremy R and Nankivell, Brian J},
title = {{Transcriptome Changes of Chronic Tubulointerstitial Damage in Early Kidney Transplantation}},
journal = {Transplantation},
year = {2010},
volume = {89},
number = {5},
pages = {537--547},
month = mar
}
@article{White:1968vf,
author = {White, M J},
title = {{Models of speciation. New concepts suggest that the classical sympatric and allopatric models are not the only alternatives}},
journal = {Science (New York, NY)},
year = {1968},
volume = {159},
number = {819},
pages = {1065--1070},
month = mar
}
@article{Johnson:2004jo,
author = {Johnson, Jeff A and Bellinger, M Renee and Toepfer, John E and Toepfer, John E and Dunn, Peter},
title = {{Temporal changes in allele frequencies and low effective population size in greater prairie-chickens.}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {9},
pages = {2617--2630},
month = sep
}
@article{Brown:2002kc,
author = {Brown, Celeste J and Takayama, Sachiko and Campen, andrew M and Vise, Pam and Marshall, Thomas W and Oldfield, Christopher J and Williams, Christopher J and Keith Dunker, A},
title = {{Evolutionary Rate Heterogeneity in Proteins with Long Disordered Regions}},
journal = {Journal of Molecular Evolution},
year = {2002},
volume = {55},
number = {1},
pages = {104--110},
month = jul
}
@article{Gettinger:2011kk,
author = {Gettinger, Donald and Martins-Hatano, Fernanda and Gardner, Scott L},
title = {{Some Laelapine Mites (Acari: Laelapidae) Ectoparasitic on Small Mammals in the Galapagos Islands, Including a New Species of Gigantolaelaps From Aegialomys galapagoensis}},
journal = {Journal of Parasitology},
year = {2011},
volume = {97},
number = {4},
pages = {574--576},
month = aug
}
@article{Forsman:2008jr,
author = {Forsman, Anna M and Vogel, Laura A and Sakaluk, Scott K and Johnson, Bonnie G and Masters, Brian S and Johnson, L Scott and Thompson, Charles F},
title = {{Female house wrens (Troglodytes aedon) increase the size, but not immunocompetence, of their offspring through extra-pair mating}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {16},
pages = {3697--3706}
}
@article{Prohinar:2010du,
author = {Prohinar, Polonca and Prohinar, Polonca and Rallabhandi, Prasad and Rallabhandi, Prasad and Weiss, Jerrold P. and Weiss, Jerrold P. and Gioannini, Theresa L. and Gioannini, Theresa L.},
title = {{Expression of Functional D299G.T399I Polymorphic Variant of TLR4 Depends More on Coexpression of MD-2 Than Does Wild-Type TLR4}},
journal = {Journal of Immunology},
year = {2010},
volume = {184},
number = {8},
pages = {4362--4367}
}
@article{Yang:2009kz,
author = {Yang, Y and Sugimoto, J D and Halloran, M E and Basta, N E and Chao, D L and Matrajt, L and Potter, G and Kenah, E and Longini, I M},
title = {{The Transmissibility and Control of Pandemic Influenza A (H1N1) Virus}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5953},
pages = {729--733},
month = oct
}
@article{Ransohoff:2003bu,
author = {Ransohoff, Richard M and kk, Pia Kivis auml and Kidd, Grahame},
title = {{Three or more routes for leukocyte migration into the central nervous system}},
journal = {Nature Reviews Immunology},
year = {2003},
volume = {3},
number = {7},
pages = {569--581},
month = jul
}
@article{Carrigan:2012hp,
author = {Carrigan, Matthew A and Carrigan, Matthew A and Uryasev, Oleg and Uryasev, Oleg and Davis, Ross P and Davis, Ross P and Zhai, LanMin and Zhai, LanMin and Hurley, Thomas D and Hurley, Thomas D and Benner, Steven A and Benner, Steven A},
title = {{The Natural History of Class I Primate Alcohol Dehydrogenases Includes Gene Duplication, Gene Loss, and Gene Conversion}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e41175},
month = jul
}
@article{Hall:2012jr,
author = {Hall, David W and Hall, David W and Goodisman, Michael A D},
title = {{THE EFFECTS OF KIN SELECTION ON RATES OF MOLECULAR EVOLUTION IN SOCIAL INSECTS}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = feb
}
@article{Boots:2012dx,
author = {Boots, M and Roberts, K E},
title = {{Maternal effects in disease resistance: poor maternal environment increases offspring resistance to an insect virus}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1744},
pages = {4009--4014},
month = aug
}
@article{Teytelman:2009gi,
author = {Teytelman, Leonid and {\"O}zayd{\i}n, Bilge and Zill, Oliver and Lefrancois, Philippe and Snyder, Michael and Rine, Jasper and Eisen, Michael B},
title = {{Impact of Chromatin Structures on DNA Processing for Genomic Analyses}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6700},
month = aug
}
@article{Anonymous:2010im,
author = {Davis, Brian W and Li, Gang and Murphy, William J},
title = {{Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2010},
volume = {56},
number = {1},
pages = {64--76},
month = jul
}
@article{Clark:2012kt,
author = {Clark, Sean C A and Sharp, Nathaniel P and Rowe, Locke and Agrawal, Aneil F},
title = {{Relative Effectiveness of Mating Success and Sperm Competition at Eliminating Deleterious Mutations in \textit{Drosophila} \textit{melanogaster}}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e37351},
month = may
}
@article{Immler:2009iv,
author = {Immler, Simone and Taborsky, Michael},
title = {{Sequential polyandry affords post-mating sexual selection in the mouths of cichlid females}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {8},
pages = {1219--1230},
month = mar
}
@article{Hall:2008dy,
author = {Hall, M L and Peters, A},
title = {{Do male paternity guards ensure female fidelity in a duetting fairy-wren?}},
journal = {Behavioral Ecology},
year = {2008},
volume = {20},
number = {1},
pages = {222--228},
month = dec
}
@article{Koenig:2009gq,
author = {Koenig, Walter D and Knops, Johannes M H and Carmen, William J and Sage, Richard D},
title = {{No Trade-off between Seed Size and Number in the Valley Oak Quercus lobata}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {5},
pages = {682--688},
month = may
}
@article{Votypka:2002vg,
author = {Vot{\'{y}}pka, J and Vot{\'{y}}pka, J and Oborn{\'\i}k, M and Oborn{\'\i}k, M and Volf, P and Svobodov{\'a}, M and Svobodov{\'a}, M and Lukes, J and Lukes, J},
title = {{Trypanosoma avium of raptors (Falconiformes): phylogeny and identification of vectors}},
journal = {Parasitology},
year = {2002},
volume = {125},
number = {Pt 3},
pages = {253--263},
month = sep
}
@article{Bradshaw:2001vd,
author = {Bradshaw, S D and Bradshaw, S D and Morris, K D and Morris, K D and Bradshaw, F J and Bradshaw, F J},
title = {{Water and electrolyte homeostasis and kidney function of desert-dwelling marsupial wallabies in Western Australia.}},
journal = {Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology},
year = {2001},
volume = {171},
number = {1},
pages = {22--32},
month = feb
}
@article{Salem:2012bl,
author = {Salem, M and Vallejo, RL and Leeds, TD and Palti, Y and Liu, S},
title = {{RNA-Seq Identifies SNP Markers for Growth Traits in Rainbow Trout}},
journal = {PLOS ONE},
year = {2012}
}
@article{TelonisScott:2012jl,
author = {Telonis-Scott, Marina and Telonis-Scott, Marina and Gane, Madeleine and Gane, Madeleine and Degaris, Sarah and Degaris, Sarah and Sgr{\`o}, Carla M and Hoffmann, Ary A},
title = {{High Resolution Mapping of Candidate Alleles for Desiccation Resistance in \textit{Drosophila} \textit{melanogaster} under Selection.}},
journal = {Molecular Biology and Evolution},
year = {2012},
volume = {29},
number = {5},
pages = {1335--1351},
month = may
}
@article{Venditti:2009go,
author = {Venditti, Chris and Pagel, Mark},
title = {{Speciation as an active force in promoting genetic evolution}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {1},
pages = {14--20},
month = jan
}
@article{Miczek:1995to,
author = {Miczek, KA and Weerts, EM and Weerts, EM and Vivian, JA and Vivian, JA and Barros, HM and Barros, HM},
title = {{Aggression, anxiety and vocalizations in animals: GABA$_{A}$ and 5-HT anxiolytics}},
journal = {Psychopharmacology},
year = {1995},
volume = {121},
number = {1},
pages = {38--56}
}
@article{Gade:2012cy,
author = {Gade, Padmaja and Kalvakolanu, Dhan V},
title = {{Chromatin immunoprecipitation assay as a tool for analyzing transcription factor activity.}},
journal = {Methods in molecular biology (Clifton, N.J.)},
year = {2012},
volume = {809},
pages = {85--104}
}
@article{Huynen:2010ji,
author = {Huynen, L and Gill, B J and Millar, C D and Lambert, D M},
title = {{Ancient DNA reveals extreme egg morphology and nesting behavior in New Zealand's extinct moa}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {37},
pages = {16201--16206},
month = sep
}
@article{Zanette:2012go,
author = {Zanette, Lorenzo R S and Miller, Sophie D L and Miller, Sophie D L and Faria, Christiana M A and Faria, Christiana M A and Almond, Edd J and Almond, Edd J and Huggins, Tim J and Huggins, Tim J and Jordan, William C and Jordan, William C and Bourke, andrew F G and Bourke, andrew F G},
title = {{REPRODUCTIVE CONFLICT IN BUMBLEBEES AND THE EVOLUTION OF WORKER POLICING}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = jun
}
@article{Kommadath:2011kg,
author = {Kommadath, Arun and Kommadath, Arun and Woelders, Henri and Woelders, Henri and Beerda, Bonne and Beerda, Bonne and Mulder, Herman A and Mulder, Herman A and de Wit, Agnes AC and de Wit, Agnes AC and Veerkamp, Roel F and Veerkamp, Roel F and te Pas, Marinus FW and te Pas, Marinus FW and Smits, Mari A and Smits, Mari A},
title = {{Gene expression patterns in four brain areas associate with quantitative measure of estrous behavior in dairy cows.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {200},
month = apr
}
@article{Chaisson:2004kf,
author = {Chaisson, M and Chaisson, M and Pevzner, P and Pevzner, P and Tang, H X and Tang, H X},
title = {{Fragment assembly with short reads}},
journal = {Bioinformatics (Oxford, England)},
year = {2004},
volume = {20},
number = {13},
pages = {2067--2074},
month = sep
}
@article{Agrawal:2012ca,
author = {Agrawal, Aneil F and Whitlock, Michael C and Whitlock, Michael C},
title = {{Mutation Load: The Fitness of Individuals in Populations Where Deleterious Alleles Are Abundant}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2012},
volume = {43},
number = {1},
pages = {115--135},
month = dec
}
@article{Szathmary:2011cn,
author = {Szathm{\'a}ry, E{\"o}rs},
title = {{Evolution. To group or not to group?}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6063},
pages = {1648--1649},
month = dec
}
@article{BURGARELLA:2012em,
author = {BURGARELLA, C and BURGARELLA, C and NAVASCU{\'E}S, M and NAVASCU{\'E}S, M and ZABAL-AGUIRRE, M and ZABAL-AGUIRRE, M and BERGANZO, E and BERGANZO, E and RIBA, M and RIBA, M and MAYOL, M and MAYOL, M and VENDRAMIN, G G and VENDRAMIN, G G and GONZ{\'A}LEZ-MART{\'I}NEZ, S C and GONZ{\'A}LEZ-MART{\'I}NEZ, S C},
title = {{Recent population decline and selection shape diversity of taxol-related genes}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = may
}
@article{Patot:2010kc,
author = {Patot, S and Martinez, J and Allemand, R and Gandon, S and Varaldi, J and Fleury, F},
title = {{Prevalence of a virus inducing behavioural manipulation near species range border}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {14},
pages = {2995--3007},
month = jun
}
@article{RichardsZawacki:2012br,
author = {Richards-Zawacki, Corinne L and Richards-Zawacki, Corinne L and Wang, Ian J and Wang, Ian J and Summers, Kyle},
title = {{Mate choice and the genetic basis for colour variation in a polymorphic dart frog: inferences from a wild pedigree.}},
journal = {Molecular Ecology},
year = {2012},
month = may
}
@article{Reed:2008bt,
author = {Reed, T E and Daunt, F and Hall, M E and Phillips, R A and Wanless, S and Cunningham, E J A},
title = {{Parasite Treatment Affects Maternal Investment in Sons}},
journal = {Science (New York, NY)},
year = {2008},
volume = {321},
number = {5896},
pages = {1681--1682},
month = sep
}
@article{Platt:2010cu,
author = {Platt, A and Vilhjalmsson, B J and Nordborg, M},
title = {{Conditions Under Which Genome-Wide Association Studies Will be Positively Misleading}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {3},
pages = {1045--1052},
month = nov
}
@article{Schanfield:1989tg,
author = {Schanfield, M S},
title = {{Application of Immunoglobulin Heavy-Chain (Gm, Am) and Light Chain (Km) Allotypes to Cases of Disputed Paternity}},
journal = {Experimental and Clinical Immunogenetics},
year = {1989},
volume = {6},
pages = {112--122},
month = mar
}
@article{Good:2008ex,
author = {Good, J M and Dean, M D and NACHMAN, M W},
title = {{A Complex Genetic Basis to X-Linked Hybrid Male Sterility Between Two Species of House Mice}},
journal = {Genetics},
year = {2008},
volume = {179},
number = {4},
pages = {2213--2228},
month = aug
}
@article{Mardis:2009ee,
author = {Mardis, Elaine R and Ding, Li and Dooling, David J and Larson, David E and McLellan, Michael D and Chen, Ken and Koboldt, Daniel C and Fulton, Robert S and Delehaunty, Kim D and Mcgrath, Sean D and Fulton, Lucinda A and Locke, Devin P and Magrini, Vincent J and Abbott, Rachel M and Vickery, Tammi L and Reed, Jerry S and Robinson, Jody S and Wylie, Todd and Smith, Scott M and Carmichael, Lynn and Eldred, James M and Harris, Christopher C and Walker, Jason and Peck, Joshua B and Du, Feiyu and Dukes, Adam F and Sanderson, Gabriel E and Brummett, Anthony M and Clark, Eric and McMichael, Joshua F and Meyer, Rick J and Schindler, Jonathan K and Pohl, Craig S and Wallis, John W and Shi, Xiaoqi and Lin, Ling and Schmidt, Heather and Tang, Yuzhu and Haipek, Carrie and Wiechert, Madeline E and Ivy, Jolynda V and Kalicki, Joelle and Elliott, Glendoria and Ries, Rhonda E and Payton, Jacqueline E and Westervelt, Peter and Tomasson, Michael H and Watson, Mark A and Baty, Jack and Heath, Sharon and Shannon, William D and Nagarajan, Rakesh and Link, Daniel C and Walter, Matthew J and Graubert, Timothy A and DiPersio, John F and Wilson, Richard K and Ley, Timothy J},
title = {{Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome}},
journal = {New England Journal of Medicine},
year = {2009},
volume = {361},
number = {11},
pages = {1058--1066},
month = sep
}
@article{Westneat:1997wx,
author = {Westneat, DF and Sherman, PW},
title = {{Density and extra-pair fertilizations in birds: a comparative analysis}},
journal = {Behavioral Ecology and Sociobiology},
year = {1997},
volume = {41},
number = {4},
pages = {205--215}
}
@article{Aagaard:2010fe,
author = {Aagaard, J E and Vacquier, V D and Maccoss, M J and Swanson, W J},
title = {{ZP Domain Proteins in the Abalone Egg Coat Include a Paralog of VERL under Positive Selection That Binds Lysin and 18-kDa Sperm Proteins}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {27},
number = {1},
pages = {193--203},
month = dec
}
@article{Peters:2012cn,
author = {Peters, Jeffrey L and BOLENDER, KIMBERLY A and PEARCE, JOHN M},
title = {{Behavioural vs. molecular sources of conflict between nuclear and mitochondrial DNA: the role of male-biased dispersal in a Holarctic sea duck}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = may
}
@article{Legge:2000wl,
author = {Legge, S and Cockburn, A},
title = {{Social and mating system of cooperatively breeding laughing kookaburras (Dacelo novaeguineae)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2000},
volume = {47},
number = {4},
pages = {220--229}
}
@article{Imelfort:2009ez,
author = {Imelfort, M and Edwards, D},
title = {{\textit{De novo} sequencing of plant genomes using second-generation technologies}},
journal = {Briefings In Bioinformatics},
year = {2009},
volume = {10},
number = {6},
pages = {609--618},
month = nov
}
@article{Muller:2007dj,
author = {Muller, C A and Manser, M B},
title = {{'Nasty neighbours' rather than 'dear enemies' in a social carnivore}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1612},
pages = {959--965},
month = apr
}
@article{Schubert:2009wa,
author = {Schubert, Melanie and Pillay, Neville and Schradin, Carsten},
title = {{PARENTAL AND ALLOPARENTAL CARE IN A POLYGYNOUS MAMMAL}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {3},
pages = {724--731}
}
@article{Takahashi:2003bq,
author = {Takahashi, K and Takahashi, K and Liu, FC and Liu, FC and Hirokawa, K and Hirokawa, K and Takahashi, H and Takahashi, H},
title = {{Expression of Foxp2, a gene involved in speech and language, in the developing and adult striatum}},
journal = {Journal of Neuroscience Research},
year = {2003},
volume = {73},
number = {1},
pages = {61--72}
}
@article{Lopes:2013fd,
author = {Lopes, J S and Arenas, M and Posada, D and Beaumont, M A},
title = {{Coestimation of recombination, substitution and molecular adaptation rates by approximate Bayesian computation}},
year = {2013},
volume = {112},
number = {3},
pages = {255--264},
month = oct
}
@article{Cohen:2011js,
author = {Cohen, Netta Mendelson and Kenigsberg, Ephraim and Tanay, Amos},
title = {{Primate CpG islands are maintained by heterogeneous evolutionary regimes involving minimal selection.}},
journal = {Cell},
year = {2011},
volume = {145},
number = {5},
pages = {773--786},
month = may
}
@article{DRICKAMELC:1973ul,
author = {DRICKAMELC and VESTAL, BM and VESTAL, BM},
title = {{PATTERNS OF REPRODUCTION IN A LABORATORY COLONY OF PEROMYSCUS}},
journal = {Journal of Mammalogy},
year = {1973},
volume = {54},
number = {2},
pages = {523--528}
}
@article{Foster:2006fb,
author = {FOSTER, K and Wenseleers, T and RATNIEKS, F},
title = {{Kin selection is the key to altruism}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {2},
pages = {57--60},
month = feb
}
@article{Findlay:2009if,
author = {Findlay, G D and Maccoss, M J and Swanson, W J},
title = {{Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in \textit{Drosophila}}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {5},
pages = {886--896},
month = may
}
@article{Morrison:2002id,
author = {Morrison, C L and Harvey, A W and Lavery, S and Tieu, K and Huang, Y and Cunningham, C W},
title = {{Mitochondrial gene rearrangements confirm the parallel evolution of the crab-like form}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2002},
volume = {269},
number = {1489},
pages = {345--350},
month = feb
}
@article{Paczolt:2010cb,
author = {Paczolt, Kimberly A and Jones, Adam G},
title = {{Post-copulatory sexual selection and sexual conflict in the evolution of male pregnancy}},
journal = {Nature},
year = {2010},
volume = {464},
number = {7287},
pages = {401--404},
month = mar
}
@article{Parish:2000vl,
author = {Parish, A R and Parish, A R and De Waal, F B and De Waal, F B},
title = {{The other "closest living relative". How bonobos (Pan paniscus) challenge traditional assumptions about females, dominance, intra- and intersexual interactions, and hominid evolution.}},
journal = {Annals of the New York Academy of Sciences},
year = {2000},
volume = {907},
pages = {97--113},
month = apr
}
@article{Mastrokolias:2012bi,
author = {Mastrokolias, Anastasios and Mastrokolias, Anastasios and den Dunnen, Johan T and van Ommen, GertJan B and van Ommen, GertJan B and t Hoen, Peter A C and t Hoen, Peter A C and van Roon-Mom, Willeke M C and van Roon-Mom, Willeke M C},
title = {{Increased sensitivity of next generation sequencing-based expression profiling after globin reduction in human blood RNA.}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
pages = {28}
}
@article{Dupanloup:2003ft,
author = {Dupanloup, Isabelle and Pereira, Lu sa and Bertorelle, Giorgio and Calafell, Francesc and Prata, Maria Jo o and Amorim, Antonio and Barbujani, Guido},
title = {{A Recent Shift from Polygyny to Monogamy in Humans Is Suggested by the Analysis of Worldwide Y-Chromosome Diversity}},
journal = {Journal of Molecular Evolution},
year = {2003},
volume = {57},
number = {1},
pages = {85--97},
month = jul
}
@article{Dickie:2007cy,
author = {Dickie, I A and FitzJohn, R G},
title = {{Using terminal restriction fragment length polymorphism (T-RFLP) to identify mycorrhizal fungi: a methods review}},
journal = {Mycorrhiza},
year = {2007},
volume = {17},
number = {4},
pages = {259--270},
month = apr
}
@article{Cui:2009bd,
author = {Cui, J and Smith, T and Robbins, P W and Samuelson, J},
title = {{Darwinian selection for sites of Asn-linked glycosylation in phylogenetically disparate eukaryotes and viruses}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {32},
pages = {13421--13426},
month = aug
}
@article{Suzuki:2009hf,
author = {Suzuki, G and Harper, K M and Hiramoto, T and Sawamura, T and Lee, M and Kang, G and Tanigaki, K and Buell, M and Geyer, M A and Trimble, W S and Agatsuma, S and Hiroi, N},
title = {{Sept5 deficiency exerts pleiotropic influence on affective behaviors and cognitive functions in mice}},
journal = {Human Molecular Genetics},
year = {2009},
volume = {18},
number = {9},
pages = {1652--1660},
month = jan
}
@article{Draud:2004vk,
author = {Draud, MJ and Itzkowitz, M},
title = {{Mate numbers or mate quality: female mate choice in the polygynandrous variegated pupfish (Cyprinodon variegatus)}},
journal = {Ethology Ecology {\&} Evolution},
year = {2004},
volume = {16},
number = {1},
pages = {1--13}
}
@article{Poesel:2006go,
author = {Poesel, Angelika and Kunc, Hansjoerg P and Foerster, Katharina and Johnsen, Arild and Kempenaers, Bart},
title = {{Early birds are sexy: male age, dawn song and extrapair paternity in blue tits, Cyanistes (formerly Parus) caeruleus}},
journal = {Animal Behaviour},
year = {2006},
volume = {72},
number = {3},
pages = {531--538},
month = sep
}
@article{Wampler:2008ti,
author = {Wampler, Christina R and Frey, Jennifer K and VanLeeuwen, Dawn M and Boren, Jon C and Baker, Terrell T},
title = {{MAMMALS IN MECHANICALLY THINNED AND NON-THINNED MIXED-CONIFEROUS FOREST IN THE SACRAMENTO MOUNTAINS, NEW MEXICO}},
journal = {Southwestern Naturalist},
year = {2008},
volume = {53},
number = {4},
pages = {431--443}
}
@article{Burger:2010bu,
author = {Burger, O and Walker, R and Hamilton, M J},
title = {{Lifetime reproductive effort in humans}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1682},
pages = {773--777},
month = jan
}
@article{Krishnan:2008je,
author = {Krishnan, Manoj N and Ng, Aylwin and Sukumaran, Bindu and Gilfoy, Felicia D and Uchil, Pradeep D and Sultana, Hameeda and Brass, Abraham L and Adametz, Rachel and Tsui, Melody and Qian, Feng and Montgomery, Ruth R and Lev, Sima and Mason, Peter W and Koski, Raymond A and Elledge, Stephen J and Xavier, Ramnik J and Agaisse, Herve and Fikrig, Erol},
title = {{RNA interference screen for human genes associated with West Nile virus infection}},
journal = {Nature},
year = {2008},
volume = {455},
number = {7210},
pages = {242--245},
month = aug
}
@article{Archie:2011vf,
author = {Archie, EA},
title = {{Animal behaviour meets microbial ecology}},
journal = {Animal Behaviour},
year = {2011}
}
@article{Tseng:2009cx,
author = {Tseng, Huei-Hun E and Tompa, Martin},
title = {{Algorithms for locating extremely conserved elements in multiple sequence alignments}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {432}
}
@article{Langmead:2012jh,
author = {Langmead, Ben and Langmead, Ben and Salzberg, Steven L},
title = {{Fast gapped-read alignment with Bowtie 2.}},
journal = {Nature Methods},
year = {2012},
volume = {9},
number = {4},
pages = {357--359},
month = apr
}
@article{Bradley:2004tc,
author = {Bradley, RD and Carroll, DS and Haynie, ML and Martinez, RM and Hamilton, MJ and Hamilton, MJ and Kilpatrick, CW},
title = {{A new species of \textit{Peromyscus} from western Mexico}},
journal = {Journal of Mammalogy},
year = {2004},
volume = {85},
number = {6},
pages = {1184--1193}
}
@article{Choate:2005tq,
author = {Choate, B A and Rieske, L K},
title = {{Life history and age-specific mortality of eastern tent caterpillar (Lepidoptera: Lasiocampidae)}},
journal = {Annals of the Entomological Society of America},
year = {2005},
volume = {98},
number = {4},
pages = {496--502}
}
@article{Than:2009ir,
author = {Than, Cuong and Nakhleh, Luay},
title = {{Species Tree Inference by Minimizing Deep Coalescences}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {9},
pages = {e1000501},
month = sep
}
@article{vanZweden:2010hd,
author = {van Zweden, J S and Brask, J B and Christensen, J H and Boomsma, J J and Linksvayer, T A and D'Ettorre, P},
title = {{Blending of heritable recognition cues among ant nestmates creates distinct colony gestalt odours but prevents within-colony nepotism}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {7},
pages = {1498--1508},
month = may
}
@article{Merritt:1978vg,
author = {Merritt, JF},
title = {{\textit{Peromyscus} \textit{californicus}}},
journal = {Mammalian Species},
year = {1978},
pages = {1--6}
}
@article{Hudson:2012cr,
author = {Hudson, Nicholas J and Dalrymple, Brian P and Reverter, Antonio},
title = {{Beyond differential expression: the quest for causal mutations and effector molecules}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {356}
}
@article{Maxson:1974un,
author = {Maxson, KA},
title = {{ScienceDirect - Comparative Biochemistry and Physiology Part A: Physiology : Water and salt regulation in the antelope ground squirrel (Ammospermophilus leucurus)}},
journal = {{\ldots} Biochemistry and Physiology Part A: Physiology},
year = {1974}
}
@article{Abolins:2010fn,
author = {Abolins, Stephen R and Pocock, Michael J O and Hafalla, Julius C R and Riley, Eleanor M and Viney, Mark E},
title = {{Measures of immune function of wild mice, Mus musculus}},
journal = {Molecular Ecology},
year = {2010},
volume = {20},
number = {5},
pages = {881--892},
month = nov
}
@article{Di:2011ux,
author = {Di, Yanming and Schafer, Daniel},
title = {{NBPSeq}},
year = {2011},
pages = {1--13},
month = apr
}
@article{Turnbaugh:2009ei,
author = {Turnbaugh, Peter J and Hamady, Micah and Yatsunenko, Tanya and Cantarel, Brandi L and Duncan, Alexis and Ley, Ruth E and Sogin, Mitchell L and Jones, William J and Roe, Bruce A and Affourtit, Jason P and Egholm, Michael and Henrissat, Bernard and Heath, andrew C and Knight, Rob and Gordon, Jeffrey I},
title = {{A core gut microbiome in obese and lean twins}},
journal = {Nature},
year = {2008},
volume = {457},
number = {7228},
pages = {480--484},
month = nov
}
@article{Webster:2004if,
author = {Webster, M.S.},
title = {{Reproductive promiscuity in the splendid fairy-wren: effects of group size and auxiliary reproduction}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {6},
pages = {907--915},
month = jun
}
@article{Wingfield:1990vb,
author = {Wingfield, JC and Hegner, RE and Hegner, RE and Dufty, AM and Dufty, AM and Ball, GF and Ball, GF},
title = {{The Challenge Hypothesis - Theoretical Implications for Patterns of Testosterone Secretion, Mating Systems, and Breeding Strategies}},
journal = {The American Naturalist},
year = {1990},
volume = {136},
number = {6},
pages = {829--846}
}
@article{Trtkova:1993wm,
author = {Trtkova, K and KUPFERMANN, H and KUPFERMANN, H and GRAHOVAC, B and GRAHOVAC, B and Mayer, WE and OHUigin, C and TICHY, H and TICHY, H and BONTROP, R and BONTROP, R and Klein, J},
title = {{MHC-DRB GENES OF PLATYRRHINE PRIMATES}},
journal = {Immunogenetics},
year = {1993},
volume = {38},
number = {3},
pages = {210--222}
}
@article{Zeh:2001ia,
author = {Zeh, Jeanne A and Zeh, David W},
title = {{Reproductive mode and the genetic benefits of polyandry}},
journal = {Animal Behaviour},
year = {2001},
volume = {61},
number = {6},
pages = {1051--1063},
month = jun
}
@inproceedings{Stein:1998vj,
author = {Stein, MB and Stein, MB},
title = {{Neurobiological perspectives on social phobia: From affiliation to zoology}},
booktitle = {Biological Psychiatry},
year = {1998},
pages = {1277--1285},
organization = {Univ Calif San Diego, Dept Psychiat 0985, La Jolla, CA 92093 USA}
}
@article{Lighten:2014bp,
author = {Lighten, Jackie and van Oosterhout, Cock and Paterson, Ian G and McMullan, Mark and Bentzen, Paul},
title = {{Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy ( Poecilia reticulata)}},
journal = {Molecular Ecology Resources},
year = {2014},
pages = {n/a--n/a},
month = feb
}
@article{Millan:2003vu,
author = {Millan, Mark J},
title = {{The neurobiology and control of anxious states}},
journal = {Progress in Neurobiology},
year = {2003},
volume = {70},
number = {2},
pages = {83--244},
month = jun
}
@article{Khaitovich:2005ie,
author = {Khaitovich, P and Paabo, S and Weiss, G},
title = {{Toward a neutral evolutionary model of gene expression}},
journal = {Genetics},
year = {2005},
volume = {170},
number = {2},
pages = {929--939}
}
@article{Anonymous:U0DV-kP1,
title = {{An Improved Approach for Construction of Bacterial Artificial Chromosome Libraries}},
year = {1998},
pages = {1--8},
month = sep
}
@article{Casiraghi:2005je,
author = {Casiraghi, Maurizio and Ferraguti, Marco},
title = {{The occurrence of strongylid nematodes in the epididymides of wood mice}},
journal = {Trends in Parasitology},
year = {2005},
volume = {21},
number = {7},
pages = {305--307},
month = jul
}
@article{Solomon:2004fr,
author = {Solomon, Nancy G and Keane, Brian and Knoch, Lana R and Hogan, Paula J},
title = {{Multiple paternity in socially monogamous prairie voles ( \textit{Microtus ochrogaster})}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2004},
volume = {82},
number = {10},
pages = {1667--1671},
month = oct
}
@article{Lucas:2005vw,
author = {Lucas, FS and Lucas, FS and Heeb, P and Heeb, P},
title = {{Environmental factors shape cloacal bacterial assemblages in great tit Parus major and blue tit P-caeruleus nestlings}},
journal = {Journal of Avian Biology},
year = {2005},
volume = {36},
number = {6},
pages = {510--516}
}
@article{Fromhage:2007ci,
journal = {Ethology},
year = {2007},
volume = {113},
number = {8},
month = aug
}
@article{Lacey:2001tf,
author = {Lacey, Eileen A},
title = {{Microsatellite variation in solitary and social tuco-tucos: molecular properties and population dynamics}},
journal = {Heredity},
year = {2001},
volume = {86},
number = {5},
pages = {628--637},
month = may
}
@article{Taylor:2007tt,
author = {Taylor, Michelle L and Wedell, Nina and Hosken, David J},
title = {{The heritability of attractiveness}},
journal = {Current biology : CB},
year = {2007},
volume = {17},
number = {22},
pages = {R959--R960}
}
@article{Rowe:2001wj,
author = {Rowe, DL and Murphy, MT and FLEISCHER, RC and Wolf, PG},
title = {{High frequency of extra-pair paternity in Eastern Kingbirds}},
journal = {The Condor},
year = {2001},
volume = {103},
number = {4},
pages = {845--851}
}
@article{Tomasco:2011cu,
author = {Tomasco, Ivanna H and Lessa, Enrique P},
title = {{The evolution of mitochondrial genomes in subterranean caviomorph rodents: Adaptation against a background of purifying selection}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2011},
volume = {61},
number = {1},
pages = {64--70},
month = oct
}
@article{Gaulton:2010kr,
author = {Gaulton, Kyle J. and Gaulton, Kyle J. and Nammo, Takao and Nammo, Takao and Pasquali, Lorenzo and Pasquali, Lorenzo and Simon, Jeremy M. and Giresi, Paul G. and Fogarty, Marie P. and Fogarty, Marie P. and Panhuis, Tami M. and Mieczkowski, Piotr and Mieczkowski, Piotr and Secchi, Antonio and Secchi, Antonio and Bosco, Domenico and Bosco, Domenico and Berney, Thierry and Berney, Thierry and Montanya, Eduard and Montanya, Eduard and Mohlke, Karen L and Lieb, Jason D. and Ferrer, Jorge and Ferrer, Jorge},
title = {{A map of open chromatin in human pancreatic islets}},
journal = {Nature Genetics},
year = {2010},
volume = {42},
number = {3},
pages = {255--U41}
}
@article{Morrissey:2009hh,
author = {Morrissey, Michael B and Wilson, Alastair J},
title = {{pedantics: an r package for pedigree-based genetic simulation and pedigree manipulation, characterization and viewing}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {10},
number = {4},
pages = {711--719},
month = dec
}
@article{Li:2010bl,
author = {Li, H and Durbin, R},
title = {{Fast and accurate long-read alignment with Burrows-Wheeler transform}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {5},
pages = {589--595},
month = feb
}
@article{Wright:2010bc,
author = {Wright, J and McDonald, P G and te Marvelde, L and Kazem, A J N and Bishop, C M},
title = {{Helping effort increases with relatedness in bell miners, but 'unrelated' helpers of both sexes still provide substantial care}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {277},
number = {1680},
pages = {437--445},
month = dec
}
@article{Wang:2009jc,
author = {Wang, Jinliang},
title = {{A new method for estimating effective population sizes from a single sample of multilocus genotypes}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {10},
pages = {2148--2164},
month = may
}
@article{Bellemain:2006ex,
author = {Bellemain, E and Zedrosser, A and Manel, S and Waits, L P and Taberlet, P and Swenson, J E},
title = {{The dilemma of female mate selection in the brown bear, a species with sexually selected infanticide}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1584},
pages = {283--291},
month = feb
}
@article{Petsko:2007kg,
author = {Petsko, Gregory A},
title = {{A day in the life of a genome biologist in the not-too-distant future}},
journal = {Genome Biology},
year = {2007},
volume = {8},
number = {3},
pages = {104},
annote = {Indeed not-to-distant future:
"6:15 pm to 7 pm.packed up to go home. Waited 45 minutes for shuttle bus to parking lot. while waiting, checked latest news on iPhone."}
}
@article{Zhou:2010kn,
author = {Zhou, T and Gu, W and Wilke, C O},
title = {{Detecting Positive and Purifying Selection at Synonymous Sites in Yeast and Worm}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {8},
pages = {1912--1922},
month = jul
}
@article{Strich:2011gj,
author = {Strich, R},
title = {{Meiotic, cryptic, and stable unannotated transcripts: Noncoding RNAs add to the epigenetic tool box controlling meiotic development}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {3},
pages = {891--892},
month = jan
}
@article{dosSantos:2011fs,
author = {dos Santos, Henrique Fragoso and Cury, Juliano Carvalho and Do Carmo, Flavia Lima and dos Santos, Adriana Lopes and Tiedje, James and van Elsas, Jan Dirk and Rosado, Alexandre Soares and Peixoto, Raquel Silva},
title = {{Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {3},
pages = {e16943},
month = mar
}
@article{Skuse:2011ia,
author = {Skuse, David H and Gallagher, Louise and Gallagher, Louise},
title = {{Genetic influences on social cognition.}},
journal = {Pediatric research},
year = {2011},
volume = {69},
number = {5 Pt 2},
pages = {85R--91R},
month = may
}
@article{Turner:2009di,
author = {Turner, Daniel J and Keane, Thomas M and Sudbery, Ian and Adams, David J},
title = {{Next-generation sequencing of vertebrate experimental organisms}},
journal = {Mammalian Genome},
year = {2009},
volume = {20},
number = {6},
pages = {327--338},
month = may
}
@article{Dahllof:2000vd,
author = {Dahll{\"o}f, I and Baillie, H and Kjelleberg, S and Kjelleberg, S},
title = {{rpoB-based microbial community analysis avoids limitations inherent in 16S rRNA gene intraspecies heterogeneity}},
journal = {Applied and Environmental Microbiology},
year = {2000},
volume = {66},
number = {8},
pages = {3376--3380},
month = aug
}
@article{Dalby:2006kc,
author = {Dalby, A B and Dalby, A B and Frank, D N and Frank, D N and St Amand, A L and St Amand, A L and Bendele, A M and Bendele, A M and Pace, N R and Pace, N R},
title = {{Culture-Independent Analysis of Indomethacin-Induced Alterations in the Rat Gastrointestinal Microbiota}},
journal = {Applied and Environmental Microbiology},
year = {2006},
volume = {72},
number = {10},
pages = {6707--6715},
month = oct
}
@article{Hale:2009jk,
author = {Hale, Matthew C and Mccormick, Cory R and Jackson, James R and Dewoody, J andrew},
title = {{Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {203}
}
@article{LOSDAT:2011dc,
author = {LOSDAT, S and LOSDAT, S and Helfenstein, F and Helfenstein, F and SALADIN, V and SALADIN, V and RICHNER, H and RICHNER, H},
title = {{Higher in vitro resistance to oxidative stress in extra-pair offspring}},
journal = {Journal of Evolutionary Biology},
year = {2011},
pages = {no--no},
month = sep
}
@article{Taylor:2010gm,
author = {Taylor, Zachary S and Hoffman, Susan M G},
title = {{Mitochondrial DNA genetic structure transcends natural boundaries in Great Lakes populations of woodland deer mice (\textit{Peromyscus} \textit{maniculatus} gracilis)}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2010},
volume = {88},
number = {4},
pages = {404--415},
month = apr
}
@article{Overdorff:1998ue,
author = {Overdorff, DJ},
title = {{Are Eulemur species pair-bonded? Social organization and mating strategies in Eulemur fulvus rufus from 1988-1995 in southeast Madagascar}},
journal = {American Journal of Physical Anthropology},
year = {1998},
volume = {105},
number = {2},
pages = {153--166}
}
@article{Woodruff:2009kg,
author = {Woodruff, R C and Zhang, M},
title = {{Adaptation from Leaps in the Dark}},
journal = {Journal of Heredity},
year = {2008},
volume = {100},
number = {1},
pages = {7--10},
month = may
}
@article{Paster:2001wu,
author = {Paster, BJ and Boches, SK and Galvin, JL and Ericson, RE and Ericson, RE and Lau, CN and Lau, CN and Levanos, VA and Levanos, VA and Sahasrabudhe, A and Sahasrabudhe, A and Dewhirst, FE and Dewhirst, FE},
title = {{Bacterial diversity in human subgingival plaque}},
journal = {Journal of Bacteriology},
year = {2001},
volume = {183},
number = {12},
pages = {3770--3783}
}
@article{Nie:2011bf,
author = {Nie, Q and Fang, M and Jia, X and Zhang, W and Zhou, X and He, X and Zhang, X},
title = {{Analysis of Muscle and Ovary Transcriptome of Sus scrofa: Assembly, Annotation and Marker Discovery}},
journal = {DNA Research},
year = {2011},
volume = {18},
number = {5},
pages = {343--351},
month = oct
}
@article{Anonymous:ZWHv2Hm3,
author = {Harada, Yuko and Iwasa, Yoh},
title = {{Female mate preference to maximize paternal care: a two-step game}},
journal = {American Naturalist},
year = {1996},
pages = {996--1027}
}
@article{Wagner:1996tf,
author = {Wagner, RH and Schug, MD and Morton, ES},
title = {{Confidence of paternity, actual paternity and parental effort by purple martins}},
journal = {Animal Behaviour},
year = {1996},
volume = {52},
pages = {123--132}
}
@article{Ellegren:1996tx,
author = {Ellegren, H and Mikko, S and Wallin, K and andersson, L},
title = {{Limited polymorphism at major histocompatibility complex (MHC) loci in the Swedish moose \emph{A. alces}}},
journal = {Molecular Ecology},
year = {1996},
volume = {5},
number = {1},
pages = {3--9}
}
@article{Whitford:1975wc,
author = {Whitford, WG and KAY, CA and KAY, CA and SCHUMACHER, AM and SCHUMACHER, AM},
title = {{Water-Loss in Chihuahuan Desert Ants}},
journal = {Physiological Zoology},
year = {1975},
volume = {48},
number = {4},
pages = {390--397}
}
@article{Zielinski:2013dga,
author = {Zieli{\'{n}}ski, P and Stuglik, M T and Dudek, K and Konczal, M and Babik, W},
title = {{Development, validation and high-throughput analysis of sequence markers in nonmodel species}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {1--9},
month = oct
}
@book{Hut:2012ef,
author = {Hut, Roelof A and Hut, Roelof A and Kronfeld-Schor, Noga and van der Vinne, Vincent and van der Vinne, Vincent and De la Iglesia, Horacio and De la Iglesia, Horacio},
title = {{In search of a temporal niche: Environmental factors}},
publisher = {Elsevier B.V.},
year = {2012},
volume = {199},
edition = {1}
}
@article{McCracken:2009hl,
author = {McCracken, Kevin G and Barger, Christopher P and Bulgarella, Mariana and Johnson, Kevin P and Kuhner, Mary K and Moore, andrew V and Peters, Jeffrey L and Trucco, Jorge and Valqui, Thomas H and Winker, Kevin and Wilson, Robert E},
title = {{Signatures of High-Altitude Adaptation in the Major Hemoglobin of Five Species of andean Dabbling Ducks}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {5},
pages = {631--650},
month = nov
}
@article{Kim:2012ez,
author = {Kim, Jinsil and Kim, Jinsil and Zhao, Keyan and Zhao, Keyan and Jiang, Peng and Jiang, Peng and Lu, Zhi-xiang and Lu, Zhi-xiang and Wang, Jinkai and Wang, Jinkai and Murray, Jeffrey C and Murray, Jeffrey C and Xing, Yi and Xing, Yi},
title = {{Transcriptome landscape of the human placenta}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {115}
}
@article{Szekely:2013bg,
author = {Sz{\'e}kely, T and Reme{\v s}, V and Reme{\v s}, V and Freckleton, R P and Freckleton, R P and Liker, A},
title = {{Why care? Inferring the evolution of complex social behaviour}},
journal = {Journal of Evolutionary Biology},
year = {2013},
pages = {n/a--n/a},
month = may
}
@article{Ost:2007us,
author = {Ost, Markus and Clark, Colin W and Kilpi, Mikael and Ydenberg, Ron},
title = {{Parental effort and reproductive skew in coalitions of brood rearing female common eiders}},
journal = {The American Naturalist},
year = {2007},
volume = {169},
number = {1},
pages = {73--86}
}
@article{Kaufman:2009bb,
author = {Kaufman, Allison B and Rosenthal, Robert},
title = {{Can you believe my eyes? The importance of interobserver reliability statistics in observations of animal behaviour}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {6},
pages = {1487--1491},
month = dec
}
@article{Kim:2010hp,
author = {Kim, K and Doi, A and Wen, B and Ng, K and Zhao, R and Cahan, P and Kim, J and Aryee, M J and Ji, H and Ehrlich, L I R and Yabuuchi, A and Takeuchi, A and Cunniff, K C and Hongguang, H and Mckinney-Freeman, S and Naveiras, O and Yoon, T J and Irizarry, R A and Jung, N and Seita, J and Hanna, J and Murakami, P and Jaenisch, R and Weissleder, R and Orkin, S H and Weissman, I L and Feinberg, A P and Daley, G Q},
title = {{Epigenetic memory in induced pluripotent stem cells}},
journal = {Nature},
year = {2010},
volume = {467},
number = {7313},
pages = {285--290},
month = jul
}
@article{Newmann:2000wx,
author = {Newmann, S and Sarin, P and Kumarasamy, N and Amalraj, E and Rogers, M and Madhivanan, P and Flanigan, T and Cu-Uvin, S and McGarvey, S and Mayer, K and Solomon, S},
title = {{Marriage, monogamy and HIV: a profile of HIV-infected women in south India}},
journal = {International Journal of Std {\&} Aids},
year = {2000},
volume = {11},
number = {4},
pages = {250--253}
}
@article{Uyeda:2009jw,
author = {Uyeda, Josef C and Arnold, Stevan J and Hohenlohe, Paul A and Mead, Louise S},
title = {{DRIFT PROMOTES SPECIATION BY SEXUAL SELECTION}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {3},
pages = {583--594},
month = mar
}
@article{Delucchi:2008to,
author = {Delucchi, Luis and Delucchi, Luis and Fraga, Martin and Fraga, Martin and Perelmuter, Karen and Perelmuter, Karen and Cidade, Esther and Cidade, Esther and Zunino, Pablo and Zunino, Pablo},
title = {{Vaginal lactic acid bacteria in healthy and ill bitches and evaluation of in vitro probiotic activity of selected isolates}},
journal = {Canadian Veterinary Journal-Revue Veterinaire Canadienne},
year = {2008},
volume = {49},
number = {10},
pages = {991--994}
}
@article{YuanYing:2007bx,
author = {Gong, YuanYing and Peng, MinSheng and Zhou, WeiPing and Zhang, Yaping},
title = {{Evolution of cd59 gene in mammals}},
journal = {Science in China Series C: Life Sciences},
year = {2007},
volume = {50},
number = {6},
pages = {773--779},
month = oct
}
@article{Tsai:2012dn,
author = {Tsai, Hung-Yin and Huang, Yen-Wen},
title = {{Image Tracking Study on Courtship Behavior of \textit{Drosophila}}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e34784},
month = apr
}
@article{Guo:2009hh,
author = {Guo, Peng and Hirano, Masayuki and Herrin, Brantley R and Li, Jianxu and Yu, Cuiling and Sadlonova, andrea and Cooper, Max D},
title = {{Dual nature of the adaptive immune system in lampreys}},
journal = {Nature},
year = {2009},
volume = {459},
number = {7248},
pages = {796--801},
month = may
}
@article{Frobius:2008fv,
author = {Frobius, andreas C and Matus, David Q and Seaver, Elaine C},
title = {{Genomic Organization and Expression Demonstrate Spatial and Temporal Hox Gene Colinearity in the Lophotrochozoan Capitella sp. I}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {12},
pages = {e4004},
month = dec
}
@article{Edmands:2009dr,
author = {Edmands, Suzanne and Northrup, Sara L and Hwang, Annmarie S},
title = {{MALADAPTED GENE COMPLEXES WITHIN POPULATIONS OF THE INTERTIDAL COPEPOD TIGRIOPUS CALIFORNICUS?}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {8},
pages = {2184--2192},
month = aug
}
@article{Dale:1999ti,
author = {Dale, J and Montgomerie, R and Michaud, D and Boag, P},
title = {{Frequency and timing of extrapair fertilisation in the polyandrous red phalarope (\emph{\textit{Phalaropus fulicarius}})}},
journal = {Behavioral Ecology and Sociobiology},
year = {1999},
volume = {46},
number = {1},
pages = {50--56}
}
@article{Pujolar:2011ft,
author = {Pujolar, J M and POGSON, G H},
title = {{Positive Darwinian selection in gamete recognition proteins of Strongylocentrotus sea urchins}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {23},
pages = {4968--4982},
month = nov
}
@article{Price:2011es,
author = {Price, J Jordan and Clapp, Mary K and Omland, Kevin E},
title = {{Where have all the trees gone? The declining use of phylogenies in animal behaviour journals}},
journal = {Animal Behaviour},
year = {2011},
volume = {81},
number = {3},
pages = {667--670},
month = mar
}
@article{Muehlenbachs:2008ii,
author = {Muehlenbachs, A and Fried, M and Lachowitzer, J and Mutabingwa, T K and Duffy, P E},
title = {{From the Cover: Natural selection of FLT1 alleles and their association with malaria resistance in utero}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {38},
pages = {14488--14491},
month = sep
}
@article{Fisher:1943wb,
author = {Fisher, RA and Corbet, AS and Williams, CB},
title = {{The relation between the number of species and the number of individuals in a random sample of an animal population}},
journal = {Journal of Animal Ecology},
year = {1943},
volume = {12},
pages = {42--58}
}
@article{Pai:2007jl,
author = {Pai, Aditi and Feil, Stacy and Yan, Guiyun},
title = {{Variation in polyandry and its fitness consequences among populations of the red flour beetle, Tribolium castaneum}},
journal = {Evolutionary Ecology},
year = {2007},
volume = {21},
number = {5},
pages = {687--702},
month = jan
}
@article{Neusser:2008hd,
author = {Neusser, Matthias A and Lindenmeyer, Maja T and Kretzler, Matthias and Cohen, Clemens D},
title = {{Genomic analysis in nephrology {\textendash} towards systems biology and systematic medicine?}},
journal = {N{\'e}phrologie {\&} Th{\'e}rapeutique},
year = {2008},
volume = {4},
number = {5},
pages = {306--311},
month = oct
}
@article{Eglen:2009wy,
author = {Eglen, SJ},
title = {{A quick guide to teaching R programming to computational biology students}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {8},
pages = {e1000482}
}
@article{Li:2008jo,
author = {Li, Xuekun and Zhao, Xinyu},
title = {{Epigenetic Regulation of Mammalian Stem Cells}},
journal = {Stem Cells and Development},
year = {2008},
volume = {17},
number = {6},
pages = {1043--1052},
month = dec
}
@article{Koenig:1998vq,
author = {Koenig, WD and Haydock, J and Stanback, MT},
title = {{Reproductive roles in the cooperatively breeding acorn woodpecker: Incest avoidance versus reproductive competition}},
journal = {The American Naturalist},
year = {1998},
volume = {151},
number = {3},
pages = {243--255}
}
@article{Haig:2010ct,
author = {Haig, D},
title = {{Colloquium Paper: Transfers and transitions: Parent-offspring conflict, genomic imprinting, and the evolution of human life history}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {suppl_1},
pages = {1731--1735},
month = jan
}
@article{Brunsberg:1996tv,
author = {Brunsberg, U and EdforsLilja, I and EdforsLilja, I and andersson, L and GUSTAFSSON, K},
title = {{Structure and organization of pig MHC class II DRB genes: Evidence for genetic exchange between loci}},
journal = {Immunogenetics},
year = {1996},
volume = {44},
number = {1},
pages = {1--8}
}
@article{Seifertova:2010jm,
author = {Seifertov{\'a}, M{\'a}ria and Seifertov{\'a}, M{\'a}ria and {\v{S}}imkov{\'a}, andrea and {\v{S}}imkov{\'a}, andrea},
title = {{Structure, diversity and evolutionary patterns of expressed MHC class IIB genes in chub (Squalius cephalus), a cyprinid fish species from Europe}},
journal = {Immunogenetics},
year = {2010},
volume = {63},
number = {3},
pages = {167--181},
month = nov
}
@article{Franceschi:2010bl,
author = {Franceschi, Nathalie and Cornet, St{\'e}phane and Bollache, Loic and Dechaume-Moncharmont, Fran{\c c}ois-Xavier and Bauer, Alexandre and Motreuil, S{\'e}bastien and Rigaud, Thierry},
title = {{VARIATION BETWEEN POPULATIONS AND LOCAL ADAPTATION IN ACANTHOCEPHALAN-INDUCED PARASITE MANIPULATION}},
journal = {Evolution},
year = {2010},
pages = {no--no},
month = apr
}
@article{Nowick:2009ku,
author = {Nowick, K and Gernat, T and Almaas, E and Stubbs, L},
title = {{Differences in human and chimpanzee gene expression patterns define an evolving network of transcription factors in brain}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {52},
pages = {22358--22363},
month = dec
}
@article{Desai:2008bk,
author = {Desai, M M and Plotkin, J B},
title = {{The Polymorphism Frequency Spectrum of Finitely Many Sites Under Selection}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {4},
pages = {2175--2191},
month = oct
}
@article{Haussinger:1996wl,
author = {Haussinger, D},
title = {{The role of cellular hydration in the regulation of cell function.}},
journal = {Biochem j},
year = {1996},
volume = {313},
pages = {697--710}
}
@article{Swain:2012cx,
author = {Swain, Martin T and Swain, Martin T and Tsai, Isheng J and Tsai, Isheng J and Assefa, Samual A and Assefa, Samual A and Newbold, Chris and Berriman, Matthew and Otto, Thomas D},
title = {{A post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs}},
journal = {Nature protocols},
year = {2012},
volume = {7},
number = {7},
pages = {1260--1284},
month = may
}
@article{Hansen:2007kr,
author = {Hansen, Michael M and Skaala, Oystein and Jensen, Lasse Fast and Bekkevold, Dorte and Mensberg, Karen-Lise D},
title = {{Gene flow, effective population size and selection at major histocompatibility complex genes: brown trout in the Hardanger Fjord, Norway}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {7},
pages = {1413--1425},
month = feb
}
@article{Sardell:2010ez,
author = {Sardell, Rebecca J and Keller, Lukas F and Arcese, Peter and Bucher, Thomas and Reid, Jane M},
title = {{Comprehensive paternity assignment: genotype, spatial location and social status in song sparrows, \textit{Melospiza} Melodia}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {19},
pages = {4352--4364},
month = aug
}
@article{Ferrarini:2013kna,
author = {Ferrarini, Marco and Moretto, Marco and Ward, Judson A and {\v{S}}urbanovski, Nada and Stevanovi{\'c}, Vladimir and Giongo, Lara and Viola, Roberto and Cavalieri, Duccio and Velasco, Riccardo and Cestaro, Alessandro and Sargent, Daniel J},
title = {{An evaluation of the PacBio RS platform for sequencing and \textit{de novo} assembly of a chloroplast genome}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {670--22},
month = oct
}
@article{Noel:2005fw,
author = {Noel, S and Angers, B and LAPOINTE, F J},
title = {{\textit{Peromyscus} populations and their Cuterebra parasites display congruent phylogeographical structure}},
journal = {Parasitology},
year = {2005},
volume = {131},
number = {2},
pages = {237--245},
month = apr
}
@article{Li:2010ft,
author = {Li, Jun and Jiang, Hui and Wong, Wing},
title = {{Modeling non-uniformity in short-read rates in RNA-Seq data}},
journal = {Genome Biology},
year = {2010},
volume = {11},
number = {5},
pages = {R50}
}
@article{Oliver:2008hj,
author = {Oliver, Matthew K and Lambin, Xavier and Cornulier, Thomas and Piertney, Stuart B},
title = {{Spatio-temporal variation in the strength and mode of selection acting on major histocompatibility complex diversity in water vole ( Arvicola terrestris) metapopulations}},
journal = {Molecular Ecology},
year = {2008},
month = dec
}
@article{Altschuler:1979du,
author = {Altschuler, E M and Altschuler, E M and Nagle, R B and Nagle, R B and Braun, E J and Braun, E J and Lindstedt, S L and Lindstedt, S L and Krutzsch, P H and Krutzsch, P H},
title = {{Morphological study of the desert heteromyid kidney with emphasis on the genus Perognathus.}},
journal = {The Anatomical record},
year = {1979},
volume = {194},
number = {3},
pages = {461--468},
month = jul
}
@article{Straub:2013jw,
author = {Straub, Shannon C K and Cronn, Richard C and Edwards, Christopher and Fishbein, Mark and Liston, Aaron},
title = {{Horizontal transfer of DNA from the mitochondrial to the plastid genome and its subsequent evolution in milkweeds (Apocynaceae).}},
journal = {Genome Biology and Evolution},
year = {2013},
volume = {5},
number = {10},
pages = {1872--1885}
}
@article{Griffith:2003fn,
author = {Blomqvist, Donald and andersson, Malte and Kupper, Clemens and Cuthill, Innes C and Kis, J{\'a}nos and Lanctot, Richard B and Sandercock, Brett K and Sz{\'e}kely, Tam{\'a}s and Wallander, Johan and Kempenaers, Bart},
title = {{Evolutionary biology (communication arising): Why do birds engage in extra-pair copulation?}},
journal = {Nature},
year = {2003},
volume = {422},
number = {6934},
pages = {833--834},
month = apr
}
@article{Minin:2008kr,
author = {Minin, V N and Suchard, M A},
title = {{Fast, accurate and simulation-free stochastic mapping}},
journal = {Philosophical Transactions of The Royal Society B-Biological Sciences},
year = {2008},
volume = {363},
number = {1512},
pages = {3985--3995},
month = dec
}
@article{Li:2012ji,
author = {Li, Yin{\"u} and Wang, Guozeng and Tian, Jian and Liu, Huifen and Yang, Huipeng and Yi, Yongzhu and Wang, Jinhui and Shi, Xiaofeng and Jiang, Feng and Yao, Bin and Zhang, Zhifang},
title = {{Transcriptome Analysis of the Silkworm (Bombyx mori) by High-Throughput RNA Sequencing}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e43713},
month = aug
}
@article{Haznedaroglu:2012bk,
author = {Haznedaroglu, Berat Z and Reeves, Darryl and Rismani-Yazdi, Hamid and Peccia, Jordan},
title = {{Optimization of \textit{de novo}transcriptome assembly from high-throughput short read sequencing data improves functional annotation for non-model organisms}},
journal = {BMC Bioinformatics},
year = {2012},
volume = {13},
number = {1},
pages = {170}
}
@article{Breed:2007ig,
journal = {Acta Zoologica},
volume = {88},
number = {3}
}
@article{Visel:2009jp,
author = {Visel, Axel and Blow, Matthew J and Li, Zirong and Zhang, Tao and Akiyama, Jennifer A and Holt, Amy and Plajzer-Frick, Ingrid and Shoukry, Malak and Wright, Crystal and Chen, Feng and Afzal, Veena and Ren, Bing and Rubin, Edward M and Pennacchio, Len A},
title = {{ChIP-seq accurately predicts tissue-specific activity of enhancers}},
journal = {Nature},
year = {2009},
volume = {457},
number = {7231},
pages = {854--858}
}
@article{Sugg:1994ue,
author = {Sugg, DW and Sugg, DW and Chesser, RK and Chesser, RK},
title = {{EFFECTIVE POPULATION SIZES WITH MULTIPLE PATERNITY}},
journal = {Genetics},
year = {1994},
volume = {137},
number = {4},
pages = {1147--1155}
}
@article{Matzkin:2012im,
author = {Matzkin, Luciano M},
title = {{Population transcriptomics of cactus host shifts in \textit{Drosophila} mojavensis.}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {10},
pages = {2428--2439},
month = may
}
@article{Blair:2009fk,
author = {Scoles, Graham and Blair, Matthew W and Torres, Monica Mu{\~n}oz and Pedraza, Fabio and Giraldo, Martha C and Buend{\'\i}a, Hector F and Hurtado, Natalia},
title = {{Development of microsatellite markers for common bean ( Phaseolus vulgarisL.) based on screening of non-enriched, small-insert genomic libraries}},
journal = {Genome / National Research Council Canada = G{\'e}nome / Conseil national de recherches Canada},
year = {2009},
volume = {52},
number = {9},
pages = {772--782},
month = sep
}
@article{Edvardsson:2000wk,
author = {Edvardsson, M and Arnqvist, G},
title = {{Copulatory courtship and cryptic female choice in red flour beetles Tribolium castaneum}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1443},
pages = {559--563}
}
@article{Strong:2004vy,
author = {Strong, AM and Rimmer, CC and McFarland, KP},
title = {{Effect of prey biomass on reproductive success and mating strategy of Bicknelus Thrush (Catharus bicknelli), a polygynandrous songbird}},
journal = {Auk},
year = {2004},
volume = {121},
number = {2},
pages = {446--451}
}
@article{Zhou:2007bf,
author = {Zhou, Xia and Zhou, Xia and Brown, Celeste J and Brown, Celeste J and Abdo, Zaid and Abdo, Zaid and Davis, Catherine C and Davis, Catherine C and Hansmann, Melanie A and Hansmann, Melanie A and Joyce, Paul and Joyce, Paul and Foster, James A and Foster, James A and Forney, Larry J and Forney, Larry J},
title = {{Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women.}},
journal = {Isme Journal},
year = {2007},
volume = {1},
number = {2},
pages = {121--133},
month = jun
}
@article{Barker:2009ig,
author = {Barker, J S F and Frydenberg, J and Gonzalez, J and Davies, H I and Ruiz, A and Sorensen, J G and Loeschcke, V},
title = {{Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian \textit{Drosophila} buzzatii}},
journal = {Heredity},
year = {2009},
volume = {102},
number = {4},
pages = {389--401},
month = jan
}
@article{Fu:1994tl,
author = {Fu, YX},
title = {{A PHYLOGENETIC ESTIMATOR OF EFFECTIVE POPULATION-SIZE OR MUTATION-RATE}},
journal = {Genetics},
year = {1994},
volume = {136},
number = {2},
pages = {685--692}
}
@article{Ravel:2011jm,
author = {Ravel, Jacques and Ravel, Jacques and Gajer, Pawel and Gajer, Pawel and Abdo, Zaid and Schneider, G Maria and Schneider, G Maria and Koenig, Sara S K and Koenig, Sara S K and McCulle, Stacey L and McCulle, Stacey L and Karlebach, Shara and Karlebach, Shara and Gorle, Reshma and Gorle, Reshma and Russell, Jennifer and Russell, Jennifer and Tacket, Carol O and Tacket, Carol O and Brotman, Rebecca M and Brotman, Rebecca M and Davis, Catherine C and Ault, Kevin and Ault, Kevin and Peralta, Ligia and Peralta, Ligia and Forney, Larry J},
title = {{Vaginal microbiome of reproductive-age women.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108 Suppl 1},
pages = {4680--4687},
month = mar
}
@article{Rajpurohit:2013he,
author = {Rajpurohit, Subhash and Rajpurohit, Subhash and Oliveira, C{\'a}ssia C and Oliveira, C{\'a}ssia C and Etges, William J and Gibbs, Allen G},
title = {{Functional genomic and phenotypic responses to desiccation in natural populations of a desert drosophilid}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = mar
}
@article{Wedekind:1994vl,
author = {Wedekind, C and Wedekind, C},
title = {{MATE CHOICE AND MATERNAL SELECTION FOR SPECIFIC PARASITE RESISTANCES BEFORE, DURING AND AFTER FERTILIZATION}},
journal = {Philosophical Transactions of The Royal Society of London Series B-Biological Sciences},
year = {1994},
volume = {346},
number = {1317},
pages = {303--311}
}
@article{Gefen:2009jg,
author = {Gefen, Eran and Gefen, Eran and Gibbs, Allen G},
title = {{Interactions Between Environmental Stress and Male Mating Success May Enhance Evolutionary Divergence of Stress-Resistant \textit{Drosophila} Populations}},
journal = {Evolution},
volume = {63},
pages = {1653--1659}
}
@article{Zanette:2011bj,
author = {Zanette, L Y and White, A F and Allen, M C and Clinchy, M},
title = {{Perceived Predation Risk Reduces the Number of offspring Songbirds Produce per Year}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6061},
pages = {1398--1401},
month = dec
}
@article{Cantarel:2008jo,
author = {Cantarel, Brandi L and Korf, Ian and Robb, Sofia M C and Parra, Genis and Ross, Eric and Moore, Barry and Holt, Carson and S{\'a}nchez Alvarado, Alejandro and Yandell, Mark},
title = {{MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.}},
journal = {Genome Research},
year = {2008},
volume = {18},
number = {1},
pages = {188--196},
month = jan
}
@article{Anonymous:2008hx,
author = {Briffa, Mark and Mowles, Sophie L},
title = {{Hermit crabs}},
journal = {Current Biology},
year = {2008},
volume = {18},
number = {4},
pages = {R144--R146},
month = feb
}
@article{Grabherr:2011jb,
author = {Grabherr, Manfred G and Haas, Brian J and Yassour, Moran and Levin, Joshua Z and Thompson, Dawn A and Amit, Ido and Adiconis, Xian and Fan, Lin and Raychowdhury, Raktima and Zeng, Qiandong and Chen, Zehua and Mauceli, Evan and Hacohen, Nir and Gnirke, andreas and Rhind, Nicholas and di Palma, Federica and Birren, Bruce W and Nusbaum, Chad and Lindblad-Toh, Kerstin and Friedman, Nir and Regev, Aviv},
title = {{Full-length transcriptome assembly from RNA-Seq data without a reference genome.}},
journal = {Nature Biotechnology},
year = {2011},
volume = {29},
number = {7},
pages = {644--652},
month = jul
}
@article{Johnstone:2010dv,
author = {Johnstone, R A and Cant, M A},
title = {{The evolution of menopause in cetaceans and humans: the role of demography}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1701},
pages = {3765--3771},
month = nov
}
@article{Lozupone:2005gn,
author = {Lozupone, C and Knight, R},
title = {{UniFrac: a new phylogenetic method for comparing microbial communities}},
journal = {Applied and Environmental Microbiology},
year = {2005},
volume = {71},
number = {12},
pages = {8228--8235}
}
@article{Walbot:2009ek,
author = {Walbot, Virginia},
title = {{Are we training pit bulls to review our manuscripts?}},
journal = {Journal of Biology},
year = {2009},
volume = {8},
number = {3},
pages = {24}
}
@article{Li:2009kf,
author = {Li, S-J and Peng, M and Li, H and Liu, B-S and Wang, C and Wu, J-R and Li, Y-X and Zeng, R},
title = {{Sys-BodyFluid: a systematical database for human body fluid proteome research}},
journal = {Nucleic Acids Research},
year = {2009},
volume = {37},
number = {Database},
pages = {D907--D912},
month = jan
}
@article{Gibson:2013ia,
author = {Gibson, L and Gibson, L and Lynam, A J and Lynam, A J and Bradshaw, C J A and Bradshaw, C J A and He, F and He, F and Bickford, D P and Bickford, D P and Woodruff, D S and Woodruff, D S and Bumrungsri, S and Bumrungsri, S and Laurance, W F and Laurance, W F},
title = {{Near-Complete Extinction of Native Small Mammal Fauna 25 Years After Forest Fragmentation}},
journal = {Science (New York, NY)},
year = {2013},
volume = {341},
number = {6153},
pages = {1508--1510},
month = sep
}
@article{Voronin:2009et,
author = {Voronin, Yegor and Holte, Sarah and Overbaugh, Julie and Emerman, Michael},
title = {{Genetic Drift of HIV Populations in Culture}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {3},
pages = {e1000431},
month = mar
}
@article{LindstrXFM:2002gl,
author = {Lindstr X000F6 M, Jan and Coulson, Tim and Kruuk, Loeske and Forchhammer, Mads and Coltman, Dave and Clutton-Brock, Tim},
title = {{Sex-ratio variation in Soay sheep}},
journal = {Behavioral Ecology and Sociobiology},
year = {2002},
volume = {53},
number = {1},
pages = {25--30},
month = dec
}
@article{Burland:2001tt,
author = {Burland, TM and Barratt, EM and Nichols, RA and Racey, PA},
title = {{Mating patterns, relatedness and the basis of natal philopatry in the brown long-eared bat, Plecotus auritus}},
journal = {Molecular Ecology},
year = {2001},
volume = {10},
number = {5},
pages = {1309--1321}
}
@article{Linnen:2013ir,
author = {Linnen, Catherine R and Poh, Yu-Ping and Peterson, Brant K and Barrett, Rowan D H and Larson, Joanna G and Jensen, Jeffrey D and Hoekstra, Hopi E},
title = {{Adaptive evolution of multiple traits through multiple mutations at a single gene.}},
journal = {Science (New York, NY)},
year = {2013},
volume = {339},
number = {6125},
pages = {1312--1316},
month = mar
}
@article{LAURENT:2011ic,
author = {LAURENT, R and TOUPANCE, B and CHAIX, R},
title = {{Non-random mate choice in humans: insights from a genome scan.}},
journal = {Molecular Ecology},
year = {2011},
month = nov
}
@article{Mlynarski:2008da,
author = {Mlynarski, E E and Obergfell, C J and Rens, W and O rsquo Brien, P C M and Ramsdell, C M and Dewey, M J and O rsquo Neill, M J and O rsquo Neill, R J},
title = {{\emph{\textit{Peromyscus} \textit{maniculatus}} {\&}ndash; \emph{Mus musculus }chromosome homology map derived from reciprocal cross species chromosome painting}},
journal = {Cytogenetic and Genome Research},
year = {2008},
volume = {121},
number = {3-4},
pages = {288--292}
}
@article{Jones:2002hv,
author = {Jones, A G},
title = {{Topping off: A mechanism of first-male sperm precedence in a vertebrate}},
journal = {Proceedings of the National Academy of Sciences},
year = {2002},
volume = {99},
number = {4},
pages = {2078--2081},
month = feb
}
@article{Arnqvist:1997wr,
author = {Arnqvist, G},
title = {{The evolution of animal genitalia: Distinguishing between hypotheses by single species studies}},
journal = {Biological Journal of The Linnean Society},
year = {1997},
volume = {60},
number = {3},
pages = {365--379}
}
@article{vanHoute:2013ew,
author = {van Houte, Stineke and Ros, Vera I D and van Oers, Monique M},
title = {{Walking with insects: molecular mechanisms behind parasitic manipulation of host behaviour}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {13},
pages = {3458--3475},
month = jun
}
@article{Yang:2009uj,
author = {Yang, Ziheng},
title = {{pamlDOC}},
year = {2009},
pages = {1--67},
month = sep
}
@article{Westerman:2012cl,
author = {Westerman, Erica L and Westerman, Erica L and Hodgins-Davis, andrea and Hodgins-Davis, andrea and Dinwiddie, April and Dinwiddie, April and Monteiro, Ant{\'o}nia and Monteiro, Ant{\'o}nia},
title = {{Biased learning affects mate choice in a butterfly.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {27},
pages = {10948--10953},
month = jul
}
@article{BLONDEL:1985vw,
author = {BLONDEL, J and BLONDEL, J},
title = {{BREEDING STRATEGIES OF THE BLUE TIT AND COAL TIT (PARUS) IN MAINLAND AND ISLAND MEDITERRANEAN HABITATS - A COMPARISON}},
journal = {Journal of Animal Ecology},
year = {1985},
volume = {54},
number = {2},
pages = {531--556}
}
@article{Simonson:2010kg,
author = {Simonson, T S and Yang, Y and Huff, C D and Yun, H and Qin, G and Witherspoon, D J and Bai, Z and Lorenzo, F R and Xing, J and Jorde, L B and Prchal, J T and Ge, R},
title = {{Genetic Evidence for High-Altitude Adaptation in Tibet}},
journal = {Science (New York, NY)},
year = {2010},
volume = {329},
number = {5987},
pages = {72--75},
month = jul
}
@article{Martin:2007ue,
author = {Martin, Lynn B and Weil, Zachary M and Nelson, Randy J},
title = {{Immune defense and reproductive pace of life in \textit{Peromyscus} mice}},
journal = {Ecology},
year = {2007},
volume = {88},
number = {10},
pages = {2516--2528}
}
@article{Klepsatel:2013es,
author = {Klepsatel, Peter and Klepsatel, Peter and G{\'a}likov{\'a}, Martina and G{\'a}likov{\'a}, Martina and De Maio, Nicola and De Maio, Nicola and Huber, Christian D and Huber, Christian D and Schl{\"o}tterer, Christian and Flatt, Thomas and Flatt, Thomas},
title = {{VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER}},
journal = {Evolution},
year = {2013},
pages = {n/a--n/a},
month = aug
}
@article{Gompert:2013ik,
author = {Gompert, Zachariah and Comeault, Aaron A and Farkas, Timothy E and Feder, Jeffrey L and Parchman, Thomas L and Buerkle, Alex C and Nosil, Patrik},
title = {{Experimental evidence for ecological selection on genome variation in the wild}},
journal = {Ecology Letters},
year = {2013},
pages = {n/a--n/a},
month = dec
}
@article{KosakovskyPond:2006hk,
author = {Kosakovsky Pond, S L},
title = {{Automated Phylogenetic Detection of Recombination Using a Genetic Algorithm}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {23},
number = {10},
pages = {1891--1901},
month = jul
}
@article{Thompson:2012jc,
author = {Thompson, CK and Meitzen, J and Replogle, K and Drnevich, J},
title = {{Seasonal Changes in Patterns of Gene Expression in Avian Song Control Brain Regions}},
journal = {PLOS ONE},
year = {2012}
}
@article{Berriman:2009km,
author = {Berriman, Matthew and Haas, Brian J and Loverde, Philip T and Wilson, R Alan and Dillon, Gary P and Cerqueira, Gustavo C and Mashiyama, Susan T and Al-Lazikani, Bissan and andrade, Luiza F and Ashton, Peter D and Aslett, Martin A and Bartholomeu, Daniella C and Blandin, Gaelle and Caffrey, Conor R and Coghlan, Avril and Coulson, Richard and Day, Tim A and Delcher, Art and Demarco, Ricardo and Djikeng, Appolinaire and Eyre, Tina and Gamble, John A and Ghedin, Elodie and Gu, Yong and Hertz-Fowler, Christiane and Hirai, Hirohisha and Hirai, Yuriko and Houston, Robin and Ivens, Alasdair and Johnston, David A and Lacerda, Daniela and Macedo, Camila D and Mcveigh, Paul and Ning, Zemin and Oliveira, Guilherme and Overington, John P and Parkhill, Julian and Pertea, Mihaela and Pierce, Raymond J and Protasio, Anna V and Quail, Michael A and Rajandream, Marie-Ad{\`e}le and Rogers, Jane and Sajid, Mohammed and Salzberg, Steven L and Stanke, Mario and Tivey, Adrian R and White, Owen and Williams, David L and Wortman, Jennifer and Wu, Wenjie and Zamanian, Mostafa and Zerlotini, Adhemar and Fraser-Liggett, Claire M and Barrell, Barclay G and El-Sayed, Najib M},
title = {{The genome of the blood fluke Schistosoma mansoni}},
journal = {Nature},
year = {2009},
volume = {460},
number = {7253},
pages = {352--358},
month = jul
}
@article{Hale:2008il,
author = {Hale, Rebecca E},
title = {{Evidence that context-dependent mate choice for parental care mirrors benefits to offspring}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {4},
pages = {1283--1290},
month = apr
}
@article{Storz:2008ev,
author = {Storz, J F and Kelly, J K},
title = {{Effects of Spatially Varying Selection on Nucleotide Diversity and Linkage Disequilibrium: Insights From Deer Mouse Globin Genes}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {1},
pages = {367--379},
month = aug
}
@article{Petsko:2009ff,
author = {Petsko, Gregory A},
title = {{Wimps? What wimps?}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {7},
pages = {109}
}
@article{Myllykangas:2011bu,
author = {Myllykangas, Samuel and Myllykangas, Samuel and Buenrostro, Jason D and Buenrostro, Jason D and Natsoulis, Georges and Natsoulis, Georges and Bell, John M and Bell, John M and Ji, Hanlee P and Ji, Hanlee P},
title = {{Efficient targeted resequencing of human germline and cancer genomes by oligonucleotide-selective sequencing}},
journal = {Nature Biotechnology},
year = {2011},
volume = {29},
number = {11},
pages = {1024--1027},
month = oct
}
@article{Takeuchi:2009fz,
author = {Takeuchi, Fumihiko and McGinnis, Ralph and Bourgeois, Stephane and Barnes, Chris and Eriksson, Niclas and Soranzo, Nicole and Whittaker, Pamela and Ranganath, Venkatesh and Kumanduri, Vasudev and McLaren, William and Holm, Lennart and Lindh, Jonatan and Rane, anders and Wadelius, Mia and Deloukas, Panos},
title = {{A Genome-Wide Association Study Confirms VKORC1, CYP2C9, and CYP4F2 as Principal Genetic Determinants of Warfarin Dose}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {3},
pages = {e1000433},
month = mar
}
@article{Vasquez:2008gn,
author = {Vasquez, Gissella M and Silverman, Jules},
title = {{Intraspecific aggression and colony fusion in the Argentine ant}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {2},
pages = {583--593},
month = feb
}
@article{Gautier:2012ce,
author = {Gautier, Mathieu and Gautier, Mathieu and Gharbi, Karim and Gharbi, Karim and Cezard, Timothee and Cezard, Timothee and Foucaud, Julien and Foucaud, Julien and Kerdelhu{\'e}, Carole and Kerdelhu{\'e}, Carole and Pudlo, Pierre and Pudlo, Pierre and Cornuet, Jean-Marie and Cornuet, Jean-Marie and Estoup, Arnaud and Estoup, Arnaud},
title = {{The effect of RAD allele dropout on the estimation of genetic variation within and between populations}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = oct
}
@article{Sackton:2009hf,
author = {Sackton, Timothy B and Clark, andrew G},
title = {{Comparative profiling of the transcriptional response to infection in two species of \textit{Drosophila} by short-read cDNA sequencing}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {259}
}
@article{Anonymous:XOuI1ml0,
title = {{Directions_to_Motte_Reserve_V2}}
}
@article{Dunbar:2001uc,
author = {Dunbar, J and Ticknor, LO and Kuske, CR},
title = {{Phylogenetic specificity and reproducibility and new method for analysis of terminal restriction fragment profiles of 16S rRNA genes from bacterial communities}},
journal = {Applied and Environmental Microbiology},
year = {2001},
volume = {67},
number = {1},
pages = {190--197}
}
@article{Gopinathan:2010en,
author = {Gopinathan, M A and Pichan, G and Sharma, B},
title = {{Role of Dehydration in Heat Stress-Induced Variations in Mental Performance}},
journal = {dx.doi.org},
year = {2010},
volume = {43},
number = {1},
pages = {15--17},
month = aug
}
@article{Anonymous:waci-l5V,
title = {{Juan Parra DDIG 2}},
year = {2006},
pages = {1},
month = nov
}
@article{Stanback:2002vm,
author = {Stanback, M and Richardson, DS and Boix-Hinzen, C and Mendelsohn, J},
title = {{Genetic monogamy in Monteiro's hornbill, Tockus monteiri}},
journal = {Animal Behaviour},
year = {2002},
volume = {63},
pages = {787--793}
}
@article{Hedrick:2009hn,
author = {Hedrick, P W},
title = {{Wolf of a different colour}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {6},
pages = {435--436},
month = jul
}
@article{Carninci:2003iy,
author = {Carninci, P},
title = {{Targeting a Complex Transcriptome: The Construction of the Mouse Full-Length cDNA Encyclopedia}},
journal = {Genome Research},
year = {2003},
volume = {13},
number = {6},
pages = {1273--1289},
month = jun
}
@article{Cournault:2009jk,
author = {Cournault, Laurent and Biseau, Jean-Christophe},
title = {{Hierarchical perception of fertility signals and nestmate recognition cues in two dolichoderine ants}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {11},
pages = {1635--1641},
month = may
}
@article{Spira:2004uj,
author = {Spira, A and Beane, J and Shah, V and Liu, G and Schembri, F and Schembri, F and Yang, XM and Yang, XM and Palma, J and Palma, J and Brody, JS and Brody, JS},
title = {{Effects of cigarette smoke on the human airway epithelial cell transcriptome}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2004},
volume = {101},
number = {27},
pages = {10143--10148}
}
@article{Saino:1997vo,
author = {Saino, N and Primmer, CR and Ellegren, H and Moller, AP},
title = {{An experimental study of paternity and tail ornamentation in the barn swallow (Hirundo rustica)}},
journal = {Evolution},
year = {1997},
volume = {51},
number = {2},
pages = {562--570}
}
@article{Hindmarch:2006hz,
author = {Hindmarch, C},
title = {{A comprehensive description of the transcriptome of the hypothalamoneurohypophyseal system in euhydrated and dehydrated rats}},
journal = {Proceedings of the National Academy of Sciences},
year = {2006},
volume = {103},
number = {5},
pages = {1609--1614},
month = jan
}
@article{McNabney:2012kz,
author = {McNabney, Daniel R and McNabney, Daniel R},
title = {{THE GENETIC BASIS OF BEHAVIORAL ISOLATION BETWEEN DROSOPHILA MAURITIANA AND D. SECHELLIA}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = feb
}
@article{Jones:2012hg,
author = {Jones, Daniel C and Jones, Daniel C and Ruzzo, Walter L and Ruzzo, Walter L and Peng, Xinxia and Peng, Xinxia and Katze, Michael G and Katze, Michael G},
title = {{A new approach to bias correction in RNA-Seq.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {7},
pages = {921--928},
month = apr
}
@article{Bandawe:2008hz,
author = {Bandawe, Gama P and Martin, Darren P and Treurnicht, Florette and Mlisana, Koleka and Karim, Salim and Williamson, Carolyn and {The CAPRISA 002 Acute Infection Study Team}},
title = {{Conserved positive selection signals in gp41 across multiple subtypes and difference in selection signals detectable in gp41 sequences sampled during acute and chronic HIV-1 subtype C infection}},
journal = {Virology Journal},
year = {2008},
volume = {5},
number = {1},
pages = {141}
}
@article{TiemannBoege:2000iu,
author = {Tiemann-Boege, I},
title = {{Molecular Phylogenetics of the \textit{Peromyscus} boylii Species Group (Rodentia: Muridae) Based on Mitochondrial Cytochrome b Sequences}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2000},
volume = {16},
number = {3},
pages = {366--378},
month = sep
}
@article{RAMOSONSINS:2008ca,
author = {RAMOS-ONSINS, SEBASTI{\'A}N E and MOUSSET, SYLVAIN and MITCHELL-OLDS, THOMAS and STEPHAN, WOLFGANG},
title = {{Population genetic inference using a fixed number of segregating sites: a reassessment}},
journal = {Genetical Research},
year = {2008},
volume = {89},
number = {04},
month = jan
}
@article{Russell:2000tz,
author = {Russell, E and Rowley, I},
title = {{Demography and social organisation of the red-winged fairy-wren, Malurus elegans}},
journal = {Australian Journal of Zoology},
year = {2000},
volume = {48},
number = {2},
pages = {161--200}
}
@article{Fung:2004jv,
author = {Fung, Kim Y C and Glode, L Michael and Green, Spencer and Duncan, Mark W},
title = {{A comprehensive characterization of the peptide and protein constituents of human seminal fluid}},
journal = {The Prostate},
year = {2004},
volume = {61},
number = {2},
pages = {171--181}
}
@article{BUTLIN:1995vf,
author = {BUTLIN, RK},
title = {{REINFORCEMENT - AN IDEA EVOLVING}},
journal = {Trends In Ecology {\&} Evolution},
year = {1995},
volume = {10},
number = {11},
pages = {432--434}
}
@article{Alcaide:2010bw,
author = {Alcaide, Miguel},
title = {{On the relative roles of selection and genetic drift in shaping MHC variation}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {18},
pages = {3842--3844},
month = sep
}
@article{Galvez:2010dn,
author = {Galvez, S and Diaz, D and Hernandez, P and Esteban, F J and Caballero, J A and Dorado, G},
title = {{Next-generation bioinformatics: using many-core processor architecture to develop a web service for sequence alignment}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {5},
pages = {683--686},
month = feb
}
@article{Best:2010dg,
author = {Best, Alex and White, andy and Boots, Mike},
title = {{RESISTANCE IS FUTILE BUT TOLERANCE CAN EXPLAIN WHY PARASITES DO NOT ALWAYS CASTRATE THEIR HOSTS}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {2},
pages = {348--357},
month = feb
}
@article{Sepil:2012gx,
author = {Sepil, Irem and Sepil, Irem and Lachish, Shelly and Lachish, Shelly and Sheldon, Ben C},
title = {{Mhc-linked survival and lifetime reproductive success in a wild population of great tits}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = nov
}
@article{Cutrera:2010kg,
author = {Cutrera, A P and Zenuto, R R and Luna, F and Antenucci, C D},
title = {{Mounting a specific immune response increases energy expenditure of the subterranean rodent \textit{Ctenomys} talarum (tuco-tuco): implications for intraspecific and interspecific variation in immunological traits}},
journal = {Journal of Experimental Biology},
year = {2010},
volume = {213},
number = {5},
pages = {715--724},
month = feb
}
@article{Sneddon:2011gx,
author = {Sneddon, Lynne U and Sneddon, Lynne U and Schmidt, Rupert and Schmidt, Rupert and Fang, Yongxiang and Fang, Yongxiang and Cossins, andrew R and Cossins, andrew R},
title = {{Molecular correlates of social dominance: a novel role for ependymin in aggression.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {4},
pages = {e18181}
}
@article{Yamane:1998wc,
author = {Yamane, A and Yamane, A},
title = {{Male reproductive tactics and reproductive success of the group-living feral cat (Felis catus)}},
journal = {Behavioural Processes},
year = {1998},
volume = {43},
number = {3},
pages = {239--249}
}
@article{Anonymous:2003wc,
title = {{Temperature Tolerance and Water Balance in Feral and Domestic Honey Bees, Apis mellifera L.}},
year = {2003},
pages = {1--5},
month = may
}
@article{Amisiner:2009ta,
author = {Amisiner},
title = {{Microsoft PowerPoint - Korn_Illumina_090706}},
year = {2009},
pages = {1--39},
month = jul
}
@article{CluttonBrock:2009es,
author = {Clutton-Brock, Tim},
title = {{Sexual selection in females}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {1},
pages = {3--11},
month = jan
}
@article{Louden:2009da,
author = {Louden, Jonathan D},
title = {{Regulation of fluid and electrolyte balance}},
journal = {Anaesthesia and Intensive Care Medicine},
year = {2009},
volume = {10},
number = {6},
pages = {279--285},
month = jun
}
@article{Kadota:2012gh,
author = {Kadota, Koji and Nishiyama, Tomoaki and Shimizu, Kentaro},
title = {{A normalization strategy for comparing tag count data}},
journal = {Algorithms for Molecular Biology},
year = {2012},
volume = {7},
number = {1},
pages = {5},
month = apr
}
@article{Herndon:1997vf,
author = {Herndon, LA and Chapman, T and Kalb, JM and Lewin, S and Partridge, L and Wolfner, MF},
title = {{Mating and hormonal triggers regulate accessory gland gene expression in male \textit{Drosophila}}},
journal = {Journal of Insect Physiology},
year = {1997},
volume = {43},
number = {12},
pages = {1117--1123}
}
@article{GuerreroBosagna:2010ea,
author = {Guerrero-Bosagna, Carlos and Settles, Matthew and Lucker, Ben and Skinner, Michael K},
title = {{Epigenetic Transgenerational Actions of Vinclozolin on Promoter Regions of the Sperm Epigenome}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {9},
pages = {e13100},
month = sep
}
@article{Richardson:2001vh,
author = {Richardson, DS and Jury, FL and Blaakmeer, K and Komdeur, J and Burke, T},
title = {{Parentage assignment and extra-group paternity in a cooperative breeder: the Seychelles warbler (Acrocephalus sechellensis)}},
journal = {Molecular Ecology},
year = {2001},
volume = {10},
number = {9},
pages = {2263--2273}
}
@article{Salari:2012hr,
author = {Salari, Raheleh and Salari, Raheleh and Wojtowicz, Damian and Wojtowicz, Damian and Zheng, Jie and Zheng, Jie and Levens, David and Levens, David and Pilpel, Yitzhak and Pilpel, Yitzhak and Przytycka, Teresa M and Przytycka, Teresa M},
title = {{Teasing Apart Translational and Transcriptional Components of Stochastic Variations in Eukaryotic Gene Expression}},
journal = {PLOS Computational Biology},
year = {2012},
volume = {8},
number = {8},
pages = {e1002644},
month = aug
}
@article{Jiang:2009et,
author = {Jiang, Xiaowei and Fares, Mario A},
title = {{IDENTIFYING COEVOLUTIONARY PATTERNS IN HUMAN LEUKOCYTE ANTIGEN (HLA) MOLECULES}},
journal = {Evolution},
year = {2009},
month = dec
}
@article{Wang:2012ht,
author = {Wang, Zi Long and Wang, Zi Long and Liu, Ting Ting and Liu, Ting Ting and Huang, Zachary Y and Huang, Zachary Y and Wu, Xiao Bo and Wu, Xiao Bo and Yan, Wei Yu and Yan, Wei Yu and Zeng, Zhi Jiang and Zeng, Zhi Jiang},
title = {{Transcriptome Analysis of the Asian Honey Bee Apis cerana cerana}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {10},
pages = {e47954},
month = oct
}
@article{Poulin:2012cq,
author = {Poulin, R and Poulin, R},
title = {{Parasite manipulation of host personality and behavioural syndromes}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {18--26},
month = dec
}
@article{ArisBrosou:1996tn,
author = {ArisBrosou, S and ArisBrosou, S and Excoffier, L},
title = {{The impact of population expansion and mutation rate heterogeneity on DNA sequence polymorphism}},
journal = {Molecular Biology and Evolution},
year = {1996},
volume = {13},
number = {3},
pages = {494--504}
}
@article{Zeisset:2009jp,
author = {Zeisset, I and Beebee, T J C},
title = {{Molecular characterization of major histocompatibility complex class II alleles in the common frog, Rana temporaria}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {3},
pages = {738--745},
month = may
}
@article{Gavin:1998wg,
author = {Gavin, TA and Reynolds, RT and Joy, SM and Leslie, D and May, B},
title = {{Genetic evidence for low frequency of extra-pair fertilizations in northern Goshawks}},
journal = {The Condor},
year = {1998},
volume = {100},
number = {3},
pages = {556--560}
}
@article{Birol:2009ia,
author = {Birol, I and Jackman, S D and Nielsen, C B and Qian, J Q and Varhol, R and Stazyk, G and Morin, R D and Zhao, Y and Hirst, M and Schein, J E and Horsman, D E and Connors, J M and Gascoyne, R D and Marra, M A and Jones, S J M},
title = {{\textit{De novo} transcriptome assembly with ABySS}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {21},
pages = {2872--2877},
month = oct
}
@article{Ormond:2011en,
author = {Ormond, Emma L and Ormond, Emma L and Thomas, Alison P M and Thomas, Alison P M and Pell, Judith K and Pell, Judith K and Freeman, Stephen N and Freeman, Stephen N and Roy, Helen E and Roy, Helen E},
title = {{Avoidance of a generalist entomopathogenic fungus by the ladybird, Coccinella septempunctata}},
journal = {FEMS microbiology ecology},
year = {2011},
volume = {77},
number = {2},
pages = {229--237},
month = may
}
@article{Kim:2011dk,
author = {Kim, Eun Bae and Kim, Eun Bae and Fang, Xiaodong and Fushan, Alexey A and Fushan, Alexey A and Huang, Zhiyong and Huang, Zhiyong and Lobanov, Alexei V and Lobanov, Alexei V and Han, Lijuan and Han, Lijuan and Marino, Stefano M and Marino, Stefano M and Sun, Xiaoqing and Sun, Xiaoqing and Turanov, Anton A and Turanov, Anton A and Yang, Pengcheng and Yang, Pengcheng and Yim, Sun Hee and Yim, Sun Hee and Zhao, Xiang and Zhao, Xiang and Kasaikina, Marina V and Kasaikina, Marina V and Stoletzki, Nina and Peng, Chunfang and Peng, Chunfang and Polak, Paz and Polak, Paz and Xiong, Zhiqiang and Xiong, Zhiqiang and Kiezun, Adam and Kiezun, Adam and Zhu, Yabing and Zhu, Yabing and Chen, Yuanxin and Chen, Yuanxin and Kryukov, Gregory V and Kryukov, Gregory V and Zhang, Qiang and Zhang, Qiang and Peshkin, Leonid and Peshkin, Leonid and Yang, Lan and Yang, Lan and Bronson, Roderick T and Bronson, Roderick T and Buffenstein, Rochelle and Buffenstein, Rochelle and Wang, Bo and Wang, Bo and Han, Changlei and Han, Changlei and Li, Qiye and Li, Qiye and Chen, Li and Chen, Li and Zhao, Wei and Zhao, Wei and Sunyaev, Shamil R and Park, Thomas J and Park, Thomas J and Zhang, Guojie and Wang, Jun and Gladyshev, Vadim N and Gladyshev, Vadim N},
title = {{Genome sequencing reveals insights into physiology and longevity of the naked mole rat}},
journal = {Nature},
year = {2011},
volume = {479},
number = {7372},
pages = {223--227},
month = oct
}
@article{Lank:1987ua,
author = {Lank, DB and Smith, CM and Smith, CM},
title = {{CONDITIONAL LEKKING IN RUFF (PHILOMACHUS-PUGNAX)}},
journal = {Behavioral Ecology and Sociobiology},
year = {1987},
volume = {20},
number = {2},
pages = {137--145}
}
@article{Zhang:2009it,
author = {Zhang, H and Lund, O and Nielsen, M},
title = {{The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {10},
pages = {1293--1299},
month = may
}
@article{Paris:2010cf,
author = {Paris, Margot and Boyer, S{\'e}bastien and Bonin, Aurelie and Collado, Amandine and David, Jean-Philippe and Despres, Laurence},
title = {{Genome scan in the mosquito Aedes rusticus: population structure and detection of positive selection after insecticide treatment}},
journal = {Molecular Ecology},
year = {2009},
volume = {19},
number = {2},
pages = {325--337},
month = dec
}
@article{Liebgold:2006ie,
author = {Liebgold, Eric B and Cabe, Paul R and Jaeger, Robert G and Leberg, Paul L},
title = {{Multiple paternity in a salamander with socially monogamous behaviour}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {13},
pages = {4153--4160},
month = aug
}
@article{Gotzek:2007bi,
author = {Gotzek, Dietrich and Gotzek, Dietrich and Shoemaker, D Dewayne and Shoemaker, D Dewayne and Ross, Kenneth G. and Ross, Kenneth G.},
title = {{Molecular Variation at a Candidate Gene Implicated in the Regulation of Fire Ant Social Behavior}},
journal = {PLOS ONE},
year = {2007},
volume = {2},
number = {11}
}
@article{Hubert:2010cm,
author = {Hubert, Sophie and Higgins, Brent and Borza, Tudor and Bowman, Sharen},
title = {{Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua)}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {191}
}
@article{Schad:2011kc,
author = {Schad, J and Dechmann, D K N and Dechmann, D K N and Voigt, C C and Voigt, C C and Sommer, S},
title = {{MHC class II DRB diversity, selection pattern and population structure in a neotropical bat species, \emph{Noctilio albiventris}}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {2},
pages = {115--126},
month = aug
}
@article{Anonymous:Pm3zt_1r,
title = {{phylosim}},
year = {2011},
pages = {1--593},
month = mar
}
@article{Lie:2010jj,
author = {Lie, Hanne C and Rhodes, Gillian and Simmons, Leigh W},
title = {{Is genetic diversity associated with mating success in humans?}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {4},
pages = {903--909},
month = apr
}
@article{Parsonnet:1991du,
author = {Parsonnet, J and Friedman, G D and Vandersteen, D P and Chang, Y and Vogelman, J H and Orentreich, N and Sibley, R K},
title = {{Helicobacter pylori infection and the risk of gastric carcinoma.}},
journal = {The New England journal of medicine},
year = {1991},
volume = {325},
number = {16},
pages = {1127--1131},
month = oct
}
@article{Takada:1998wj,
author = {Takada, T and Kikkawa, Y and Yonekawa, H and Amano, T and Amano, T},
title = {{Analysis of goat MHC class II DRA and DRB genes: identification of the expressed gene and new DRB alleles}},
journal = {Immunogenetics},
year = {1998},
volume = {48},
number = {6},
pages = {408--412}
}
@article{Kumar:2010fi,
author = {Kumar, Sujai and Blaxter, Mark L},
title = {{Comparing \textit{de novo} assemblers for 454 transcriptome data}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {571}
}
@article{Soltis:2002ef,
author = {Soltis, P S},
title = {{Rate heterogeneity among lineages of tracheophytes: Integration of molecular and fossil data and evidence for molecular living fossils}},
journal = {Proceedings of the National Academy of Sciences},
year = {2002},
volume = {99},
number = {7},
pages = {4430--4435},
month = mar
}
@article{Langmore:2007fu,
author = {Langmore, N E and Adcock, G J and Kilner, R M},
title = {{The spatial organization and mating system of Horsfield's bronze-cuckoos, Chalcites basalis}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {3},
pages = {403--412},
month = sep
}
@article{Nonacs:2000wa,
author = {Nonacs, P and Nonacs, P},
title = {{Measuring and using skew in the study of social behavior and evolution}},
journal = {The American Naturalist},
year = {2000},
volume = {156},
number = {6},
pages = {577--589}
}
@article{Staples:2009ua,
author = {Staples},
title = {{An evolutionary genome scan reveals the targets of natural selection for elongated life span in mammals}},
year = {2009},
pages = {1--33},
month = nov
}
@article{Pires:2011dy,
author = {Pires, Marcelo N. and Pires, Marcelo N. and Bassar, Ronald D. and Bassar, Ronald D. and McBride, Kevin E. and McBride, Kevin E. and Regus, John U. and Regus, John U. and Garland, Theodore Jr and Garland, Theodore Jr and Reznick, David N.},
title = {{Why do placentas evolve? An evaluation of the life-history facilitation hypothesis in the fish genus Poeciliopsis}},
journal = {Functional Ecology},
year = {2011},
volume = {25},
number = {4},
pages = {757--768}
}
@article{Gubernick:1993ti,
author = {Gubernick, David J and Gubernick, David J and Nordby, J Cully and Nordby, J Cully},
title = {{Mechanisms of sexual fidelity in the monogamous California mouse, \emph{\textit{Peromyscus} \textit{californicus}}}},
journal = {Behavioral Ecology and Sociobiology},
year = {1993},
volume = {32},
number = {3},
pages = {211--219}
}
@article{CHARLESWORTH:2010gn,
author = {CHARLESWORTH, D},
title = {{Don't forget the ancestral polymorphisms.}},
journal = {Heredity},
year = {2010},
volume = {105},
number = {6},
pages = {509--510},
month = dec
}
@article{Doherty:2005ke,
author = {Doherty, Irene A and Padian, Nancy S and Marlow, Cameron and Aral, Sevgi O},
title = {{Determinants and Consequences of Sexual Networks as They Affect the Spread of Sexually Transmitted Infections}},
journal = {The Journal of infectious diseases},
year = {2005},
volume = {191},
number = {s1},
pages = {S42--S54},
month = feb
}
@article{Kuijper:2012ft,
author = {Kuijper, Bram and Pen, Ido and Weissing, Franz J},
title = {{A Guide to Sexual Selection Theory}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2012},
volume = {43},
number = {1},
pages = {287--311},
month = dec
}
@incollection{Hatchwell:2006ik,
author = {Hatchwell, Ben J and Sharp, Stuart P},
title = {{Kin Selection, Constraints, and the Evolution of Cooperative Breeding in Long-Tailed Tits}},
year = {2006},
pages = {355--395},
publisher = {Elsevier}
}
@article{Pacheco:2009hz,
author = {Pacheco, Jorge M and Pinheiro, Fl{\'a}vio L and Santos, Francisco C},
title = {{Population Structure Induces a Symmetry Breaking Favoring the Emergence of Cooperation}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {12},
pages = {e1000596},
month = dec
}
@article{Huang:2009fy,
author = {Huang, X and Feng, Q and Qian, Q and Zhao, Q and Wang, L and Wang, A and Guan, J and Fan, D and Weng, Q and Huang, T and Dong, G and Sang, T and Han, B},
title = {{High-throughput genotyping by whole-genome resequencing}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {6},
pages = {1068--1076},
month = jun
}
@article{Bohlen:2004cg,
author = {Bohlen, Patrick J and Groffman, Peter M and Fahey, Timothy J and Fisk, Melany C and Suarez, Esteban and Pelletier, Derek M and Fahey, Robert T},
title = {{Ecosystem Consequences of Exotic Earthworm Invasion of North Temperate Forests}},
journal = {Ecosystems},
year = {2004},
volume = {7},
number = {1},
pages = {1--12},
month = feb
}
@article{Brumfield:2008hv,
author = {Brumfield, Robb and Liu, Liang and Lum, David and Edwards, Scott},
title = {{Comparison of Species Tree Methods for Reconstructing the Phylogeny of Bearded Manakins (Aves: Pipridae, Manacus) from Multilocus Sequence Data}},
journal = {Systematic Biology},
year = {2008},
volume = {57},
number = {5},
pages = {719--731},
month = oct
}
@article{Thrall:1998vn,
author = {Thrall, PH and Antonovics, J and Wilson, WG and Wilson, WG},
title = {{Allocation to sexual versus nonsexual disease transmission}},
journal = {The American Naturalist},
year = {1998},
volume = {151},
number = {1},
pages = {29--45}
}
@article{Moghadam:2013jy,
author = {Moghadam, Hooman K and Moghadam, Hooman K and Harrison, Peter W and Harrison, Peter W and Zachar, Gergely and Zachar, Gergely and Sz{\'e}kely, Tam{\'a}s and Mank, Judith E and Mank, Judith E},
title = {{The plover neurotranscriptome assembly: transcriptomic analysis in an ecological model species without a reference genome}},
journal = {Molecular Ecology Resources},
year = {2013},
volume = {13},
number = {4},
pages = {n/a--n/a},
month = mar
}
@article{Steibel:2009cp,
author = {Steibel, Juan Pedro and Poletto, Rosangela and Coussens, Paul M and Rosa, Guilherme J M},
title = {{A powerful and flexible linear mixed model framework for the analysis of relative quantification RT-PCR data}},
journal = {Genomics},
year = {2009},
volume = {94},
number = {2},
pages = {146--152},
month = aug
}
@article{Hughes:2009ew,
author = {Hughes, Austin L and Friedman, Robert},
title = {{More radical amino acid replacements in primates than in rodents: Support for the evolutionary role of effective population size}},
journal = {Gene},
year = {2009},
volume = {440},
number = {1-2},
pages = {50--56},
month = jul
}
@article{Wanlong:2013ea,
author = {Wan-long, Zhu and Wan-long, Zhu and Zheng-kun, Wang and Zheng-kun, Wang and Lin, Zhang and Lin, Zhang and Guang, Yang and Guang, Yang},
title = {{Journal of Thermal Biology}},
journal = {Journal of Thermal Biology},
year = {2013},
volume = {38},
number = {6},
pages = {318--323},
month = aug
}
@article{Feeney:2013gn,
author = {Feeney, W E and Medina, I and Somveille, M and Heinsohn, R and Hall, M L and Mulder, R A and Stein, J A and Kilner, R M and Langmore, N E},
title = {{Brood Parasitism and the Evolution of Cooperative Breeding in Birds}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6165},
pages = {1506--1508},
month = dec
}
@article{Melian:2012hk,
author = {Meli{\'a}n, Carlos J and Meli{\'a}n, Carlos J and Alonso, David and Alonso, David and Allesina, Stefano and Allesina, Stefano and Condit, Richard S and Condit, Richard S and Etienne, Rampal S},
title = {{Does Sex Speed Up Evolutionary Rate and Increase Biodiversity?}},
journal = {PLOS Computational Biology},
year = {2012},
volume = {8},
number = {3},
pages = {e1002414},
month = mar
}
@article{Wang:2001dn,
author = {Wang, JL},
title = {{A pseudo-likelihood method for estimating effective population size from temporally spaced samples}},
journal = {Genetical Research},
year = {2001},
volume = {78},
number = {3},
pages = {243--257}
}
@article{WosOxley:2010cv,
author = {Wos-Oxley, Melissa L and Wos-Oxley, Melissa L and Plumeier, Iris and Plumeier, Iris and von Eiff, Christof and von Eiff, Christof and Taudien, Stefan and Taudien, Stefan and Platzer, Matthias and Platzer, Matthias and Vilchez-Vargas, Ramiro and Vilchez-Vargas, Ramiro and Becker, Karsten and Becker, Karsten and Pieper, Dietmar H and Pieper, Dietmar H},
title = {{A poke into the diversity and associations within human anterior nare microbial communities.}},
journal = {The ISME Journal},
year = {2010},
volume = {4},
number = {7},
pages = {839--851},
month = jul
}
@article{Verzijden:2012cv,
author = {Verzijden, Machteld N and Verzijden, Machteld N and ten Cate, Carel and ten Cate, Carel and Servedio, Maria R and Kozak, Genevieve M and Kozak, Genevieve M and Boughman, Jenny W and Boughman, Jenny W and Svensson, Erik I},
title = {{The impact of learning on sexual selection and speciation}},
journal = {Trends In Ecology {\&} Evolution},
year = {2012},
volume = {27},
number = {9},
pages = {511--519},
month = sep
}
@article{Birkhead:1996va,
author = {Birkhead, TR},
title = {{Sperm competition: Evolution and mechanisms}},
journal = {Current Topics In Developmental Biology, Vol 33},
year = {1996},
volume = {33},
pages = {103--158}
}
@article{Richter:2009fn,
author = {Richter, Brent G and Sexton, David P},
title = {{Managing and Analyzing Next-Generation Sequence Data}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {6},
pages = {e1000369},
month = jun
}
@article{Ojeda:1999tv,
author = {Ojeda, RA and Ojeda, RA and Borghi, CE and Borghi, CE and Diaz, GB and Diaz, GB and Giannoni, SM and Giannoni, SM and Mares, MA and Braun, JK and Braun, JK},
title = {{Evolutionary convergence of the highly adapted desert rodent Tympanoctomys barrerae (Octodontidae)}},
journal = {Journal of Arid Environments},
year = {1999},
volume = {41},
number = {4},
pages = {443--452}
}
@article{Fischer:2012gd,
author = {Fischer, Joern and Ritchie, Euan G and Hanspach, Jan},
title = {{Academia's obsession with quantity}},
journal = {Trends In Ecology {\&} Evolution},
year = {2012},
volume = {27},
number = {9},
pages = {473--474},
month = sep
}
@article{Olsen:2008cs,
author = {Olsen, Brian J and Greenberg, Russell and Fleischer, Robert C and Walters, Jeffrey R},
title = {{Extrapair paternity in the swamp sparrow, \textit{Melospiza} georgiana: male access or female preference?}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {63},
number = {2},
pages = {285--294},
month = sep
}
@article{Dugdale:2008fp,
author = {Dugdale, Hannah L and Macdonald, David W and Pope, Lisa C and Johnson, Paul J and Burke, Terry},
title = {{Reproductive skew and relatedness in social groups of European badgers, Meles meles}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {7},
pages = {1815--1827},
month = apr
}
@article{Anonymous:4VcA3XeU,
title = {{Southwest Nat 2005 Husak}},
year = {2005},
pages = {42},
month = feb
}
@article{Hansen:2011gz,
author = {Hansen, A K and Moran, N A},
title = {{Aphid genome expression reveals host-symbiont cooperation in the production of amino acids}},
journal = {PNAS},
year = {2011},
volume = {108},
number = {7},
pages = {2849--2854},
month = feb
}
@article{Kiyota:2008ce,
author = {Kiyota, Masashi and Insley, Stephen J and Lance, Stacey L},
title = {{Effectiveness of territorial polygyny and alternative mating strategies in northern fur seals, Callorhinus ursinus}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {5},
pages = {739--746},
month = sep
}
@article{Ebensperger:2008ef,
author = {Ebensperger, Luis A and Hayes, Loren D},
title = {{On the dynamics of rodent social groups}},
journal = {Behavioural Processes},
year = {2008},
volume = {79},
number = {2},
pages = {85--92},
month = oct
}
@article{Versteeg:2003gq,
author = {Versteeg, R},
title = {{The Human Transcriptome Map Reveals Extremes in Gene Density, Intron Length, GC Content, and Repeat Pattern for Domains of Highly and Weakly Expressed Genes}},
journal = {Genome Research},
year = {2003},
volume = {13},
number = {9},
pages = {1998--2004},
month = sep
}
@article{LacasGervais:2003jo,
author = {Lacas-Gervais, S and Maurel, D and Hubert, F and Allevard, A M and Doukary, A and Maggi, V and Siaud, P and Gharib, C and Sicard, B and Calas, A and Hardin-Pouzet, H},
title = {{Vasopressin and galanin expression in the hypothalamus of two African rodents, Taterillus gracilis and Steatomys caurinus, subjected to water-restriction}},
journal = {General and Comparative Endocrinology},
year = {2003},
volume = {133},
number = {1},
pages = {132--145},
month = aug
}
@article{Hughes:2001ty,
author = {Hughes, JB and Hughes, JB and Hellmann, JJ and Hellmann, JJ and Ricketts, TH and Ricketts, TH and Bohannan, BJM and Bohannan, BJM},
title = {{Counting the uncountable: Statistical approaches to estimating microbial diversity}},
journal = {Applied and Environmental Microbiology},
year = {2001},
volume = {67},
number = {10},
pages = {4399--4406}
}
@article{RALanguageandEn:wf,
author = {R Core Development Team, Firstname},
title = {{R: A Language and Environment for Statistical Computing}},
year = {2011},
month = mar
}
@article{Anonymous:I-_fHP1g,
title = {{showpdf.php}},
year = {2003},
pages = {1--10},
month = aug
}
@article{MorenoEstrada:2009fp,
author = {Moreno-Estrada, A and Tang, K and Sikora, M and Marques-Bonet, T and Casals, F and Navarro, A and Calafell, F and Bertranpetit, J and Stoneking, M and Bosch, E},
title = {{Interrogating 11 Fast-Evolving Genes for Signatures of Recent Positive Selection in Worldwide Human Populations}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {10},
pages = {2285--2297},
month = sep
}
@article{Kokko:1998um,
author = {Kokko, H and Sutherland, WJ and Lindstrom, J and Reynolds, JD and Mackenzie, A},
title = {{Individual mating success, lek stability, and the neglected limitations of statistical power}},
journal = {Animal Behaviour},
year = {1998},
volume = {56},
pages = {755--762}
}
@article{WHITELEY:2011ji,
author = {WHITELEY, ANDREW R and WHITELEY, ANDREW R and BHAT, ANURADHA and BHAT, ANURADHA and MARTINS, EMILIA P and MARTINS, EMILIA P and MAYDEN, RICHARD L and MAYDEN, RICHARD L and ARUNACHALAM, M and ARUNACHALAM, M and UUSI-HEIKKIL{\"A}, SILVA and UUSI-HEIKKIL{\"A}, SILVA and AHMED, A T A and AHMED, A T A and SHRESTHA, JIWAN and SHRESTHA, JIWAN and CLARK, MATTHEW and CLARK, MATTHEW and STEMPLE, DEREK and STEMPLE, DEREK and Bernatchez, Louis and Bernatchez, Louis},
title = {{Population genomics of wild and laboratory zebrafish (Danio rerio)}},
journal = {Molecular Ecology},
year = {2011},
pages = {no--no},
month = sep
}
@article{Kemena:2009ez,
author = {Kemena, C and Notredame, C},
title = {{Upcoming challenges for multiple sequence alignment methods in the high-throughput era}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {19},
pages = {2455--2465},
month = sep
}
@article{Paterson:1998up,
author = {Paterson, S},
title = {{Evidence for balancing selection at the major histocompatibility complex in a free-living ruminant}},
journal = {Journal of Heredity},
year = {1998},
volume = {89},
number = {4},
pages = {289--294}
}
@article{Roth:2011ti,
author = {Roth, T C and LaDage, L D and Pravosudov, V V},
title = {{Variation in hippocampal morphology along an environmental gradient: controlling for the effects of day length}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2011},
volume = {278},
number = {1718},
pages = {2662--2667}
}
@article{vanderWalt:2001tm,
author = {van der Walt, JM and Nel, LH and Hoelzel, AR},
title = {{Characterization of major histocompatibility complex DRB diversity in the endemic South African antelope Damaliscus pygargus: a comparison in two subspecies with different demographic histories}},
journal = {Molecular Ecology},
year = {2001},
volume = {10},
number = {7},
pages = {1679--1688}
}
@article{LARSON:2011kp,
author = {LARSON, E L and HUME, G L and ANDR{\'e}S, J A and HARRISON, R G},
title = {{Post-mating prezygotic barriers to gene exchange between hybridizing field crickets}},
journal = {Journal of Evolutionary Biology},
year = {2011},
pages = {no--no},
month = nov
}
@article{Clark:2009ko,
author = {Clark, Nathaniel L and Gasper, Joe and Sekino, Masashi and Springer, Stevan A and Aquadro, Charles F and Swanson, Willie J},
title = {{Coevolution of Interacting Fertilization Proteins}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {7},
pages = {e1000570},
month = jul
}
@article{Clucas:2008fb,
author = {Clucas, Barbara and Rowe, Matthew P and Owings, Donald H and Arrowood, Patricia C},
title = {{Snake scent application in ground squirrels, Spermophilus spp.: a novel form of antipredator behaviour?}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {1},
pages = {299--307},
month = jan
}
@article{Biedrzycka:2008ef,
author = {Biedrzycka, Aleksandra and Radwan, Jacek},
title = {{Population fragmentation and major histocompatibility complex variation in the spotted suslik, Spermophilus suslicus}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {22},
pages = {4801--4811},
month = nov
}
@article{Minakata:1900ws,
author = {Minakata, K},
title = {{Artificial deformations of heads, and some customs connected with polyandry}},
journal = {Nature},
year = {1900},
volume = {62},
pages = {437--437}
}
@article{Hedrick:1999ut,
author = {Hedrick, PW and Parker, KM and Miller, EL and Miller, PS},
title = {{Major histocompatibility complex variation in the endangered Przewalski's horse}},
journal = {Genetics},
year = {1999},
volume = {152},
number = {4},
pages = {1701--1710}
}
@article{Zenuto:2010gz,
author = {Zenuto, Roxana R},
title = {{Dear enemy relationships in the subterranean rodent \textit{Ctenomys} talarum: the role of memory of familiar odours}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {6},
pages = {1247--1255},
month = jun
}
@article{Green:2006bf,
author = {Green, Richard E and Krause, Johannes and Ptak, Susan E and Briggs, Adrian W and Ronan, Michael T and Simons, Jan F and Du, Lei and Egholm, Michael and Rothberg, Jonathan M and Paunovic, Maja and P{\"a}{\"a}bo, Svante},
title = {{Analysis of one million base pairs of Neanderthal DNA}},
journal = {Nature},
year = {2006},
volume = {444},
number = {7117},
pages = {330--336},
month = nov
}
@techreport{Anonymous:QOwQC-MU,
title = {{AllPaths-LG_Manual}},
year = {2011},
month = jul
}
@article{IRWIN:1991ug,
author = {IRWIN, DM and KOCHER, TD and WILSON, AC},
title = {{Evolution of the Cytochrome-B Gene of Mammals}},
journal = {Journal of Molecular Evolution},
year = {1991},
volume = {32},
number = {2},
pages = {128--144}
}
@article{Suchyta:2003fa,
author = {Suchyta, Steven P and Sipkovsky, Sue and Kruska, Rachael and Jeffers, Abra and McNulty, Amanda and Coussens, Matthew J and Tempelman, Robert J and Halgren, Robert G and Saama, Peter M and Bauman, Dale E and Boisclair, Yves R and Burton, Jeanne L and Collier, Robert J and DePeters, Edward J and Ferris, Theodore A and Lucy, Matthew C and McGuire, Mark A and Medrano, Juan F and Overton, Thomas R and Smith, Timothy P and Smith, George W and Sonstegard, Tad S and Spain, James N and Spiers, Donald E and Yao, Jianbo and Coussens, Paul M},
title = {{Development and testing of a high-density cDNA microarray resource for cattle}},
journal = {Physiological Genomics},
year = {2003},
volume = {15},
number = {2},
pages = {158--164},
month = oct
}
@article{Guo:2007jr,
author = {Guo, Sheng and Guo, Sheng and Kim, Junhyong and Kim, Junhyong},
title = {{Molecular evolution of \textit{Drosophila} odorant receptor genes}},
journal = {Molecular Biology and Evolution},
year = {2007},
volume = {24},
number = {5},
pages = {1198--1207}
}
@article{Anon:1919ud,
author = {Anon},
title = {{Do birds show a monogamous instinct?}},
journal = {Journal of Heredity},
year = {1919},
volume = {10},
pages = {181--181}
}
@article{Moller:1997tn,
author = {Moller, AP and Tegelstrom, H},
title = {{Extra-pair paternity and tail ornamentation in the barn swallow \emph{Hirundo rustica}}},
journal = {Behavioral Ecology and Sociobiology},
year = {1997},
volume = {41},
number = {5},
pages = {353--360}
}
@article{Carranza:2010ig,
author = {Carranza, Juan},
title = {{Sexual selection and the evolution of evolutionary theories}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {3},
pages = {e5--e6},
month = mar
}
@article{Calderon:2009gf,
author = {Calderon, Isabel and Calderon, Isabel and Turon, Xavier and Turon, Xavier and Lessios, H. A. and Lessios, H. A.},
title = {{Characterization of the Sperm Molecule Bindin in the Sea Urchin Genus Paracentrotus}},
journal = {Journal of Molecular Evolution},
year = {2009},
volume = {68},
number = {4},
pages = {366--376}
}
@article{Bos:2005el,
author = {Bos, D H},
title = {{Evolution by Recombination and Transspecies Polymorphism in the MHC Class I Gene of Xenopus laevis}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {23},
number = {1},
pages = {137--143},
month = aug
}
@article{Ng:2010im,
author = {Ng, Sarah B and Buckingham, Kati J and Lee, Choli and Bigham, Abigail W and Tabor, Holly K and Dent, Karin M and Huff, Chad D and Shannon, Paul T and Jabs, Ethylin Wang and Nickerson, Deborah A and Shendure, Jay and Bamshad, Michael J},
title = {{Exome sequencing identifies the cause of a mendelian disorder}},
journal = {Nature Genetics},
year = {2009},
volume = {42},
number = {1},
pages = {30--35},
month = nov
}
@article{Hyde:2007cm,
author = {Hyde, John R and Vetter, Russell D},
title = {{The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2007},
volume = {44},
number = {2},
pages = {790--811},
month = aug
}
@article{Seabury:2010tt,
author = {Seabury, C.M. and Seabury, P.M. and Decker, J.E. and Schnabel, R.D. and Taylor, J.F. and Womack, J.E.},
title = {{Diversity and evolution of 11 innate immune genes in Bos taurus taurus and Bos taurus indicus cattle}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2010},
volume = {107},
number = {1},
pages = {151}
}
@article{Templeton:2010hj,
author = {Templeton, Alan R},
title = {{Coalescent-based, maximum likelihood inference in phylogeography}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {3},
pages = {431--435},
month = feb
}
@article{Hermisson:2009dl,
author = {Hermisson, J},
title = {{Who believes in whole-genome scans for selection?}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {4},
pages = {283--284},
month = aug
}
@article{Nunes:2013es,
author = {Nunes, Maria D S and Nunes, Maria D S and Dolezal, Marlies and Dolezal, Marlies and Schl{\"o}tterer, Christian and Schl{\"o}tterer, Christian},
title = {{Extensive paternal mtDNA leakage in natural populations of \textit{Drosophila} \textit{melanogaster}}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = mar
}
@article{Prugh:2010by,
author = {Prugh, Laura and Brashares, Justin},
title = {{Basking in the moonlight? Effect of illumination on capture success of the endangered giant kangaroo rat}},
journal = {Journal of Mammalogy},
year = {2010},
volume = {91},
number = {5},
pages = {1205--1212},
month = oct
}
@article{Simmons:2008be,
author = {Simmons, L W and Beveridge, M and Evans, J P},
title = {{Molecular Evidence for Multiple Paternity in a Feral Population of Green Swordtails}},
journal = {Journal of Heredity},
year = {2008},
volume = {99},
number = {6},
pages = {610--615},
month = may
}
@article{PARKER:1970uz,
author = {Parker, GA},
title = {{REPRODUCTIVE BEHAVIOUR AND NATURE OF SEXUAL SELECTION IN SCATOPHAGA-STERCORARIA L (DIPTERA-SCATOPHAGIDAE) .1. DIURNAL AND SEASONAL CHANGES IN POPULATION DENSITY AROUND SITE OF MATING AND OVIPOSITION}},
journal = {Journal of Animal Ecology},
year = {1970},
volume = {39},
number = {1},
pages = {185--{\&}}
}
@article{Kloosterman:2010dw,
author = {Kloosterman, Bjorn and Oortwijn, Marian and Uitdewilligen, Jan and America, Twan and de Vos, Ric and Visser, Richard GF and Bachem, Christian WB},
title = {{From QTL to candidate gene: Genetical genomics of simple and complex traits in potato using a pooling strategy}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {158}
}
@article{Anonymous:2013jr,
author = {Ch{\'a}vez Galarza, Julio and Henriques, Dora and Johnston, J Spencer and Azevedo, Jo{\~a}o C and Patton, John C and Mu{\~n}oz, Irene and De la R{\'u}a, Pilar and Pinto, M Alice},
title = {{Signatures of selection in the Iberian honey bee (Apis mellifera iberiensis) revealed by a genome scan analysis of single nucleotide polymorphisms}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {23},
pages = {5890--5907},
month = oct
}
@article{WENZEL:1992we,
author = {WENZEL, JW},
title = {{BEHAVIORAL HOMOLOGY AND PHYLOGENY}},
journal = {Annual Review of Ecology and Systematics},
year = {1992},
volume = {23},
pages = {361--381}
}
@article{Myles:2010in,
author = {Myles, Sean and Chia, Jer-Ming and Hurwitz, Bonnie and Simon, Charles and Zhong, Gan Yuan and Buckler, Edward and Ware, Doreen},
title = {{Rapid Genomic Characterization of the Genus Vitis}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {1},
pages = {e8219},
month = jan
}
@article{Wedell:2002uj,
author = {Wedell, N and Gage, MJG and Parker, GA},
title = {{Sperm competition, male prudence and sperm-limited females}},
journal = {Trends In Ecology {\&} Evolution},
year = {2002},
volume = {17},
number = {7},
pages = {313--320}
}
@article{EstevaFont:2012hj,
author = {Esteva-Font, C and Esteva-Font, C and Ballarin, J and Ballarin, J and Fern{\'a}ndez-Llama, P and Fern{\'a}ndez-Llama, P},
title = {{Molecular biology of water and salt regulation in the kidney.}},
journal = {Cellular and Molecular Life Sciences},
year = {2012},
volume = {69},
number = {5},
pages = {683--695},
month = mar
}
@article{Croucher:2012fa,
author = {Croucher, Peter J P and Croucher, Peter J P and Oxford, Geoff S and Oxford, Geoff S and Lam, Athena and Lam, Athena and Mody, Neesha and Mody, Neesha and Gillespie, Rosemary G and Gillespie, Rosemary G},
title = {{COLONIZATION HISTORY AND POPULATION GENETICS OF THE COLOR-POLYMORPHIC HAWAIIAN HAPPY-FACE SPIDER THERIDION GRALLATOR (ARANEAE, THERIDIIDAE)}},
journal = {Evolution},
year = {2012},
volume = {66},
number = {9},
pages = {2815--2833},
month = may
}
@article{Sailaja:2012fe,
author = {Sailaja, Badi Sri and Sailaja, Badi Sri and Takizawa, Takumi and Takizawa, Takumi and Meshorer, Eran and Meshorer, Eran},
title = {{Chromatin immunoprecipitation in mouse hippocampal cells and tissues.}},
journal = {Methods in molecular biology (Clifton, N.J.)},
year = {2012},
volume = {809},
pages = {353--364}
}
@article{Cox:2010ch,
author = {Cox, Murray P and Peterson, Daniel A and Biggs, Patrick J},
title = {{SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {485}
}
@article{Nikolaev:2009jn,
author = {Nikolaev, Sergey I and Iseli, Christian and Sharp, andrew J and Robyr, Daniel and Rougemont, Jacques and Gehrig, Corinne and Farinelli, Laurent and Antonarakis, Stylianos E},
title = {{Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6659},
month = aug
}
@article{PARKER:1997vy,
author = {Parker, GA and Ball, MA and Stockley, P and Gage, MJG and Gage, MJG},
title = {{Sperm competition games: a prospective analysis of risk assessment}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1389},
pages = {1793--1802}
}
@article{Tschirren:2009gh,
author = {Tschirren, Barbara and Sendecka, Joanna and Groothuis, Ton G G and Gustafsson, Lars and Doligez, Blandine},
title = {{Heritable Variation in Maternal Yolk Hormone Transfer in a Wild Bird Population}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {4},
pages = {557--564},
month = oct
}
@article{Helfenstein:2003ic,
author = {Helfenstein, Fabrice and Wagner, Richard H and Danchin, Etienne},
title = {{Sexual conflict over sperm ejection in monogamous pairs of kittiwakes Rissa tridactyla}},
journal = {Behavioral Ecology and Sociobiology},
year = {2003},
volume = {54},
number = {4},
pages = {370--376},
month = sep
}
@article{Seki:2007bk,
author = {Seki, Motohide and Wakano, Joe Yuichiro and Ihara, Yasuo},
title = {{A theoretical study on the evolution of male parental care and female multiple mating: Effects of female mate choice and male care bias}},
journal = {Journal of Theoretical Biology},
year = {2007},
volume = {247},
number = {2},
pages = {281--296},
month = jul
}
@article{BovineGenomeSequencingandAnalysisConsortium:2009cx,
author = {{The Bovine Genome Sequencing and Analysis Consortium} and Elsik, C G and Tellam, R L and Worley, K C and Gibbs, R A and Muzny, D M and Weinstock, G M and Adelson, D L and Eichler, E E and Elnitski, L and Guigo, R and Hamernik, D L and Kappes, S M and Lewin, H A and Lynn, D J and Nicholas, F W and Reymond, A and Rijnkels, M and Skow, L C and Zdobnov, E M and Schook, L and Womack, J and Alioto, T and Antonarakis, S E and Astashyn, A and Chapple, C E and Chen, H C and Chrast, J and Camara, F and Ermolaeva, O and Henrichsen, C N and Hlavina, W and Kapustin, Y and Kiryutin, B and Kitts, P and Kokocinski, F and Landrum, M and Maglott, D and Pruitt, K and Sapojnikov, V and Searle, S M and Solovyev, V and Souvorov, A and Ucla, C and Wyss, C and Anzola, J M and Gerlach, D and Elhaik, E and Graur, D and Reese, J T and Edgar, R C and McEwan, J C and Payne, G M and Raison, J M and Junier, T and Kriventseva, E V and Eyras, E and Plass, M and Donthu, R and Larkin, D M and Reecy, J and Yang, M Q and Chen, L and Cheng, Z and Chitko-McKown, C G and Liu, G E and Matukumalli, L K and Song, J and Zhu, B and Bradley, D G and Brinkman, F S L and Lau, L P L and Whiteside, M D and Walker, A and Wheeler, T T and Casey, T and German, J B and Lemay, D G and Maqbool, N J and Molenaar, A J and Seo, S and Stothard, P and Baldwin, C L and Baxter, R and Brinkmeyer-Langford, C L and Brown, W C and Childers, C P and Connelley, T and Ellis, S A and Fritz, K and Glass, E J and Herzig, C T A and Iivanainen, A and Lahmers, K K and Bennett, A K and Dickens, C M and Gilbert, J G R and Hagen, D E and Salih, H and Aerts, J and Caetano, A R and Dalrymple, B and Garcia, J F and Gill, C A and Hiendleder, S G and Memili, E and Spurlock, D and Williams, J L and Alexander, L and Brownstein, M J and Guan, L and Holt, R A and Jones, S J M and Marra, M A and Moore, R and Moore, S S and Roberts, A and Taniguchi, M and Waterman, R C and Chacko, J and Chandrabose, M M and Cree, A and Dao, M D and Dinh, H H and Gabisi, R A and Hines, S and Hume, J and Jhangiani, S N and Joshi, V and Kovar, C L and Lewis, L R and Liu, Y s and Lopez, J and Morgan, M B and Nguyen, N B and Okwuonu, G O and Ruiz, S J and Santibanez, J and Wright, R A and Buhay, C and Ding, Y and Dugan-Rocha, S and Herdandez, J and Holder, M and Sabo, A and Egan, A and Goodell, J and Wilczek-Boney, K and Fowler, G R and Hitchens, M E and Lozado, R J and Moen, C and Steffen, D and Warren, J T and Zhang, J and Chiu, R and Schein, J E and Durbin, K J and Havlak, P and Jiang, H and Liu, Y and Qin, X and Ren, Y and Shen, Y and Song, H and Bell, S N and Davis, C and Johnson, A J and Lee, S and Nazareth, L V and Patel, B M and Pu, L L and Vattathil, S and Williams, R L and Curry, S and Hamilton, C and Sodergren, E and Wheeler, D A and Barris, W and Bennett, G L and Eggen, A and Green, R D and Harhay, G P and Hobbs, M and Jann, O and Keele, J W and Kent, M P and Lien, S and McKay, S D and McWilliam, S and Ratnakumar, A and Schnabel, R.D. and Smith, T and Snelling, W M and Sonstegard, T S and Stone, R T and Sugimoto, Y and Takasuga, A and Taylor, J.F. and Van Tassell, C P and MacNeil, M D and Abatepaulo, A R R and Abbey, C A and Ahola, V and Almeida, I G and Amadio, A F and Anatriello, E and Bahadue, S M and Biase, F H and Boldt, C R and Carroll, J A and Carvalho, W A and Cervelatti, E P and Chacko, E and Chapin, J E and Cheng, Y and Choi, J and Colley, A J and de Campos, T A and De Donato, M and Santos, I K F d M and de Oliveira, C J F and Deobald, H and Devinoy, E and Donohue, K E and Dovc, P and Eberlein, A and Fitzsimmons, C J and Franzin, A M and Garcia, G R and Genini, S and Gladney, C J and Grant, J R and Greaser, M L and Green, J A and Hadsell, D L and Hakimov, H A and Halgren, R and Harrow, J L and Hart, E A and Hastings, N and Hernandez, M and Hu, Z L and Ingham, A and Iso-Touru, T and Jamis, C and Jensen, K and Kapetis, D and Kerr, T and Khalil, S S and Khatib, H and Kolbehdari, D and Kumar, C G and Kumar, D and Leach, R and Lee, J C-M and Li, C and Logan, K M and Malinverni, R and Marques, E and Martin, W F and Martins, N F and Maruyama, S R and Mazza, R and McLean, K L and Medrano, J F and Moreno, B T and More, D D and Muntean, C T and Nandakumar, H P and Nogueira, M F G and Olsaker, I and Pant, S D and Panzitta, F and Pastor, R C P and Poli, M A and Poslusny, N and Rachagani, S and Ranganathan, S and Razpet, A and Riggs, P K and Rincon, G and Rodriguez-Osorio, N and Rodriguez-Zas, S L and Romero, N E and Rosenwald, A and Sando, L and Schmutz, S M and Shen, L and Sherman, L and Southey, B R and Lutzow, Y S and Sweedler, J V and Tammen, I and Telugu, B P V L and Urbanski, J M and Utsunomiya, Y T and Verschoor, C P and Waardenberg, A J and Wang, Z and...},
title = {{The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5926},
pages = {522--528},
month = apr
}
@article{HAIG:1994vj,
author = {HAIG, SM and WALTERS, JR and PLISSNER, JH},
title = {{GENETIC-EVIDENCE FOR MONOGAMY IN THE COOPERATIVELY BREEDING RED-COCKADED WOODPECKER}},
journal = {Behavioral Ecology and Sociobiology},
year = {1994},
volume = {34},
number = {5},
pages = {295--303}
}
@article{Swanson:2011hq,
author = {Swanson, Christina I and Swanson, Christina I and Schwimmer, David B and Schwimmer, David B and Barolo, Scott and Barolo, Scott},
title = {{Rapid evolutionary rewiring of a structurally constrained eye enhancer.}},
journal = {Current biology : CB},
year = {2011},
volume = {21},
number = {14},
pages = {1186--1196},
month = jul,
annote = {could enhancers be important in my project?
cis-reg elements
read ref 1 and 2, 10
}
}
@article{Mukai:2009cr,
author = {Mukai, Motoko and Replogle, Kirstin and Drnevich, Jenny and Wang, Gang and Wacker, Douglas and Band, Mark and Clayton, David F and Wingfield, John C},
title = {{Seasonal Differences of Gene Expression Profiles in Song Sparrow (\textit{Melospiza} \textit{melodia}) Hypothalamus in Relation to Territorial Aggression}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {12},
pages = {e8182},
month = dec
}
@article{Holman:2010ku,
author = {Holman, L and Jorgensen, C G and Nielsen, J and D'Ettorre, P},
title = {{Identification of an ant queen pheromone regulating worker sterility}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1701},
pages = {3793--3800},
month = nov
}
@article{Redman:2008cf,
author = {Redman, E and Grillo, V and Saunders, G and Packard, E and Jackson, F and Berriman, M and Gilleard, J S},
title = {{Genetics of Mating and Sex Determination in the Parasitic Nematode Haemonchus contortus}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {4},
pages = {1877--1887},
month = oct
}
@article{Bowyer:2011hd,
author = {Bowyer, R Terry and Rachlow, Janet L and Stewart, Kelley M and Ballenberghe, Victor},
title = {{Vocalizations by Alaskan moose: female incitation of male aggression}},
journal = {Behavioral Ecology and Sociobiology},
year = {2011},
month = jul
}
@article{Birol:2013fz,
author = {Birol, I and Raymond, A and Jackman, S D and Pleasance, S},
title = {{Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data}},
journal = {{\ldots} },
year = {2013}
}
@article{Firman:2011tr,
author = {Firman, R C},
title = {{Polyandrous females benefit by producing sons that achieve high reproductive success in a competitive environment}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2011},
volume = {278},
number = {1719},
pages = {2823--2831}
}
@article{Baker:2005ib,
author = {Baker, A J},
title = {{Reconstructing the tempo and mode of evolution in an extinct clade of birds with ancient DNA: The giant moas of New Zealand}},
journal = {PNAS},
year = {2005},
volume = {102},
number = {23},
pages = {8257--8262},
month = jun
}
@article{Crudgington:2009gt,
author = {Crudgington, Helen S and Fellows, Sarah and Badcock, Nichola S and Snook, Rhonda R},
title = {{EXPERIMENTAL MANIPULATION OF SEXUAL SELECTION PROMOTES GREATER MALE MATING CAPACITY BUT DOES NOT ALTER SPERM INVESTMENT}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {4},
pages = {926--938},
month = apr
}
@article{Grewal:2003th,
author = {Grewal, SIS and Grewal, SIS and Moazed, D and Moazed, D},
title = {{Heterochromatin and epigenetic control of gene expression}},
journal = {Science (New York, NY)},
year = {2003},
volume = {301},
number = {5634},
pages = {798--802}
}
@article{Konczal:2013cya,
author = {Konczal, M and Koteja, P and Stuglik, M T and Radwan, J and Babik, W},
title = {{Accuracy of allele frequency estimation using pooled RNA-Seq}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {1--27},
month = oct
}
@article{OualiHassenaoui:2011kz,
author = {Ouali-Hassenaoui, Saliha and Bendjelloul, Mounira and Dekar, Aicha and Theodosis, Dionysia},
title = {{Comptes Rendus Biologies}},
journal = {Comptes rendus - Biologies},
year = {2011},
volume = {334},
number = {12},
pages = {855--862},
month = dec
}
@article{Chu:2013gw,
author = {Chu, Hsueh-Ting and Chu, Hsueh-Ting and Hsiao, William W L and Hsiao, William W L and Chen, Jen-Chih and Chen, Jen-Chih and Yeh, Tze-Jung and Yeh, Tze-Jung and Tsai, Mong-Hsun and Tsai, Mong-Hsun and Lin, Han and Lin, Han and Liu, Yen-Wenn and Liu, Yen-Wenn and Lee, Sheng-An and Lee, Sheng-An and Chen, Chaur-Chin and Chen, Chaur-Chin and Tsao, Theresa T H and Tsao, Theresa T H and Kao, Cheng-Yan and Kao, Cheng-Yan},
title = {{EBARDenovo: Highly accurate \textit{de novo} assembly of RNA-Seq with efficient chimera-detection.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
month = mar
}
@article{Cohan:2002fl,
author = {Cohan, FM and Cohan, FM},
title = {{What are bacterial species?}},
journal = {Annual Review of Microbiology},
year = {2002},
volume = {56},
pages = {457--487}
}
@article{SustkovaFiserova:2009um,
author = {Sustkova-Fiserova, Magdalena and Sustkova-Fiserova, Magdalena and Vavrova, Jaroslava and Vavrova, Jaroslava and Krsiak, Miloslav and Krsiak, Miloslav},
title = {{Brain levels of GABA, glutamate and aspartate in sociable, aggressive and timid mice: An in vivo microdialysis study}},
journal = {Neuroendocrinology Letters},
year = {2009},
volume = {30},
number = {1},
pages = {79--84}
}
@article{Chain:2008ks,
author = {Chain, Fr{\'e}d{\'e}ric J J and Ilieva, Dora and Evans, Ben J},
title = {{Single-Species Microarrays and Comparative Transcriptomics}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {9},
pages = {e3279},
month = sep
}
@article{Ding:2013jd,
author = {Ding, Tian-Bo and Ding, Tian-Bo and Niu, Jin-Zhi and Niu, Jin-Zhi and Yang, Li-Hong and Yang, Li-Hong and Zhang, Kun and Dou, Wei and Wang, Jin-Jun},
title = {{Pesticide Biochemistry and Physiology}},
journal = {Pesticide Biochemistry and Physiology},
year = {2013},
volume = {106},
number = {1-2},
pages = {28--37},
month = jun
}
@article{Dawson:2010ek,
author = {Dawson, Deborah A and Horsburgh, Gavin J and Kupper, Clemens and Stewart, Ian R K and Ball, Alexander D and Durrant, Kate L and Hansson, Bengt and Bacon, Ida and Bird, Susannah and Klein, Akos and Krupa, andrew P and Lee, Jin-Won and Martin-Galvez, David and Simeoni, Michelle and Smith, Gemma and Spurgin, Lewis G and Burke, Terry},
title = {{New methods to identify conserved microsatellite loci and develop primer sets of high cross-species utility - as demonstrated for birds}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {3},
pages = {475--494},
month = may
}
@article{Rubenstein:2011cn,
author = {Rubenstein, Dustin R},
title = {{Spatiotemporal environmental variation, risk aversion, and the evolution of cooperative breeding as a bet-hedging strategy}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2011},
volume = {108},
pages = {10816--10822}
}
@article{BesterMeredith:2005cj,
author = {Bester-Meredith, Janet K and Martin, Patricia A and Marler, Catherine A},
title = {{Manipulations of vasopressin alter aggression differently across testing conditions in monogamous and non-monogamous\textit{Peromyscus} mice}},
journal = {Aggressive Behavior},
year = {2005},
volume = {31},
number = {2},
pages = {189--199},
month = apr
}
@article{Liu:2009hg,
author = {Liu, Jin-Xian and Ely, Bert},
title = {{Sibship reconstruction demonstrates the extremely low effective population size of striped bass Morone saxatilisin the Santee-Cooper system, South Carolina, USA}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {19},
pages = {4112--4120},
month = oct
}
@article{Langley:2010ie,
author = {Langley, Kate and Heron, Jon and O'Donovan, Michael C and Owen, Michael J and Thapar, Anita},
title = {{Genotype link with extreme antisocial behavior: the contribution of cognitive pathways.}},
journal = {Archives of general psychiatry},
year = {2010},
volume = {67},
number = {12},
pages = {1317--1323},
month = dec
}
@article{Lovlie:2007uq,
author = {Lovlie, Hanne and Pizzari, Tommaso},
title = {{Sex in the morning or in the evening? Females adjust daily mating patterns to the intensity of sexual harassment}},
journal = {The American Naturalist},
year = {2007},
volume = {170},
number = {1},
pages = {E1--E13}
}
@article{Hamby:2013gz,
author = {Hamby, Kelly A and Kwok, Rosanna S and Zalom, Frank G and Chiu, Joanna C},
title = {{Integrating Circadian Activity and Gene Expression Profiles to Predict Chronotoxicity of \textit{Drosophila} suzukii Response to Insecticides}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {7},
pages = {e68472},
month = jul
}
@article{Meyenberg:2011iv,
author = {Meyenberg, Karsten and Meyenberg, Karsten and Lygina, Antonina S and Lygina, Antonina S and van den Bogaart, Geert and van den Bogaart, Geert and Jahn, Reinhard and Jahn, Reinhard and Diederichsen, Ulf and Diederichsen, Ulf},
title = {{SNARE derived peptide mimic inducing membrane fusion.}},
journal = {Chemical communications (Cambridge, England)},
year = {2011},
volume = {47},
number = {33},
pages = {9405--9407},
month = sep
}
@article{RuizNarvaez:2008ka,
author = {Ruiz-Narvaez, Edward A and Campos, Hannia},
title = {{Evolutionary rate heterogeneity of Alu repeats upstream of the APOA5 gene: do they regulate APOA5 expression?}},
journal = {Journal of Human Genetics},
year = {2008},
volume = {53},
number = {3},
pages = {247--253},
month = jan
}
@article{OZER:2011ta,
author = {OZER, F. and GELLERMAN, H. and Ashley, M V},
title = {{Genetic impacts of Anacapa deer mice reintroductions following rat eradication}},
journal = {Molecular Ecology},
year = {2011}
}
@article{Chaine:2008dg,
author = {Chaine, A S and Lyon, B E},
title = {{Adaptive Plasticity in Female Mate Choice Dampens Sexual Selection on Male Ornaments in the Lark Bunting}},
journal = {Science (New York, NY)},
year = {2008},
volume = {319},
number = {5862},
pages = {459--462},
month = jan
}
@article{Persson:2007ei,
author = {Persson, Jenny and Vance, Russell E},
title = {{Genetics-squared: combining host and pathogen genetics in the analysis of innate immunity and bacterial virulence}},
journal = {Immunogenetics},
year = {2007},
volume = {59},
number = {10},
pages = {761--778},
month = sep
}
@article{Glemin:2007it,
author = {Glemin, S},
title = {{Mating Systems and the Efficacy of Selection at the Molecular Level}},
journal = {Genetics},
year = {2007},
volume = {177},
number = {2},
pages = {905--916},
month = aug
}
@article{Fuller:2007hz,
author = {Fuller, Tova F and Fuller, Tova F and Ghazalpour, Anatole and Ghazalpour, Anatole and Aten, Jason E and Aten, Jason E and Drake, Thomas A and Drake, Thomas A and Lusis, Aldons J and Lusis, Aldons J and Horvath, Steve and Horvath, Steve},
title = {{Weighted gene coexpression network analysis strategies applied to mouse weight}},
journal = {Mammalian Genome},
year = {2007},
volume = {18},
number = {6-7},
pages = {463--472},
month = aug
}
@article{SHELDON:1994uq,
author = {SHELDON, BC},
title = {{MALE PHENOTYPE, FERTILITY, AND THE PURSUIT OF EXTRA-PAIR COPULATIONS BY FEMALE BIRDS}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1994},
volume = {257},
number = {1348},
pages = {25--30}
}
@article{Chikhi:2013epa,
author = {Chikhi, R and Medvedev, P},
title = {{Informed and automated k-mer size selection for genome assembly}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
month = jun
}
@article{Lemay:2009cm,
author = {Lemay, Danielle G and Lynn, David J and Lynn, David J and Martin, William F and Martin, William F and Neville, Margaret C and Neville, Margaret C and Casey, Theresa M and Casey, Theresa M and Rincon, Gonzalo and Kriventseva, Evgenia V and Kriventseva, Evgenia V and Barris, Wesley C and Barris, Wesley C and Hinrichs, Angie S and Hinrichs, Angie S and Molenaar, Adrian J and Molenaar, Adrian J and Pollard, Katherine S and Pollard, Katherine S and Maqbool, Nauman J and Maqbool, Nauman J and Singh, Kuljeet and Singh, Kuljeet and Murney, Regan and Murney, Regan and Zdobnov, Evgeny M and Tellam, Ross L and Medrano, Juan F and German, J Bruce and German, J Bruce and Rijnkels, Monique and Rijnkels, Monique},
title = {{The bovine lactation genome: insights into the evolution of mammalian milk}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {4},
pages = {R43}
}
@article{Cutrera:2006wv,
author = {Cutrera, Ana Paula and Cutrera, Ana Paula and Lacey, Eileen A},
title = {{Major histocompatibility complex variation in Talas tuco-tucos: The influence of demography on selection}},
journal = {Journal of Mammalogy},
year = {2006},
volume = {87},
number = {4},
pages = {706--716}
}
@article{Marshall:2009jg,
author = {Marshall, Stephen},
title = {{Applying evolutionary concepts outside biology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {8},
pages = {412--413},
month = aug
}
@article{LeLagadec:1998vw,
author = {Le Lagadec, MD and Le Lagadec, MD and Chown, SL and Scholtz, CH and Scholtz, CH},
title = {{Desiccation resistance and water balance in southern African keratin beetles (Coleoptera, Trogidae): the influence of body size and habitat}},
journal = {Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology},
year = {1998},
volume = {168},
number = {2},
pages = {112--122}
}
@article{Callis:2009kv,
author = {Luyt, Brendan and Aaron, Tay Chee Hsien and Thian, Lim Hai and Hong, Cheng Kian},
title = {{Improving Wikipedia's accuracy: Is edit age a solution?}},
journal = {Journal of the American Society for Information Science and Technology},
year = {2007},
volume = {59},
number = {2},
pages = {318--330}
}
@article{Anonymous:2002vp,
title = {{COMPARATIVE WATER BALANCE IN TWO SPECIES OF LlOMYS }},
year = {2002},
pages = {1--6},
month = aug
}
@article{Ludwig:2004dg,
author = {LUDWIG, W},
title = {{ARB: a software environment for sequence data}},
journal = {Nucleic Acids Research},
year = {2004},
volume = {32},
number = {4},
pages = {1363--1371},
month = feb
}
@article{Ramm:2009cc,
author = {Ramm, S A and Mcdonald, L and Hurst, J L and Beynon, R J and Stockley, P},
title = {{Comparative Proteomics Reveals Evidence for Evolutionary Diversification of Rodent Seminal Fluid and Its Functional Significance in Sperm Competition}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {26},
number = {1},
pages = {189--198},
month = oct
}
@article{Moritz:2008eo,
author = {Moritz, C and Patton, J L and Conroy, C J and Parra, J L and White, G C and Beissinger, S R},
title = {{Impact of a Century of Climate Change on Small-Mammal Communities in Yosemite National Park, USA}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5899},
pages = {261--264},
month = oct
}
@article{Suter:2009kw,
author = {Suter, S M and Bielanska, J and Rothlin-Spillmann, S and Strambini, L and Meyer, D R},
title = {{The cost of infidelity to female reed buntings}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {3},
pages = {601--608},
month = may
}
@article{Bi:2013fj,
author = {Bi, Ke and Linderoth, Tyler and Vanderpool, Dan and Good, Jeffrey M and Nielsen, Rasmus and Moritz, Craig},
title = {{Unlocking the vault: next generation museum population genomics}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = sep
}
@article{Soukup:1998ue,
author = {Soukup, SS and Thompson, CF},
title = {{Social mating system and reproductive success in house wrens}},
journal = {Behavioral Ecology},
year = {1998},
volume = {9},
number = {1},
pages = {43--48}
}
@article{HATCHWELL:1999va,
author = {HATCHWELL, BJ},
title = {{Investment strategies of breeders in avian cooperative breeding systems}},
journal = {The American Naturalist},
year = {1999},
volume = {154},
number = {2},
pages = {205--219}
}
@article{Catania:2008hs,
author = {Catania, Kenneth C},
title = {{Worm Grunting, Fiddling, and Charming{\textemdash}Humans Unknowingly Mimic a Predator to Harvest Bait}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {10},
pages = {e3472},
month = oct
}
@article{Leung:2005fb,
author = {Leung, Joseph Ck and Leung, Joseph Ck and Chan, Loretta Yy and Chan, Loretta Yy and Tsang, Anita Wl and Tsang, Anita Wl and Tang, Sydney Cw and Tang, Sydney Cw and Lai, Kar Neng and Lai, Kar Neng},
title = {{Differential expression of aquaporins in the kidneys of streptozotocin-induced diabetic mice.}},
journal = {Nephrology (Carlton, Vic.)},
year = {2005},
volume = {10},
number = {1},
pages = {63--72},
month = feb
}
@article{Wilson:2009dm,
author = {Mobley, Kenyon B and Jones, Adam G},
title = {{Environmental, demographic, and genetic mating system variation among five geographically distinct dusky pipefish ( \textit{Syngnathus floridae}) populations}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {7},
pages = {1476--1490},
month = apr
}
@article{ZHU:1991tl,
author = {ZHU, ZF and VINCEK, V and FIGUEROA, F and Schonbach, C and Klein, J},
title = {{MHC-DRB GENES OF THE PIGTAIL MACAQUE (MACACA-NEMESTRINA) - IMPLICATIONS FOR THE EVOLUTION OF HUMAN DRB GENES}},
journal = {Molecular Biology and Evolution},
year = {1991},
volume = {8},
number = {5},
pages = {563--578}
}
@article{Topping:1998to,
author = {Topping, MG and Millar, JS and Millar, JS},
title = {{Mating patterns and reproductive success in the bushy-tailed woodrat (Neotoma cinerea) as revealed by DNA fingerprinting}},
journal = {Behavioral Ecology and Sociobiology},
year = {1998},
volume = {43},
number = {2},
pages = {115--124}
}
@article{Lehmann:2007jc,
author = {Lehmann, L and Keller, L and West, S and Roze, D},
title = {{Group selection and kin selection: Two concepts but one process}},
journal = {Proceedings of the National Academy of Sciences},
year = {2007},
volume = {104},
number = {16},
pages = {6736--6739},
month = apr
}
@article{Stockley:1999wx,
author = {Stockley, P},
title = {{Sperm selection and genetic incompatibility: does relatedness of mates affect male success in sperm competition?}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1999},
volume = {266},
number = {1429},
pages = {1663--1669}
}
@article{Johnson:2010bw,
author = {Johnson, P C D and Hadfield, J D and Webster, L M I and Adam, A and Mable, B K and Keller, L F},
title = {{Bayesian paternity analysis and mating patterns in a parasitic nematode, Trichostrongylus tenuis}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {6},
pages = {573--582},
month = oct
}
@article{Oday:2008dt,
author = {O'day, Kira},
title = {{Gut Reaction: Pyrosequencing Provides the Poop on Distal Gut Bacteria}},
journal = {PLOS Biology},
year = {2008},
volume = {6},
number = {11},
pages = {e295}
}
@article{Simola:2013if,
author = {Simola, D F and Simola, D F and Wissler, L and Wissler, L and Donahue, G and Donahue, G and Waterhouse, R M and Waterhouse, R M and Helmkampf, M and Helmkampf, M and Roux, J and Roux, J and Nygaard, S and Nygaard, S and Glastad, K M and Glastad, K M and Hagen, D E and Hagen, D E and Viljakainen, L and Viljakainen, L and Reese, J T and Reese, J T and Hunt, B G and Hunt, B G and Graur, D and Graur, D and Elhaik, E and Elhaik, E and Kriventseva, E V and Kriventseva, E V and Wen, J and Wen, J and Parker, B J and Parker, B J and Cash, E and Cash, E and Privman, E and Privman, E and Childers, C P and Childers, C P and Munoz-Torres, M C and Munoz-Torres, M C and Boomsma, J J and Bornberg-Bauer, E and Bornberg-Bauer, E and Currie, C R and Currie, C R and Elsik, C G and Elsik, C G and Suen, G and Suen, G and Goodisman, M A D and Goodisman, M A D and Keller, L and Keller, L and Liebig, J and Liebig, J and Rawls, A and Rawls, A and Reinberg, D and Reinberg, D and Smith, C D and Smith, C D and Smith, C R and Smith, C R and Tsutsui, N and Tsutsui, N and Wurm, Y and Wurm, Y and Zdobnov, E M and Zdobnov, E M and Berger, S L and Berger, S L and Gadau, J and Gadau, J},
title = {{Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality}},
journal = {Genome Research},
year = {2013},
volume = {23},
number = {8},
pages = {1235--1247},
month = aug
}
@article{Hegyi:2007jb,
author = {Hegyi, G and Rosivall, B and Szollosi, E and Hargitai, R and Eens, M and Torok, J},
title = {{A role for female ornamentation in the facultatively polygynous mating system of collared flycatchers}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {6},
pages = {1116--1122},
month = aug
}
@article{Herr:2004io,
author = {Herr, Jan and Rosell, Frank},
title = {{Use of space and movement patterns in monogamous adult Eurasian beavers (Castor fiber)}},
journal = {Journal of Zoology},
year = {1999},
volume = {262},
number = {3},
pages = {257--264}
}
@article{Anonymous:2012bp,
author = {STEFANINI, A and DURON, O},
title = {{Exploring the effect of the Cardinium endosymbiont on spiders}},
journal = {Journal of Evolutionary Biology},
year = {2012},
volume = {25},
number = {8},
pages = {1521--1530},
month = may
}
@article{Lupold:2009ju,
author = {L{\"u}pold, Stefan and Linz, George M and Birkhead, Tim R},
title = {{Sperm design and variation in the New World blackbirds (Icteridae)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {6},
pages = {899--909},
month = mar
}
@article{Dethlefsen:2007gp,
author = {Dethlefsen, Les and McFall-Ngai, Margaret and Relman, David A},
title = {{An ecological and evolutionary perspective on human{\textendash}microbe mutualism and disease}},
journal = {Nature},
year = {2007},
volume = {449},
number = {7164},
pages = {811--818},
month = oct
}
@article{Matzkin:2009ip,
author = {Matzkin, Luciano M and Markow, Therese A},
title = {{Transcriptional regulation of metabolism associated with the increased desiccation resistance of the cactophilic \textit{Drosophila} mojavensis.}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {4},
pages = {1279--1288},
month = aug
}
@article{Young:2010hc,
author = {Young, Matthew D and Young, Matthew D and Wakefield, Matthew J and Wakefield, Matthew J and Smyth, Gordon K and Smyth, Gordon K and Oshlack, Alicia},
title = {{Gene ontology analysis for RNA-seq: accounting for selection bias}},
journal = {Genome Biology},
year = {2010},
volume = {11},
number = {2},
pages = {R14}
}
@article{Linzmeier:2006dq,
author = {Linzmeier, Rose M and Ganz, Tomas},
title = {{Copy number polymorphisms are not a common feature of innate immune genes}},
journal = {Genomics},
year = {2006},
volume = {88},
number = {1},
pages = {122--126},
month = jul
}
@article{KosakovskyPond:2006hl,
author = {Kosakovsky Pond, S L and Posada, D and Gravenor, M B and Woelk, C H and Frost, S D W},
title = {{GARD: a genetic algorithm for recombination detection}},
journal = {Bioinformatics (Oxford, England)},
year = {2006},
volume = {22},
number = {24},
pages = {3096--3098},
month = dec
}
@article{Harrison:2009fx,
author = {Harrison, F and Barta, Z and Cuthill, I and Sz{\'e}kely, T},
title = {{How is sexual conflict over parental care resolved? A meta-analysis}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {9},
pages = {1800--1812},
month = sep
}
@article{Rest:2013iw,
author = {Rest, J S and Rest, J S and Morales, C M and Morales, C M and Waldron, J B and Waldron, J B and Opulente, D A and Opulente, D A and Fisher, J and Fisher, J and Moon, S and Moon, S and Bullaughey, K and Bullaughey, K and Carey, L B and Carey, L B and Dedousis, D and Dedousis, D},
title = {{Nonlinear Fitness Consequences of Variation in Expression Level of a Eukaryotic Gene}},
journal = {Molecular Biology and Evolution},
year = {2013},
volume = {30},
number = {2},
pages = {448--456},
month = jan
}
@article{Baker:2011el,
author = {Baker, D A and Baker, D A and Russell, S and Russell, S},
title = {{Role of Testis-Specific Gene Expression in Sex-Chromosome Evolution of Anopheles gambiae}},
journal = {Genetics},
year = {2011},
volume = {189},
number = {3},
pages = {1117--1120},
month = nov
}
@article{Parmenter:2011jk,
author = {Parmenter, Robert R. and Parmenter, Robert R. and Kreutzian, Melissa and Kreutzian, Melissa and Moore, Douglas I. and Moore, Douglas I. and Lichtfoot, David C. and Lichtfoot, David C.},
title = {{Short-Term Effects of a Summer Wildfire on a Desert Grassland Arthropod Community in New Mexico}},
journal = {Environmental Entomology},
year = {2011},
volume = {40},
number = {5},
pages = {1051--1066}
}
@article{Vonhof:2006cj,
author = {VONHOF, M J and Barber, D and FENTON, M B and Strobeck, C},
title = {{A tale of two siblings: multiple paternity in big brown bats (Eptesicus fuscus) demonstrated using microsatellite markers}},
journal = {Molecular Ecology},
year = {2005},
volume = {15},
number = {1},
pages = {241--247},
month = dec
}
@article{Wang:2013gz,
author = {Wang, Jiashi and Wang, Jiashi and Lucas, Bronwyn A and Lucas, Bronwyn A and Maquat, Lynne E and Maquat, Lynne E},
title = {{New gene expression pipelines gush lncRNAs}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {5},
pages = {117}
}
@article{Keil:1998ui,
author = {Keil, A and Sachser, N},
title = {{Reproductive benefits from female promiscuous mating in a small mammal}},
journal = {Ethology},
year = {1998},
volume = {104},
number = {11},
pages = {897--903}
}
@article{Lehtonen:2009hq,
author = {Lehtonen, Paula K and Primmer, Craig R and Laaksonen, Toni},
title = {{Different traits affect gain of extrapair paternity and loss of paternity in the pied flycatcher, Ficedula hypoleuca}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {5},
pages = {1103--1110},
month = may
}
@article{Gonsalves:2011fq,
author = {Gonsalves, Sarah E and Moses, Alan M and Razak, Zak and Robert, Francois and Westwood, J Timothy},
title = {{Whole-Genome Analysis Reveals That Active Heat Shock Factor Binding Sites Are Mostly Associated with Non-Heat Shock Genes in \textit{Drosophila} \textit{melanogaster}}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {1},
pages = {e15934},
month = jan
}
@article{GenepopVersion:1995wj,
author = {Raymond, M and Raymond, M and Rousset, F},
title = {{GENEPOP (version 1.2): population-genetics software for exact tests and ecumenicism}},
journal = {Journal of Heredity},
year = {1995},
volume = {86},
number = {3},
pages = {248--249}
}
@article{CAHAIS:2012dp,
author = {Cahais, V and Gayral, P and Tsagkogeorga, G and Melo-Ferreira, J and Bellenghien, M and Weinert, L and Chiari, Y and Belkhir, K and Ranwez, V and Galtier, N},
title = {{Reference-free transcriptome assembly in non-model animals from next-generation sequencing data.}},
journal = {Molecular Ecology Resources},
year = {2012},
month = apr
}
@article{Simmons:2006jm,
author = {Simmons, Leigh W and Beveridge, Maxine and Wedell, Nina and Tregenza, Tom},
title = {{Postcopulatory inbreeding avoidance by female crickets only revealed by molecular markers}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {12},
pages = {3817--3824},
month = oct
}
@article{Anonymous:cQa7EjVw,
author = {Garrigan, Daniel and Garrigan, Daniel and Kingan, Sarah B and Kingan, Sarah B and Geneva, Anthony J and Geneva, Anthony J and andolfatto, Peter and andolfatto, Peter and Clark, andrew G and Thornton, Kevin R and Thornton, Kevin R and Presgraves, Daven C and Presgraves, Daven C},
title = {{Genome sequencing reveals complex speciation in the \textit{Drosophila} \textit{simulans} clade.}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {8},
pages = {1499--1511},
month = aug
}
@article{Korsten:2010df,
author = {Korsten, Peter and Mueller, Jakob C and HERMANNST{\"A}DTER, CHRISTINE and Bouwman, Karen M and Dingemanse, Niels J and Drent, Piet J and Liedvogel, Miriam and Matthysen, Erik and van Oers, Kees and van Overveld, Thijs and Patrick, Samantha C and Quinn, John L and Sheldon, Ben C and Tinbergen, Joost M and Kempenaers, Bart},
title = {{Association between DRD4 gene polymorphism and personality variation in great tits: a test across four wild populations}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {4},
pages = {832--843},
month = jan
}
@article{Yu:2010ko,
author = {Yu, Yao and Ping, Jie and Chen, Hui and Jiao, Longxian and Zheng, Siyuan and Han, Ze-Guang and Hao, Pei and Huang, Jian},
title = {{A comparative analysis of liver transcriptome suggests divergent liver function among human, mouse and rat}},
journal = {Genomics},
year = {2010},
volume = {96},
number = {5},
pages = {281--289},
month = nov
}
@article{Holmes:1994wu,
author = {Holmes, KK},
title = {{Human ecology and behavior and sexually transmitted bacterial infections}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {7},
pages = {2448--2455}
}
@article{Chapple:2005co,
journal = {Molecular Ecology},
volume = {14},
number = {4}
}
@article{OHUigin:1993wq,
author = {OHUigin, C and BONTROP, R and Klein, J},
title = {{NONHUMAN PRIMATE MHC-DRB SEQUENCES - A COMPILATION}},
journal = {Immunogenetics},
year = {1993},
volume = {38},
number = {3},
pages = {165--183}
}
@book{andersson:1994tl,
author = {andersson, M},
title = {{Sexual Selection}},
publisher = {Princeton University Press},
year = {1994},
address = {Princeton, NJ},
month = mar
}
@article{anderholm:2009cj,
author = {anderholm, Sofia and Waldeck, Peter and van der Jeugd, Henk P and Marshall, Rupert C and Larsson, Kjell and andersson, Malte},
title = {{Colony kin structure and host-parasite relatedness in the barnacle goose}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {23},
pages = {4955--4963},
month = dec
}
@article{Sheth:2012hi,
author = {Sheth, Sameer A and Sheth, Sameer A and Mian, Matthew K and Mian, Matthew K and Patel, Shaun R and Patel, Shaun R and Asaad, Wael F and Asaad, Wael F and Williams, Ziv M and Williams, Ziv M and Dougherty, Darin D and Dougherty, Darin D and Bush, George and Bush, George and Eskandar, Emad N and Eskandar, Emad N},
title = {{Human dorsal anterior cingulate cortex neurons mediate ongoing behavioural adaptation}},
journal = {Nature},
year = {2012},
volume = {488},
number = {7410},
pages = {218--221},
month = jun
}
@article{Peng:2013eu,
author = {Peng, Yu and Peng, Yu and Leung, Henry C M and Leung, Henry C M and Yiu, Siu-Ming and Lv, Ming-Ju and Lv, Ming-Ju and Zhu, Xin-Guang and Zhu, Xin-Guang and Chin, Francis Y L and Chin, Francis Y L},
title = {{IDBA-tran: a more robust \textit{de novo} \textit{de Bruijn} graph assembler for transcriptomes with uneven expression levels.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {13},
pages = {i326--i334},
month = jul
}
@article{Zhai:2007ib,
author = {Zhai, Weiwei and Slatkin, Montgomery and Nielsen, Rasmus},
title = {{Exploring Variation in the d N /d S Ratio Among Sites and Lineages Using Mutational Mappings: Applications to the Influenza Virus}},
journal = {Journal of Molecular Evolution},
year = {2007},
volume = {65},
number = {3},
pages = {340--348},
month = sep
}
@article{Guiher:2008fi,
author = {Guiher, Timothy J and Burbrink, Frank T},
title = {{Demographic and phylogeographic histories of two venomous North American snakes of the genus Agkistrodon}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2008},
volume = {48},
number = {2},
pages = {543--553},
month = aug
}
@article{Goldfeder:2011ep,
author = {Goldfeder, Rachel L and Goldfeder, Rachel L and Parker, Stephen C J and Parker, Stephen C J and Ajay, Subramanian S and Ajay, Subramanian S and Ozel Abaan, Hatice and Ozel Abaan, Hatice and Margulies, Elliott H},
title = {{A bioinformatics approach for determining sample identity from different lanes of high-throughput sequencing data.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {8},
pages = {e23683}
}
@article{Pagel:1997ui,
author = {Pagel, M},
title = {{Inferring evolutionary processes from phylogenies}},
journal = {Zoologica Scripta},
year = {1997},
volume = {26},
number = {4},
pages = {331--348}
}
@article{Boselt:2009fb,
author = {B{\"o}selt, Iris and R{\"o}mpler, Holger and Hermsdorf, Thomas and Thor, Doreen and Busch, Wibke and Schulz, Angela and Sch{\"o}neberg, Torsten},
title = {{Involvement of the V2 vasopressin receptor in adaptation to limited water supply.}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {5},
pages = {e5573},
month = may
}
@article{Zeh:1997um,
author = {Zeh, JA and Zeh, DW},
title = {{The evolution of polyandry .2. Post-copulatory defences against genetic incompatibility}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1378},
pages = {69--75}
}
@article{Blouin:2003et,
author = {Blouin, Michael S},
title = {{DNA-based methods for pedigree reconstruction and kinship analysis in natural populations}},
journal = {Trends In Ecology {\&} Evolution},
year = {2003},
volume = {18},
number = {10},
pages = {503--511},
month = oct
}
@article{Keller:1994vh,
author = {Keller, L},
title = {{REWARDS OF PROMISCUITY}},
journal = {Nature},
year = {1994},
volume = {372},
number = {6503},
pages = {229--230}
}
@article{Vassilakos:2009ek,
author = {Vassilakos, D and Natoli, A and Dahlheim, M and Hoelzel, A R},
title = {{Balancing and Directional Selection at Exon-2 of the MHC DQB1 Locus among Populations of Odontocete Cetaceans}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {26},
number = {3},
pages = {681--689},
month = dec
}
@article{SEARCY:1989tc,
author = {SEARCY, WA and YASUKAWA, K},
title = {{ALTERNATIVE MODELS OF TERRITORIAL POLYGYNY IN BIRDS}},
journal = {The American Naturalist},
year = {1989},
volume = {134},
number = {3},
pages = {323--343}
}
@article{Segal:2009jv,
author = {Segal, Eran and Widom, Jonathan},
title = {{From DNA sequence to transcriptional behaviour: a quantitative approach}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {7},
pages = {443--456},
month = jul
}
@article{vanHorn:2000ud,
author = {van Horn, RC and Douglass, RJ},
title = {{Disinfectant effects on capture rates of deer mice (\textit{Peromyscus} \textit{maniculatus})}},
journal = {American Midland Naturalist},
year = {2000},
volume = {143},
number = {1},
pages = {257--260}
}
@article{Porschmann:2010ii,
author = {P{\"o}rschmann, Ulrich and Trillmich, Fritz and Mueller, Birte and Wolf, Jochen B W},
title = {{Male reproductive success and its behavioural correlates in a polygynous mammal, the Gal{\'a}pagos sea lion (Zalophus wollebaeki)}},
journal = {Molecular Ecology},
pages = {no--no}
}
@article{Botero:2012fk,
author = {Botero, Carlos A and Botero, Carlos A and Rubenstein, Dustin R},
title = {{Fluctuating Environments, Sexual Selection and the Evolution of Flexible Mate Choice in Birds}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e32311},
month = feb
}
@article{SchmidtNielsen:1948tq,
author = {Schmidt-Nielsen, K and Schmidt-Nielsen, B and {Schneiderman, H}},
title = {{Salt Excretion in Desert Mammals}},
journal = {American Journal of Physiology},
year = {1948},
volume = {154},
number = {1},
pages = {163--166}
}
@article{Calsbeek:2009jq,
author = {Calsbeek, Ryan and Bonvini, Lauren and Cox, Robert M},
title = {{GEOGRAPHIC VARIATION, FREQUENCY-DEPENDENT SELECTION, AND THE MAINTENANCE OF A FEMALE-LIMITED POLYMORPHISM}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {1},
pages = {116--125},
month = jan
}
@article{Kaeuffer:2004hz,
author = {Kaeuffer, R and Pontier, D and Devillard, S and Perrin, N},
title = {{Effective size of two feral domestic cat populations (Felis catus L.): effect of the mating system}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {2},
pages = {483--490},
month = jan
}
@article{Altizer:2003gk,
author = {Altizer, Sonia and Nunn, Charles L and Thrall, Peter H and Gittleman, John L and Antonovics, Janis and Cunningham, andrew A and Dobson, andrew P and Ezenwa, Vanessa and Jones, Kate E and Pedersen, Amy B and Poss, Mary and Pulliam, Juliet R C},
title = {{S OCIALO RGANIZATION ANDP ARASITER ISK INM AMMALS: Integrating Theory and Empirical Studies}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2003},
volume = {34},
number = {1},
pages = {517--547},
month = nov
}
@article{HARCOURT:1991wt,
author = {HARCOURT, AH},
title = {{SPERM COMPETITION AND THE EVOLUTION OF NONFERTILIZING SPERM IN MAMMALS}},
journal = {Evolution},
year = {1991},
volume = {45},
number = {2},
pages = {314--328}
}
@article{Arad:2010cu,
author = {Arad, Z and Mizrahi, T and Goldenberg, S and Heller, J},
title = {{Natural annual cycle of heat shock protein expression in land snails: desert versus Mediterranean species of Sphincterochila}},
journal = {Journal of Experimental Biology},
year = {2010},
volume = {213},
number = {20},
pages = {3487--3495},
month = oct
}
@incollection{Wishart:2008fb,
author = {Wishart, David S},
title = {{Metabolomics: A Complementary Tool in Renal Transplantation}},
booktitle = {Proteomics for the Investigation of Acute Kidney Injury},
year = {2008},
pages = {76--87},
publisher = {KARGER},
address = {Basel},
month = apr
}
@article{Fletcher:2009wu,
author = {Fletcher, Will},
title = {{INDELible: A Flexible Simulator of Biological Sequence Evolution}},
year = {2009},
pages = {1--26},
month = apr
}
@article{Li:2010bb,
author = {Li, Dong and Guo, Yiran and Shao, Haojing and Tellier, Laurent C and Wang, Jun and Xiang, Zhonghuai and Xia, Qingyou},
title = {{Genetic diversity, molecular phylogeny and selection evidence of the silkworm mitochondria implicated by complete resequencing of 41 genomes}},
journal = {BMC Evolutionary Biology},
year = {2010},
volume = {10},
number = {1},
pages = {81}
}
@article{Verner:1966ta,
author = {Verner, J and Verner, J and Willson, M F and Willson, M F},
title = {{Influence of habitats on mating systems of North American passerine birds}},
journal = {Ecology},
year = {1966},
volume = {47},
number = {1},
pages = {143--147}
}
@article{BesterMeredith:2007jz,
author = {Bester-Meredith, Janet K and Marler, Catherine A},
title = {{Social Experience During Development and Female offspring Aggression in \textit{Peromyscus} Mice}},
journal = {Ethology},
year = {2007},
volume = {113},
number = {9},
pages = {889--900},
month = sep
}
@article{Park:2001ve,
author = {Park, JH and Lee, YJ and Na, SY and Cho, EW and Kim, KL},
title = {{HLA-DR expression in B-lymphocytes in vitro is not suppressed by the absence of exogenous antigens}},
journal = {Molecules and Cells},
year = {2001},
volume = {12},
number = {2},
pages = {164--172}
}
@article{Brandley:2005by,
author = {Brandley, Matthew and Schmitz, andreas and Reeder, Tod},
title = {{Partitioned Bayesian Analyses, Partition Choice, and the Phylogenetic Relationships of Scincid Lizards}},
journal = {Systematic Biology},
year = {2005},
volume = {54},
number = {3},
pages = {373--390},
month = jun
}
@article{Hoffman:2009vq,
author = {Hoffman, Joseph I and Clutton-Brock, TH and Sheldon, Ben C and Forcada, Jaume},
title = {{GENETIC ANALYSIS OF TWINNING IN ANTARCTIC FUR SEALS (ARCTOCEPHALUS GAZELLA)}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {3},
pages = {621--628}
}
@article{Smith:2011ht,
author = {Smith, C R and Smith, C D and Robertson, H M and Helmkampf, M and Zimin, A and Yandell, M and Holt, C and Hu, H and Abouheif, E and Benton, R and Cash, E and Croset, V and Currie, C R and Elhaik, E and Elsik, C G and Fave, M J and Fernandes, V and Gibson, J D and Graur, D and Gronenberg, W and Grubbs, K J and Hagen, D E and Viniegra, A S I and Johnson, B R and Johnson, R M and Khila, A and Kim, J W and Mathis, K A and Munoz-Torres, M C and Murphy, M C and Mustard, J A and Nakamura, R and Niehuis, O and Nigam, S and Overson, R P and Placek, J E and Rajakumar, R and Reese, J T and Suen, G and Tao, S and Torres, C W and Tsutsui, N D and Viljakainen, L and Wolschin, F and Gadau, J},
title = {{Draft genome of the red harvester ant Pogonomyrmex barbatus}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {14},
pages = {5667--5672},
month = apr
}
@article{GutierrezEspeleta:2001ui,
author = {Gutierrez-Espeleta, GA and Gutierrez-Espeleta, GA and Hedrick, PW and Kalinowski, ST and Kalinowski, ST and Garrigan, D and Garrigan, D and Boyce, WM and Boyce, WM},
title = {{Is the decline of desert bighorn sheep from infectious disease the result of low MHC variation?}},
journal = {Heredity},
year = {2001},
volume = {86},
pages = {439--450}
}
@article{LOEHLE:1995ui,
author = {Loehle, C},
title = {{Social barriers to pathogen transmission in wild animal populations}},
journal = {Ecology},
year = {1995},
volume = {76},
number = {2},
pages = {326--335}
}
@article{Vilcinskas:2012dm,
author = {Vilcinskas, A and Vilcinskas, A and Mukherjee, K and Mukherjee, K and Vogel, H and Vogel, H},
title = {{Expansion of the antimicrobial peptide repertoire in the invasive ladybird Harmonia axyridis}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1750},
pages = {20122113--20122113},
month = nov
}
@article{Smith:2010jo,
author = {Smith, Steve and Mang, Thomas and de Bellocq, Joelle Go{\"u}y and Schaschl, Helmut and Zeitlhofer, Claudia and Hackl{\"a}nder, Klaus and Suchentrunk, Franz},
title = {{Homozygosity at a class II MHC locus depresses female reproductive ability in European brown hares}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {19},
pages = {4131--4143},
month = aug
}
@article{Hillenius:1992wd,
author = {Hillenius, W J},
title = {{The evolution of nasal turbinates and mammalian endothermy}},
journal = {Paleobiology},
year = {1992},
pages = {17--29}
}
@article{Xue:2009dg,
author = {Xue, Y and Zhang, X and Huang, N and Daly, A and Gillson, C J and MacArthur, D G and Yngvadottir, B and Nica, A C and Woodwark, C and Chen, Y and Conrad, D F and Ayub, Q and Mehdi, S Q and Li, P and Tyler-Smith, C},
title = {{Population Differentiation as an Indicator of Recent Positive Selection in Humans: An Empirical Evaluation}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {3},
pages = {1065--1077},
month = nov
}
@article{Lemazurier:2001wj,
author = {Lemazurier, E and Sourdaine, P and Nativelle, C and Plainfosse, B and Seralini, GE},
title = {{Aromatase gene expression in the stallion}},
journal = {Molecular and Cellular Endocrinology},
year = {2001},
volume = {178},
number = {1-2},
pages = {133--139}
}
@article{BRANT:1965vt,
author = {BRANT, DH and KAVANAU, JL},
title = {{EXPLORATION AND MOVEMENT PATTERNS OF THE CANYON MOUSE PEROMYSCUS-CRINITUS IN AN EXTENSIVE LABORATORY ENCLOSURE}},
journal = {Ecology},
year = {1965},
volume = {46},
number = {4},
pages = {452--461}
}
@article{Gilbert:2010jn,
author = {Gilbert, Jack A and Field, Dawn and Swift, Paul and Thomas, Simon and Cummings, Denise and Temperton, Ben and Weynberg, Karen and Huse, Susan and Hughes, Margaret and Joint, Ian and Somerfield, Paul J and M{\"u}hling, Martin},
title = {{The Taxonomic and Functional Diversity of Microbes at a Temperate Coastal Site: A {\textquoteleft}Multi-Omic{\textquoteright} Study of Seasonal and Diel Temporal Variation}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {11},
pages = {e15545},
month = nov
}
@article{Bambha:2010bj,
author = {Bambha, Kiran and Kim, W Ray and Rosen, Charles B and Pedersen, Rachel A and Rys, Cynthia and Kolbert, Christopher P and Cunningham, Julie M and Therneau, Terry M},
title = {{Endothelial Nitric Oxide Synthase Gene Variation Associated With Chronic Kidney Disease After Liver Transplant}},
journal = {Mayo Clinic Proceedings},
year = {2010},
volume = {85},
number = {9},
pages = {814--820},
month = sep
}
@article{Agalmaanautomated:2013kw,
author = {Dunn, Casey W and Howison, Mark and Zapata, Felipe},
title = {{Agalma: an automated phylogenomics workflow}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {330},
month = nov
}
@article{YAMAGUCHI:2013fz,
author = {YAMAGUCHI, Y and Suzuki, T and Mizoro, Y and Kori, H and Okada, K and Chen, Y and Fustin, J M and Yamazaki, F and Mizuguchi, N and Zhang, J and Dong, X and Tsujimoto, G and Okuno, Y and Doi, M and Okamura, H},
title = {{Mice Genetically Deficient in Vasopressin V1a and V1b Receptors Are Resistant to Jet Lag}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6154},
pages = {85--90},
month = oct
}
@article{ROY:1994ub,
author = {ROY, MS and GIRMAN, DJ and TAYLOR, AC and WAYNE, RK},
title = {{THE USE OF MUSEUM SPECIMENS TO RECONSTRUCT THE GENETIC-VARIABILITY AND RELATIONSHIPS OF EXTINCT POPULATIONS}},
journal = {Experientia},
year = {1994},
volume = {50},
number = {6},
pages = {551--557}
}
@article{Palstra:2009fb,
author = {Palstra, F P and O'Connell, M F and Ruzzante, D E},
title = {{Age Structure, Changing Demography and Effective Population Size in Atlantic Salmon (Salmo salar)}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {4},
pages = {1233--1249},
month = aug
}
@article{Wang:2011db,
author = {Wang, Fangkun and Wang, Fangkun and Hu, Sen and Hu, Sen and Liu, Wenxing and Liu, Wenxing and Qiao, Zujian and Qiao, Zujian and Gao, Yuzhe and Gao, Yuzhe and Bu, Zhigao and Bu, Zhigao},
title = {{Deep-Sequencing Analysis of the Mouse Transcriptome Response to Infection with Brucella melitensis Strains of Differing Virulence}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {12},
pages = {e28485},
month = dec
}
@article{Bshary:2008gz,
author = {Bshary, Redouan and Grutter, Alexandra S and Willener, Astrid S T and Leimar, Olof},
title = {{Pairs of cooperating cleaner fish provide better service quality than singletons}},
journal = {Nature},
year = {2008},
volume = {455},
number = {7215},
pages = {964--966},
month = oct
}
@article{Otter:2001ux,
author = {Otter, KA and Stewart, IRK and McGregor, PK and McGregor, PK and Terry, AMR and Terry, AMR and Dabelsteen, T and Dabelsteen, T and Burke, T},
title = {{Extra-pair paternity among Great Tits Parus major following manipulation of male signals}},
journal = {Journal of Avian Biology},
year = {2001},
volume = {32},
number = {4},
pages = {338--344}
}
@article{Oppliger:2007wd,
author = {Oppliger, Anne and Degen, Loic and Bouteiller-Reuter, Caroline and John-Alder, Henry-B},
title = {{Promiscuity and high level of multiple paternity in common wall lizards (Podarcis muralis): data from microsatellite markers}},
journal = {Amphibia-Reptilia},
year = {2007},
volume = {28},
number = {2},
pages = {301--303}
}
@article{Marshall:2009jt,
author = {Marshall, H D and Coulson, M W and Carr, S M},
title = {{Near Neutrality, Rate Heterogeneity, and Linkage Govern Mitochondrial Genome Evolution in Atlantic Cod (Gadus morhua) and Other Gadine Fish}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {26},
number = {3},
pages = {579--589},
month = dec
}
@article{Shoemaker:1992vy,
author = {Shoemaker, D Dewayne and Costa, J T and Ross, Kenneth G.},
title = {{Estimates of heterozygosity in two social insects using a large number of electrophoretic markers}},
journal = {Heridity},
year = {1992},
volume = {69},
pages = {573--573}
}
@article{Monteiro:2012iz,
title = {{Stronger Sexual Selection in Warmer Waters: The Case of a Sex Role Reversed Pipefish}},
year = {2012},
volume = {7},
number = {8},
pages = {e44251},
month = aug
}
@article{Fernandez:2006ep,
author = {Fernandez, J and TORO, M A},
title = {{A new method to estimate relatedness from molecular markers}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {6},
pages = {1657--1667},
month = feb
}
@article{Setchell:2005ef,
author = {Setchell, Joanna M and Charpentier, Marie and Wickings, E Jean},
title = {{Mate guarding and paternity in mandrills: factors influencing alpha male monopoly}},
journal = {Animal Behaviour},
year = {2005},
volume = {70},
number = {5},
pages = {1105--1120},
month = nov
}
@article{Weir:2007im,
author = {Weir, J T and Schluter, D},
title = {{The latitudinal gradient in recent speciation and extinction rates of birds and mammals.}},
journal = {Science (New York, NY)},
year = {2007},
volume = {315},
number = {5818},
pages = {1574--1576},
month = mar
}
@article{De:2004dj,
author = {De, P},
title = {{Sexual network analysis of a gonorrhoea outbreak}},
journal = {Sexually Transmitted Infections},
year = {2004},
volume = {80},
number = {4},
pages = {280--285},
month = aug
}
@article{Davey:2012jt,
author = {Davey, John W and Davey, John W and Cezard, Timothee and Fuentes-Utrilla, Pablo and Fuentes-Utrilla, Pablo and Eland, Cathlene and Eland, Cathlene and Gharbi, Karim and Blaxter, Mark L},
title = {{Special features of RAD Sequencing data: implications for genotyping}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = oct
}
@article{Walde:2009wf,
author = {Walde, andrew D and Walde, andrew D and Walde, Angela M and Walde, Angela M and Delaney, David K and Delaney, David K and Fater, Larry L and Fater, Larry L},
title = {{BURROWS OF DESERT TORTOISES (GOPHERUS AGASSIZII) AS THERMAL REFUGIA FOR HORNED LARKS (EREMOPHILA ALPESTRIS) IN THE MOJAVE DESERT}},
journal = {Southwestern Naturalist},
year = {2009},
volume = {54},
number = {4},
pages = {375--381}
}
@article{Krackow:2008hn,
author = {Krackow, Sven and K{\"o}nig, Barbara},
title = {{Microsatellite length polymorphisms associated with dispersal-related agonistic onset in male wild house mice (Mus musculus domesticus)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {5},
pages = {813--820},
month = oct
}
@article{Tracy:2002kt,
author = {Tracy, Randall and Walsberg, Glenn},
title = {{Kangaroo rats revisited: re-evaluating a classic case of desert survival}},
journal = {Oecologia},
year = {2002},
volume = {133},
number = {4},
pages = {449--457},
month = dec
}
@article{Storz:2008bd,
author = {Storz, J F and Hoffmann, F G and Opazo, J C and Moriyama, H},
title = {{Adaptive Functional Divergence Among Triplicated ~-Globin Genes in Rodents}},
journal = {Genetics},
year = {2008},
volume = {178},
number = {3},
pages = {1623--1638},
month = feb
}
@article{Jones:1999up,
author = {Jones, AG and Rosenqvist, G and Berglund, A and Avise, JC},
title = {{The genetic mating system of a sex-role-reversed pipefish (Syngnathus typhle): a molecular inquiry}},
journal = {Behavioral Ecology and Sociobiology},
year = {1999},
volume = {46},
number = {5},
pages = {357--365}
}
@article{Konczal:2013cy,
author = {Konczal, M and Koteja, P and Stuglik, M T and Radwan, J and Babik, W},
title = {{Accuracy of allele frequency estimation using pooled RNA-Seq}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = oct
}
@article{Pryke:2007gc,
journal = {Journal of Evolutionary Biology},
year = {2007},
volume = {20},
number = {4},
month = jul
}
@article{Ilmonen:2009el,
author = {Ilmonen, Petteri and Stundner, Gloria and Thosz, Michaela and Penn, Dustin J},
title = {{Females prefer the scent of outbred males: good-genes-as-heterozygosity?}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {104}
}
@article{Carmichael:1993tg,
author = {Carmichael, L M and Moore, J and Bjostad, L B},
title = {{Parasitism and decreased response to sex pheromones in malePeriplaneta americana (Dictyoptera: Blattidae)}},
journal = {Journal of Insect Behavior},
year = {1993},
volume = {6},
number = {1},
pages = {25--32}
}
@article{Wolf:2013hd,
author = {Wolf, Jochen B W},
title = {{Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial}},
journal = {Molecular Ecology Resources},
year = {2013},
volume = {13},
number = {4},
pages = {559--572},
month = apr
}
@article{Zahavi:2003uo,
author = {Zahavi, A},
title = {{ANNIVERSARY ESSAY Indirect selection and individual selection in sociobiology: my personal views on theories of social behaviour}},
journal = {Animal Behaviour},
year = {2003},
volume = {65},
pages = {859--863}
}
@article{Brenner:2000tp,
author = {Brenner, S and Brenner, S and Johnson, M and Johnson, M and Bridgham, J and Bridgham, J and Golda, G and Golda, G and Lloyd, DH and Lloyd, DH and Johnson, D and Johnson, D and Luo, SJ and Luo, SJ and McCurdy, S and McCurdy, S and Foy, M and Foy, M and Ewan, M and Ewan, M and Roth, R and Roth, R and George, D and George, D and Eletr, S and Eletr, S and Albrecht, G and Albrecht, G and Vermaas, E and Vermaas, E and Williams, SR and Williams, SR and Moon, K and Moon, K and Burcham, T and Burcham, T and Pallas, M and Pallas, M and DuBridge, RB and DuBridge, RB and Kirchner, J and Kirchner, J and Fearon, K and Fearon, K and Mao, J and Mao, J and Corcoran, K and Corcoran, K},
title = {{Gene expression analysis by massively parallel signature sequencing (MPSS) on microbead arrays}},
journal = {Nature Biotechnology},
year = {2000},
volume = {18},
number = {6},
pages = {630--634}
}
@article{Reyer:1999wy,
author = {Reyer, HU and Frei, G and Som, C},
title = {{Cryptic female choice: frogs reduce clutch size when amplexed by undesired males}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1999},
volume = {266},
number = {1433},
pages = {2101--2107}
}
@article{Whitehead:2006dj,
author = {Whitehead, A and Crawford, DL and Crawford, DL},
title = {{Neutral and adaptive variation in gene expression}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2006},
volume = {103},
number = {14},
pages = {5425--5430}
}
@article{Zhang:2010dw,
author = {Zhang, S and Cao, J and Kong, Y M and Scheuermann, R H},
title = {{GO-Bayes: Gene Ontology-based overrepresentation analysis using a Bayesian approach}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {7},
pages = {905--911},
month = mar
}
@article{FerrerAdmetlla:2008vx,
author = {Ferrer-Admetlla, Anna and Bosch, Elena and Sikora, Martin and Marqu{\`e}s-Bonet, Tom{\`a}s and Ramirez-Soriano, Anna and Muntasell, Aura and Navarro, Arcadi and Lazarus, Ross and Calafell, Francesc and Bertranpetit, Jaume and Casals, Ferran},
title = {{Balancing selection is the main force shaping the evolution of innate immunity genes}},
journal = {Journal of Immunology},
year = {2008},
volume = {181},
number = {2},
pages = {1315--1322}
}
@article{Rico:2008hy,
author = {Rico, Yessica and Lorenzo, Consuelo and Gonzalez-Cozatl, Francisco X and Espinoza, Eduardo},
title = {{Phylogeography and population structure of the endangered Tehuantepec jackrabbit Lepus flavigularis: implications for conservation}},
journal = {Conservation Genetics},
year = {2007},
volume = {9},
number = {6},
pages = {1467--1477},
month = dec
}
@article{Beltran:2009eu,
author = {Beltran, Sophie and Boissier, Jerome},
title = {{Are schistosomes socially and genetically monogamous?}},
journal = {Parasitology Research},
year = {2008},
volume = {104},
number = {2},
pages = {481--483},
month = oct
}
@article{Bouzat:2004fa,
author = {Bouzat, Juan L and Bouzat, Juan L and Johnson, Kristine and Johnson, Kristine},
title = {{Genetic structure among closely spaced leks in a peripheral population of lesser prairie-chickens}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {2},
pages = {499--505}
}
@article{Lewis:2005db,
author = {Lewis, Sara M and Kobel, Annika and Fedina, Tatyana and Beeman, Richard W},
title = {{Sperm stratification and paternity success in red flour beetles}},
journal = {Physiological Entomology},
year = {2005},
volume = {30},
number = {3},
pages = {303--307},
month = sep
}
@article{Tabadkani:2012jl,
author = {Tabadkani, Seyed Mohammad and Nozari, Jamasb and Lihoreau, Mathieu},
title = {{Inbreeding and the evolution of sociality in arthropods}},
journal = {Die Naturwissenschaften},
year = {2012},
month = aug
}
@article{Anonymous:HDgFPchP,
title = {{Water Physiology}},
year = {2010},
pages = {1--6},
month = dec
}
@article{Manolio:2009jp,
author = {Manolio, Teri A and Collins, Francis S and Cox, Nancy J and Goldstein, David B and Hindorff, Lucia A and Hunter, David J and McCarthy, Mark I and Ramos, Erin M and Cardon, Lon R and Chakravarti, Aravinda and Cho, Judy H and Guttmacher, Alan E and Kong, Augustine and Kruglyak, Leonid and Mardis, Elaine and Rotimi, Charles N and Slatkin, Montgomery and Valle, David and Whittemore, Alice S and Boehnke, Michael and Clark, andrew G and Eichler, Evan E and Gibson, Greg and Haines, Jonathan L and Mackay, Trudy F C and Mccarroll, Steven A and Visscher, Peter M},
title = {{Finding the missing heritability of complex diseases}},
journal = {Nature},
year = {2009},
volume = {461},
number = {7265},
pages = {747--753},
month = oct
}
@article{Amresco:2011ug,
author = {{Amresco}},
title = {{Amresco Ready PCR Mix Flyer, Lit. No. 01077}},
year = {2011},
pages = {1--2},
month = may
}
@article{Vanhorn:2008ia,
author = {Van Horn, Russell C and Altmann, Jeanne and Alberts, Susan C},
title = {{Can't get there from here: inferring kinship from pairwise genetic relatedness}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {3},
pages = {1173--1180},
month = mar
}
@article{Pollard:2008jo,
author = {Pollard, Kimberly A and Blumstein, Daniel T},
title = {{Time allocation and the evolution of group size}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {5},
pages = {1683--1699},
month = nov
}
@article{Baer:1999wr,
author = {Baer, B and Schmid-Hempel, P},
title = {{Experimental variation in polyandry affects parasite loads and fitness in a bumble-bee}},
journal = {Nature},
year = {1999},
volume = {397},
pages = {151--154},
month = mar
}
@article{Hardling:2005cj,
author = {Hardling, R and Kaitala, A},
title = {{The evolution of repeated mating under sexual conflict}},
journal = {Journal of Evolutionary Biology},
year = {2005},
volume = {18},
number = {1},
pages = {106--115}
}
@article{Snook:2005jg,
author = {Snook, R},
title = {{Sperm in competition: not playing by the numbers}},
journal = {Trends In Ecology {\&} Evolution},
year = {2005},
volume = {20},
number = {1},
pages = {46--53},
month = jan
}
@article{Adimora:2002td,
author = {Adimora, AA and Schoenbach, VJ and Bonas, DM and Martinson, FEA and Donaldson, KH and Stancil, TR},
title = {{Concurrent sexual partnerships among women in the United States}},
journal = {Epidemiology},
year = {2002},
volume = {13},
number = {3},
pages = {320--327}
}
@article{Anonymous:Sg4pjlbn,
title = {{Why are birds{\textquoteright} eggs colourful? Eggshell pigments co-vary with life-history and nesting ecology among British breeding non-passerine birds}},
year = {2012},
pages = {1--16},
month = may
}
@article{ARCE:2012ib,
author = {ARCE, A N and ARCE, A N and JOHNSTON, P R and JOHNSTON, P R and Smiseth, P T and Smiseth, P T and Rozen, D E and Rozen, D E},
title = {{Mechanisms and fitness effects of antibacterial defences in a carrion beetle.}},
journal = {Journal of Evolutionary Biology},
year = {2012},
volume = {25},
number = {5},
pages = {930--937},
month = may
}
@article{Maimon:2010jy,
author = {Maimon, Gaby and Maimon, Gaby and Straw, andrew D and Straw, andrew D and Dickinson, Michael H and Dickinson, Michael H},
title = {{Active flight increases the gain of visual motion processing in \textit{Drosophila}}},
journal = {Nature Publishing Group},
year = {2010},
volume = {13},
number = {3},
pages = {393--399},
month = feb
}
@article{Liu:2010hm,
author = {Liu, Edison T and Pott, Sebastian and Huss, Mikael},
title = {{Q{\&}A: ChIP-seq technologies and the study of gene regulation}},
journal = {BMC biology},
year = {2010},
volume = {8},
number = {1},
pages = {56}
}
@article{Martin:2011ig,
author = {Martin, Julien G A and Festa-Bianchet, Marco},
title = {{Age-independent and age-dependent decreases in reproduction of females}},
journal = {Ecology Letters},
year = {2011},
volume = {14},
number = {6},
pages = {576--581}
}
@article{Yang:2002uj,
author = {Yang, Ziheng and Nielsen, R},
title = {{Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages}},
journal = {Molecular Biology and Evolution},
year = {2002},
volume = {19},
number = {6},
pages = {908--917}
}
@article{Fiala:2003uk,
author = {Fiala, Ivan and Dykov{\'a}, Iva},
title = {{Molecular characterisation of Neoparamoeba strains isolated from gills of Scophthalmus maximus}},
journal = {Diseases of aquatic organisms},
year = {2003},
volume = {55},
number = {1},
pages = {11--16},
month = jun
}
@article{Si:2011ur,
author = {Si, Y and Liu, P and Li, P and Brutnell, T},
title = {{Model-based clustering for rna-seq data}},
journal = {Joint Statistical Meeting},
year = {2011}
}
@article{Krieger:2000vb,
author = {Krieger, MJB and Krieger, MJB and Keller, L},
title = {{Mating frequency and genetic structure of the Argentine ant Linepithema humile}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {2},
pages = {119--126}
}
@article{Starrfelt:2009ev,
author = {Starrfelt, Jostein and Kokko, Hanna},
title = {{Parent-offspring Conflict and the Evolution of Dispersal Distance}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {1},
pages = {38--49},
month = jan
}
@article{Mattdean:2009wt,
author = {Mattdean},
title = {{Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus) }},
year = {2009},
pages = {1--38},
month = apr
}
@article{Nossa:2013uw,
author = {Nossa, Carlos and Havlak, Paul and Yue, Jia-Xing and Lv, Jie and Vincent, Kim and Brockmann, H Jane and Putnam, Nicholas H},
title = {{Joint assembly and genetic mapping of the Atlantic horseshoe crab genome reveals ancient whole genome duplication}},
journal = {arXiv.org},
year = {2013},
eprint = {1309.7402v1},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = sep
}
@article{Brennan:2004in,
author = {Brennan, Catherine A and anderson, Kathryn V},
title = {{D rosophila: The Genetics of Innate Immune Recognition and Response}},
journal = {Annual Review of Immunology},
year = {2004},
volume = {22},
number = {1},
pages = {457--483},
month = apr
}
@article{Pinela:2009ha,
author = {Pinela, A M and Querouil, S and Magalhaes, S and Silva, M A and Prieto, R and Matos, J A and Santos, R S},
title = {{Population genetics and social organization of the sperm whale (Physeter macrocephalus) in the Azores inferred by microsatellite analyses}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2009},
volume = {87},
number = {9},
pages = {802--813},
month = sep
}
@article{Ramos:2009if,
author = {Ramos, Antonio M and Crooijmans, Richard P M A and Affara, Nabeel A and Amaral, andreia J and Archibald, Alan L and Beever, Jonathan E and Bendixen, Christian and Churcher, Carol and Clark, Richard and Dehais, Patrick and Hansen, Mark S and Hedegaard, Jakob and Hu, Zhi-Liang and Kerstens, Hindrik H and Law, andy S and Megens, Hendrik-Jan and Milan, Denis and Nonneman, Danny J and Rohrer, Gary A and Rothschild, Max F and Smith, Tim P L and Schnabel, Robert D and van Tassell, Curt P and Taylor, Jeremy F and Wiedmann, Ralph T and Schook, Lawrence B and Groenen, Martien A M},
title = {{Design of a High Density SNP Genotyping Assay in the Pig Using SNPs Identified and Characterized by Next Generation Sequencing Technology}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6524},
month = aug
}
@article{Dorus:2010fm,
author = {Dorus, Steve and Dorus, Steve and Wasbrough, Elizabeth R and Wasbrough, Elizabeth R and Busby, Jennifer and Busby, Jennifer and Wilkin, Elaine C and Wilkin, Elaine C and Karr, Timothy L and Karr, Timothy L},
title = {{Sperm proteomics reveals intensified selection on mouse sperm membrane and acrosome genes.}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {6},
pages = {1235--1246},
month = jun
}
@article{Benson:2010hy,
author = {Benson, andrew K and Benson, andrew K and Kelly, Scott A and Kelly, Scott A and Legge, Ryan and Legge, Ryan and Ma, Fangrui and Ma, Fangrui and Low, Soo Jen and Low, Soo Jen and Kim, Jaehyoung and Kim, Jaehyoung and Zhang, Min and Zhang, Min and Oh, Phaik Lyn and Oh, Phaik Lyn and Nehrenberg, Derrick and Nehrenberg, Derrick and Hua, Kunjie and Hua, Kunjie and Kachman, Stephen D and Kachman, Stephen D and Moriyama, Etsuko N and Moriyama, Etsuko N and Walter, Jens and Walter, Jens and Peterson, Daniel A and Pomp, Daniel and Pomp, Daniel},
title = {{Individuality in gut microbiota composition is a complex polygenic trait shaped by multiple environmental and host genetic factors.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {44},
pages = {18933--18938},
month = nov
}
@article{Osawa:1992tw,
author = {Osawa, N and Nishida, T},
title = {{Seasonal variation in elytral colour polymorphism in Harmonia axyridis (the ladybird beetle): the role of non-random mating}},
journal = {Heredity},
year = {1992}
}
@article{Timmermans:2008dx,
author = {Timmermans, I and Hefetz, A and Fournier, D and Aron, S},
title = {{Population genetic structure, worker reproduction and thelytokous parthenogenesis in the desert ant Cataglyphis sabulosa}},
journal = {Heredity},
year = {2008},
volume = {101},
number = {6},
pages = {490--498},
month = dec
}
@article{Gibbons:2009fh,
author = {Gibbons, J G and Janson, E M and Hittinger, C T and Johnston, M and Abbot, P and Rokas, A},
title = {{Benchmarking Next-Generation Transcriptome Sequencing for Functional and Evolutionary Genomics}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {12},
pages = {2731--2744},
month = nov
}
@article{Zimin:2013kn,
author = {Zimin, A V and Marcais, G and Puiu, D and Roberts, M and Salzberg, S L and Yorke, J A},
title = {{The MaSuRCA genome assembler}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {21},
pages = {2669--2677},
month = oct
}
@article{Aviles:2012cd,
author = {Aviles, J M and Aviles, J M and Vikan, J R and Vikan, J R and Foss{\o}y, F and Foss{\o}y, F and Antonov, A and Antonov, A and Moksnes, A and Moksnes, A and Roskaft, E and Roskaft, E and Shykoff, J A and Shykoff, J A and Moller, A P and Moller, A P and Stokke, B G and Stokke, B G},
title = {{Egg phenotype matching by cuckoos in relation to discrimination by hosts and climatic conditions}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1735},
pages = {1967--1976},
month = apr
}
@article{Soares:2009kz,
author = {Soares, Ana R and Pereira, Patr{\'\i}cia M and Santos, Bruno and Egas, Concei{\c c}{\~a}o and Gomes, Ana C and Arrais, Joel and Oliveira, Jos{\'e} L and Moura, Gabriela R and Santos, Manuel AS},
title = {{Parallel DNA pyrosequencing unveils new zebrafish microRNAs}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {195}
}
@article{andersson:2007gx,
author = {andersson, Malte and Waldeck, Peter},
title = {{Host?parasite kinship in a female-philopatric bird population: evidence from relatedness trend analysis}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {13},
pages = {2797--2806},
month = jul
}
@article{Forbes:2007gl,
author = {Forbes, Mark R},
title = {{On sex differences in optimal immunity}},
journal = {Trends In Ecology {\&} Evolution},
year = {2007},
volume = {22},
number = {3},
pages = {111--113},
month = mar
}
@article{Suter:2009cz,
author = {Suter, Stefan M and Ermacora, David and Rieille, Nadia and Meyer, Dietrich R},
title = {{A distinct reed bunting dawn song and its relation to extrapair paternity}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {473--480},
month = feb
}
@article{Griffith:1999wi,
author = {Griffith, SC and Stewart, IRK and Dawson, DA and Owens, IPF and Burke, T},
title = {{Contrasting levels of extra-pair paternity in mainland island populations of the house sparrow (Passer domesticus): is there an 'island effect'?}},
journal = {Biological Journal of The Linnean Society},
year = {1999},
volume = {68},
number = {1-2},
pages = {303--316}
}
@article{Piganeau:2009el,
author = {Piganeau, Gwenael and Eyre-Walker, Adam},
title = {{Evidence for Variation in the Effective Population Size of Animal Mitochondrial DNA}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {2},
pages = {e4396},
month = feb
}
@article{Ferrarini:2013kn,
author = {Ferrarini, Marco and Moretto, Marco and Ward, Judson A and urbanovski, Nada and Stevanovi, Vladimir and Giongo, Lara and Viola, Roberto and Cavalieri, Duccio and Velasco, Riccardo and Cestaro, Alessandro and Sargent, Daniel J},
title = {{An evaluation of the PacBio RS platform for sequencing and \textit{de novo} assembly of a chloroplast genome}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {670}
}
@article{Velculescu:1999gy,
author = {Velculescu, Victor E and Madden, Stephen L and Zhang, Lin and Lash, Alex E and Yu, Jian and Rago, Carlo and Lal, Anita and Wang, Clarence J and Beaudry, Gary A and Ciriello, Kristin M and Cook, Brian P and Dufault, Michael R and Ferguson, Anne T and Gao, Yuhong and He, Tong-Chuan and Hermeking, Heiko and Hiraldo, Siewleng K and Hwang, Paul M and Lopez, Marissa A and Luderer, Hilary F and Mathews, Brynna and Petroziello, Joseph M and Polyak, Kornelia and Zawel, Leigh and Zhang, Wen and Zhang, Xiaoming and Zhou, Wei and Haluska, Frank G and Jen, Jin and Sukumar, Saraswati and Landes, Gregory M and Riggins, Gregory J and Vogelstein, Bert and Kinzler, Kenneth W},
journal = {Nature Genetics},
year = {1999},
volume = {23},
number = {4},
pages = {387--388},
month = dec
}
@article{Li:2009cx,
author = {Li, R and Yu, C and Li, Y and Lam, T W and Yiu, S M and Kristiansen, K and Wang, J},
title = {{SOAP2: an improved ultrafast tool for short read alignment}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {15},
pages = {1966--1967},
month = jul
}
@article{PATTERSON:1980ww,
author = {PATTERSON, CB and ERCKMANN, WJ and Orians, G H},
title = {{An experimental-study of parental investment and polygyny in male blackbirds}},
journal = {The American Naturalist},
year = {1980},
volume = {116},
number = {6},
pages = {757--769}
}
@article{Lane:2013hx,
author = {Lane, Amanda Kelly and Hayashi, Cheryl Y and Whitworth, Gregg B and Ayoub, Nadia A},
title = {{Complex gene expression in the dragline silk producing glands of the Western black widow (Latrodectus hesperus)}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {846}
}
@article{Schliebe:2008bq,
author = {Schliebe, N and Strotmann, R and Busse, K and Mitschke, D and Biebermann, H and Schomburg, L and Kohrle, J and Bar, J and Rompler, H and Wess, J and Schoneberg, T and Sangkuhl, K},
title = {{V2 vasopressin receptor deficiency causes changes in expression and function of renal and hypothalamic components involved in electrolyte and water homeostasis}},
journal = {AJP: Renal Physiology},
year = {2008},
volume = {295},
number = {4},
pages = {F1177--F1190},
month = jul
}
@article{Juarez:2008hs,
author = {Ju{\'a}rez, Paula and Ju{\'a}rez, Paula and Comas, I{\~n}aki and Comas, I{\~n}aki and Gonz{\'a}lez-Candelas, Fernando and Gonz{\'a}lez-Candelas, Fernando and Calvete, Juan J and Calvete, Juan J},
title = {{Evolution of Snake Venom Disintegrins by Positive Darwinian Selection}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {11},
pages = {2391--2407}
}
@article{Holland:2012hm,
author = {Holland, C V and Hamilton, C M},
title = {{The significance of cerebral toxocariasis: a model system for exploring the link between brain involvement, behaviour and the immune response}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {78--83},
month = dec
}
@article{HIXON:1987wi,
author = {HIXON, MA},
title = {{TERRITORY AREA AS A DETERMINANT OF MATING SYSTEMS}},
journal = {American Zoologist},
year = {1987},
volume = {27},
number = {2},
pages = {229--247}
}
@article{SWARBRICK:1995vp,
author = {SWARBRICK, PA and SWARBRICK, PA and SCHWAIGER, FW and Epplen, JT and BUCHAN, GS and BUCHAN, GS and GRIFFIN, JFT and GRIFFIN, JFT and CRAWFORD, AM and CRAWFORD, AM},
title = {{CLONING AND SEQUENCING OF EXPRESSED DRB GENES OF THE RED DEER (CERVUS-ELAPHUS) MHC}},
journal = {Immunogenetics},
year = {1995},
volume = {42},
number = {1},
pages = {1--9}
}
@article{Poznik:2013hw,
author = {Poznik, G D and Poznik, G D and Henn, B M and Henn, B M and Yee, M C and Yee, M C and Sliwerska, E and Sliwerska, E and Euskirchen, G M and Euskirchen, G M and Lin, A A and Lin, A A and Snyder, M and Snyder, M and Quintana-Murci, L and Quintana-Murci, L and Kidd, J M and Kidd, J M and Underhill, P A and Underhill, P A and Bustamante, C D and Bustamante, C D},
title = {{Sequencing Y Chromosomes Resolves Discrepancy in Time to Common Ancestor of Males Versus Females}},
journal = {Science (New York, NY)},
year = {2013},
volume = {341},
number = {6145},
pages = {562--565},
month = aug
}
@article{Cameron:2004dn,
author = {Cameron, E Z},
title = {{Facultative adjustment of mammalian sex ratios in support of the Trivers-Willard hypothesis: evidence for a mechanism}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2004},
volume = {271},
number = {1549},
pages = {1723--1728},
month = aug
}
@article{Clapham:1997tg,
author = {Clapham, PJ and Palsboll, PJ and Palsboll, PJ},
title = {{Molecular analysis of paternity shows promiscuous mating in female humpback whales (Megaptera novaengliae, Borowski)}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1378},
pages = {95--98}
}
@article{Bionaz:2012hc,
author = {Bionaz, M and Periasamy, K and Rodriguez-Zas, SL},
title = {{Old and New Stories: Revelations from Functional Analysis of the Bovine Mammary Transcriptome during the Lactation Cycle}},
journal = {PLOS ONE},
year = {2012}
}
@article{Husby:2011dl,
author = {Husby, Arild and Visser, Marcel E and Kruuk, Loeske E B},
title = {{Speeding Up Microevolution: The Effects of Increasing Temperature on Selection and Genetic Variance in a Wild Bird Population}},
journal = {PLOS Biology},
year = {2011},
volume = {9},
number = {2},
pages = {e1000585},
month = feb
}
@article{Aktipis:2004ds,
author = {Aktipis, C Athena},
title = {{Know when to walk away: contingent movement and the evolution of cooperation}},
journal = {Journal of Theoretical Biology},
year = {2004},
volume = {231},
number = {2},
pages = {249--260},
month = nov
}
@article{Hugenholtz:1998us,
author = {Hugenholtz, P and Goebel, BM and Pace, NR},
title = {{Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity}},
journal = {Journal of Bacteriology},
year = {1998},
volume = {180},
number = {18},
pages = {4765--4774}
}
@article{Cant:1999wa,
author = {Cant, MA and Johnstone, RA},
title = {{Costly young and reproductive skew in animal societies}},
journal = {Behavioral Ecology},
year = {1999},
volume = {10},
number = {2},
pages = {178--184}
}
@article{States:2009jl,
author = {States, Sarah L and Hochachka, Wesley M and Dhondt, andre A},
title = {{Spatial Variation in an Avian Host Community: Implications for Disease Dynamics}},
journal = {EcoHealth},
year = {2010},
volume = {6},
number = {4},
pages = {540--545},
month = feb
}
@article{Lenormand:2009jc,
author = {Lenormand, Thomas and Roze, Denis and Rousset, Francois},
title = {{Stochasticity in evolution}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {3},
pages = {157--165},
month = mar
}
@article{Corl:2010ek,
author = {Corl, A and Davis, A R and Kuchta, S R and Sinervo, B},
title = {{Selective loss of polymorphic mating types is associated with rapid phenotypic evolution during morphic speciation}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {9},
pages = {4254--4259},
month = mar
}
@article{Hornshoj:2009hj,
author = {Hornshoj, Henrik and Bendixen, Emoke and Conley, Lene N and andersen, Pernille K and Hedegaard, Jakob and Panitz, Frank and Bendixen, Christian},
title = {{Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {30}
}
@article{May:2011iy,
author = {May, Dalit and May, Dalit and Blow, Matthew J and Blow, Matthew J and Kaplan, Tommy and Kaplan, Tommy and McCulley, David J and McCulley, David J and Jensen, Brian C and Jensen, Brian C and Akiyama, Jennifer A and Akiyama, Jennifer A and Holt, Amy and Holt, Amy and Plajzer-Frick, Ingrid and Plajzer-Frick, Ingrid and Shoukry, Malak and Shoukry, Malak and Wright, Crystal and Wright, Crystal and Afzal, Veena and Afzal, Veena and Simpson, Paul C and Simpson, Paul C and Rubin, Edward M and Rubin, Edward M and Black, Brian L and Black, Brian L and Bristow, James and Bristow, James and Pennacchio, Len A and Pennacchio, Len A and Visel, Axel and Visel, Axel},
title = {{Large-scale discovery of enhancers from human heart tissue}},
journal = {Nature Genetics},
year = {2011},
volume = {44},
number = {1},
pages = {89--93},
month = dec
}
@article{Zook:2012hs,
author = {Zook, Justin M and Samarov, Daniel and McDaniel, Jennifer and Sen, Shurjo K and Salit, Marc},
title = {{Synthetic Spike-in Standards Improve Run-Specific Systematic Error Analysis for DNA and RNA Sequencing}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e41356},
month = jul
}
@article{Nicolas:2009vn,
author = {Nicolas, Violaine and Granjon, Laurent and Duplantier, Jean-Marc and Cruaud, Corinne and Dobigny, Gauthier},
title = {{Phylogeography of spiny mice (genus Acomys, Rodentia: Muridae) from the south-western margin of the Sahara with taxonomic implications}},
journal = {Biological Journal of The Linnean Society},
year = {2009},
volume = {98},
number = {1},
pages = {29--46}
}
@article{Caballero:2013kx,
author = {Caballero, Armando and Garc{\'\i}a-Dorado, Aurora},
title = {{Allelic Diversity and Its Implications for the Rate of Adaptation.}},
journal = {Genetics},
year = {2013},
volume = {195},
number = {4},
pages = {1373--1384},
month = oct
}
@article{Hultqvist:2012kx,
author = {Hultqvist, Greta and Ocampo Daza, Daniel and Larhammar, Dan and Kilimann, Manfred W},
title = {{Evolution of the Vertebrate Paralemmin Gene Family: Ancient Origin of Gene Duplicates Suggests Distinct Functions}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e41850},
month = jul
}
@article{Wang:2010fo,
author = {Wang, Jinliang},
title = {{Do marker-based paternity assignments favour heterozygous and unrelated males?}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {9},
pages = {1898--1913},
month = may
}
@article{WadaKatsumata:2013fx,
author = {Wada-Katsumata, A and Silverman, J and Schal, C},
title = {{Changes in Taste Neurons Support the Emergence of an Adaptive Behavior in Cockroaches}},
journal = {Science (New York, NY)},
year = {2013},
volume = {340},
number = {6135},
pages = {972--975},
month = may
}
@article{Thomas:2002il,
author = {Thomas, F and Schmidt-Rhaesa, A and Schmidt-Rhaesa, A and Martin, G and Martin, G and Manu, C and Manu, C and Durand, P and Durand, P and Renaud, F and Renaud, F},
title = {{Do hairworms (Nematomorpha) manipulate the water seeking behaviour of their terrestrial hosts?}},
journal = {Journal of Evolutionary Biology},
year = {2002},
volume = {15},
number = {3},
pages = {356--361},
month = apr
}
@article{Davis:2002kj,
author = {Davis, Ellen S},
title = {{Female choice and the benefits of mate guarding by male mallards}},
journal = {Animal Behaviour},
year = {2002},
volume = {64},
number = {4},
pages = {619--628},
month = oct
}
@article{Martin:2010ht,
author = {Martin, E R and Kinnamon, D D and Schmidt, M A and Powell, E H and Zuchner, S and Morris, R W},
title = {{SeqEM: an adaptive genotype-calling approach for next-generation sequencing studies}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {22},
pages = {2803--2810},
month = nov
}
@article{Carvalho:2009cf,
author = {Carvalho, B S and Louis, T A and Irizarry, R A},
title = {{Quantifying uncertainty in genotype calls}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {2},
pages = {242--249},
month = jan
}
@article{Schubert:2009dh,
author = {Schubert, Kristin A and de Vries, Gonda and Vaanholt, Lobke M and Meijer, Harro A J and Daan, Serge and Verhulst, Simon},
title = {{Maternal Energy Allocation to offspring Increases with Environmental Quality in House Mice}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {6},
pages = {831--840},
month = jun
}
@article{Jones:2014fn,
author = {Jones, P and Binns, D and Chang, H Y and Fraser, M and Li, W and McAnulla, C and McWilliam, H and Maslen, J and Mitchell, A and Nuka, G and Pesseat, S and Quinn, A F and Sangrador-Vegas, A and Scheremetjew, M and Yong, S Y and Lopez, R and Hunter, S},
title = {{InterProScan 5: genome-scale protein function classification}},
journal = {Bioinformatics (Oxford, England)},
year = {2014},
volume = {30},
number = {9},
pages = {1236--1240},
month = apr
}
@article{Sims:2014gk,
author = {Sims, D and Ilott, N E and Sansom, S N and Sudbery, I M and Johnson, J S and Fawcett, K A and Berlanga-Taylor, A J and Luna-Valero, S and Ponting, C P and Heger, A},
title = {{CGAT: computational genomics analysis toolkit}},
journal = {Bioinformatics (Oxford, England)},
year = {2014},
volume = {30},
number = {9},
pages = {1290--1291},
month = apr
}
@article{Holmes:2012kq,
author = {Holmes, Ross P},
title = {{The role of renal water channels in health and disease.}},
journal = {Molecular aspects of medicine},
year = {2012},
month = jan
}
@article{Vanpe:2009jn,
author = {Vanpe, C. and Vanpe, C. and Kjellander, P. and Kjellander, P. and Gaillard, J. M. and Gaillard, J. M. and Cosson, J F and Cosson, J F and Galan, M and Galan, M and Hewison, A. J. M. and Hewison, A. J. M.},
title = {{Multiple paternity occurs with low frequency in the territorial roe deer, Capreolus capreolus}},
journal = {Biological Journal of The Linnean Society},
year = {2009},
volume = {97},
number = {1},
pages = {128--139}
}
@article{Ivy:2005dv,
author = {Ivy, T M and Weddle, C B and Sakaluk, S K},
title = {{Females use self-referent cues to avoid mating with previous mates}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2005},
volume = {272},
number = {1580},
pages = {2475--2478},
month = dec
}
@article{DuVal:2013kd,
author = {DuVal, E H and DuVal, E H},
title = {{Female Mate Fidelity in a Lek Mating System and Its Implications for the Evolution of Cooperative Lekking Behavior}},
journal = {The American Naturalist},
year = {2013},
volume = {181},
number = {2},
pages = {213--222},
month = feb
}
@article{Miller:2008jx,
author = {Miller, Jason R and Delcher, Arthur L and Koren, Sergey and Venter, Eli and Walenz, Brian P and Brownley, Anushka and Johnson, Justin and Li, Kelvin and Mobarry, Clark and Sutton, Granger},
title = {{Aggressive assembly of pyrosequencing reads with mates.}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {24},
pages = {2818--2824}
}
@article{GarciaGonzalez:2011jh,
author = {Garcia-Gonzalez, Francisco and Evans, Jonathan P},
title = {{FERTILIZATION SUCCESS AND THE ESTIMATION OF GENETIC VARIANCE IN SPERM COMPETITIVENESS}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {3},
pages = {746--756},
month = sep
}
@article{Ji:2011it,
author = {Ji, Yan and Ji, Yan and Shi, Yixiang and Shi, Yixiang and Ding, Guohui and Ding, Guohui and Li, Yixue and Li, Yixue},
title = {{A new strategy for better genome assembly from very short reads}},
journal = {BMC Bioinformatics},
year = {2011},
volume = {12},
number = {1},
pages = {493},
month = dec
}
@article{Cheuvront:2010eg,
author = {Cheuvront, S N and Kenefick, R W and Montain, S J and Sawka, M N},
title = {{Mechanisms of aerobic performance impairment with heat stress and dehydration.}},
journal = {Journal of Applied Physiology},
year = {2010},
volume = {109},
number = {6},
pages = {1989--1995},
month = dec
}
@article{Constant:2012fr,
author = {Constant, N and Constant, N and Santorelli, L A and Santorelli, L A and Lopes, J F S and Lopes, J F S and Hughes, W O H},
title = {{The effects of genotype, caste, and age on foraging performance in leaf-cutting ants}},
journal = {Behavioral Ecology},
year = {2012},
month = sep
}
@article{Soukup:1997vm,
author = {Soukup, SS and Thompson, CF},
title = {{Social mating system affects the frequency of extra-pair paternity in house wrens}},
journal = {Animal Behaviour},
year = {1997},
volume = {54},
pages = {1089--1105}
}
@article{Arnqvist:1999tw,
author = {Arnqvist, G and Danielsson, I},
title = {{Postmating sexual selection: the effects of male body size and recovery period on paternity and egg production rate in a water strider}},
journal = {Behavioral Ecology},
year = {1999},
volume = {10},
number = {4},
pages = {358--365}
}
@article{Bradnam:2013uua,
author = {Bradnam, Keith R and Fass, Joseph N and Alexandrov, Anton and Baranay, Paul and Bechner, Michael and Boisvert10, S{\'e}bastien and Boisvert10, S{\'e}bastien and Chapman, Jarrod A and Chapuis, Guillaume and Chikhi, Rayan and Chitsaz, Hamidreza and Chou, Wen-Chi and Corbeil, Jacques and Del Fabbro, Cristian and Docking, T Roderick and Durbin, Richard and Earl, Dent and Emrich, Scott and Fedotov, Pavel and Fonseca, Nuno A and Ganapathy, Ganeshkumar and Gibbs, Richard A and Gnerre, Sante and Godzaridis, El{\'e}nie and Goldstein, Steve and Haimel, Matthias and Hall, Giles and Haussler, David and Hiatt, Joseph B and Ho, Isaac Y and Howard, Jason and Hunt, Martin and Jackman, Shaun D and Jaffe, David B and Jarvis, Erich and Jiang, Huaiyang and Kazakov, Sergey and Kersey, Paul J and Kitzman, Jacob O and Knight, James R and Koren, Sergey and Lam, Tak-Wah and Lavenier, Dominique and Laviolette, Fran{\c c}ois and Li, Yingrui and Li, Zhenyu and Liu, Binghang and Liu, Yue and Luo, Ruibang and Maccallum, Iain and \textbf{MacManes}, Matthew D and Maillet, Nicolas and Melnikov, Sergey and Vieira, Bruno Miguel and Vieira, Bruno Miguel and Naquin, Delphine and Ning, Zemin and Otto, Thomas D and Paten, Benedict and Paulo, Oct{\'a}vio S and Phillippy, Adam M and Pina-Martins, Francisco and Place, Michael and Przybylski, Dariusz and Qin, Xiang and Qu, Carson and Ribeiro, Filipe J and Richards, Stephen and Rokhsar, Daniel S and Ruby, J Graham and Scalabrin, Simone and Schatz, Michael C and Schwartz, David C and Sergushichev, Alexey and Sharpe, Ted and Shaw, Timothy I and Shendure, Jay and Shi, Yujian and Simpson, Jared T and Song, Henry and Tsarev, Fedor and Vezzi, Francesco and Vicedomini, Riccardo and Wang, Jun and Worley, Kim C and Yin, Shuangye and Yiu, Siu-Ming and Yuan, Jianying and Zhang, Guojie and Zhang, Hao and Zhou, Shiguo and Korf, Ian F},
title = {{Assemblathon 2: evaluating \textit{de novo} methods of genome assembly in three vertebrate species}},
journal = {arXiv.org},
year = {2013},
eprint = {1301.5406v1},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = jan
}
@article{Mbassa:1988vx,
author = {Mbassa, G K and Mbassa, G K},
title = {{Mammalian renal modifications in dry environments.}},
journal = {Veterinary research communications},
year = {1988},
volume = {12},
number = {1},
pages = {1--18}
}
@article{Pemberton:1995td,
author = {Pemberton, JM and Slate, J and BANCROFT, DR and BARRETT, JA},
title = {{Nonamplifying Alleles at Microsatellite Loci - a Caution for Parentage and Population Studies}},
journal = {Molecular Ecology},
year = {1995},
volume = {4},
number = {2},
pages = {249--252}
}
@article{Wang:2009be,
author = {Wang, Huai-Chun and Susko, Edward and Roger, andrew J},
title = {{PROCOV: maximum likelihood estimation of protein phylogeny under covarion models and site-specific covarion pattern analysis}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {225}
}
@article{Plunkett:2011kl,
author = {Plunkett, Jevon and Plunkett, Jevon and Doniger, Scott and Doniger, Scott and Orabona, Guilherme and Orabona, Guilherme and Morgan, Thomas and Morgan, Thomas and Haataja, Ritva and Haataja, Ritva and Hallman, Mikko and Hallman, Mikko and Puttonen, Hilkka and Puttonen, Hilkka and Menon, Ramkumar and Menon, Ramkumar and Kuczynski, Edward and Kuczynski, Edward and Norwitz, Errol and Norwitz, Errol and Snegovskikh, Victoria and Snegovskikh, Victoria and Palotie, Aarno and Peltonen, Leena and Fellman, Vineta and Fellman, Vineta and DeFranco, Emily A and DeFranco, Emily A and Chaudhari, Bimal P and Chaudhari, Bimal P and McGregor, Tracy L and McGregor, Tracy L and McElroy, Jude J and McElroy, Jude J and Oetjens, Matthew T and Oetjens, Matthew T and Teramo, Kari and Teramo, Kari and Borecki, Ingrid and Borecki, Ingrid and Fay, Justin and Fay, Justin and Muglia, Louis and Muglia, Louis},
title = {{An evolutionary genomic approach to identify genes involved in human birth timing.}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {4},
pages = {e1001365},
month = apr
}
@article{Hoogland:2013dl,
author = {Hoogland, J L},
title = {{Prairie Dogs Disperse When All Close Kin Have Disappeared}},
journal = {Science (New York, NY)},
year = {2013},
volume = {339},
number = {6124},
pages = {1205--1207},
month = mar
}
@article{CluttonBrock:2002ty,
author = {Clutton-Brock, TH},
title = {{Behavioral ecology - Breeding together: Kin selection and mutualism in cooperative vertebrates}},
journal = {Science (New York, NY)},
year = {2002},
volume = {296},
number = {5565},
pages = {69--72}
}
@article{Bazykin:2012hy,
author = {Bazykin, G A and Bazykin, G A and Kondrashov, A S and Kondrashov, A S},
title = {{Major role of positive selection in the evolution of conservative segments of \textit{Drosophila} proteins}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1742},
pages = {3409--3417},
month = jul
}
@article{Ivanova:2013id,
author = {Ivanova, Natalia V and Kuzmina, Masha L},
title = {{Protocols for dry DNA storage and shipment at room temperature}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = jun
}
@article{Gautier:2009kk,
author = {Gautier, Mathieu and Flori, Laurence and Riebler, andrea and Jaffr{\'e}zic, Florence and Lalo{\'e}, Denis and Gut, Ivo and Moazami-Goudarzi, Katayoun and Foulley, Jean-Louis},
title = {{A whole genome Bayesian scan for adaptive genetic divergence in West African cattle}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {550}
}
@article{Barbosa:2006bx,
journal = {Journal of Fish Biology},
volume = {68},
number = {6}
}
@article{Shalem:2014dg,
author = {Shalem, O and Sanjana, N E and Hartenian, E and Shi, X and Scott, D A and Mikkelsen, T S and Heckl, D and Ebert, B L and Root, D E and Doench, J G and Zhang, F},
title = {{Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells}},
journal = {Science (New York, NY)},
year = {2014},
volume = {343},
number = {6166},
pages = {84--87},
month = jan
}
@article{Rudnicki:2007cx,
author = {Rudnicki, M and Eder, S and Perco, P and Enrich, J and Scheiber, K and Koppelst{\"a}tter, C and Schratzberger, G and Mayer, B and Oberbauer, R and Meyer, T W and Mayer, G},
title = {{Gene expression profiles of human proximal tubular epithelial cells in proteinuric nephropathies}},
journal = {Kidney international},
year = {2006},
volume = {71},
number = {4},
pages = {325--335},
month = dec
}
@article{Siepel:2009is,
author = {Siepel, Adam},
title = {{Phylogenomics of primates and their ancestral populations.}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {11},
pages = {1929--1941},
month = nov
}
@article{Vohs:2008kj,
author = {Vohs, Kathleen D and Schooler, Jonathan W},
title = {{The Value of Believing in Free Will: Encouraging a Belief in Determinism Increases Cheating}},
journal = {Psychological Science},
year = {2008},
volume = {19},
number = {1},
pages = {49--54},
month = jan
}
@article{Srivastava:2012jg,
author = {Srivastava, A and Winker, K and Winker, K and Shaw, T I and Jones, K L and Jones, K L and Glenn, T C},
title = {{Transcriptome Analysis of a North American Songbird, \textit{Melospiza} \textit{melodia}}},
journal = {DNA Research},
year = {2012},
volume = {19},
number = {4},
pages = {325--333},
month = aug
}
@article{He:2012fe,
author = {He, Weiyi and You, Minsheng and You, Minsheng and Vasseur, Liette and Vasseur, Liette and Yang, Guang and Yang, Guang and Xie, Miao and Xie, Miao and Cui, Kai and Cui, Kai and Bai, Jianlin and Bai, Jianlin and Liu, Chunhui and Liu, Chunhui and Li, Xiaojing and Li, Xiaojing and Xu, Xiufeng and Xu, Xiufeng and Huang, Shiguo and Huang, Shiguo},
title = {{Developmental and insecticide-resistant insights from the \textit{de novo} assembled transcriptome of the diamondback moth, \textit{Plutella} \textit{xylostella}}},
journal = {Genomics},
year = {2012},
volume = {99},
number = {3},
pages = {169--177},
month = mar
}
@article{Craig:2009bo,
author = {Craig, D W and Millis, M P and DiStefano, J K},
title = {{Genome-wide SNP genotyping study using pooled DNA to identify candidate markers mediating susceptibility to end-stage renal disease attributed to Type 1 diabetes}},
journal = {Diabetic Medicine},
year = {2009},
volume = {26},
number = {11},
pages = {1090--1098},
month = nov
}
@article{DelbarcoTrillo:2006hia,
author = {Delbarco-Trillo, J},
title = {{Male meadow voles respond differently to risk and intensity of sperm competition}},
journal = {Behavioral Ecology},
year = {2006},
volume = {17},
number = {4},
pages = {581--585},
month = apr
}
@article{Anonymous:oDdaBOiH,
title = {{Decapod crustacean phylogenetics}},
year = {2009},
pages = {1--22},
month = sep
}
@article{Ronkainen:2010fq,
author = {Ronkainen, Katri and Kaitala, Arja and Kivel{\"a}, Sami M},
title = {{Polyandry, multiple mating, and female fitness in a water strider Aquarius paludum}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {64},
number = {4},
pages = {657--664},
month = nov
}
@article{Rossiter:2005hu,
author = {Rossiter, Stephen J and Ransome, Roger D and Faulkes, Christopher G and Le Comber, Steven C and Jones, Gareth},
title = {{Mate fidelity and intra-lineage polygyny in greater horseshoe bats}},
journal = {Nature},
year = {2005},
volume = {437},
number = {7057},
pages = {408--411},
month = sep
}
@article{Stoletzki:2008ho,
author = {Stoletzki, Nina},
title = {{Conflicting selection pressures on synonymous codon use in yeast suggest selection on mRNA secondary structures}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {224}
}
@article{Ngandu:2008br,
author = {Ngandu, Nobubelo K and Scheffler, Konrad and Moore, Penny and Woodman, Zenda and Martin, Darren and Seoighe, Cathal},
title = {{Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences}},
journal = {Virology Journal},
year = {2008},
volume = {5},
number = {1},
pages = {160}
}
@article{TheMHCsequencingconsortrium:1999jf,
author = {{The MHC sequencing consortrium} and {The MHC sequencing consortrium}},
title = {{Complete sequence and gene map of a human major histocompatibility complex. The MHC sequencing consortium.}},
journal = {Nature},
year = {1999},
volume = {401},
number = {6756},
pages = {921--923},
month = oct
}
@article{Meddle:2003fd,
author = {Meddle, S L and Meddle, S L and Owen-Ashley, N T and Owen-Ashley, N T and Richardson, M I and Richardson, M I and Wingfield, J C and Wingfield, J C},
title = {{Modulation of the hypothalamic-pituitary-adrenal axis of an Arctic-breeding polygynandrous songbird, the Smith's longspur, Calcarius pictus}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2003},
volume = {270},
number = {1526},
pages = {1849--1856},
month = sep
}
@article{Brandley:2006ir,
author = {Brandley, Matthew and Leache, Adam and Warren, Dan and McGuire, Jimmy},
title = {{Are Unequal Clade Priors Problematic for Bayesian Phylogenetics?}},
journal = {Systematic Biology},
year = {2006},
volume = {55},
number = {1},
pages = {138--146},
month = feb
}
@article{Go:2005be,
author = {Go, Yasuhiro and Go, Yasuhiro and Rakotoarisoa, Gilbert and Rakotoarisoa, Gilbert and Kawamoto, Yoshi and Kawamoto, Yoshi and Shima, Taizo and Shima, Taizo and Koyama, Naoki and Koyama, Naoki and Randrianjafy, Albert and Randrianjafy, Albert and Mora, Roger and Mora, Roger and Hirai, Hirohisa and Hirai, Hirohisa},
title = {{Characterization and evolution of major histocompatibility complex class II genes in the aye-aye, Daubentonia madagascariensis.}},
journal = {Primates; journal of primatology},
year = {2005},
volume = {46},
number = {2},
pages = {135--139},
month = apr
}
@article{Yang:2008il,
author = {Yang, Jie and Wang, Zhen Long and Zhao, Xin Quan and Wang, De Peng and Qi, De Lin and Xu, Bao Hong and Ren, Yong Hong and Tian, Hui Fang},
title = {{Natural Selection and Adaptive Evolution of Leptin in the Ochotona Family Driven by the Cold Environmental Stress}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {1},
pages = {e1472},
month = jan
}
@article{Yi:2010dp,
author = {Yi, X and Liang, Y and Huerta-Sanchez, E and Jin, X and Cuo, Z X P and Pool, J E and Xu, X and Jiang, H and Vinckenbosch, N and Korneliussen, T S and Zheng, H and Liu, T and He, W and Li, K and Luo, R and Nie, X and Wu, H and Zhao, M and Cao, H and Zou, J and Shan, Y and Li, S and Yang, Q and Asan and Ni, P and Tian, G and Xu, J and Liu, X and Jiang, T and Wu, R and Zhou, G and Tang, M and Qin, J and Wang, T and Feng, S and Li, G and Huasang and Luosang, J and Wang, W and Chen, F and Wang, Y and Zheng, X and Li, Z and Bianba, Z and Yang, G and Wang, X and Tang, S and Gao, G and Chen, Y and Luo, Z and Gusang, L and Cao, Z and Zhang, Q and Ouyang, W and Ren, X and Liang, H and Zheng, H and Huang, Y and Li, J and Bolund, L and Kristiansen, K and Li, Y and Zhang, Y and Zhang, X and Li, R and Li, S and Yang, H and Nielsen, R and Wang, J and Wang, J},
title = {{Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude}},
journal = {Science (New York, NY)},
year = {2010},
volume = {329},
number = {5987},
pages = {75--78},
month = jul
}
@article{Galtier:2009kb,
author = {Galtier, N and Nabholz, B and Glemin, S and Hurst, G D D},
title = {{Mitochondrial DNA as a marker of molecular diversity: a reappraisal}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {22},
pages = {4541--4550},
month = nov
}
@article{Ramm:2007vq,
author = {Ramm, Steven A},
title = {{Sexual selection and genital evolution in mammals: A phylogenetic analysis of baculum length}},
journal = {The American Naturalist},
year = {2007},
volume = {169},
number = {3},
pages = {360--369}
}
@article{Flaxman:2000tp,
author = {Flaxman, SM and Sherman, PW},
title = {{Morning sickness: A mechanism for protecting mother and embryo}},
journal = {Quarterly Review of Biology},
year = {2000},
volume = {75},
number = {2},
pages = {113--148}
}
@article{Theobald:2010cm,
author = {Theobald, Douglas L},
title = {{A formal test of the theory of universal common ancestry}},
journal = {Nature},
year = {2010},
volume = {465},
number = {7295},
pages = {219--222},
month = may
}
@article{Sun:2012gg,
author = {Sun, Lina and Cui, Li and Rui, Changhui and Yan, Xiaojing and Yang, Daibin and Yuan, Huizhu},
title = {{Modulation of the expression of ryanodine receptor mRNA from \textit{Plutella} \textit{xylostella} as a result of diamide insecticide application.}},
journal = {Gene},
year = {2012},
volume = {511},
number = {2},
pages = {265--273},
month = dec
}
@article{Chybicki:2008hb,
author = {Chybicki, I J and Burczyk, J},
title = {{Simultaneous Estimation of Null Alleles and Inbreeding Coefficients}},
journal = {Journal of Heredity},
year = {2008},
volume = {100},
number = {1},
pages = {106--113},
month = may
}
@article{Anonymous:2009gk,
title = {{Information overload}},
journal = {Nature},
year = {2009},
volume = {460},
number = {7255},
pages = {551--551},
month = jul
}
@article{Johnson:1999uz,
author = {Johnson, DDP and Briskie, JV},
title = {{Sperm competition and sperm length in shorebirds}},
journal = {The Condor},
year = {1999},
volume = {101},
number = {4},
pages = {848--854}
}
@article{Robinson:2008gq,
author = {Robinson, G E and Fernald, R D and Clayton, D F},
title = {{Genes and Social Behavior}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5903},
pages = {896--900},
month = nov
}
@article{Caesar:2008fa,
author = {Caesar, S and Forsman, A},
title = {{Do polyandrous pygmy grasshopper females obtain fitness benefits for their offspring?}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {2},
pages = {354--361},
month = mar
}
@article{Rosenkranz:2008fg,
author = {Rosenkranz, Ruben and Borodina, Tatiana and Lehrach, Hans and Himmelbauer, Heinz},
title = {{Characterizing the mouse ES cell transcriptome with Illumina sequencing}},
journal = {Genomics},
year = {2008},
volume = {92},
number = {4},
pages = {187--194},
month = oct
}
@article{Baker:2004du,
author = {Baker, P J},
title = {{Polygynandry in a red fox population: implications for the evolution of group living in canids?}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {5},
pages = {766--778},
month = jun
}
@article{Kojima:2009tq,
author = {Kojima, S and Moku, M and Moku, M and Kawaguchi, K and Kawaguchi, K},
title = {{Genetic diversity and population structure of three dominant myctophid fishes (Diaphus theta, Stenobrachius leucopsarus, and S. nannochir) in the North Pacific Ocean}},
journal = {Journal of Oceanography},
year = {2009},
volume = {65},
number = {2},
pages = {187--193}
}
@article{Heo:2011bl,
author = {Heo, J B and Sung, S},
title = {{Vernalization-Mediated Epigenetic Silencing by a Long Intronic Noncoding RNA}},
journal = {Science (New York, NY)},
year = {2011},
volume = {331},
number = {6013},
pages = {76--79},
month = jan
}
@article{Mangan:2012fb,
author = {Mangan, M and Webb, B},
title = {{Spontaneous formation of multiple routes in individual desert ants (Cataglyphis velox)}},
journal = {Behavioral Ecology},
year = {2012},
volume = {23},
number = {5},
pages = {944--954},
month = aug
}
@article{Webster:2005vu,
author = {Webster, MS and Reichart, L},
title = {{Use of microsatellites for parentage and kinship analyses in animals}},
journal = {Molecular Evolution: Producing The Biochemical Data, Part B},
year = {2005},
volume = {395},
pages = {222--238}
}
@article{Milosavljevic:2011ih,
author = {Milosavljevic, Aleksandar},
title = {{Emerging patterns of epigenomic variation.}},
journal = {Trends In Genetics},
year = {2011},
month = apr
}
@article{Schneeberger:2009dg,
author = {Schneeberger, Korbinian and Ossowski, Stephan and Lanz, Christa and Juul, Trine and Petersen, Annabeth H{\o}gh and Nielsen, K{\aa}re Lehmann and J{\o}rgensen, Jan-Elo and Weigel, Detlef and andersen, Stig Uggerh{\o}},
title = {{SHOREmap: simultaneous mapping and mutation identification by deep sequencing}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {8},
pages = {550--551},
month = aug
}
@article{Simon:tw,
author = {Simon, SA and Zhai, J and Nandety, RS and Nandety, RS and McCormick, KP and McCormick, KP and Zeng, J and Zeng, J and Mejia, D and Mejia, D and Meyers, BC and Meyers, BC},
title = {{Short-Read Sequencing Technologies for Transcriptional Analyses}},
journal = {Annual Review of Plant Biology},
volume = {60},
number = {1}
}
@article{Antunes:2008cx,
author = {Antunes, Agostinho and Troyer, Jennifer L and Roelke, Melody E and Pecon-Slattery, Jill and Packer, Craig and Winterbach, Christiaan and Winterbach, Hanlie and Hemson, Graham and Frank, Laurence and Stander, Philip and Siefert, Ludwig and Driciru, Margaret and Funston, Paul J and Alexander, Kathy A and Prager, Katherine C and Mills, Gus and Wildt, David and Bush, Mitch and O'brien, Stephen J and Johnson, Warren E},
title = {{The Evolutionary Dynamics of the Lion Panthera leo Revealed by Host and Viral Population Genomics}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {11},
pages = {e1000251},
month = nov
}
@article{Bullard:2010go,
author = {Bullard, James H. and Bullard, James H. and Purdom, Elizabeth and Purdom, Elizabeth and Hansen, Kasper D. and Hansen, Kasper D. and Dudoit, Sandrine and Dudoit, Sandrine},
title = {{Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11}
}
@article{Anonymous:Ku-goJFt,
title = {{f_2316-EBO-EvoPipes.net-Bioinformatic-Tools-for-Ecological-and-Evolutionary-Geno.pdf_3157}},
year = {2010},
pages = {1--7},
month = oct
}
@article{Dragoo:2006dh,
author = {Dragoo, J W},
title = {{Phylogeography of the deer mouse (\textit{Peromyscus} \textit{maniculatus}) provides a predictive framework for research on hantaviruses}},
journal = {Journal of General Virology},
year = {2006},
volume = {87},
number = {7},
pages = {1997--2003},
month = jul
}
@article{Zhang:2006da,
author = {Zhang, Zhang and Zhang, Zhang and Li, Jun and Zhao, Xiao-Qian and Zhao, Xiao-Qian and Wang, Jun and Wong, Gane Ka-Shu and Wong, Gane Ka-Shu and Yu, Jun and Yu, Jun},
title = {{KaKs_Calculator: calculating Ka and Ks through model selection and model averaging.}},
journal = {Genomics, proteomics {\&} bioinformatics},
year = {2006},
volume = {4},
number = {4},
pages = {259--263},
month = nov
}
@article{Hedrick:2013ko,
author = {Hedrick, Philip W and Hedrick, Philip W},
title = {{Adaptive introgression in animals: examples and comparison to new mutation and standing variation as sources of adaptive variation}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = aug
}
@article{Webster:2001ta,
author = {Webster, MS and Chuang-Dobbs, HC and Holmes, RT},
title = {{Microsatellite identification of extrapair sires in a socially monogamous warbler}},
journal = {Behavioral Ecology},
year = {2001},
volume = {12},
number = {4},
pages = {439--446}
}
@article{DiezRoux:2011dm,
author = {Diez-Roux, Graciana and Diez-Roux, Graciana and Banfi, Sandro and Banfi, Sandro and Sultan, Marc and Geffers, Lars and Geffers, Lars and Anand, Santosh and Anand, Santosh and Rozado, David and Rozado, David and Magen, Alon and Canidio, Elena and Canidio, Elena and Pagani, Massimiliano and Pagani, Massimiliano and Peluso, Ivana and Peluso, Ivana and Lin-Marq, Nathalie and Lin-Marq, Nathalie and Koch, Muriel and Koch, Muriel and Bilio, Marchesa and Bilio, Marchesa and Cantiello, Immacolata and Cantiello, Immacolata and Verde, Roberta and Verde, Roberta and De Masi, Cristian and De Masi, Cristian and Bianchi, Salvatore A. and Bianchi, Salvatore A. and Cicchini, Juliette and Cicchini, Juliette and Perroud, Elodie and Perroud, Elodie and Mehmeti, Shprese and Mehmeti, Shprese and Dagand, Emilie and Dagand, Emilie and Schrinner, Sabine and Schrinner, Sabine and Nuernberger, Asja and Nuernberger, Asja and Schmidt, Katja and Schmidt, Katja and Metz, Katja and Metz, Katja and Zwingmann, Christina and Zwingmann, Christina and Brieske, Norbert and Brieske, Norbert and Springer, Cindy and Springer, Cindy and Hernandez, Ana Martinez and Hernandez, Ana Martinez and Herzog, Sarah and Herzog, Sarah and Grabbe, Frauke and Grabbe, Frauke and Sieverding, Cornelia and Sieverding, Cornelia and Fischer, Barbara and Fischer, Barbara and Schrader, Kathrin and Schrader, Kathrin and Brockmeyer, Maren and Brockmeyer, Maren and Dettmer, Sarah and Dettmer, Sarah and Helbig, Christin and Helbig, Christin and Alunni, Violaine and Alunni, Violaine and Battaini, Marie-Annick and Battaini, Marie-Annick and Mura, Carole and Mura, Carole and Henrichsen, Charlotte N and Garcia-Lopez, Raquel and Garcia-Lopez, Raquel and Echevarria, Diego and Echevarria, Diego and Puelles, Eduardo and Puelles, Eduardo and Garcia-Calero, Elena and Garcia-Calero, Elena and Kruse, Stefan and Kruse, Stefan and Uhr, Markus and Uhr, Markus and Kauck, Christine and Kauck, Christine and Feng, Guangjie and Feng, Guangjie and Milyaev, Nestor and Milyaev, Nestor and Ong, Chuang Kee and Ong, Chuang Kee and Kumar, Lalit and Kumar, Lalit and Lam, MeiSze and Lam, MeiSze and Semple, Colin A. and Semple, Colin A. and Gyenesei, Attila and Gyenesei, Attila and Mundlos, Stefan and Mundlos, Stefan and Radelof, Uwe and Radelof, Uwe and Lehrach, Hans and Sarmientos, Paolo and Sarmientos, Paolo and Reymond, Alexandre and Davidson, Duncan R. and Davidson, Duncan R. and Dolle, Pascal and Dolle, Pascal and Antonarakis, Stylianos E and Yaspo, Marie-Laure and Martinez, Salvador and Martinez, Salvador and Baldock, Richard A. and Baldock, Richard A. and Eichele, Gregor and Eichele, Gregor and Ballabio, andrea and Ballabio, andrea},
title = {{A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo}},
journal = {PLOS Biology},
year = {2011},
volume = {9},
number = {1}
}
@article{Ayala:1970uh,
author = {Ayala, F J},
title = {{Adaptation by Natural Selection in Populations of \textit{Drosophila} \textit{pseudoobscura}}},
journal = {Experientia},
year = {1970},
volume = {26},
pages = {208--{\&}},
month = mar
}
@article{Fleischman:2004gy,
author = {Fleischman, R R},
title = {{No direct or indirect benefits to cryptic female choice in house crickets (Acheta domesticus)}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {5},
pages = {793--798},
month = jun
}
@article{YomTov:2006wk,
author = {Yom-Tov, Yoram and Geffen, Eli},
title = {{Geographic variation in body size: the effects of ambient temperature and precipitation}},
journal = {Oecologia},
year = {2006},
volume = {148},
number = {2},
pages = {213--218}
}
@article{Lee:2004ut,
author = {Lee, Jin Il and Ahnn, Joohong},
title = {{Calcineurin in animal behavior}},
journal = {Molecules and Cells},
year = {2004},
volume = {17},
number = {3},
pages = {390--396},
month = jun
}
@article{ISHIBASHI:1994ur,
author = {ISHIBASHI, K and ISHIBASHI, K and SASAKI, S and SASAKI, S and FUSHIMI, K and FUSHIMI, K and UCHIDA, S and UCHIDA, S and KUWAHARA, M and KUWAHARA, M and SAITO, H and SAITO, H and FURUKAWA, T and FURUKAWA, T and NAKAJIMA, K and NAKAJIMA, K and YAMAGUCHI, Y and YAMAGUCHI, Y and Gojobori, T and Gojobori, T and MARUMO, F and MARUMO, F},
title = {{Molecular-Cloning and Expression of a Member of the Aquaporin Family with Permeability to Glycerol and Urea in Addition to Water Expressed at the Basolateral Membrane of Kidney Collecting Duct Cells}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {14},
pages = {6269--6273}
}
@article{Griffin:2003tw,
author = {Griffin, AS and Pemberton, JM and Brotherton, PNM and McIlrath, G and Gaynor, D and Kansky, R and O'Riain, J and Clutton-Brock, TH},
title = {{A genetic analysis of breeding success in the cooperative meerkat (Suricata suricatta)}},
journal = {Behavioral Ecology},
year = {2003},
volume = {14},
number = {4},
pages = {472--480}
}
@article{Yu:2011if,
author = {Yu, Li and Yu, Li and Jin, Wei and Jin, Wei and Zhang, Xin and Zhang, Xin and Wang, Ding and Wang, Ding and Zheng, Jin-song and Zheng, Jin-song and Yang, Guang and Xu, Shi-xia and Xu, Shi-xia and Cho, Soochin and Cho, Soochin and Zhang, Ya-Ping},
title = {{Evidence for Positive Selection on the Leptin Gene in Cetacea and Pinnipedia}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {10}
}
@article{Baucom:2009ds,
author = {Baucom, R S and Estill, J C and Leebens-Mack, J and Bennetzen, J L},
title = {{Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome}},
journal = {Genome Research},
year = {2008},
volume = {19},
number = {2},
pages = {243--254},
month = dec
}
@article{Anonymous:2013ko,
title = {{Science 2013 Lajoie}},
year = {2013},
pages = {1--5},
month = oct
}
@article{Guida:2011dm,
author = {Guida, Alessandro and Guida, Alessandro and Lindstaedt, Claudia and Lindstaedt, Claudia and Maguire, Sarah L and Maguire, Sarah L and Ding, Chen and Ding, Chen and Higgins, Desmond G and Corton, Nicola J and Corton, Nicola J and Berriman, Matthew and Butler, Geraldine and Butler, Geraldine},
title = {{Using RNA-seq to determine the transcriptional landscape and the hypoxic response of the pathogenic yeast Candida parapsilosis}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {628}
}
@article{Winter:2011ks,
author = {Winter, Nina and Winter, Nina and Nimzyk, Rolf and Nimzyk, Rolf and Boesche, Carolin and Boesche, Carolin and Meyer, Anke and Meyer, Anke and Bullerdiek, Joern and Bullerdiek, Joern},
title = {{Chromatin Immunoprecipitation to Analyze DNA Binding Sites of HMGA2}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {4}
}
@article{ColombelliNegrel:2008bm,
author = {Colombelli-Negrel, Diane and Kleindorfer, Sonia},
title = {{In superb fairy wrens ( Malurus cyaneus), nuptial males have more blood parasites and higher haemoglobin concentration than eclipsed males}},
journal = {Australian Journal of Zoology},
year = {2008},
volume = {56},
number = {2},
pages = {117}
}
@article{Lacey:1999vz,
author = {Lacey, EA and Maldonaldo, JE and Clabaugh, JP and Matocq, MD},
title = {{Interspecific variation in microsatellites isolated from tuco-tucos (Rodentia : Ctenomyidae)}},
journal = {Molecular Ecology},
year = {1999},
volume = {8},
number = {10},
pages = {1754--1756}
}
@article{Anonymous:2010wf,
title = {{mseq}},
year = {2010},
pages = {1--21},
month = jan
}
@article{Mainguy:2007da,
author = {Mainguy, Julien and Worley, Kirsty and Cote, Steeve D and Coltman, David W},
title = {{Low MHC DRB class II diversity in the mountain goat: past bottlenecks and possible role of pathogens and parasites}},
journal = {Conservation Genetics},
year = {2006},
volume = {8},
number = {4},
pages = {885--891},
month = nov
}
@article{Boneh:1998vz,
author = {Boneh, S and Boneh, S and Boneh, A and Boneh, A and Caron, RJ and Caron, RJ},
title = {{Estimating the prediction function and the number of unseen species in sampling with replacement}},
journal = {Journal of The American Statistical Association},
year = {1998},
volume = {93},
number = {441},
pages = {372--379}
}
@article{Chamary:2006db,
author = {Chamary, J V and Parmley, Joanna L and Hurst, Laurence D},
title = {{Hearing silence: non-neutral evolution at synonymous sites in mammals}},
journal = {Nature Reviews Genetics},
year = {2006},
volume = {7},
number = {2},
pages = {98--108},
month = feb
}
@article{Moller:1989we,
author = {Moller, AP and Birkhead, TR},
title = {{Copulation behaviour in mammals: evidence that sperm competition is widespread}},
journal = {Biological Journal of The Linnean Society},
year = {1989},
volume = {38},
number = {2},
pages = {119--131}
}
@article{Denoel:2010cw,
author = {Deno{\"e}l, Mathieu and Doellen, Joffrey},
title = {{Displaying in the dark: light-dependent alternative mating tactics in the Alpine newt}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {64},
number = {7},
pages = {1171--1177},
month = mar
}
@article{Falush:2003tz,
author = {Falush, D and Wirth, T and Wirth, T and Linz, B and Linz, B and Pritchard, JK and Pritchard, JK and Stephens, M and Stephens, M and Kidd, M and Kidd, M and Blaser, MJ and Blaser, MJ and Graham, DY and Graham, DY and Vacher, S and Vacher, S and Perez-Perez, GI and Perez-Perez, GI and Yamaoka, Y and Yamaoka, Y and Megraud, F and Megraud, F and Otto, K and Otto, K and Reichard, U and Reichard, U and Katzowitsch, E and Katzowitsch, E and Wang, XY and Wang, XY and Achtman, M and Achtman, M and Suerbaum, S and Suerbaum, S},
title = {{Traces of human migrations in \emph{Helicobacter pylori} populations}},
journal = {Science (New York, NY)},
year = {2003},
volume = {299},
number = {5612},
pages = {1582--1585}
}
@article{Chapuis:2007el,
author = {Chapuis, M P and Estoup, A},
title = {{Microsatellite Null Alleles and Estimation of Population Differentiation}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {24},
number = {3},
pages = {621--631},
month = dec
}
@article{Altschul:2013is,
author = {Altschul, Stephen and Demchak, Barry and Durbin, Richard and Gentleman, Robert and Krzywinski, Martin and Li, Heng and Nekrutenko, Anton and Robinson, James and Rasband, Wayne and Taylor, James and Trapnell, Cole},
title = {{nbt.2721}},
journal = {Nature Biotechnology},
year = {2013},
volume = {31},
number = {10},
pages = {894--897},
month = oct
}
@article{Korte:2004tm,
author = {Korte, JE and Korte, JE and Shain, RN and Shain, RN and Holden, AEC and Holden, AEC and Piper, JM and Piper, JM and Perdue, ST and Perdue, ST and Champion, JD and Champion, JD and Sterneckert, K and Sterneckert, K},
title = {{Reduction in sexual risk behaviors and infection rates among African Americans and Mexican Americans}},
journal = {Sexually Transmitted Diseases},
year = {2004},
volume = {31},
number = {3},
pages = {166--173}
}
@article{Moller:1994ui,
author = {Moller, AP and Birkhead, TR},
title = {{THE EVOLUTION OF PLUMAGE BRIGHTNESS IN BIRDS IS RELATED TO EXTRAPAIR PATERNITY}},
journal = {Evolution},
year = {1994},
volume = {48},
number = {4},
pages = {1089--1100}
}
@article{Brunelli:2007ca,
author = {Brunelli, Susan A and Hofer, Myron A},
title = {{Selective breeding for infant rat separation-induced ultrasonic vocalizations: developmental precursors of passive and active coping styles.}},
journal = {Behavioural Brain Research},
year = {2007},
volume = {182},
number = {2},
pages = {193--207},
month = sep
}
@article{SoriaHernanz:2008jq,
author = {Soria-Hernanz, D F and Braverman, J M and Hamilton, M B},
title = {{Parallel Rate Heterogeneity in Chloroplast and Mitochondrial Genomes of Brazil Nut Trees (Lecythidaceae) Is Consistent with Lineage Effects}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {7},
pages = {1282--1296},
month = apr
}
@article{Kerstens:2009fr,
author = {Kerstens, Hindrik HD and Crooijmans, Richard PMA and Veenendaal, Albertine and Dibbits, Bert W and Chin-A-Woeng, Thomas FC and den Dunnen, Johan T and Groenen, Martien AM},
title = {{Large scale single nucleotide polymorphism discovery in unsequenced genomes using second generation high throughput sequencing technology: applied to turkey}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {479}
}
@article{Archetti:2009gj,
author = {Archetti, Marco and D{\"o}ring, Thomas F and Hagen, Snorre B and Hughes, Nicole M and Leather, Simon R and Lee, David W and Lev-Yadun, Simcha and Manetas, Yiannis and Ougham, Helen J and Schaberg, Paul G and Thomas, Howard},
title = {{Unravelling the evolution of autumn colours: an interdisciplinary approach}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {3},
pages = {166--173},
month = mar
}
@article{Bergstrom:2006bn,
author = {Bergstrom, Carl T and Antia, Rustom},
title = {{How do adaptive immune systems control pathogens while avoiding autoimmunity?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {1},
pages = {22--28},
month = jan
}
@article{Menconi:2010bq,
author = {Menconi, F and Osman, R and Monti, M C and Greenberg, D A and Concepcion, E S and Tomer, Y},
title = {{Shared molecular amino acid signature in the HLA-DR peptide binding pocket predisposes to both autoimmune diabetes and thyroiditis}},
journal = {PNAS},
year = {2010},
volume = {107},
number = {39},
pages = {16899--16903},
month = sep
}
@article{Roberts:2005hp,
author = {Roberts, S Craig and Little, Anthony C and Gosling, L Morris and Perrett, David I and Carter, Vaughan and Jones, Benedict C and Penton-Voak, Ian and Petrie, Marion},
title = {{MHC-heterozygosity and human facial attractiveness}},
journal = {Evolution and Human Behavior},
year = {2005},
volume = {26},
number = {3},
pages = {213--226},
month = may
}
@article{Beery:2009gz,
author = {Beery, Annaliese K and Beery, Annaliese K and Routman, David M and Routman, David M and Zucker, Irving and Zucker, Irving},
title = {{Same-sex social behavior in meadow voles: Multiple and rapid formation of attachments.}},
journal = {Physiology {\&} Behavior},
year = {2009},
volume = {97},
number = {1},
pages = {52--57},
month = apr
}
@article{Revell:2009tn,
author = {Revell, T and Hayes, W},
title = {{Desert Iguanas (Dipsosaurus dorsalis) Sleep Less When in Close Proximity to a Rattlesnake Predator ( {\ldots}}},
journal = {Journal of Herpetology},
year = {2009}
}
@article{Fromhage:2005uz,
author = {Fromhage, L and Elgar, MA and Schneider, JM},
title = {{Faithful without care: The evolution of monogyny}},
journal = {Evolution},
year = {2005},
volume = {59},
number = {7},
pages = {1400--1405}
}
@article{Wagner:2007ft,
author = {Wagner, Aaron P and Creel, Scott and Frank, Laurence G and Kalinowski, Steven T},
title = {{Patterns of relatedness and parentage in an asocial, polyandrous striped hyena population}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {20},
pages = {4356--4369},
month = oct
}
@article{Juul:2012do,
author = {Juul, Kristian Vinter},
title = {{The evolutionary origin of the vasopressin/V2-type receptor/aquaporin axis and the urine-concentrating mechanism}},
journal = {Endocrine},
year = {2012},
volume = {42},
number = {1},
pages = {63--68},
month = feb
}
@article{Rehrauer:2013ha,
author = {Rehrauer, Hubert and Opitz, Lennart and Tan, Ge and Sieverling, Lina and Schlapbach, Ralph},
title = {{Blind spots of quantitative RNA-seq: the limits for assessing abundance, differential expression, and isoform switching}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {370}
}
@article{Maher:2009df,
author = {Maher, Christine R},
title = {{Effects of relatedness on social interaction rates in a solitary marmot}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {4},
pages = {925--933},
month = oct
}
@article{Sipos:2011fq,
author = {Sipos, Botond and Sipos, Botond and Massingham, Tim and Massingham, Tim and Jordan, Gregory E and Goldman, Nick},
title = {{PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment.}},
journal = {BMC Bioinformatics},
year = {2011},
volume = {12},
number = {1},
pages = {104},
month = apr
}
@article{Winther:2008io,
author = {Winther, R G},
title = {{Systemic Darwinism}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {33},
pages = {11833--11838},
month = aug
}
@article{Nunn:2002wh,
author = {Nunn, CL},
title = {{Spleen size, disease risk and sexual selection: a comparative study in primates}},
journal = {Evolutionary Ecology Research},
year = {2002},
volume = {4},
number = {1},
pages = {91--107}
}
@article{CluttonBrock:1984vy,
author = {Clutton-Brock, TH},
title = {{REPRODUCTIVE EFFORT AND TERMINAL INVESTMENT IN ITEROPAROUS ANIMALS}},
journal = {The American Naturalist},
year = {1984},
volume = {123},
number = {2},
pages = {212--229}
}
@article{Johnston:1998we,
author = {Johnston, M},
title = {{Gene chips: array of hope for understanding gene regulation}},
journal = {Current biology : CB},
year = {1998},
volume = {8},
number = {5},
pages = {R171--R174}
}
@article{ROSSLER:1995vd,
author = {ROSSLER, R and KLOEDEN, PE and ROSSLER, OE},
title = {{SLOWER AGING IN WOMEN - A PROPOSED EVOLUTIONARY EXPLANATION}},
journal = {Biosystems},
year = {1995},
volume = {36},
number = {3},
pages = {179--185}
}
@article{Bell:2009iz,
author = {Bell, A V and Richerson, P J and McElreath, R},
title = {{Culture rather than genes provides greater scope for the evolution of large-scale human prosociality}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {42},
pages = {17671--17674},
month = oct
}
@article{Alcaide:2011cp,
author = {Alcaide, Miguel and Edwards, Scott V and Edwards, Scott V},
title = {{Molecular evolution of the toll-like receptor multigene family in birds.}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {5},
pages = {1703--1715},
month = may
}
@article{Donelson:2012js,
author = {Donelson, Nathan and Donelson, Nathan and Kim, Eugene Z and Kim, Eugene Z and Slawson, Justin B and Slawson, Justin B and Vecsey, Christopher G and Vecsey, Christopher G and Huber, Robert and Huber, Robert and Griffith, Leslie C and Griffith, Leslie C},
title = {{High-Resolution Positional Tracking for Long-Term Analysis of \textit{Drosophila} Sleep and Locomotion Using the {\textquoteleft}{\textquoteleft}Tracker{\textquoteright}{\textquoteright} Program}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e37250},
month = may
}
@article{Vilcinskas:2013eg,
author = {Vilcinskas, A and Stoecker, K and Stoecker, K and Schmidtberg, H and Schmidtberg, H and Rohrich, C R and Rohrich, C R and Vogel, H},
title = {{Invasive Harlequin Ladybird Carries Biological Weapons Against Native Competitors}},
journal = {Science (New York, NY)},
year = {2013},
volume = {340},
number = {6134},
pages = {862--863},
month = may
}
@article{Worley:2006id,
author = {Worley, K and Carey, J and Veitch, A and Coltman, D W},
title = {{Detecting the signature of selection on immune genes in highly structured populations of wild sheep (Ovis dalli)}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {3},
pages = {623--637},
month = feb
}
@article{Hoffmann:2010fq,
author = {Hoffmann, M and Hilton-Taylor, C and Angulo, A and Bohm, M and Brooks, T M and Butchart, S H M and Carpenter, K E and Chanson, J and Collen, B and Cox, N A and Darwall, W R T and Dulvy, N K and Harrison, L R and Katariya, V and Pollock, C M and Quader, S and Richman, N I and Rodrigues, A S L and Tognelli, M F and Vie, J C and Aguiar, J M and Allen, D J and Allen, G R and Amori, G and Ananjeva, N B and andreone, F and andrew, P and Ortiz, A L A and Baillie, J E M and Baldi, R and Bell, B D and Biju, S D and Bird, J P and Black-Decima, P and Blanc, J J and Bolanos, F and Bolivar-G, W and Burfield, I J and Burton, J A and Capper, D R and Castro, F and Catullo, G and Cavanagh, R D and Channing, A and CHAO, N L and Chenery, A M and Chiozza, F and Clausnitzer, V and Collar, N J and Collett, L C and Collette, B B and Fernandez, C F C and Craig, M T and Crosby, M J and Cumberlidge, N and Cuttelod, A and Derocher, A E and Diesmos, A C and Donaldson, J S and Duckworth, J W and Dutson, G and Dutta, S K and Emslie, R H and Farjon, A and Fowler, S and Freyhof, J and Garshelis, D L and Gerlach, J and Gower, D J and Grant, T D and Hammerson, G A and Harris, R B and Heaney, L R and Hedges, S B and Hero, J M and Hughes, B and Hussain, S A and Icochea M, J and Inger, R F and Ishii, N and Iskandar, D T and Jenkins, R K B and Kaneko, Y and Kottelat, M and Kovacs, K M and Kuzmin, S L and La Marca, E and Lamoreux, J F and Lau, M W N and Lavilla, E O and Leus, K and Lewison, R L and Lichtenstein, G and Livingstone, S R and Lukoschek, V and Mallon, D P and McGowan, P J K and McIvor, A and Moehlman, P D and Molur, S and Alonso, A M and Musick, J A and Nowell, K and Nussbaum, R A and Olech, W and Orlov, N L and Papenfuss, T J and Parra-Olea, G and Perrin, W F and Polidoro, B A and Pourkazemi, M and Racey, P A and Ragle, J S and Ram, M and Rathbun, G and Reynolds, R P and Rhodin, A G J and Richards, S J and Rodriguez, L O and Ron, S R and Rondinini, C and Rylands, A B and Sadovy de Mitcheson, Y and Sanciangco, J C and Sanders, K L and Santos-Barrera, G and Schipper, J and Self-Sullivan, C and Shi, Y and Shoemaker, A and Short, F T and Sillero-Zubiri, C and Silvano, D L and Smith, K G and Smith, A T and Snoeks, J and Stattersfield, A J and Symes, A J and Taber, A B and Talukdar, B K and Temple, H J and Timmins, R and TOBIAS, J A and Tsytsulina, K and Tweddle, D and Ubeda, C and Valenti, S V and Paul van Dijk, P and Veiga, L M and Veloso, A and Wege, D C and Wilkinson, M and Williamson, E A and Xie, F and Young, B E and Akcakaya, H R and Bennun, L and Blackburn, T M and Boitani, L and Dublin, H T and da Fonseca, G A B and Gascon, C and Lacher, T E and Mace, G M and Mainka, S A and McNeely, J A and Mittermeier, R A and Reid, G M and Rodriguez, J P and Rosenberg, A A and Samways, M J and Smart, J and Stein, B A and Stuart, S N},
title = {{The Impact of Conservation on the Status of the World's Vertebrates}},
journal = {Science (New York, NY)},
year = {2010},
volume = {330},
number = {6010},
pages = {1503--1509},
month = dec
}
@article{Blake:1977ta,
author = {Blake, B H},
title = {{THE EFFECTS OF KIDNEY STRUCTURE AND THE ANNUAL CYCLE ON WATER REQUIREMENTS IN GOLDEN-MANTLED GROUND SQUIRRELS AND CHIPMUNKS}},
journal = {Comparative Biochemistry and Physiology Part A: {\ldots}},
year = {1977}
}
@article{Knapp:2006kk,
author = {Knapp, S and Knapp, S and Wieland, CW and Wieland, CW and Florquin, S and Florquin, S and Pantophlet, R and Pantophlet, R and Dijkshoorn, L and Dijkshoorn, L and Tshimbalanga, N and Tshimbalanga, N and Akira, S and Akira, S and van der Poll, T and van der Poll, T},
title = {{Differential roles of CD14 and Toll-like receptors 4 and 2 in murine Acinetobacter pneumonia}},
journal = {American Journal of Respiratory and Critical Care Medicine},
year = {2006},
volume = {173},
number = {1},
pages = {122--129}
}
@article{DAWSON:2010ey,
author = {DAWSON, MICHAEL N and DAWSON, MICHAEL N and GROSBERG, RICHARD K and STUART, YOEL E and STUART, YOEL E and SANFORD, ERIC},
title = {{Population genetic analysis of a recent range expansion: mechanisms regulating the poleward range limit in the volcano barnacle Tetraclita rubescens}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {8},
pages = {1585--1605}
}
@article{Wegrzyn:2009cq,
author = {Wegrzyn, J L and Lee, J M and Liechty, J and Neale, D B},
title = {{PineSAP--sequence alignment and SNP identification pipeline}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {19},
pages = {2609--2610},
month = sep
}
@article{Yang:2013kq,
author = {Yang, Nina and Yang, Nina and Xie, Wen and Xie, Wen and Yang, Xin and Yang, Xin and Wang, Shaoli and Wang, Shaoli and Wu, Qingjun and Wu, Qingjun and Li, Rumei and Li, Rumei and Pan, Huipeng and Pan, Huipeng and Liu, Baiming and Liu, Baiming and Shi, Xiaobin and Shi, Xiaobin and Fang, Yong and Fang, Yong and Xu, Baoyun and Xu, Baoyun and Zhou, Xuguo and Zhou, Xuguo and Zhang, Youjun and Zhang, Youjun},
title = {{Transcriptomic and Proteomic Responses of Sweetpotato Whitefly, Bemisia tabaci, to Thiamethoxam}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {5},
pages = {e61820},
month = may
}
@article{Adalat:2010gb,
author = {Adalat, Shazia and Bockenhauer, Detlef and Ledermann, Sarah E and Hennekam, Raoul C and Woolf, Adrian S},
title = {{Renal malformations associated with mutations of developmental genes: messages from the clinic}},
journal = {Pediatric nephrology (Berlin, Germany)},
year = {2010},
volume = {25},
number = {11},
pages = {2247--2255},
month = jul
}
@incollection{Peng:2011jk,
author = {Peng, Yu and Leung, Henry C M and Yiu, S M and Chin, Francis Y L},
title = {{T-IDBA: A \textit{de novo} Iterative \textit{de Bruijn} Graph Assembler for Transcriptome}},
booktitle = {Research in Computational Molecular Biology},
year = {2011},
pages = {337--338},
publisher = {Springer Berlin Heidelberg},
address = {Berlin, Heidelberg}
}
@article{Potterat:1999va,
author = {Potterat, John J and Potterat, John J and Zimmerman-Rogers, Helen and Zimmerman-Rogers, Helen and Muth, Stephen Q and Muth, Stephen Q and Rothenberg, Richard B and Rothenberg, Richard B and Green, David L and Green, David L and Taylor, Jerry E and Taylor, Jerry E and Bonney, Mandy S and Bonney, Mandy S and White, Helen A and White, Helen A},
title = {{Chlamydia transmission: Concurrency, reproduction number, and the epidemic trajectory}},
journal = {American Journal of Epidemiology},
year = {1999},
volume = {150},
number = {12},
pages = {1331--1339}
}
@article{Benedict:2008cl,
author = {Benedict, Lauryn},
title = {{Unusually high levels of extrapair paternity in a duetting songbird with long-term pair bonds}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {6},
pages = {983--988},
month = dec
}
@article{Shoji:2010hd,
author = {Shoji, Itaru and Hirose, Takuo and Mori, Nobuyoshi and Hiraishi, Keisuke and Kato, Ichiro and Shibasaki, Akiko and Yamamoto, Hajime and Ohba, Koji and Kaneko, Kiriko and Morimoto, Ryo and Satoh, Fumitoshi and Kohzuki, Masahiro and Totsune, Kazuhito and Takahashi, Kazuhiro},
title = {{Expression of kisspeptins and kisspeptin receptor in the kidney of chronic renal failure rats}},
journal = {Peptides},
year = {2010},
volume = {31},
number = {10},
pages = {1920--1925},
month = oct
}
@article{Wurm:2011kf,
author = {Wurm, Y and Wang, J and Riba-Grognuz, O and Corona, M and Nygaard, S and Hunt, B G and Ingram, K K and Falquet, L and Nipitwattanaphon, M and Gotzek, D and Dijkstra, M B and Oettler, J and Comtesse, F and Shih, C J and Wu, W J and Yang, C C and Thomas, J and Beaudoing, E and Pradervand, S and Flegel, V and Cook, E D and Fabbretti, R and Stockinger, H and Long, L and Farmerie, W G and Oakey, J and Boomsma, J J and PAMILO, P and Yi, S V and Heinze, J and Goodisman, M A D and Farinelli, L and Harshman, K and Hulo, N and Cerutti, L and Xenarios, I and Shoemaker, D and Keller, L},
title = {{The genome of the fire ant Solenopsis invicta}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {14},
pages = {5679--5684},
month = apr
}
@article{EsteveCodina:2011gk,
author = {Esteve-Codina, Anna and Esteve-Codina, Anna and Kofler, Robert and Kofler, Robert and Palmieri, Nicola and Palmieri, Nicola and Bussotti, Giovanni and Bussotti, Giovanni and Notredame, Cedric and Notredame, Cedric and Perez-Enciso, Miguel},
title = {{Exploring the gonad transcriptome of two extreme male pigs with RNA-seq}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {552},
month = nov
}
@article{Koch:2011fa,
author = {Koch, Hauke and Schmid-Hempel, Paul},
title = {{Socially transmitted gut microbiota protect bumble bees against an intestinal parasite.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {48},
pages = {19288--19292},
month = nov
}
@article{Anonymous:LhSgsbCB,
title = {{Fugita job app}},
year = {2010},
pages = {1--7},
month = sep
}
@article{Kim:2009bs,
author = {Kim, Jong-Il and Ju, Young Seok and Park, Hansoo and Kim, Sheehyun and Lee, Seonwook and Yi, Jae-Hyuk and Mudge, Joann and Miller, Neil A and Hong, Dongwan and Bell, Callum J and Kim, Hye-Sun and Chung, In-Soon and Lee, Woo-Chung and Lee, Ji-Sun and Seo, Seung-Hyun and Yun, Ji-Young and Woo, Hyun Nyun and Lee, Heewook and Suh, Dongwhan and Lee, Seungbok and Kim, Hyun-Jin and Yavartanoo, Maryam and Kwak, Minhye and Zheng, Ying and Lee, Mi Kyeong and Park, Hyunjun and Kim, Jeong Yeon and Gokcumen, Omer and Mills, Ryan E and Zaranek, Alexander Wait and Thakuria, Joseph and Wu, Xiaodi and Kim, Ryan W and Huntley, Jim J and Luo, Shujun and Schroth, Gary P and Wu, Thomas D and Kim, HyeRan and Yang, Kap-Seok and Park, Woong-Yang and Kim, Hyungtae and Church, George M and Lee, Charles and Kingsmore, Stephen F and Seo, Jeong-Sun},
title = {{A highly annotated whole-genome sequence of a Korean individual}},
journal = {Nature},
year = {2009},
month = jul
}
@article{Fazeli:2004fe,
author = {Fazeli, A},
title = {{Sperm-Induced Modification of the Oviductal Gene Expression Profile After Natural Insemination in Mice}},
journal = {Biology of Reproduction},
year = {2004},
volume = {71},
number = {1},
pages = {60--65},
month = jul
}
@article{Rubenstein:2009bz,
author = {Rubenstein, Dustin R and Lovette, Irby J},
title = {{Reproductive skew and selection on female ornamentation in social species}},
journal = {Nature},
year = {2009},
volume = {462},
number = {7274},
pages = {786--789},
month = dec
}
@article{Tishkoff:2012hk,
author = {Tishkoff, Joseph Lachance Benjamin Vernot ClaranbspC Elbers Bart Ferwerda Alain Froment Jean-Marie Bodo Godfrey Lema Wenqing Fu ThomasnbspB Nyambo TimothynbspR Rebbeck Kun Zhang JoshuanbspM Akey SarahnbspA and Tishkoff, Joseph Lachance Benjamin Vernot ClaranbspC Elbers Bart Ferwerda Alain Froment Jean-Marie Bodo Godfrey Lema Wenqing Fu ThomasnbspB Nyambo TimothynbspR Rebbeck Kun Zhang JoshuanbspM Akey SarahnbspA and Vernot, Benjamin and Elbers, Clara C and Elbers, Clara C and Ferwerda, Bart and Ferwerda, Bart and Froment, Alain and Froment, Alain and Bodo, Jean-Marie and Bodo, Jean-Marie and Lema, Godfrey and Lema, Godfrey and Fu, Wenqing and Fu, Wenqing and Nyambo, Thomas B and Nyambo, Thomas B and Rebbeck, Timothy R and Rebbeck, Timothy R and Zhang, Kun and Akey, Joshua M and Tishkoff, Sarah A and Tishkoff, Sarah A},
title = {{Evolutionary History and Adaptation from High-Coverage Whole-Genome Sequences of Diverse African Hunter-Gatherers}},
journal = {Cell},
year = {2012},
pages = {1--13},
month = jul
}
@article{ODONALD:1974ug,
author = {ODONALD, P and ODONALD, P},
title = {{POLYMORPHISMS MAINTAINED BY SEXUAL SELECTION IN MONOGAMOUS SPECIES OF BIRDS}},
journal = {Heredity},
year = {1974},
volume = {32},
number = {FEB},
pages = {1--10}
}
@article{Bai:2009ib,
author = {Bai, Xiaodong and Adams, Byron J and Ciche, Todd A and Clifton, Sandra and Gaugler, Randy and Hogenhout, Saskia A and Spieth, John and Sternberg, Paul W and Wilson, Richard K and Grewal, Parwinder S},
title = {{Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {205}
}
@article{Harf:2005cc,
author = {Harf, R and Sommer, S},
title = {{Association between major histocompatibility complex class II DRB alleles and parasite load in the hairy-footed gerbil, Gerbillurus paeba, in the southern Kalahari}},
journal = {Molecular Ecology},
year = {2004},
volume = {14},
number = {1},
pages = {85--91},
month = dec
}
@article{Cooke:2012dh,
author = {Cooke, G M and Cooke, G M and CHAO, N L and CHAO, N L and BEHEREGARAY, L B and BEHEREGARAY, L B},
title = {{Natural selection in the water: freshwater invasion and adaptation by water colour in the Amazonian pufferfish}},
journal = {Journal of Evolutionary Biology},
year = {2012},
pages = {no--no},
month = may
}
@article{Anonymous:pDgFgPZ9,
title = {{Short-refcard}},
year = {2004},
pages = {1--4},
month = nov
}
@article{Robertson:2010ih,
author = {Robertson, Gordon and Schein, Jacqueline and Chiu, Readman and Corbett, Richard and Field, Matthew and Jackman, Shaun D and Mungall, Karen and Lee, Sam and Okada, Hisanaga Mark and Qian, Jenny Q and Griffith, Malachi and Raymond, Anthony and Thiessen, Nina and Cezard, Timothee and Butterfield, Yaron S and Newsome, Richard and Chan, Simon K and She, Rong and Varhol, Richard and Kamoh, Baljit and Prabhu, Anna-Liisa and Tam, Angela and Zhao, Yongjun and Moore, Richard A and Hirst, Martin and Marra, Marco A and Jones, Steven J M and Hoodless, Pamela A and Birol, Inan{\c c}},
title = {{\textit{De novo} assembly and analysis of RNA-seq data}},
journal = {Nature Methods},
year = {2010},
volume = {7},
number = {11},
pages = {909--912},
month = oct
}
@article{Magnanou:2009ho,
author = {Magnanou, E and Malenke, J R and Dearing, M D},
title = {{Expression of biotransformation genes in woodrat ( Neotoma) herbivores on novel and ancestral diets: identification of candidate genes responsible for dietary shifts}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {11},
pages = {2401--2414},
month = jun
}
@article{Evans:2011gy,
author = {Evans, Melissa L and Dionne, Melanie and Miller, Kristina M and Bernatchez, Louis},
title = {{Mate choice for major histocompatibility complex genetic divergence as a bet-hedging strategy in the Atlantic salmon (Salmo salar).}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
month = jun
}
@article{Lee:2010bl,
author = {Lee, Sunmi and Lee, Sunmi and Chowell, Gerardo and Chowell, Gerardo and Castillo-Ch{\'a}vez, Carlos and Castillo-Ch{\'a}vez, Carlos},
title = {{Optimal control for pandemic influenza: the role of limited antiviral treatment and isolation.}},
journal = {Journal of Theoretical Biology},
year = {2010},
volume = {265},
number = {2},
pages = {136--150},
month = jul
}
@article{Turner:2006et,
author = {Turner, L M},
title = {{Adaptive Evolution of Fertilization Proteins within a Genus: Variation in ZP2 and ZP3 in Deer Mice (\textit{Peromyscus})}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {23},
number = {9},
pages = {1656--1669},
month = jun
}
@article{Stehr:1968vy,
author = {Stehr, F W and Cook, E F},
title = {{A revision of the genus \emph{\textit{Malacosoma}} Hubner in North
America (Lepidoptera: Lasiocampidae): systematics, biology, immatures, and
parasites.}},
journal = {U.S. Nat. Mus. Bull},
year = {1968}
}
@article{Oyola:2012gx,
author = {Oyola, Samuel O and Oyola, Samuel O and Otto, Thomas D and Gu, Yong and Maslen, Gareth and Maslen, Gareth and Manske, Magnus and Manske, Magnus and Campino, Susana and Campino, Susana and Turner, Daniel J and MacInnis, Bronwyn and MacInnis, Bronwyn and Kwiatkowski, Dominic P and Kwiatkowski, Dominic P and Swerdlow, Harold P and Quail, Michael A},
title = {{Optimizing illumina next-generation sequencing library preparation for extremely at-biased genomes}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {1},
month = jan
}
@article{Jones:2009jf,
author = {Jones, Adam G},
title = {{ON THE OPPORTUNITY FOR SEXUAL SELECTION, THE BATEMAN GRADIENT AND THE MAXIMUM INTENSITY OF SEXUAL SELECTION}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {7},
pages = {1673--1684},
month = jul
}
@article{Mills:2009gv,
author = {Mills, Suzanne C and Grapputo, Alessandro and Jokinen, Ilmari and Koskela, Esa and Mappes, Tapio and Poikonen, Tanja},
title = {{FITNESS TRADE-OFFS MEDIATED BY IMMUNOSUPPRESSION COSTS IN A SMALL MAMMAL}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {1},
pages = {166--179},
month = jan
}
@article{Fedorka:2011kx,
author = {Fedorka, Kenneth M and Winterhalter, Wade E and Ware, Brian},
title = {{PERCEIVED SPERM COMPETITION INTENSITY INFLUENCES SEMINAL FLUID PROTEIN PRODUCTION PRIOR TO COURTSHIP AND MATING}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {2},
pages = {584--590},
month = nov
}
@article{Barnosky:2011fv,
author = {Barnosky, Anthony D and Matzke, Nicholas and Tomiya, Susumu and Wogan, Guinevere O U and Swartz, Brian and Quental, Tiago B and Marshall, Charles and Mcguire, Jenny L and Lindsey, Emily L and Maguire, Kaitlin C and Mersey, Ben and Ferrer, Elizabeth A},
title = {{Has the Earth{\textquoteright}s sixth mass extinction already arrived?}},
journal = {Nature},
year = {2011},
volume = {471},
number = {7336},
pages = {51--57},
month = mar
}
@techreport{Kuhn:2014dn,
author = {Kuhn, M and Beyer, A},
title = {{Conservation of expression regulation throughout the animal kingdom}},
year = {2014},
month = jul
}
@article{Maiden:2006df,
author = {Maiden, Martin C J},
title = {{Multilocus Sequence Typing of Bacteria}},
journal = {Annual Review of Microbiology},
year = {2006},
volume = {60},
number = {1},
pages = {561--588},
month = oct
}
@article{Taruishi:2008fe,
author = {Taruishi, Midori and Yoshimatsu, Kumiko and Hatsuse, Rei and Okumura, Megumi and Nakamura, Ichiro and Arikawa, Jiro},
title = {{Lack of vertical transmission of Hantaan virus from persistently infected dam to progeny in laboratory mice}},
journal = {Archives of Virology},
year = {2008},
volume = {153},
number = {8},
pages = {1605--1609},
month = jul
}
@article{Khan:2010it,
author = {Khan, Faisal and Sar, Aylin and Gonul, Ipek and Benediktsson, Hallgrimur and Doulla, Jagdeep and Yilmaz, Serdar and Berka, Noureddine},
title = {{Graft Inflammation and Histologic Indicators of Kidney Chronic Allograft Failure: Low-Expressing Interleukin-10 Genotypes Cannot Be Ignored}},
journal = {Transplantation},
year = {2010},
volume = {90},
number = {6},
pages = {630--638},
month = sep
}
@article{RISSING:1988va,
author = {RISSING, SW and RISSING, SW},
title = {{Seed-Harvester Ant Association with Shrubs - Competition for Water in the Mohave Desert}},
journal = {Ecology},
year = {1988},
volume = {69},
number = {3},
pages = {809--813}
}
@article{Lozier:2013jk,
author = {Lozier, J D},
title = {{Revisiting comparisons of genetic diversity in stable and declining species: Assessing genome-wide polymorphism in North American bumble bees using RAD sequencing}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = dec
}
@book{Fisher:1930wy,
author = {Fisher, RA},
title = {{The Genetical Theory of Natural Selection}},
publisher = {Oxford University},
year = {1930},
address = {London}
}
@article{Ribble:1992uo,
author = {Ribble, David O},
title = {{Lifetime reproductive success and its correlates in the monogamous rodent, \emph{\textit{Peromyscus} \textit{californicus}}}},
journal = {Journal of Animal Ecology},
year = {1992},
volume = {61},
number = {2},
pages = {457--468}
}
@article{Anonymous:GjrSh4M3,
title = {{Kinship does not affect vigilance in Columbian ground squirrels (Urocitellus columbianus)}},
year = {2010},
pages = {1--5},
month = feb
}
@article{Brown:2007eya,
author = {Brown, C J and Wong, M and Davis, C C and Kanti, A and Zhou, X and Forney, L J},
title = {{Preliminary characterization of the normal microbiota of the human vulva using cultivation-independent methods}},
journal = {Journal of Medical Microbiology},
year = {2007},
volume = {56},
number = {2},
pages = {271--276},
month = feb
}
@article{Bolund:2009ff,
author = {Bolund, E and Schielzeth, H and Forstmeier, W},
title = {{Compensatory investment in zebra finches: females lay larger eggs when paired to sexually unattractive males}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1657},
pages = {707--715},
month = feb
}
@article{Vasquez:2008eb,
author = {Vasquez, Gissella M and Silverman, Jules},
title = {{Queen acceptance and the complexity of nestmate discrimination in the Argentine ant}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {4},
pages = {537--548},
month = oct
}
@article{Fernando:2008uc,
author = {Fernando, Michelle M A and Stevens, Christine R and Stevens, Christine R and Walsh, Emily C and de Jager, Philip L and de Jager, Philip L and Goyette, Philippe and Goyette, Philippe and Plenge, Robert M and Plenge, Robert M and Vyse, Timothy J and Vyse, Timothy J and Rioux, John D},
title = {{Defining the role of the MHC in autoimmunity: A review and pooled analysis}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {4},
pages = {e1000024}
}
@article{Rivera:2010fc,
author = {Rivera, Angel J and Rivera, Angel J and Stumpf, Rebecca M and Stumpf, Rebecca M and Wilson, Brenda and Wilson, Brenda and Leigh, Steve and Leigh, Steve and Salyers, Abigail A and Salyers, Abigail A},
title = {{Baboon vaginal microbiota: an overlooked aspect of primate physiology}},
journal = {American Journal of Primatology},
year = {2010},
pages = {n/a--n/a}
}
@article{Beaumont:2010fk,
author = {Beaumont, Mark A and Nielsen, Rasmus and Robert, Christian and Hey, Jody and Gaggiotti, Oscar and Knowles, Lacey and Estoup, Arnaud and Panchal, Mahesh and Corander, Jukka and Hickerson, Mike and Sisson, Scott A and Fagundes, Nelson and Chikhi, Loun{\`e}s and Beerli, Peter and Vitalis, Renaud and Cornuet, Jean-Marie and Huelsenbeck, John and Foll, Matthieu and Yang, Ziheng and Rousset, Francois and Balding, David and Excoffier, Laurent},
title = {{In defence of model-based inference in phylogeography}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {3},
pages = {436--446},
month = feb
}
@article{Huang:2003vm,
author = {Huang, Yan and Tola, Vicky B and Tola, Vicky B and Fang, Pingke and Soybel, David I and Soybel, David I and Van Hoek, Alfred N},
title = {{Partitioning of aquaporin-4 water channel mRNA and protein in gastric glands.}},
journal = {Digestive diseases and sciences},
year = {2003},
volume = {48},
number = {10},
pages = {2027--2036},
month = oct
}
@article{Stiver:2008io,
author = {Stiver, Julie R and Apa, Anthony D and Remington, Thomas E and Gibson, Robert M},
title = {{Polygyny and female breeding failure reduce effective population size in the lekking Gunnison sage-grouse}},
journal = {Biological Conservation},
volume = {141},
pages = {472--481}
}
@article{Taylor:2007hs,
author = {Taylor, P D and Wild, G and Gardner, A},
title = {{Direct fitness or inclusive fitness: how shall we model kin selection?}},
journal = {Journal of Evolutionary Biology},
year = {2007},
volume = {20},
number = {1},
pages = {301--309},
month = jan
}
@article{Wilson:2010vg,
author = {Wilson, Joseph S and Pitts, James P},
title = {{Phylogeographic analysis of the nocturnal velvet ant genus Dilophotopsis (Hymenoptera: Mutillidae) provides insights into diversification in the Nearctic deserts}},
journal = {Biological Journal of The Linnean Society},
year = {2010},
volume = {101},
number = {2},
pages = {360--375}
}
@article{HUNTER:1993wq,
author = {HUNTER, FM and Petrie, M and OTRONEN, M and BIRKHEAD, T and Moller, AP},
title = {{WHY DO FEMALES COPULATE REPEATEDLY WITH ONE MALE}},
journal = {Trends In Ecology {\&} Evolution},
year = {1993},
volume = {8},
number = {1},
pages = {21--26}
}
@article{Huntley:1984us,
author = {Huntley, A C and Costa, D P and Rubin, R D},
title = {{The contribution of nasal countercurrent heat exchange to water balance in the northern elephant seal, \textit{Mirounga} \textit{angustirostris}.}},
journal = {The Journal of experimental biology},
year = {1984},
volume = {113},
pages = {447--454},
month = nov
}
@article{Gerspach:2010kt,
author = {Gerspach, C and Bateman, S and Sherding, R and Chew, D J and Besier, A S and Grieves, J L and Lakritz, J},
title = {{Acute Renal Failure and Anuria Associated with Vitamin D Intoxication in Two Alpaca ( Vicugna pacos) Cria}},
journal = {Journal of Veterinary Internal Medicine},
year = {2010},
volume = {24},
number = {2},
pages = {443--449},
month = mar
}
@article{Storm:2008ty,
author = {Storm, Jonathan J and Ritzi, Christopher M},
title = {{Ectoparasites of small mammals in western Iowa}},
journal = {Northeastern Naturalist},
year = {2008},
volume = {15},
number = {2},
pages = {283--292}
}
@article{Tietje:2008vu,
author = {Tietje, William D and Lee, Derek E and Lee, Derek E and Vreeland, Justin K and Vreeland, Justin K},
title = {{Survival and abundance of three species of mice in relation to density of shrubs and prescribed fire in understory of an oak woodland in California}},
journal = {Southwestern Naturalist},
year = {2008},
volume = {53},
number = {3},
pages = {357--369}
}
@article{Albert:2009jz,
author = {Albert, F W and Carlborg, O and Plyusnina, I and Besnier, F and Hedwig, D and Lautenschlager, S and Lorenz, D and McIntosh, J and Neumann, C and Richter, H and Zeising, C and Kozhemyakina, R and Shchepina, O and Kratzsch, J and Trut, L and Teupser, D and Thiery, J and Schoneberg, T and andersson, L and Paabo, S},
title = {{Genetic Architecture of Tameness in a Rat Model of Animal Domestication}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {2},
pages = {541--554},
month = jun
}
@article{Klug:2009cq,
author = {Klug, Hope and Bonsall, Michael B},
title = {{LIFE HISTORY AND THE EVOLUTION OF PARENTAL CARE}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {3},
pages = {823--835},
month = mar
}
@article{Zhang:2014fx,
author = {Zhang, Jian and Feng, Jianju and Lu, Jing and Yang, Yongzhi and Zhang, Xu and Wan, Dongshi and Liu, Jianquan},
title = {{Transcriptome differences between two sister desert poplar species under salt stress}},
journal = {BMC Genomics},
year = {2014},
volume = {15},
number = {1},
pages = {337}
}
@article{MunozNajar:2011fc,
author = {Munoz-Najar, Ursula and Sedivy, John M},
title = {{Epigenetic Control of Aging}},
journal = {Antioxidants {\&} Redox Signaling},
year = {2011},
volume = {14},
number = {2},
pages = {241--259},
month = jan
}
@article{Bollmer:2006ei,
author = {Bollmer, Jennifer L and Kimball, Rebecca T and Whiteman, Noah Kerness and Sarasola, Jos{\'e} Hern{\'a}n and Parker, Patricia G},
title = {{Phylogeography of the Gal{\'a}pagos hawk (\textit{Buteo galapagoensis}): A recent arrival to the Gal{\'a}pagos Islands}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2006},
volume = {39},
number = {1},
pages = {237--247},
month = apr
}
@article{Kleven:2006iq,
author = {Kleven, Oddmund and Jacobsen, Frode and Izadnegahdar, Rasa and Robertson, Raleigh J and Lifjeld, Jan T},
title = {{Male tail streamer length predicts fertilization success in the North American barn swallow (Hirundo rustica erythrogaster)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2005},
volume = {59},
number = {3},
pages = {412--418},
month = oct
}
@article{Barkman:2009bj,
author = {Barkman, Todd and Zhang, Jianzhi},
title = {{Evidence for escape from adaptive conflict?}},
journal = {Nature},
year = {2009},
volume = {462},
number = {7274},
pages = {E1--E1},
month = dec
}
@article{Poteaux:2008ur,
author = {Poteaux, Chantal and Busquet, Nicolas and Gouat, Patrick and Katona, Krisztian and Baudoin, Claude},
title = {{Socio-genetic structure of mound-building mice, \emph{Mus spicilegus}, in autumn and early spring}},
journal = {Biological Journal of The Linnean Society},
year = {2008},
volume = {93},
number = {4},
pages = {689--699}
}
@article{FASTXToolkit:wr,
author = {Hannon, G},
title = {{FASTX Toolkit}}
}
@article{Louzada:2008iz,
author = {Louzada, Sandra and Pa{\c c}o, Ana and Kubickova, Svatava and Adega, Filomena and Guedes-Pinto, Henrique and Rubes, Jiri and Chaves, Raquel},
title = {{Different evolutionary trails in the related genomes Cricetus cricetus and \textit{Peromyscus} \textit{eremicus} (Rodentia, Cricetidae) uncovered by orthologous satellite DNA repositioning}},
journal = {Micron},
year = {2008},
volume = {39},
number = {8},
pages = {1149--1155},
month = dec
}
@article{Parsch:2009iq,
author = {Parsch, J and Zhang, Z and Baines, J F},
title = {{The Influence of Demography and Weak Selection on the McDonald-Kreitman Test: An Empirical Study in \textit{Drosophila}}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {26},
number = {3},
pages = {691--698},
month = dec
}
@article{Liu:2012iv,
author = {Liu, Binghang and Yuan, Jianying and Yiu, Siu-Ming and Li, Zhenyu and Xie, Yinlong and Chen, Yanxiang and Shi, Yujian and Zhang, Hao and Li, Yingrui and Lam, Tak-Wah and Luo, Ruibang},
title = {{COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {22},
pages = {2870--2874},
month = nov
}
@book{Anonymous:2006taa,
publisher = {Elsevier},
year = {2006}
}
@article{Tezuka:2012ju,
author = {Tezuka, Ayumi and Tezuka, Ayumi and Matsushima, Noe and Matsushima, Noe and Nemoto, Yoriko and Nemoto, Yoriko and Akashi, Hiroshi D and Akashi, Hiroshi D and Kawata, Masakado and Kawata, Masakado and Makino, Takashi and Makino, Takashi},
title = {{Comprehensive Primer Design for Analysis of Population Genetics in Non-Sequenced Organisms}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e32314},
month = feb
}
@article{Wild:2009ky,
author = {Wild, Geoff and Gardner, andy and West, Stuart A},
title = {{Adaptation and the evolution of parasite virulence in a connected world}},
journal = {Nature},
year = {2009},
volume = {459},
number = {7249},
pages = {983--986},
month = may
}
@article{Carlsson:2008id,
author = {Carlsson, J},
title = {{Effects of Microsatellite Null Alleles on Assignment Testing}},
journal = {Journal of Heredity},
year = {2008},
volume = {99},
number = {6},
pages = {616--623},
month = may
}
@article{Tamuri:2012hv,
author = {Tamuri, A U and dos Reis, M and Goldstein, R A},
title = {{Estimating the Distribution of Selection Coefficients from Phylogenetic Data Using Sitewise Mutation-Selection Models}},
journal = {Genetics},
year = {2012},
volume = {190},
number = {3},
pages = {1101--1115},
month = mar
}
@article{Maher:2009ju,
author = {Maher, Christine R},
title = {{Genetic relatedness and space use in a behaviorally flexible species of marmot, the woodchuck (Marmota monax)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {6},
pages = {857--868},
month = mar
}
@article{CarvajalRodriguez:2008iw,
author = {Carvajal-Rodr{\'\i}guez, A},
title = {{Detecting recombination and diversifying selection in human alpha-papillomavirus}},
journal = {Infection, Genetics and Evolution},
year = {2008},
volume = {8},
number = {5},
pages = {689--692},
month = sep
}
@article{Tracy:2000vv,
author = {Tracy, RL and Walsberg, GE},
title = {{Prevalence of cutaneous evaporation in Merriam's kangaroo rat and its adaptive variation at the subspecific level}},
journal = {The Journal of experimental biology},
year = {2000},
volume = {203},
number = {4},
pages = {773--781}
}
@article{Veal:2001vp,
author = {Veal, R and Caire, W},
title = {{\textit{Peromyscus} \textit{eremicus}}},
journal = {Mammalian Species},
year = {2001},
volume = {118},
pages = {1--6},
month = dec
}
@article{Caspers:2011jf,
author = {Caspers, Barbara A and Caspers, Barbara A and Schroeder, Frank C and Schroeder, Frank C and Franke, Stephan and Franke, Stephan and Voigt, Christian C},
title = {{Scents of Adolescence: The Maturation of the Olfactory Phenotype in a Free-Ranging Mammal}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {6},
pages = {e21162},
month = jun
}
@article{Scheetz:2002uy,
author = {Scheetz, T and Bartlett, JA and Walters, JD and Schutte, BC and Schutte, BC and Casavant, TL and McCray, PB and McCray, PB},
title = {{Genomics-based approaches to gene discovery in innate immunity}},
journal = {Immunological Reviews},
year = {2002},
volume = {190},
number = {1},
pages = {137--145}
}
@article{Emlen:1995vi,
author = {Emlen, ST},
title = {{An evolutionary theory of the family}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1995},
volume = {92},
number = {18},
pages = {8092--8099},
month = aug
}
@article{Anonymous:MZUIpUDV,
title = {{Condor 2006 Pearson}},
year = {2002},
pages = {40},
month = may
}
@article{Krystufek:2009wf,
author = {Krystufek, Boris and Buzan, Elena V and Buzan, Elena V and Vohralik, Vladimir and Vohralik, Vladimir and Zareie, Roghaieh and Zareie, Roghaieh and Ozkan, Beytullah and Ozkan, Beytullah},
title = {{Mitochondrial cytochrome b sequence yields new insight into the speciation of social voles in south-west Asia}},
journal = {Biological Journal of The Linnean Society},
year = {2009},
volume = {98},
number = {1},
pages = {121--128}
}
@article{Agrawal:2001wt,
author = {Agrawal, AF},
title = {{Kin recognition and the evolution of altruism}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2001},
volume = {268},
number = {1471},
pages = {1099--1104}
}
@article{Li:2010kv,
author = {Li, H and Homer, N},
title = {{A survey of sequence alignment algorithms for next-generation sequencing}},
journal = {Briefings In Bioinformatics},
year = {2010},
volume = {11},
number = {5},
pages = {473--483},
month = sep
}
@article{Fletcher:2006jg,
author = {Fletcher, Jeffrey A and Zwick, Martin and Doebeli, Michael and Wilson, David Sloan},
title = {{What's wrong with inclusive fitness?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {11},
pages = {597--598},
month = nov
}
@article{Tazzyman:2009fm,
author = {Tazzyman, Samuel J and Pizzari, Tommaso and Seymour, Robert M and Pomiankowski, andrew},
title = {{The Evolution of Continuous Variation in Ejaculate Expenditure Strategy}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {3},
pages = {E71--E82},
month = sep
}
@article{Bonin:2008ig,
author = {Bonin, Aurelie},
title = {{Population genomics: a new generation of genome scans to bridge the gap with functional genomics}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {16},
pages = {3583--3584},
month = aug
}
@article{Stumpf:2005ft,
author = {Stumpf, RM and Boesch, C},
title = {{Does promiscuous mating preclude female choice? Female sexual strategies in chimpanzees (Pan troglodytes verus) of the Tai National Park, Cote d'Ivoire}},
journal = {Behavioral Ecology and Sociobiology},
year = {2005},
volume = {57},
number = {5},
pages = {511--524}
}
@article{Hauver:2010bh,
author = {Hauver, Stephanie A and Gehrt, Stanley D and Prange, Suzanne and Dubach, Jean},
title = {{Behavioral and genetic aspects of the raccoon mating system}},
journal = {Journal of Mammalogy},
year = {2010},
volume = {91},
number = {3},
pages = {749--757},
month = jun
}
@article{Li:2011kr,
author = {Li, Heng},
title = {{Improving SNP discovery by base alignment quality.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {8},
pages = {1157--1158},
month = apr
}
@article{Kumar:2007gt,
author = {Kumar, S and Dudley, J},
title = {{Bioinformatics software for biologists in the genomics era}},
journal = {Bioinformatics (Oxford, England)},
year = {2007},
volume = {23},
number = {14},
pages = {1713--1717},
month = aug
}
@article{Nishitani:2006gg,
author = {Nishitani, Chiaki and Nishitani, Chiaki and Mitsuzawa, Hiroaki and Mitsuzawa, Hiroaki and Sano, Hitomi and Sano, Hitomi and Shimizu, Takeyuki and Shimizu, Takeyuki and Matsushima, Norio and Kuroki, Yoshio and Kuroki, Yoshio},
title = {{Toll-like receptor 4 region Glu(24)-Lys(47) is a site for MD-2 binding - Importance of Cys(29) and Cys(40)}},
journal = {The Journal of biological chemistry},
year = {2006},
volume = {281},
number = {50},
pages = {38322--38329}
}
@article{Dunn:2008ky,
author = {Dunn, Casey W and Hejnol, andreas and Matus, David Q and Pang, Kevin and Browne, William E and Smith, Stephen A and Seaver, Elaine and Rouse, Greg W and Obst, Matthias and Edgecombe, Gregory D and S{\o}rensen, Martin V and Haddock, Steven H D and Schmidt-Rhaesa, andreas and Okusu, Akiko and Kristensen, Reinhardt M{\o}bjerg and Wheeler, Ward C and Martindale, Mark Q and Giribet, Gonzalo},
title = {{Broad phylogenomic sampling improves resolution of the animal tree of life}},
journal = {Nature},
year = {2008},
volume = {452},
number = {7188},
pages = {745--749},
month = mar
}
@article{Brettin:2005uz,
author = {Brettin, T and Brettin, T and Altherr, MR and Altherr, MR and Du, Y and Du, Y and Mason, RM and Mason, RM and Friedrich, A and Friedrich, A and Potter, L and Potter, L and Langford, C and Langford, C and Keller, TJ and Keller, TJ and Jens, J and Jens, J and Howie, H and Howie, H},
title = {{Expression capable library for studies of Neisseria gonorrhoeae, version 1.0}},
journal = {BMC Microbiology},
year = {2005},
volume = {5},
pages = {50}
}
@article{Aguileta:2009kj,
author = {Aguileta, Gabriela and Refr{\'e}gier, Guislaine and Yockteng, Roxana and Fournier, Elisabeth and Giraud, Tatiana},
title = {{Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists}},
journal = {Infection, Genetics and Evolution},
year = {2009},
volume = {9},
number = {4},
pages = {656--670},
month = jul
}
@article{Myers:2011jl,
author = {Myers, Rachel A and Casals, Ferran and Gauthier, Julie and Hamdan, Fadi F and Keebler, Jon and Boyko, Adam R and Bustamante, Carlos D and Piton, Amelie M and Spiegelman, Dan and Henrion, Edouard and Zilversmit, Martine and Hussin, Julie and Quinlan, Jacklyn and Yang, Yan and Lafreniere, Ronald G and Griffing, Alexander R and Stone, Eric A and Rouleau, Guy A and Awadalla, Philip},
title = {{A Population Genetic Approach to Mapping Neurological Disorder Genes Using Deep Resequencing}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {2},
pages = {e1001318},
month = feb
}
@article{Arthur:2011jc,
author = {Arthur, R K and Ruvinsky, I},
title = {{Evidence That Purifying Selection Acts on Promoter Sequences}},
journal = {Genetics},
year = {2011},
volume = {189},
number = {3},
pages = {1121--1126},
month = nov
}
@article{Piyapong:2010cv,
author = {Piyapong, C and Butlin, R K and Faria, J J and Scruton, K J and Wang, J and Krause, J},
title = {{Kin assortment in juvenile shoals in wild guppy populations}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {5},
pages = {749--756},
month = sep
}
@article{Wang:2012hv,
author = {Wang, L and Wang, L and Wang, S and Wang, S and Li, W},
title = {{RSeQC: quality control of RNA-seq experiments}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {16},
pages = {2184--2185},
month = aug
}
@article{Park:2000tp,
author = {Park, JH and Na, SY and Lee, YJ and Cho, EW and Kim, KL},
title = {{Downregulation of MHC class II expression by oxidant-induced apoptosis in EBV-transformed B-cells}},
journal = {Molecules and Cells},
year = {2000},
volume = {10},
number = {6},
pages = {654--661}
}
@article{Roberts:2011hw,
author = {Roberts, Adam and Pimentel, Harold and Trapnell, Cole and Pachter, Lior},
title = {{Identification of novel transcripts in annotated genomes using RNA-Seq.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {17},
pages = {2325--2329},
month = sep
}
@article{Behringer:2006bq,
author = {Behringer, DC and Butler, MJ and Shields, JD},
title = {{Avoidance of disease by social lobsters}},
journal = {Nature},
year = {2006},
volume = {441},
number = {7092},
pages = {421--421}
}
@article{Cunningham:2000tc,
author = {Cunningham, MW},
title = {{Pathogenesis of group A streptococcal infections}},
journal = {Clinical Microbiology Reviews},
year = {2000},
volume = {13},
number = {3},
pages = {470--+}
}
@article{Saladin:2007dx,
author = {Saladin, Verena and Ritschard, Mathias and Roulin, Alexandre and Bize, Pierre and Richner, Heinz},
title = {{Analysis of genetic parentage in the tawny owl (Strix aluco) reveals extra-pair paternity is low}},
journal = {Journal of Ornithology},
year = {2006},
volume = {148},
number = {1},
pages = {113--116},
month = dec
}
@article{Cheviron:2011ep,
author = {Cheviron, Z A and Cheviron, Z A and Brumfield, R T},
title = {{Genomic insights into adaptation to high-altitude environments}},
journal = {Heredity},
year = {2011},
pages = {1--8},
month = sep
}
@article{Anonymous:5_uSQGYI,
title = {{Beyond black and white: divergent behaviour and performance in three rapidly evolving lizard species at White Sands}},
year = {2013},
pages = {1--14},
month = nov
}
@article{KrautBecher:2003uj,
author = {Kraut-Becher, Julie R and Kraut-Becher, Julie R and Aral, Sevgi O and Aral, Sevgi O},
title = {{Gap length: an important factor in sexually transmitted disease transmission.}},
journal = {Sexually Transmitted Diseases},
year = {2003},
volume = {30},
number = {3},
pages = {221--225},
month = mar
}
@article{ONeill:2010em,
author = {O'Neill, E M and Beard, K H},
title = {{Genetic Basis of a Color Pattern Polymorphism in the Coqui Frog Eleutherodactylus coqui}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {6},
pages = {703--709},
month = oct
}
@article{Lima:2008wy,
author = {Lima, Mauricio and Ernest, S K Morgan and Ernest, S K Morgan and Brown, James H and Belgrano, andrea and Belgrano, andrea and Stenseth, Nils Chr and Stenseth, Nils Chr},
title = {{Chihuahuan Desert kangaroo rats: Nonlinear effects of population dynamics, competition, and rainfall}},
journal = {Ecology},
year = {2008},
volume = {89},
number = {9},
pages = {2594--2603}
}
@article{Droege:2008js,
author = {Droege, Marcus and Hill, Brendon},
title = {{The genome sequencer FLX (TM) system-longer reads, more applications, straight forward bioinformatics and more complete data sets}},
journal = {Journal of Biotechnology},
year = {2008},
volume = {136},
number = {1-2},
pages = {3--10}
}
@article{Anonymous:2013ir,
author = {Robinson, S P and Simmons, L W},
title = {{Estimating relatedness and inbreeding using molecular markers and pedigrees: the effect of demographic history}},
journal = {Molecular {\ldots}},
year = {2013}
}
@article{Foley:2013jd,
author = {Foley, Erica A and Foley, Erica A and Khatchikian, Camilo E and Khatchikian, Camilo E and Hwang, Josephine and Hwang, Josephine and Ancca-Ju{\'a}rez, Jenny and Ancca-Ju{\'a}rez, Jenny and Borrini-Mayori, Katty and Borrini-Mayori, Katty and Qu{\i}spe-Machaca, Victor R and Qu{\i}spe-Machaca, Victor R and Levy, Michael Z and Levy, Michael Z and Brisson, Dustin and Brisson, Dustin and {The Chagas Disease Working Group in Arequipa} and {The Chagas Disease Working Group in Arequipa}},
title = {{Population structure of the Chagas disease vector, Triatoma infestans,at the urban-rural interface}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = jul
}
@article{Anisimova:2007iw,
author = {Anisimova, M and Yang, Z},
title = {{Multiple Hypothesis Testing to Detect Lineages under Positive Selection that Affects Only a Few Sites}},
journal = {Molecular Biology and Evolution},
year = {2007},
volume = {24},
number = {5},
pages = {1219--1228},
month = feb
}
@article{Liang:2013fm,
author = {Liang, Chao and Liang, Chao and Liu, Xuan and Yiu, Siu-Ming and Lim, Boon Leong and Lim, Boon Leong},
title = {{\textit{De novo} assembly and characterization of Camelina sativa transcriptome by paired-end sequencing}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {146}
}
@article{Charlesworth:2000vu,
author = {Charlesworth, B and CHARLESWORTH, D},
title = {{The degeneration of Y chromosomes}},
journal = {Philosophical Transactions of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {355},
number = {1403},
pages = {1563--1572}
}
@article{Browning:2012eu,
author = {Browning, L E and Browning, L E and Patrick, S C and Rollins, L A and Rollins, L A and Griffith, S C and Russell, A F},
title = {{Kin selection, not group augmentation, predicts helping in an obligate cooperatively breeding bird}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1743},
pages = {3861--3869},
month = aug
}
@article{Anonymous:2013cl,
title = {{Repeated elevational transitions in hemoglobin function during the evolution of andean hummingbirds.}},
journal = {PNAS},
year = {2013},
volume = {110},
number = {51},
pages = {20669--20674},
month = dec
}
@article{Yarza:2008eb,
author = {Yarza, Pablo and Richter, Michael and Peplies, J{\"o}rg and Euzeby, Jean and Amann, Rudolf and Schleifer, Karl-Heinz and Ludwig, Wolfgang and Gl{\"o}ckner, Frank Oliver and Rossell{\'o}-M{\'o}ra, Ramon},
title = {{The All-Species Living Tree project: A 16S rRNA-based phylogenetic tree of all sequenced type strains}},
journal = {Systematic and applied microbiology},
year = {2008},
volume = {31},
number = {4},
pages = {241--250},
month = sep
}
@article{Schmidt:2010cy,
author = {Schmidt, D and Wilson, M D and Ballester, B and Schwalie, P C and Brown, G D and Marshall, A and Kutter, C and Watt, S and Martinez-Jimenez, C P and Mackay, S and Talianidis, I and Flicek, P and Odom, D T},
title = {{Five-Vertebrate ChIP-seq Reveals the Evolutionary Dynamics of Transcription Factor Binding}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5981},
pages = {1036--1040},
month = may
}
@article{Johnsen:1998vx,
author = {Johnsen, A and andersson, S and Ornborg, J and Lifjeld, JT},
title = {{Ultraviolet plumage ornamentation affects social mate choice and sperm competition in bluethroats (Aves : Luscinia s. svecica): a field experiment}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1998},
volume = {265},
number = {1403},
pages = {1313--1318}
}
@book{Anonymous:2011vg,
editor = {Bafna, Vineet and Sahinalp, S Cenk},
title = {{Research in Computational Molecular Biology}},
publisher = {Springer Berlin Heidelberg},
year = {2011},
volume = {6577},
series = {Lecture Notes in Computer Science},
address = {Berlin, Heidelberg}
}
@article{Vandelli:2004db,
author = {Vandelli, Carmen and Renzo, Francesco and Romano, Luisa and Tisminetzky, Sergio and De Palma, Marisa and Stroffolini, Tommaso and Ventura, Ezio and Zanetti, Alessandro},
title = {{Lack of Evidence of Sexual Transmission of Hepatitis C among Monogamous Couples: Results of a 10-Year Prospective Follow-Up Study}},
journal = {The American Journal of Gastroenterology},
year = {2004},
volume = {99},
number = {5},
pages = {855--859},
month = may
}
@article{Wu:2011ed,
author = {Wu, Zhengpeng and Wu, Zhengpeng and Wang, Xi and Wang, Xi and Zhang, Xuegong and Zhang, Xuegong},
title = {{Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {4},
pages = {502--508}
}
@article{Hughes:2003ek,
author = {Hughes, J M and Mather, P B and Toon, A and Ma, J and Rowley, I and Russell, E},
title = {{High levels of extra-group paternity in a population of Australian magpies Gymnorhina tibicen: evidence from microsatellite analysis}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {12},
pages = {3441--3450},
month = dec
}
@article{Tennessen:2008dg,
author = {Tennessen, J A and Tennessen, J A and Blouin, M S and Blouin, M S},
title = {{Balancing Selection at a Frog Antimicrobial Peptide Locus: Fluctuating Immune Effector Alleles?}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {12},
pages = {2669--2680},
month = aug
}
@article{Cant:2000uy,
author = {Cant, Michael A},
title = {{Social control of reproduction in banded mongooses}},
journal = {Animal Behaviour},
year = {2000},
volume = {59},
number = {1},
pages = {147--158},
month = jan
}
@article{Yoshizawa:2012hg,
author = {Yoshizawa, Masato and Ashida, Go and Jeffery, William R},
title = {{PARENTAL GENETIC EFFECTS IN A CAVEFISH ADAPTIVE BEHAVIOR EXPLAIN DISPARITY BETWEEN NUCLEAR AND MITOCHONDRIAL DNA}},
journal = {Evolution},
year = {2012},
volume = {66},
number = {9},
pages = {2975--2982},
month = may
}
@article{Roberts:2013fu,
author = {Roberts, Adam and Schaeffer, Lorian and Pachter, Lior},
title = {{Updating RNA-Seq analyses after re-annotation.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
month = may
}
@article{Schoville:2012bx,
author = {Schoville, Sean D and Barreto, Felipe S and Barreto, Felipe S and Moy, Gary W and Moy, Gary W and Wolff, Anastasia and Wolff, Anastasia and Burton, Ronald S and Burton, Ronald S},
title = {{Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus \textit{californicus}}},
journal = {BMC Evolutionary Biology},
year = {2012},
volume = {12},
number = {1},
pages = {170}
}
@article{Drake:2004cy,
author = {Drake, G J C and Kennedy, L J and Auty, H K and Ryvar, R and Ollier, W E R and Kitchener, A C and Freeman, A R and Radford, A D},
title = {{The use of reference strand-mediated conformational analysis for the study of cheetah (Acinonyx jubatus) feline leucocyte antigen class II DRB polymorphisms}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {1},
pages = {221--229},
month = jan
}
@article{Shawkey:2009cd,
author = {Shawkey, Matthew D and Firestone, Mary K and Brodie, Eoin L and Beissinger, Steven R},
title = {{Avian Incubation Inhibits Growth and Diversification of Bacterial Assemblages on Eggs}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {2},
pages = {e4522},
month = feb
}
@article{Sedlazeck:2013eh,
author = {Sedlazeck, F J and Rescheneder, P and von Haeseler, A},
title = {{NextGenMap: fast and accurate read mapping in highly polymorphic genomes}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {21},
pages = {2790--2791},
month = oct
}
@article{Sloan:2009jr,
author = {Sloan, Chantel D and andrew, Angeline D and Duell, Eric J and Williams, Scott M and Karagas, Margaret R and Moore, Jason H},
title = {{Genetic Population Structure Analysis in New Hampshire Reveals Eastern European Ancestry}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e6928},
month = sep
}
@article{Coppe:2010he,
author = {Coppe, Alessandro and Pujolar, Jose and Maes, Gregory E and Larsen, Peter F and Hansen, Michael M and Bernatchez, Louis and Zane, Lorenzo and Bortoluzzi, Stefania},
title = {{Sequencing, \textit{de novo} annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {635}
}
@article{BessaGomes:2003ul,
author = {Bessa-Gomes, C and Clobert, J and Legendre, S},
title = {{Modeling mating patterns given mutual mate choice: The importance of individual mating preferences and mating system}},
journal = {{\ldots} of Biological Systems},
year = {2003}
}
@article{Rosvall:2008dk,
author = {Rosvall, Kimberly A},
title = {{Sexual selection on aggressiveness in females: evidence from an experimental test with tree swallows}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {5},
pages = {1603--1610},
month = may
}
@article{Anonymous:2009ty,
title = {{Transcriptional profiling of cattle infected with Trypanosoma congolense
highlights gene expression signatures underlying trypanotolerance and
trypanosusceptibility}},
journal = {BMC Genomics},
year = {2009},
pages = {1--52},
month = may
}
@article{Helgen:2009ub,
author = {Helgen, Kristofer M and Helgen, Kristofer M and Cole, F Russell and Cole, F Russell and Helgen, Lauren E and Helgen, Lauren E and Wilson, Don E and Wilson, Don E},
title = {{GENERIC REVISION IN THE HOLARCTIC GROUND SQUIRREL GENUS SPERMOPHILUS}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {2},
pages = {270--305}
}
@article{Nickolas:2008jp,
author = {Nickolas, Thomas L and Barasch, Jonathan and Devarajan, Prasad},
title = {{Biomarkers in acute and chronic kidney disease}},
journal = {Current opinion in nephrology and hypertension},
year = {2008},
volume = {17},
number = {2},
pages = {127--132},
month = mar
}
@article{Hugall:2012gk,
author = {Hugall, andrew F and Hugall, andrew F and Stuart-Fox, Devi and Stuart-Fox, Devi},
title = {{Accelerated speciation in colour-polymorphic birds}},
journal = {Nature},
year = {2012},
volume = {485},
number = {7400},
pages = {631--634},
month = may
}
@article{Reeve:2006cba,
author = {Reeve, H K},
title = {{A missing model in reproductive skew theory: The bordered tug-of-war}},
journal = {Proceedings of the National Academy of Sciences},
year = {2006},
volume = {103},
number = {22},
pages = {8430--8434},
month = may
}
@article{Hare:2008fg,
author = {Hare, Emily E and Peterson, Brant K and Iyer, Venky N and Meier, Rudolf and Eisen, Michael B},
title = {{Sepsid even-skipped Enhancers Are Functionally Conserved in \textit{Drosophila} Despite Lack of Sequence Conservation}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {6},
pages = {e1000106},
month = jun
}
@article{Barreto:2008gu,
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {18},
month = sep
}
@article{Ranz:2003gu,
author = {Ranz, J M},
title = {{Sex-Dependent Gene Expression and Evolution of the \textit{Drosophila} Transcriptome}},
journal = {Science (New York, NY)},
year = {2003},
volume = {300},
number = {5626},
pages = {1742--1745},
month = jun
}
@article{Rizk:2010bq,
author = {Rizk, G and Lavenier, D},
title = {{GASSST: global alignment short sequence search tool}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {20},
pages = {2534--2540},
month = oct
}
@article{Domingo:1996ua,
author = {Domingo, E and Escarmis, C and Sevilla, N and Moya, A and Elena, SF and Quer, J and Novella, IS and Holland, JJ},
title = {{Basic concepts in RNA virus evolution}},
journal = {Faseb Journal},
year = {1996},
volume = {10},
number = {8},
pages = {859--864}
}
@article{Eisenberg:1962ug,
author = {Eisenberg, John F},
title = {{Studies on the Behavior of \emph{\textit{Peromyscus} \textit{maniculatus} \textit{gambelii}} and \emph{\textit{Peromyscus} \textit{californicus} parasiticus}}},
journal = {Behaviour},
year = {1962},
volume = {19},
number = {3},
pages = {177--207},
month = jan
}
@article{Bird:js,
author = {Bird, Krista L and Bird, Krista L and Aldridge, Cameron L and Aldridge, Cameron L and Carpenter, Jennifer E and Carpenter, Jennifer E and Paszkowski, Cynthia A and Paszkowski, Cynthia A and Boyce, Mark S and Boyce, Mark S and Coltman, David W},
title = {{The secret sex lives of sage-grouse: multiple paternity and intraspecific nest parasitism revealed through genetic analysis}},
journal = {Behavioral Ecology},
year = {2012},
volume = {24},
pages = {29--38},
month = sep
}
@article{Kim:2008bh,
author = {Kim, T W and Christy, J H and Dennenmoser, S and Choe, J C},
title = {{The strength of a female mate preference increases with predation risk}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1657},
pages = {775--780},
month = feb
}
@article{Prosdocimi:2011ei,
author = {Prosdocimi, Francisco and Prosdocimi, Francisco and Bittencourt, Daniela and Bittencourt, Daniela and da Silva, Felipe Rodrigues and da Silva, Felipe Rodrigues and Kirst, Matias and Kirst, Matias and Motta, Paulo C and Motta, Paulo C and Rech, Elibio L and Rech, Elibio L},
title = {{Spinning gland transcriptomics from two main clades of spiders (order: araneae) - insights on their molecular, anatomical and behavioral evolution.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {6},
pages = {e21634}
}
@article{Blow:2009dv,
author = {Blow, Nathan},
title = {{Genomics: catch me if you can}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {7},
pages = {539--544},
month = jul
}
@article{Flanagan:2007ec,
author = {Flanagan, J L and Flanagan, J L and Brodie, E L and Weng, L and Weng, L and Lynch, S V and Lynch, S V and Garcia, O and Garcia, O and BROWN, R and Hugenholtz, P and DeSantis, T Z and andersen, G L and Wiener-Kronish, J P and Wiener-Kronish, J P and Bristow, J and Bristow, J},
title = {{Loss of bacterial diversity during antibiotic treatment of intubated patients colonized with Pseudomonas aeruginosa.}},
journal = {Journal of Clinical Microbiology},
year = {2007},
volume = {45},
number = {6},
pages = {1954--1962},
month = jun
}
@article{Oehmen:2013ce,
author = {Oehmen, C S and Baxter, D J},
title = {{ScalaBLAST 2.0: rapid and robust BLAST calculations on multiprocessor systems}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {6},
pages = {797--798},
month = mar
}
@article{Dickinson:2007jn,
author = {Dickinson, Hayley and Moritz, Karen and Wintour, E Marelyn and Walker, David W and Kett, Michelle M},
title = {{A comparative study of renal function in the desert-adapted spiny mouse and the laboratory-adapted C57BL/6 mouse: response to dietary salt load.}},
journal = {American Journal of Physiology-Renal Physiology},
year = {2007},
volume = {293},
number = {4},
pages = {F1093--8},
month = oct
}
@article{Beebee:2009cy,
author = {Beebee, T J C},
title = {{A comparison of single-sample effective size estimators using empirical toad (Bufo calamita) population data: genetic compensation and population size-genetic diversity correlations}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {23},
pages = {4790--4797}
}
@article{Schubert:2009fk,
author = {Schubert, Melanie and Schradin, Carsten and R{\"o}del, Heiko G and Pillay, Neville and Ribble, David O},
title = {{Male mate guarding in a socially monogamous mammal, the round-eared sengi: on costs and trade-offs}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {64},
number = {2},
pages = {257--264},
month = aug
}
@article{Searls:2009db,
author = {Searls, David B},
title = {{Ten Simple Rules for Choosing between Industry and Academia}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {6},
pages = {e1000388},
month = jun
}
@article{Anonymous:poouOkZh,
title = {{Assessing genomic DNA contamination of total RNA isolated from kidney cells obtained by Laser Capture Microdissection using the Agilent RNA 6000 Pico assay}},
year = {2004},
pages = {1--4},
month = jun
}
@article{Sousa:2011fu,
author = {Sousa, andre Gustavo P and Lopes, Neuza H and Hueb, Whady A and Krieger, Jose Eduardo and Pereira, Alexandre C},
title = {{Genetic Variants of Diabetes Risk and Incident Cardiovascular Events in Chronic Coronary Artery Disease}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {1},
pages = {e16341},
month = jan
}
@article{Gockel:2001uu,
author = {Gockel, J and Gockel, J and Ruf, T and Ruf, T},
title = {{Alternative seasonal reproductive strategies in wild rodent populations}},
journal = {Journal of Mammalogy},
year = {2001},
volume = {82},
number = {4},
pages = {1034--1046}
}
@article{Birkhead:1998td,
author = {Birkhead, TR},
title = {{Sperm competition in birds}},
journal = {Reviews of Reproduction},
year = {1998},
volume = {3},
number = {2},
pages = {123--129}
}
@article{Auer:2011bt,
author = {Auer, Paul L. and Auer, Paul L. and Doerge, Rebecca W. and Doerge, Rebecca W.},
title = {{A Two-Stage Poisson Model for Testing RNA-Seq Data}},
journal = {Statistical Applications in Genetics and Molecular Biology},
year = {2011},
volume = {10},
number = {1},
pages = {1--26}
}
@article{Westerman:2005dg,
author = {WESTERMAN, M E and Buonaccorsi, V P and STANNARD, J A and Galver, L and Taylor, C and Lynn, E A and Kimbrell, C A and Vetter, R D},
title = {{Cloning and characterization of novel microsatellite DNA markers for the grass rockfish, Sebastes rastrelliger, and cross-species amplification in 10 related Sebastes spp}},
journal = {Molecular Ecology Notes},
year = {2005},
volume = {5},
number = {1},
pages = {74--76},
month = mar
}
@article{Cant:2001tn,
author = {Cant, MA and Otali, E and Mwanguhya, F},
title = {{Eviction and dispersal in co-operatively breeding banded mongooses (Mungos mungo)}},
journal = {Journal of Zoology},
year = {2001},
volume = {254},
pages = {155--162}
}
@article{Pai:2011de,
author = {Pai, Athma A and Bell, Jordana T and Marioni, John C and Pritchard, Jonathan K and Gilad, Yoav},
title = {{A Genome-Wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {2},
pages = {e1001316},
month = feb
}
@article{Kimura:1974tl,
author = {Kimura, M and Ota, T},
title = {{On some principles governing molecular evolution.}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1974},
volume = {71},
number = {7},
pages = {2848--2852},
month = jul
}
@article{Tsutsui:2003gd,
author = {Tsutsui, Neil D and Kauppinen, Seth N and Oyafuso, Alain F and GROSBERG, RICHARD K},
title = {{The distribution and evolutionary history of Wolbachia infection in native and introduced populations of the invasive argentine ant (Linepithema humile)}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {11},
pages = {3057--3068},
month = oct
}
@article{Lovell:2008jz,
author = {Lovell, Peter V. and Lovell, Peter V. and Clayton, David F and Clayton, David F and Replogle, Kirstin L. and Replogle, Kirstin L. and Mello, Claudio V. and Mello, Claudio V.},
title = {{Birdsong "Transcriptomics": Neurochemical Specializations of the Oscine Song System}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {10},
pages = {e3440}
}
@article{Abbott:2006je,
journal = {Journal of Zoology},
year = {2006},
volume = {270},
number = {4},
month = dec
}
@article{Wang:2011hc,
author = {Wang, Y and Wang, Y and Liu, W and Liu, W and Wang, G M and Wang, G M and Zhong, W and Zhong, W and Wan, X and Wan, X},
title = {{Genetic Consequences of Group Living in Mongolian Gerbils}},
journal = {Journal of Heredity},
year = {2011},
volume = {102},
number = {5},
pages = {554--561},
month = aug
}
@article{MAY:1996vo,
author = {MAY, CA and Jeffreys, AJ and Armour, JAL},
title = {{Mutation rate heterogeneity and the generation of allele diversity at the human minisatellite MS205 (D16S309)}},
journal = {Human Molecular Genetics},
year = {1996},
volume = {5},
number = {11},
pages = {1823--1833}
}
@article{Ramsden:2011cn,
author = {Ramsden, Sue and Ramsden, Sue and Richardson, Fiona M and Richardson, Fiona M and Josse, Goulven and Josse, Goulven and Thomas, Michael S C and Thomas, Michael S C and Ellis, Caroline and Ellis, Caroline and Shakeshaft, Clare and Shakeshaft, Clare and Seghier, Mohamed L and Seghier, Mohamed L and Price, Cathy J and Price, Cathy J},
title = {{Verbal and non-verbal intelligence changes in the teenage brain}},
journal = {Nature},
year = {2011},
volume = {479},
number = {7371},
pages = {113--116},
month = oct
}
@article{Bukovetzky:2012ig,
author = {Bukovetzky, Elena and Bukovetzky, Elena and Fares, Fuad and Fares, Fuad and Schwimmer, Hagit and Schwimmer, Hagit and Haim, Abraham},
title = {{Reproductive and metabolic responses of desert adapted common spiny male mice (Acomys cahirinus) to vasopressin treatment}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2012},
volume = {162},
number = {4},
pages = {349--356},
month = aug
}
@article{Castelli:2011fw,
author = {Castelli, Frank R and Castelli, Frank R and Kelley, Rebecca A and Kelley, Rebecca A and Keane, Brian and Solomon, Nancy G},
title = {{Female prairie voles show social and sexual preferences for males with longer avpr1a microsatellite alleles}},
journal = {Animal Behaviour},
year = {2011},
pages = {1--10},
month = sep
}
@article{Drea:2005uo,
author = {Drea, CM},
title = {{Bateman revisited: The reproductive tactics of female primates}},
journal = {Integrative and Comparative Biology},
year = {2005},
volume = {45},
number = {5},
pages = {915--923}
}
@article{Totsune:1994kf,
author = {Totsune, K and Takahashi, K and Murakami, O and Satoh, F and Sone, M and Saito, T and Sasano, H and Mouri, T and Abe, K},
title = {{Natriuretic peptides in the human kidney}},
journal = {Hypertension},
year = {1994},
volume = {24},
number = {6},
pages = {758--762},
month = dec
}
@article{Morgan:2008hw,
author = {Morgan, Daniel K and Whitelaw, Emma},
title = {{The case for transgenerational epigenetic inheritance in humans}},
journal = {Mammalian Genome},
year = {2008},
volume = {19},
number = {6},
pages = {394--397},
month = jul
}
@article{Edwards:2009cy,
author = {Edwards, A W F},
title = {{Statistical Methods for Evolutionary Trees}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {1},
pages = {5--12},
month = sep
}
@article{Cesarini:2009jt,
author = {Cesarini, D and Lindqvist, E and Wallace, B},
title = {{Is there an adverse effect of sons on maternal longevity?}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1664},
pages = {2081--2084},
month = apr
}
@article{Wong:2010kt,
author = {Wong, A K and Ruhe, A L and Dumont, B L and Robertson, K R and Guerrero, G and Shull, S M and Ziegle, J S and Millon, L V and Broman, K W and Payseur, B A and Neff, M W},
title = {{A Comprehensive Linkage Map of the Dog Genome}},
journal = {Genetics},
year = {2010},
volume = {184},
number = {2},
pages = {595--605},
month = jan
}
@article{Thompson:2014fs,
author = {Thompson, M J and Jiggins, C D},
title = {{Supergenes and their role in evolution}},
year = {2014},
volume = {113},
number = {1},
pages = {1--8},
month = mar
}
@article{Fang:2010el,
author = {Fang, Gang and Bhardwaj, Nitin and Robilotto, Rebecca and Gerstein, Mark B},
title = {{Getting Started in Gene Orthology and Functional Analysis}},
journal = {PLOS Computational Biology},
year = {2010},
volume = {6},
number = {3},
pages = {e1000703},
month = mar
}
@article{Sigg:2006uw,
author = {Sigg, DP and Goldizen, A W},
title = {{Male reproductive tactics and female choice in the solitary, promiscuous bridled nailtail wallaby (Onychogalea fraenata)}},
journal = {Journal of Mammalogy},
year = {2006},
volume = {87},
number = {3},
pages = {461--469}
}
@article{Kutsukake:2006gs,
author = {Kutsukake, Nobuyuki and Nunn, Charles L},
title = {{Comparative tests of reproductive skew in male primates: the roles of demographic factors and incomplete control}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {60},
number = {5},
pages = {695--706},
month = aug
}
@article{Xu:2012bd,
author = {Xu, Xiaohong and Xu, Xiaohong and Coats, Jennifer K and Coats, Jennifer K and Yang, Cindy F and Yang, Cindy F and Wang, Amy and Wang, Amy and Ahmed, Osama M and Ahmed, Osama M and Alvarado, Maricruz and Alvarado, Maricruz and Izumi, Tetsuro and Izumi, Tetsuro and Shah, Nirao M and Shah, Nirao M},
title = {{Modular Genetic Control of Sexually Dimorphic Behaviors}},
journal = {Cell},
year = {2012},
volume = {148},
number = {3},
pages = {596--607},
month = feb
}
@article{Ashley:2009jm,
author = {Ashley, M V and Caballero, I C and Chaovalitwongse, W and Dasgupta, B and Govindan, P and Sheikh, S I and Berger-Wolf, T Y},
title = {{KINALYZER, a computer program for reconstructing sibling groups}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {4},
pages = {1127--1131},
month = jul
}
@article{vanGossum:2008hd,
author = {Mattern, Michelle and van Gossum, Hans},
title = {{A phylogenetic perspective on absence and presence of a sex-limited polymorphism}},
journal = {Animal Biology},
year = {2008},
volume = {58},
number = {2},
pages = {257--273},
month = apr
}
@article{Ma:2013dq,
author = {Ma, J and Flemr, M and Strnad, H and Svoboda, P and Schultz, R M},
title = {{Maternally Recruited DCP1A and DCP2 Contribute to Messenger RNA Degradation During Oocyte Maturation and Genome Activation in Mouse}},
journal = {Biology of Reproduction},
year = {2013},
volume = {88},
number = {1},
pages = {11--11},
month = jan
}
@article{deDreu:2010gq,
author = {De Dreu, C K W and Greer, L L and Handgraaf, M J J and Shalvi, S and Van Kleef, G A and Baas, M and Ten Velden, F S and Van Dijk, E and Feith, S W W},
title = {{The Neuropeptide Oxytocin Regulates Parochial Altruism in Intergroup Conflict Among Humans}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5984},
pages = {1408--1411},
month = jun
}
@article{Evans:2008ca,
author = {Evans, Jonathan P and Brooks, Robert C and Zajitschek, Susanne R K and Griffith, Simon C},
title = {{DOES GENETIC RELATEDNESS OF MATES INFLUENCE COMPETITIVE FERTILIZATION SUCCESS IN GUPPIES?}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {11},
pages = {2929--2935},
month = nov
}
@article{Rosen:2014fr,
author = {Rosen, Christian B and Rodriguez-Larrea, David and Bayley, Hagan},
title = {{Brief communications}},
journal = {Nature Biotechnology},
year = {2014},
volume = {32},
number = {2},
pages = {179--181},
month = jan
}
@article{Cant:2002vd,
author = {Cant, MA and Otali, E and Mwanguhya, F},
title = {{Fighting and mating between groups in a cooperatively breeding mammal, the banded mongoose}},
journal = {Ethology},
year = {2002},
volume = {108},
number = {6},
pages = {541--555}
}
@article{Xie:2011kf,
author = {Xie, Wei and Xie, Wei and Wang, Fengping and Wang, Fengping and Guo, Lei and Chen, Zeling and Chen, Zeling and Sievert, Stefan M and Sievert, Stefan M and Meng, Jun and Meng, Jun and Huang, Guangrui and Huang, Guangrui and Li, Yuxin and Li, Yuxin and Yan, Qingyu and Yan, Qingyu and Wu, Shan and Wu, Shan and Wang, Xin and Wang, Xin and Chen, Shangwu and He, Guangyuan and He, Guangyuan and Xiao, Xiang and Xiao, Xiang and Xu, Anlong},
title = {{Comparative metagenomics of microbial communities inhabiting deep-sea hydrothermal vent chimneys with contrasting chemistries.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {3},
pages = {414--426},
month = mar
}
@article{Magrath:2000tu,
author = {Magrath, RD and Heinsohn, RG},
title = {{Reproductive skew in birds: models, problems ann prospects}},
journal = {Journal of Avian Biology},
year = {2000},
volume = {31},
number = {2},
pages = {247--258}
}
@article{Camacho:2009fca,
author = {Camacho, Christiam and Coulouris, George and Avagyan, Vahram and Ma, Ning and Papadopoulos, Jason and Bealer, Kevin and Madden, Thomas L},
title = {{BLAST+: architecture and applications}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {421}
}
@article{MrBayes:wr,
author = {Ronquist, F and Huelsenbeck, JP and van Der Mark, P},
title = {{Mr Bayes}}
}
@article{Shi:2009il,
author = {Shi, Jianxin and Levinson, Douglas F and Duan, Jubao and Sanders, Alan R and Zheng, Yonglan and Pe'er, Itsik and Dudbridge, Frank and Holmans, Peter A and Whittemore, Alice S and Mowry, Bryan J and Olincy, Ann and Amin, Farooq and Cloninger, C Robert and Silverman, Jeremy M and Buccola, Nancy G and Byerley, William F and Black, Donald W and Crowe, Raymond R and Oksenberg, Jorge R and Mirel, Daniel B and Kendler, Kenneth S and Freedman, Robert and Gejman, Pablo V},
title = {{Common variants on chromosome 6p22.1 are associated with schizophrenia}},
journal = {Nature},
year = {2009},
month = jul
}
@article{Carr:2009bta,
author = {Carr, I M and Robinson, J I and Dimitriou, R and Markham, A F and Morgan, A W and Bonthron, D T},
title = {{Inferring relative proportions of DNA variants from sequencing electropherograms}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {24},
pages = {3244--3250},
month = dec
}
@article{PhiferRixey:2014fl,
title = {{Genome-Wide Patterns of Differentiation Among House Mouse Subspecies.}},
journal = {Genetics},
year = {2014},
pages = {genetics.114.166827},
month = jul
}
@article{Sommer:2003dz,
author = {Sommer, S},
title = {{Effects of habitat fragmentation and changes of dispersal behaviour after a recent population decline on the genetic variability of noncoding and coding DNA of a monogamous Malagasy rodent}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {10},
pages = {2845--2851},
month = oct
}
@article{Choe:2009dr,
author = {Choe, D H and Millar, J G and Rust, M K},
title = {{Chemical signals associated with life inhibit necrophoresis in Argentine ants}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {20},
pages = {8251--8255},
month = may
}
@article{Carlisle:2000ux,
author = {Carlisle, AJ and Prabhu, VV and Elkahloun, A and Hudson, J and Trent, JM and Linehan, WM and Williams, ED and Emmert-Buck, MR and Liotta, LA and Munson, PJ and Krizman, DB},
title = {{Development of a prostate cDNA microarray and statistical gene expression analysis package}},
journal = {Molecular Carcinogenesis},
year = {2000},
volume = {28},
number = {1},
pages = {12--22}
}
@article{Trick:2009ks,
author = {Trick, Martin and Long, Yan and Meng, Jinling and Bancroft, Ian},
title = {{Single nucleotide polymorphism (SNP) discovery in the polyploid Brassica napususing Solexa transcriptome sequencing}},
journal = {Plant Biotechnology Journal},
year = {2009},
volume = {7},
number = {4},
pages = {334--346},
month = may
}
@article{Poirier:2004fw,
author = {Poirier, Nicole E and Whittingham, Linda A and Dunn, Peter O},
title = {{Males achieve greater reproductive success through multiple broods than through extrapair mating in house wrens}},
journal = {Animal Behaviour},
year = {2004},
volume = {67},
number = {6},
pages = {1109--1116},
month = jun
}
@article{Dermitzakis:2009kc,
author = {Dermitzakis, E T and Clark, A G},
title = {{Life After GWA Studies}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5950},
pages = {239--240},
month = oct
}
@article{Park:2009gl,
author = {Park, Peter J},
title = {{ChIP{\textendash}seq: advantages and challenges of a maturing technology}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {10},
pages = {669--680},
month = sep
}
@article{Sharma:2012ew,
author = {Sharma, Reeta and Sharma, Reeta and Goossens, Benoit and Goossens, Benoit and Kun-Rodrigues, C{\'e}lia and Kun-Rodrigues, C{\'e}lia and Teixeira, Tatiana and Teixeira, Tatiana and Othman, Nurzhafarina and Othman, Nurzhafarina and Boone, Jason Q and Boone, Jason Q and Jue, Nathaniel K and Jue, Nathaniel K and Obergfell, Craig and Obergfell, Craig and O'Neill, Rachel J and Chikhi, Loun{\`e}s and Chikhi, Loun{\`e}s},
title = {{Two Different High Throughput Sequencing Approaches Identify Thousands of De Novo Genomic Markers for the Genetically Depleted Bornean Elephant}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {11},
pages = {e49533},
month = nov
}
@article{Boothroyd:2008du,
author = {Boothroyd, Lynda G and Jones, Benedict C and Burt, D Michael and DeBruine, Lisa M and Perrett, David I},
title = {{Facial correlates of sociosexuality}},
journal = {Evolution and Human Behavior},
year = {2008},
volume = {29},
number = {3},
pages = {211--218},
month = may
}
@article{Gorlov:2006ff,
author = {Gorlov, I P},
title = {{Strength of the purifying selection against different categories of the point mutations in the coding regions of the human genome}},
journal = {Human Molecular Genetics},
year = {2006},
volume = {15},
number = {7},
pages = {1143--1150},
month = feb
}
@article{Jallow:2009dy,
author = {Jallow, Muminatou and Teo, Yik Ying and Small, Kerrin S and Rockett, Kirk A and Deloukas, Panos and Clark, Taane G and Kivinen, Katja and Bojang, Kalifa A and Conway, David J and Pinder, Margaret and Sirugo, Giorgio and Sisay-Joof, Fatou and Usen, Stanley and Auburn, Sarah and Bumpstead, Suzannah J and Campino, Susana and Coffey, Alison and Dunham, andrew and Fry, andrew E and Green, Angela and Gwilliam, Rhian and Hunt, Sarah E and Inouye, Michael and Jeffreys, Anna E and Mendy, Alieu and Palotie, Aarno and Potter, Simon and Ragoussis, Jiannis and Rogers, Jane and Rowlands, Kate and Somaskantharajah, Elilan and Whittaker, Pamela and Widden, Claire and Donnelly, Peter and Howie, Bryan and Marchini, Jonathan and Morris, andrew and SanJoaquin, Miguel and Achidi, Eric Akum and Agbenyega, Tsiri and Allen, Angela and Amodu, Olukemi and Corran, Patrick and Djimde, Abdoulaye and Dolo, Amagana and Doumbo, Ogobara K and Drakeley, Chris and Dunstan, Sarah and Evans, Jennifer and Farrar, Jeremy and Fernando, Deepika and Hien, Tran Tinh and Horstmann, Rolf D and Ibrahim, Muntaser and Karunaweera, Nadira and Kokwaro, Gilbert and Koram, Kwadwo A and Lemnge, Martha and Makani, Julie and Marsh, Kevin and Michon, Pascal and Modiano, David and Molyneux, Malcolm E and Mueller, Ivo and Parker, Michael and Peshu, Norbert and Plowe, Christopher V and Puijalon, Odile and Reeder, John and Reyburn, Hugh and Riley, Eleanor M and Sakuntabhai, Anavaj and Singhasivanon, Pratap and Sirima, Sodiomon and Tall, Adama and Taylor, Terrie E and Thera, Mahamadou and Troye-Blomberg, Marita and Williams, Thomas N and Wilson, Michael and Kwiatkowski, Dominic P},
title = {{Genome-wide and fine-resolution association analysis of malaria in West Africa}},
journal = {Nature Genetics},
year = {2009},
volume = {41},
number = {6},
pages = {657--665},
month = may
}
@article{Consuegra:2008im,
author = {Consuegra, S and Garcia de Leaniz, C},
title = {{MHC-mediated mate choice increases parasite resistance in salmon}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1641},
pages = {1397--1403},
month = jun
}
@article{FreemanGallant:2005tz,
author = {Freeman-Gallant, CR and Wheelwright, NT and Meiklejohn, KE and States, SL and Sollecito, SV},
title = {{Little effect of extrapair paternity on the opportunity for sexual selection in savannah sparrows (Passerculus sandwichensis)}},
journal = {Evolution},
year = {2005},
volume = {59},
number = {2},
pages = {422--430}
}
@article{KrugnerHigby:2006wr,
author = {Krugner-Higby, Lisa and Shelness, Gregory S and Holler, Allyson},
title = {{Heritable, diet-induced hyperlipidemia in California mice (\textit{Peromyscus} \textit{californicus}) is due to increased hepatic secretion of very low density lipoprotein triacylglycerol}},
journal = {Comparative Medicine},
year = {2006},
volume = {56},
number = {6},
pages = {468--475}
}
@article{FREDERICK:1987wa,
author = {FREDERICK, PC and FREDERICK, PC},
title = {{EXTRAPAIR COPULATIONS IN THE MATING SYSTEM OF WHITE IBIS (EUDOCIMUS-ALBUS)}},
journal = {Behaviour},
year = {1987},
volume = {100},
pages = {170--201}
}
@article{PerezPortela:2013hj,
author = {P{\'e}rez-Portela, Roc{\'\i}o and Riesgo, Ana},
title = {{Optimizing preservation protocols to extract high-quality RNA from different tissues of echinoderms for next-generation sequencing.}},
journal = {Molecular Ecology Resources},
year = {2013},
volume = {13},
number = {5},
pages = {884--889},
month = sep
}
@article{Johnson:2013ds,
author = {Johnson, B E and Mazor, T and Hong, C and Barnes, M and Aihara, K and McLean, C Y and Fouse, S D and Yamamoto, S and Ueda, H and Tatsuno, K and Asthana, S and Jalbert, L E and Nelson, S J and Bollen, A W and Gustafson, W C and Charron, E and Weiss, W A and Smirnov, I V and Song, J S and Olshen, A B and Cha, S and Zhao, Y and Moore, R A and Mungall, A J and Jones, S J M and Hirst, M and Marra, M A and Saito, N and Aburatani, H and Mukasa, A and Berger, M S and Chang, S M and Taylor, B S and Costello, J F},
title = {{Mutational Analysis Reveals the Origin and Therapy-Driven Evolution of Recurrent Glioma}},
journal = {Science (New York, NY)},
year = {2013},
month = dec
}
@article{Aerts:2009bi,
author = {Aerts, Jan and Law, andy},
title = {{An introduction to scripting in Ruby for biologists}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {221}
}
@article{Williams:2007hi,
author = {Williams, J W and Jackson, S T and Kutzbach, J E},
title = {{Projected distributions of novel and disappearing climates by 2100 AD}},
journal = {Proceedings of the National Academy of Sciences},
year = {2007},
volume = {104},
number = {14},
pages = {5738--5742},
month = apr
}
@article{Gopurenko:2007gn,
author = {Gopurenko, David and Williams, Rod N and Dewoody, James andrew},
title = {{Reproductive and Mating Success in the Small-Mouthed Salamander (Ambystoma texanum) Estimated via Microsatellite Parentage Analysis}},
journal = {Evolutionary Biology},
year = {2007},
volume = {34},
number = {3-4},
pages = {130--139},
month = aug
}
@article{Liu:2012hr,
author = {Liu, Mingying and Liu, Mingying and Qiao, Guirong and Qiao, Guirong and Jiang, Jing and Jiang, Jing and Yang, Huiqin and Yang, Huiqin and Xie, Lihua and Xie, Lihua and Xie, Jinzhong and Xie, Jinzhong and Zhuo, Renying and Zhuo, Renying},
title = {{Transcriptome Sequencing and De Novo Analysis for Ma Bamboo (Dendrocalamus latiflorus Munro) Using the Illumina Platform}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {10},
pages = {e46766},
month = oct
}
@article{Quail:2008jja,
author = {Quail, Michael A and Kozarewa, Iwanka and Smith, Frances and Scally, Aylwyn and Stephens, Philip J and Durbin, Richard and Swerdlow, Harold and Turner, Daniel J},
title = {{A large genome center's improvements to the Illumina sequencing system}},
journal = {Nature Methods},
year = {2008},
volume = {5},
number = {12},
pages = {1005--1010},
month = dec
}
@article{Bromham:2005vj,
author = {Bromham, L and Leys, R},
title = {{Sociality and the rate of molecular evolution}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {22},
number = {6},
pages = {1393--1402}
}
@article{Bell:2009dfa,
author = {Bell, M and Granath, F and Martensson, J and Lofberg, E and Ekbom, A and Martling, C R and {of KING (Karolinska Intensive care Nephrology Group)}},
title = {{Cystatin C is correlated with mortality in patients with and without acute kidney injury}},
journal = {Nephrology Dialysis Transplantation},
year = {2009},
volume = {24},
number = {10},
pages = {3096--3102},
month = sep
}
@article{Prokop:2012dd,
author = {Prokop, Pavol and Rantala, Markus J and Usak, Muhammet and Senay, Ibrahim},
title = {{Is a Woman{\textquoteright}s Preference for Chest Hair in Men Influenced by Parasite Threat?}},
journal = {Archives of Sexual Behavior},
year = {2012},
volume = {42},
number = {7},
pages = {1181--1189},
month = sep
}
@article{Drummond:2007gs,
author = {Drummond, Alexei J and Rambaut, andrew},
title = {{BEAST: Bayesian evolutionary analysis by sampling trees}},
journal = {BMC Evolutionary Biology},
year = {2007},
volume = {7},
number = {1},
pages = {214}
}
@article{Leggett:2013bq,
author = {Leggett, Richard M},
title = {{Sequencing quality assessment tools to enable data-driveninformatics for high throughput genomics}},
year = {2013},
pages = {1--5},
month = dec
}
@article{Dethlefsen:2008gp,
author = {Dethlefsen, Les and Huse, Sue and Sogin, Mitchell L and Relman, David A},
title = {{The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing}},
journal = {PLOS Biology},
year = {2008},
volume = {6},
number = {11},
pages = {e280}
}
@article{EBERHARD:1995wa,
author = {EBERHARD, WG and CORDERO, C},
title = {{SEXUAL SELECTION BY CRYPTIC FEMALE CHOICE ON MALE SEMINAL PRODUCTS - A NEW BRIDGE BETWEEN SEXUAL SELECTION AND REPRODUCTIVE PHYSIOLOGY}},
journal = {Trends In Ecology {\&} Evolution},
year = {1995},
volume = {10},
number = {12},
pages = {493--496}
}
@article{Lacy:2013fb,
author = {Lacy, Robert C and Lacy, Robert C and Alaks, Glen and Alaks, Glen and Walsh, Allison and Walsh, Allison},
title = {{Evolution of \textit{Peromyscus} leucopus Mice in Response to a Captive Environment}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {8},
pages = {e72452},
month = aug
}
@article{Evans:2009gl,
author = {Evans, Melissa L and Neff, Bryan D},
title = {{Major histocompatibility complex heterozygote advantage and widespread bacterial infections in populations of Chinook salmon ( Oncorhynchus tshawytscha)}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {22},
pages = {4716--4729},
month = nov
}
@article{Anzai:2003ei,
author = {Anzai, T},
title = {{Comparative sequencing of human and chimpanzee MHC class I regions unveils insertions/deletions as the major path to genomic divergence}},
journal = {Proceedings of the National Academy of Sciences},
year = {2003},
volume = {100},
number = {13},
pages = {7708--7713},
month = jun
}
@article{Ronen:2013cm,
author = {Ronen, R and Udpa, N and Halperin, E and Bafna, V},
title = {{Learning natural selection from the site frequency spectrum}},
journal = {Genetics},
year = {2013}
}
@article{Valera:2003uy,
author = {Valera, F and Hoi, H and Kristin, A},
title = {{Male shrikes punish unfaithful females}},
journal = {Behavioral Ecology},
year = {2003},
volume = {14},
number = {3},
pages = {403--408}
}
@article{Courtiol:2010il,
author = {Courtiol, Alexandre and Raymond, Michel and Godelle, Bernard and Ferdy, Jean-Baptiste},
title = {{MATE CHOICE AND HUMAN STATURE: HOMOGAMY AS A UNIFIED FRAMEWORK FOR UNDERSTANDING MATING PREFERENCES}},
journal = {Evolution},
year = {2010},
month = apr
}
@article{Richardson:2002ue,
author = {Richardson, DS and Burke, T and Komdeur, J},
title = {{Direct benefits and the evolution of female-biased cooperative breeding in Seychelles warblers}},
journal = {Evolution},
year = {2002},
volume = {56},
number = {11},
pages = {2313--2321}
}
@article{Pillai:2009kw,
author = {Pillai, Sreekumar G and Ge, Dongliang and Zhu, Guohua and Kong, Xiangyang and Shianna, Kevin V and Need, Anna C and Feng, Sheng and Hersh, Craig P and Bakke, Per and Gulsvik, Amund and Ruppert, andreas and L{\o}drup Carlsen, Karin C and Roses, Allen and anderson, Wayne and {ICGN Investigators} and Rennard, Stephen I and Lomas, David A and Silverman, Edwin K and Goldstein, David B},
title = {{A Genome-Wide Association Study in Chronic Obstructive Pulmonary Disease (COPD): Identification of Two Major Susceptibility Loci}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {3},
pages = {e1000421},
month = mar
}
@article{Hohmann:2003vy,
author = {Hohmann, G and Hohmann, G and Fruth, B and Fruth, B},
title = {{Intra- and inter-sexual aggression by bonobos in the context of mating}},
journal = {Behaviour},
year = {2003},
volume = {140},
pages = {1389--1413}
}
@article{Siddiqui:2005gg,
author = {Siddiqui, A S},
title = {{A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells}},
journal = {Proceedings of the National Academy of Sciences},
year = {2005},
volume = {102},
number = {51},
pages = {18485--18490},
month = dec
}
@article{Parada:2011eua,
author = {Parada, andres and D'El{\'\i}a, Guillermo and Bidau, Claudio J and Lessa, Enrique P},
title = {{Species groups and the evolutionary diversification of tuco-tucos, genus \textit{Ctenomys} (Rodentia: Ctenomyidae)}},
journal = {dx.doi.org},
year = {2011},
volume = {92},
number = {3},
pages = {671--682},
month = jun
}
@article{LaPrade:1982wm,
author = {LaPrade, HR},
title = {{Polygyny and Female-Female Aggression in Red-Winged Blackbirds (\textit{Agelaius phoeniceus})}},
journal = {The American Naturalist},
year = {1982},
volume = {120},
number = {1},
pages = {135--138}
}
@article{Stockley:1994wa,
author = {Stockley, P and Searle, JB and Macdonald, DW and Jones, CS},
title = {{ALTERNATIVE REPRODUCTIVE TACTICS IN MALE COMMON SHREWS - RELATIONSHIPS BETWEEN MATE-SEARCHING BEHAVIOR, SPERM PRODUCTION, AND REPRODUCTIVE SUCCESS AS REVEALED BY DNA-FINGERPRINTING}},
journal = {Behavioral Ecology and Sociobiology},
year = {1994},
volume = {34},
number = {1},
pages = {71--78}
}
@article{Siepel:2006ub,
author = {Siepel, Adam and Pollard, Katherine S and Haussler, David},
title = {{New methods for detecting lineage-specific selection}},
journal = {Research In Computational Molecular Biology, Proceedings},
year = {2006},
volume = {3909},
pages = {190--205}
}
@article{Gilbert:2009vt,
author = {Gilbert, M T P and Gilbert, M T P and Poinar, H and Poinar, H and Fiedel, S and Fiedel, S and King, C and King, C and Devault, A and Devault, A and Bos, K and Bos, K and Kuch, M and Kuch, M and Debruyne, R and Debruyne, R},
title = {{DNA from pre-Clovis human coprolites in Oregon, North America (320, pg 786, 2008)}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5937},
pages = {148--148}
}
@article{Stephan:2010hj,
author = {Stephan, Wolfgang},
title = {{Detecting strong positive selection in the genome}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {5},
pages = {863--872},
month = aug
}
@article{Marra:2012ec,
author = {Marra, Nicholas J and Eo, Soo Hyung and Eo, Soo Hyung and Hale, Matthew C and Waser, Peter M and Dewoody, J andrew},
title = {{A priori and a posteriori approaches for finding genes of evolutionary interest in non-model species: Osmoregulatory genes in the kidney transcriptome of the desert rodent \textit{Dipodomys} spectabilis (banner-tailed kangaroo rat)}},
journal = {Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics},
year = {2012},
pages = {1--12},
month = jul
}
@article{Findlay:2010ej,
author = {Findlay, Geoffrey D and Swanson, Willie J},
title = {{Proteomics enhances evolutionary and functional analysis of reproductive proteins}},
journal = {Bioessays},
year = {2010},
volume = {32},
number = {1},
pages = {26--36}
}
@article{Froeschke:2012ke,
author = {Froeschke, Gotz and Sommer, Simone},
title = {{Insights into the Complex Associations Between MHC Class II DRB Polymorphism and Multiple Gastrointestinal Parasite Infestations in the Striped Mouse}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e31820},
month = feb,
annote = {Test}
}
@article{Vitalis:2013ja,
author = {Vitalis, R and Gautier, M and Dawson, K J and Beaumont, M A},
title = {{Detecting and Measuring Selection from Gene Frequency Data}},
journal = {Genetics},
year = {2013},
month = dec
}
@article{Gracey:2004up,
author = {Gracey, AY and Fraser, EJ and Li, WZ and Fang, YX and Taylor, RR and Rogers, J and Brass, A and Cossins, AR},
title = {{Coping with cold: An integrative, multitissue analysis of the transcriptome of a poikilothermic vertebrate}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2004},
volume = {101},
number = {48},
pages = {16970--16975}
}
@article{Penn:1999vt,
author = {Penn, Dustin J and Potts, Wayne K},
title = {{The evolution of mating preferences and major histocompatibility complex genes}},
journal = {The American Naturalist},
year = {1999},
volume = {153},
number = {2},
pages = {145--164}
}
@article{Cipollini:1997tt,
author = {Cipollini, ML and Levey, DJ},
title = {{Antifungal activity of Solanum fruit glycoalkaloids: Implications for frugivory and seed dispersal}},
journal = {Ecology},
year = {1997},
volume = {78},
number = {3},
pages = {799--809}
}
@article{Ji:2009ic,
author = {Ji, Yanping and Zhang, Zhen and Hu, Yinghe},
title = {{The repertoire of G-protein-coupled receptors in Xenopus tropicalis}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {263}
}
@article{Clark:2007gf,
author = {Clark, andrew G and Eisen, Michael B and Smith, Douglas R and Bergman, Casey M and Oliver, Brian and Markow, Therese A and Kaufman, Thomas C and Kellis, Manolis and Gelbart, William and Iyer, Venky N and Pollard, Daniel A and Sackton, Timothy B and Larracuente, Amanda M and Singh, Nadia D and Abad, Jose P and Abt, Dawn N and Adryan, Boris and Aguad{\'e}, Montserrat and Akashi, Hiroshi and anderson, Wyatt W and Aquadro, Charles F and Ardell, David H and Arguello, Roman and Artieri, Carlo G and Barbash, Daniel A and Barker, Daniel and Barsanti, Paolo and Batterham, Phil and Batzoglou, Serafim and Begun, Dave and Bhutkar, Arjun and Blanco, Enrico and Bosak, Stephanie A and Bradley, Robert K and Brand, Adrianne D and Brent, Michael R and Brooks, Angela N and Brown, Randall H and Butlin, Roger K and Caggese, Corrado and Calvi, Brian R and Bernardo de Carvalho, A and Caspi, Anat and Castrezana, Sergio and Celniker, Susan E and Chang, Jean L and Chapple, Charles and Chatterji, Sourav and Chinwalla, Asif and Civetta, Alberto and Clifton, Sandra W and Comeron, Josep M and Costello, James C and Coyne, Jerry A and Daub, Jennifer and David, Robert G and Delcher, Arthur L and Delehaunty, Kim and Do, Chuong B and Ebling, Heather and Edwards, Kevin and Eickbush, Thomas and Evans, Jay D and Filipski, Alan and Findeiss, Sven and Freyhult, Eva and Fulton, Lucinda and Fulton, Robert and Garcia, Ana C L and Gardiner, Anastasia and Garfield, David A and Garvin, Barry E and Gibson, Greg and Gilbert, Don and Gnerre, Sante and Godfrey, Jennifer and Good, Robert and Gotea, Valer and Gravely, Brenton and Greenberg, Anthony J and Griffiths-Jones, Sam and Gross, Samuel and Guigo, Roderic and Gustafson, Erik A and Haerty, Wilfried and Hahn, Matthew W and Halligan, Daniel L and Halpern, Aaron L and Halter, Gillian M and Han, Mira V and Heger, andreas and Hillier, LaDeana and Hinrichs, Angie S and Holmes, Ian and Hoskins, Roger A and Hubisz, Melissa J and Hultmark, Dan and Huntley, Melanie A and Jaffe, David B and Jagadeeshan, Santosh and Jeck, William R and Johnson, Justin and Jones, Corbin D and Jordan, William C and Karpen, Gary H and Kataoka, Eiko and Keightley, Peter D and Kheradpour, Pouya and Kirkness, Ewen F and Koerich, Leonardo B and Kristiansen, Karsten and Kudrna, Dave and Kulathinal, Rob J and Kumar, Sudhir and Kwok, Roberta and Lander, Eric and Langley, Charles H and Lapoint, Richard and Lazzaro, Brian P and Lee, So-Jeong and Levesque, Lisa and Li, Ruiqiang and Lin, Chiao-Feng and Lin, Michael F and Lindblad-Toh, Kerstin and Llopart, Ana and Long, Manyuan and Low, Lloyd and Lozovsky, Elena and Lu, Jian and Luo, Meizhong and Machado, Carlos A and Makalowski, Wojciech and Marzo, Mar and Matsuda, Muneo and Matzkin, Luciano and McAllister, Bryant and McBride, Carolyn S and McKernan, Brendan and McKernan, Kevin and Mendez-Lago, Maria and Minx, Patrick and Mollenhauer, Michael U and Montooth, Kristi and Mount, Stephen M and Mu, Xu and Myers, Eugene and Negre, Barbara and Newfeld, Stuart and Nielsen, Rasmus and Noor, Mohamed A F and O'Grady, Patrick and Pachter, Lior and Papaceit, Montserrat and Parisi, Matthew J and Parisi, Michael and Parts, Leopold and Pedersen, Jakob S and Pesole, Graziano and Phillippy, Adam M and Ponting, Chris P and Pop, Mihai and Porcelli, Damiano and Powell, Jeffrey R and Prohaska, Sonja and Pruitt, Kim and Puig, Marta and Quesneville, Hadi and Ravi Ram, Kristipati and Rand, David and Rasmussen, Matthew D and Reed, Laura K and Reenan, Robert and Reily, Amy and Remington, Karin A and Rieger, Tania T and Ritchie, Michael G and Robin, Charles and Rogers, Yu-Hui and Rohde, Claudia and Rozas, Julio and Rubenfield, Marc J and Ruiz, Alfredo and Russo, Susan and Salzberg, Steven L and Sanchez-Gracia, Alejandro and Saranga, David J and Sato, Hajime and Schaeffer, Stephen W and Schatz, Michael C and Schlenke, Todd and Schwartz, Russell and Segarra, Carmen and Singh, Rama S and Sirot, Laura and Sirota, Marina and Sisneros, Nicholas B and Smith, Chris D and Smith, Temple F and Spieth, John and Stage, Deborah E and Stark, Alexander and Stephan, Wolfgang and Strausberg, Robert L and Strempel, Sebastian and Sturgill, David and Sutton, Granger and Sutton, Granger G and Tao, Wei and Teichmann, Sarah and Tobari, Yoshiko N and Tomimura, Yoshihiko and Tsolas, Jason M and Valente, Vera L S and Venter, Eli and Craig Venter, J and Vicario, Saverio and Vieira, Filipe G and Vilella, Albert J and Villasante, Alfredo and Walenz, Brian and Wang, Jun and Wasserman, Marvin and Watts, Thomas and Wilson, Derek and Wilson, Richard K and Wing, Rod A and Wolfner, Mariana F and Wong, Alex and Ka-Shu Wong, Gane and Wu, Chung-I and Wu, Gabriel and Yamamoto, Daisuke and Yang, Hsiao-Pei and Yang, Sh...},
title = {{Evolution of genes and genomes on the \textit{Drosophila} phylogeny}},
journal = {Nature},
year = {2007},
volume = {450},
number = {7167},
pages = {203--218},
month = nov
}
@article{Stutchbury:1995im,
author = {PERLUT, NOAH G and Freeman-Gallant, Corey R and STRONG, ALLAN M and DONOVAN, THERESE M and Kilpatrick, C William and ZALIK, NATHAN J},
title = {{Agricultural management affects evolutionary processes in a migratory songbird}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {5},
pages = {1248--1255},
month = mar
}
@article{Anonymous:Y8pXZQ3n,
title = {{New Species of \textit{Ctenomys} Blainville 1826 (Rodentia: Ctenomyidae) from the Lowlands and Central Valleys of Bolivia}},
year = {2014},
pages = {1--41},
month = jun
}
@article{Bon:2008iq,
author = {Bon, C and Caudy, N and de Dieuleveult, M and Fosse, P and Philippe, M and Maksud, F and Beraud-Colomb, E and Bouzaid, E and Kefi, R and Laugier, C and Rousseau, B and Casane, D and van der Plicht, J and Elalouf, J M},
title = {{From the Cover: Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {45},
pages = {17447--17452},
month = nov
}
@article{Decker:2009jy,
author = {Decker, Jared E and Pires, J Chris and Conant, Gavin C and McKay, Stephanie D and Heaton, Michael P and Chen, Kefei and Cooper, Alan and Vilkki, Johanna and Seabury, Christopher M and Caetano, Alexandre R and Johnson, Gary S and Brenneman, Rick A and Hanotte, Olivier and Eggert, Lori S and Wiener, Pamela and Kim, Jong-Joo and Kim, Kwan Suk and Sonstegard, Tad S and van Tassell, Curt P and Neibergs, Holly L and McEwan, John C and Brauning, Rudiger and Coutinho, Luiz L and Babar, Masroor E and Wilson, Gregory A and McClure, Matthew C and Rolf, Megan M and Kim, Jaewoo and Schnabel, Robert D and Taylor, Jeremy F},
title = {{Resolving the evolution of extant and extinct ruminants with high-throughput phylogenomics.}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {44},
pages = {18644--18649},
month = nov
}
@article{CamachoSanchez:2013bn,
author = {Camacho-Sanchez, Miguel and Burraco, Pablo and Gomez-Mestre, Ivan and Leonard, Jennifer A},
title = {{Preservation of RNA and DNA from mammal samples under field conditions}},
journal = {Molecular Ecology Resources},
year = {2013},
volume = {13},
number = {4},
pages = {663--673},
month = apr
}
@article{Hutchinson:2005hp,
author = {HUTCHINSON, JOHN M C},
title = {{Is more choice always desirable? Evidence and arguments from leks, food selection, and environmental enrichment}},
journal = {Biological Reviews},
year = {1999},
volume = {80},
number = {1},
pages = {73--92}
}
@article{Arking:2010fc,
author = {Arking, Dan E and Reinier, Kyndaron and Post, Wendy and Jui, Jonathan and Hilton, Gina and O'Connor, Ashley and Prineas, Ronald J and Boerwinkle, Eric and Psaty, Bruce M and Tomaselli, Gordon F and Rea, Thomas and Sotoodehnia, Nona and Siscovick, David S and Burke, Gregory L and Marban, Eduardo and Spooner, Peter M and Chakravarti, Aravinda and Chugh, Sumeet S},
title = {{Genome-Wide Association Study Identifies GPC5 as a Novel Genetic Locus Protective against Sudden Cardiac Arrest}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9879},
month = mar
}
@article{DUNMIRE:1960tj,
author = {DUNMIRE, WW},
title = {{AN ALTITUDINAL SURVEY OF REPRODUCTION IN PEROMYSCUS-MANICULATUS}},
journal = {Ecology},
year = {1960},
volume = {41},
number = {1},
pages = {174--182}
}
@article{Hoffert:2009dz,
author = {Hoffert, J D and Chou, C L and Knepper, M A},
title = {{Aquaporin-2 in the "-omics" Era}},
journal = {Journal of Biological Chemistry},
year = {2009},
volume = {284},
number = {22},
pages = {14683--14687},
month = may
}
@article{Frost:2010ch,
author = {Frost, C L and Fern{\'a}ndez-Mar{\'\i}n, H and Smith, J E and Hughes, W O H},
title = {{Multiple gains and losses of Wolbachia symbionts across a tribe of fungus-growing ants}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {18},
pages = {4077--4085},
month = aug
}
@article{Jones:2009ii,
author = {Jones, Beatrix and Walsh, Daniel and Werner, Lillian and Fiumera, Anthony},
title = {{Using blocks of linked single nucleotide polymorphisms as highly polymorphic genetic markers for parentage analysis}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {2},
pages = {487--497},
month = jan
}
@article{Manenti:2009ew,
author = {Manenti, Giacomo and Galvan, Antonella and Pettinicchio, Angela and Trincucci, Gaia and Spada, Elena and Zolin, Anna and Milani, Silvano and Gonzalez-Neira, Anna and Dragani, Tommaso A},
title = {{Mouse Genome-Wide Association Mapping Needs Linkage Analysis to Avoid False-Positive Loci}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {1},
pages = {e1000331},
month = jan
}
@article{Perfito:2012jf,
author = {Perfito, Nicole and Jeong, Sun Young and Jeong, Sun Young and Silverin, Bengt and Silverin, Bengt and Calisi, Rebecca M and Bentley, George E and Hau, Michaela and Hau, Michaela},
title = {{Anticipating Spring: Wild Populations of Great Tits (Parus major) Differ in Expression of Key Genes for Photoperiodic Time Measurement}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e34997},
month = apr
}
@article{Swanson:2003vz,
author = {Swanson, WJ and Nielsen, R and Yang, QF},
title = {{Pervasive adaptive evolution in mammalian fertilization proteins}},
journal = {Molecular Biology and Evolution},
year = {2003},
volume = {20},
number = {1},
pages = {18--20}
}
@article{Anonymous:Comq3K0F,
title = {{45599092}},
year = {2012},
month = jun
}
@article{anderson:2007kn,
author = {anderson, Michael G and Hauber, Mark E},
title = {{A recognition-free mechanism for reliable rejection of brood parasites}},
journal = {Trends In Ecology {\&} Evolution},
year = {2007},
volume = {22},
number = {6},
pages = {283--286},
month = jun
}
@article{Chen:2011fe,
author = {Chen, Geng and Chen, Geng and Li, Ruiyuan and Li, Ruiyuan and Shi, Leming and Shi, Leming and Qi, Junyi and Qi, Junyi and Hu, Pengzhan and Hu, Pengzhan and Luo, Jian and Luo, Jian and Liu, Mingyao and Liu, Mingyao and Shi, Tieliu and Shi, Tieliu},
title = {{Revealing the missing expressed genes beyond the human reference genome by RNA-Seq.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {590},
month = dec
}
@article{Wagner:2006hm,
author = {Wagner, A P and Creel, S and Kalinowski, S T},
title = {{Estimating relatedness and relationships using microsatellite loci with null alleles}},
journal = {Heredity},
year = {2006},
volume = {97},
number = {5},
pages = {336--345},
month = jul
}
@article{BEEHLER:1988tr,
author = {BEEHLER, BM and FOSTER, MS},
title = {{HOTSHOTS, HOTSPOTS, AND FEMALE PREFERENCE IN THE ORGANIZATION OF LEK MATING SYSTEMS}},
journal = {The American Naturalist},
year = {1988},
volume = {131},
number = {2},
pages = {203--219}
}
@article{Johnstone:2000tl,
author = {Johnstone, RA},
title = {{Models of reproductive skew: A review and synthesis (invited article)}},
journal = {Ethology},
year = {2000},
volume = {106},
number = {1},
pages = {5--26}
}
@article{Pedersen:2008fc,
author = {Pedersen, Amy B and Greives, Timothy J},
title = {{The interaction of parasites and resources cause crashes in a wild mouse population}},
journal = {Journal of Animal Ecology},
year = {2008},
volume = {77},
number = {2},
pages = {370--377},
month = mar
}
@article{Mlot:2011ei,
author = {Mlot, Nathan J and Tovey, Craig A and Hu, David L},
title = {{Fire ants self-assemble into waterproof rafts to survive floods.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {19},
pages = {7669--7673},
month = may
}
@article{Laalaoui:2011cb,
author = {Laalaoui, Abdelhadi and F{\`e}vre-Montange, Michelle and Ahboucha, Samir and Gamrani, Halima},
title = {{Proopiomelanocortin in the arcuate nucleus of the rodent Meriones shawi: effects of dehydration.}},
journal = {Acta Histochemica},
year = {2011},
volume = {113},
number = {3},
pages = {369--374},
month = may
}
@article{Badyaev:2007hh,
author = {Badyaev, Alexander V},
title = {{Evolvability and Robustness in Color Displays: Bridging the Gap between Theory and Data}},
journal = {Evolutionary Biology},
year = {2007},
volume = {34},
number = {1-2},
pages = {61--71},
month = jul
}
@article{Sol:2010ff,
author = {Sol, Daniel and Garcia, N{\'u}ria and Iwaniuk, andrew and Davis, Katie and Meade, andrew and Boyle, W Alice and Sz{\'e}kely, Tam{\'a}s},
title = {{Evolutionary Divergence in Brain Size between Migratory and Resident Birds}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9617},
month = mar
}
@article{Schradin:2011iz,
author = {Schradin, Carsten and LINDHOLM, ANNA K and LINDHOLM, ANNA K and JOHANNESEN, JES and JOHANNESEN, JES and SCHOEPF, IVANA and SCHOEPF, IVANA and YUEN, CHI-HANG and YUEN, CHI-HANG and K{\"o}nig, Barbara and K{\"o}nig, Barbara and Pillay, Neville},
title = {{Social flexibility and social evolution in mammals: a case study of the African striped mouse (Rhabdomys pumilio)}},
journal = {Molecular Ecology},
year = {2011},
pages = {no--no},
month = sep
}
@article{KIRKPATRICK:1990ud,
author = {KIRKPATRICK, M and PRICE, T and Arnold, SJ},
title = {{THE DARWIN-FISHER THEORY OF SEXUAL SELECTION IN MONOGAMOUS BIRDS}},
journal = {Evolution},
year = {1990},
volume = {44},
number = {1},
pages = {180--193}
}
@article{Davies:1985uo,
author = {Davies, NB},
title = {{Cooperation and conflict among dunnocks, \emph{\textit{Prunella modularis}}, in a variable mating system}},
journal = {Animal Behaviour},
year = {1985},
volume = {33},
pages = {628--648}
}
@article{Gershman:2009ka,
author = {Gershman, Susan N},
title = {{POSTCOPULATORY FEMALE CHOICE INCREASES THE FERTILIZATION SUCCESS OF NOVEL MALES IN THE FIELD CRICKET, GRYLLUS VOCALIS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {1},
pages = {67--72},
month = jan
}
@article{Lachnit:2011fi,
author = {Lachnit, Tim and Meske, Diana and Wahl, Martin and Harder, Tilmann and Schmitz, Ruth},
title = {{Epibacterial community patterns on marine macroalgae are host-specific but temporally variable}},
journal = {Environmental Microbiology},
year = {2010},
volume = {13},
number = {3},
pages = {655--665},
month = nov
}
@article{Sergeeva:2009ji,
author = {Sergeeva, Anna and Jansen, Heiko T},
title = {{Neuroanatomical plasticity in the gonadotropin-releasing hormone system of the ewe: Seasonal variation in glutamatergic and $\gamma$-aminobutyric acidergic afferents}},
journal = {The Journal of Comparative Neurology},
year = {2009},
volume = {515},
number = {6},
pages = {615--628},
month = aug
}
@article{Maher:2010kt,
author = {Maher, Christine R and Duron, Melissa},
title = {{Mating system and paternity in woodchucks (Marmota monax)}},
journal = {Journal of Mammalogy},
year = {2010},
volume = {91},
number = {3},
pages = {628--635},
month = jun
}
@article{Sanchez:2009be,
author = {S{\'a}nchez, Cecilia and Smith, Timothy PL and Wiedmann, Ralph T and Vallejo, Roger L and Salem, Mohamed and Yao, Jianbo and Rexroad, Caird E},
title = {{Single nucleotide polymorphism discovery in rainbow trout by deep sequencing of a reduced representation library}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {559}
}
@article{BenAmiBartal:2014fy,
author = {Ben-Ami Bartal, I and Rodgers, D A and Bernardez Sarria, M S and Decety, J and Mason, P},
title = {{Pro-social behavior in rats is modulated by social experience}},
journal = {eLife},
year = {2014},
volume = {3},
number = {0},
pages = {e01385--e01385},
month = jan
}
@article{Kitchen:2006kh,
author = {Kitchen, Ann M and Gese, Eric M and Waits, Lisette P and Karki, Seija M and Schauster, Edward R},
title = {{Multiple breeding strategies in the swift fox, Vulpes velox}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
number = {5},
pages = {1029--1038},
month = may
}
@article{Baele:2013cp,
author = {Baele, Guy and Baele, Guy and Lemey, Philippe and Lemey, Philippe and Vansteelandt, Stijn and Vansteelandt, Stijn},
title = {{Make the most of your samples: Bayes factor estimators for high-dimensional models of sequence evolution}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {85}
}
@article{Cloonan:2009cn,
author = {Cloonan, N and Xu, Q and Faulkner, G J and Taylor, D F and Tang, D T P and Kolle, G and Grimmond, S M},
title = {{RNA-MATE: a recursive mapping strategy for high-throughput RNA-sequencing data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {19},
pages = {2615--2616},
month = sep
}
@article{VANEIJK:1992vc,
author = {VANEIJK, MJT and STEWARTHAYNES, JA and LEWIN, HA},
title = {{EXTENSIVE POLYMORPHISM OF THE BOLA-DRB3 GENE DISTINGUISHED BY PCR-RFLP}},
journal = {Animal Genetics},
year = {1992},
volume = {23},
number = {6},
pages = {483--496}
}
@article{Alagaili:2012ee,
author = {Alagaili, A N and Mohammed, O B and Bennett, N C and Oosthuizen, M K},
title = {{Lights Out, Let's Move About: Locomotory Activity Patterns of Wagner's Gerbil from the Desert of Saudi Arabia}},
journal = {African Zoology},
year = {2012},
volume = {47},
number = {2},
pages = {195--202},
month = oct
}
@article{Richens:2008fj,
author = {Richens, Tiffany and Palmer, Aparna and Prescott, Joseph and Schountz, Tony},
title = {{Genomic organization and phylogenetic utility of deer mouse (\textit{Peromyscus} \textit{maniculatus}) lymphotoxin-alpha and lymphotoxin-beta}},
journal = {BMC Immunology},
year = {2008},
volume = {9},
number = {1},
pages = {62}
}
@article{LYONS:2012ey,
author = {LYONS, JUSTINE I and LYONS, JUSTINE I and PIERCE, AMANDA A and PIERCE, AMANDA A and BARRIBEAU, SETH M and BARRIBEAU, SETH M and STERNBERG, ELEANORE D and STERNBERG, ELEANORE D and MONGUE, ANDREW J and MONGUE, ANDREW J and De ROODE, JACOBUS C and De ROODE, JACOBUS C},
title = {{Lack of genetic differentiation between monarch butterflies with divergent migration destinations.}},
journal = {Molecular Ecology},
year = {2012},
month = may
}
@article{Klein:1998wo,
author = {Klein, SL and Nelson, RJ},
title = {{Adaptive immune responses are linked to the mating system of arvicoline rodents}},
journal = {The American Naturalist},
year = {1998},
volume = {151},
number = {1},
pages = {59--67}
}
@article{Fry:2009hk,
author = {Fry, James D},
title = {{THE GENOMIC LOCATION OF SEXUALLY ANTAGONISTIC VARIATION: SOME CAUTIONARY COMMENTS}},
journal = {Evolution},
year = {2009},
month = dec
}
@article{Millar:2008ga,
author = {Millar, Craig D and Dodd, andrew and anderson, Jennifer and Gibb, Gillian C and Ritchie, Peter A and Baroni, Carlo and Woodhams, Michael D and Hendy, Michael D and Lambert, David M},
title = {{Mutation and Evolutionary Rates in Ad{\'e}lie Penguins from the Antarctic}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {10},
pages = {e1000209},
month = oct
}
@article{NinoVasquez:2000vl,
author = {Nino-Vasquez, JJ and Vogel, D and Rodriguez, R and Moreno, A and Patarroyo, ME and Pluschke, G and Daubenberger, CA},
title = {{Sequence and diversity of DRB genes of Aotus nancymaae, a primate model for human malaria parasites}},
journal = {Immunogenetics},
year = {2000},
volume = {51},
number = {3},
pages = {219--230}
}
@article{Mabry:2008dn,
author = {Mabry, Karen E and Stamps, Judy A},
title = {{Searching for a New Home: Decision Making by Dispersing Brush Mice}},
journal = {The American Naturalist},
year = {2008},
volume = {172},
number = {5},
pages = {625--634},
month = nov
}
@article{Donovan:2000vh,
author = {Donovan, B},
title = {{The repertoire of human efforts to avoid sexually transmissible diseases: past and present - Part 1: Strategies used before or instead of sex}},
journal = {Sexually Transmitted Infections},
year = {2000},
volume = {76},
number = {1},
pages = {7--12}
}
@article{Valenzuela:2003hq,
author = {Valenzuela, Jesus G and Francischetti, Ivo M B and Pham, Van My and Garfield, Mark K and Ribeiro, Jos{\'e} M C},
title = {{Exploring the salivary gland transcriptome and proteome of the Anopheles stephensi mosquito}},
journal = {Insect Biochemistry and Molecular Biology},
year = {2003},
volume = {33},
number = {7},
pages = {717--732},
month = jul
}
@article{Johnson:1987uy,
author = {Johnson, DW and Johnson, DW and Armstrong, DM and Armstrong, DM},
title = {{\textit{Peromyscus} \textit{crinitus}}},
journal = {Mammalian Species},
year = {1987},
pages = {1--8}
}
@article{Carranza:2009ft,
author = {Carranza, J and P REZ-GONZ LEZ, J and Mateos, C and FERN NDEZ-GARC A, J L},
title = {{Parents��� genetic dissimilarity and offspring sex in a polygynous mammal}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {23},
pages = {4964--4973},
month = dec
}
@article{CluttonBrock:1998vu,
author = {Clutton-Brock, TH},
title = {{Reproductive skew, concessions and limited control}},
journal = {Trends In Ecology {\&} Evolution},
year = {1998},
volume = {13},
number = {7},
pages = {288--292}
}
@article{Viblanc:2009ji,
author = {Viblanc, V A and Arnaud, C M and Dobson, F S and Murie, J O},
title = {{Kin selection in Columbian ground squirrels (Urocitellus columbianus): littermate kin provide individual fitness benefits}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1684},
pages = {989--994},
month = feb
}
@article{Tentelier:2008ep,
author = {Tentelier, C{\'e}dric and Guillemaud, Thomas and Ferry, Sarah and Fauvergue, Xavier},
title = {{Microsatellite-based parentage analysis reveals non-ideal free distribution in a parasitoid population}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {9},
pages = {2300--2309},
month = mar
}
@article{Bozinovic:2006iu,
author = {Bozinovic, Francisco and Gallardo, Pedro},
title = {{The water economy of South American desert rodents: from integrative to molecular physiological ecology.}},
journal = {Comparative biochemistry and physiology. Toxicology {\&} pharmacology : CBP},
year = {2006},
volume = {142},
number = {3-4},
pages = {163--172},
month = mar
}
@article{Orsini:2013bba,
author = {Orsini, Luisa and Vanoverbeke, Joost and Swillen, Ine and Mergeay, Joachim and Meester, Luc},
title = {{Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization}},
journal = {Molecular Ecology},
year = {2013},
pages = {1--49},
month = oct
}
@article{Rasmussen:2011ku,
author = {Rasmussen, Morten and Rasmussen, Morten and Guo, Xiaosen and Guo, Xiaosen and Wang, Yong and Wang, Yong and Lohmueller, Kirk E and Lohmueller, Kirk E and Rasmussen, Simon and Rasmussen, Simon and Albrechtsen, anders and Skotte, Line and Skotte, Line and Lindgreen, Stinus and Lindgreen, Stinus and Metspalu, Mait and Metspalu, Mait and Jombart, Thibaut and Jombart, Thibaut and Kivisild, Toomas and Kivisild, Toomas and Zhai, Weiwei and Zhai, Weiwei and Eriksson, anders and Manica, andrea and Manica, andrea and Orlando, Ludovic and Orlando, Ludovic and de La Vega, Francisco M and de La Vega, Francisco M and Tridico, Silvana and Tridico, Silvana and Metspalu, Ene and Metspalu, Ene and Nielsen, Kasper and Nielsen, Kasper and {\'A}vila-Arcos, Mar{\'\i}a C and {\'A}vila-Arcos, Mar{\'\i}a C and Moreno-Mayar, J V{\'\i}ctor and Moreno-Mayar, J V{\'\i}ctor and Muller, Craig and Muller, Craig and Dortch, Joe and Dortch, Joe and Gilbert, M Thomas P and Lund, Ole and Lund, Ole and Wesolowska, Agata and Wesolowska, Agata and Karmin, Monika and Karmin, Monika and Weinert, Lucy A and Weinert, Lucy A and Wang, Bo and Li, Jun and Tai, Shuaishuai and Tai, Shuaishuai and Xiao, Fei and Xiao, Fei and Hanihara, Tsunehiko and Hanihara, Tsunehiko and van Driem, George and van Driem, George and Jha, Aashish R and Jha, Aashish R and Ricaut, Fran{\c c}ois-Xavier and Ricaut, Fran{\c c}ois-Xavier and de Knijff, Peter and de Knijff, Peter and Migliano, andrea B and Migliano, andrea B and Gallego Romero, Irene and Gallego Romero, Irene and Kristiansen, Karsten and Lambert, David M and Brunak, Soren and Brunak, Soren and Forster, Peter and Forster, Peter and Brinkmann, Bernd and Brinkmann, Bernd and Nehlich, Olaf and Nehlich, Olaf and Bunce, Michael and Bunce, Michael and Richards, Michael and Richards, Michael and Gupta, Ramneek and Gupta, Ramneek and Bustamante, Carlos D and Krogh, anders and Krogh, anders and Foley, Robert A and Foley, Robert A and Lahr, Marta M and Lahr, Marta M and Balloux, Francois and Balloux, Francois and Sicheritz-Ponten, Thomas and Sicheritz-Ponten, Thomas and Villems, Richard and Villems, Richard and Nielsen, Rasmus and Wang, Jun and Willerslev, Eske},
title = {{An Aboriginal Australian genome reveals separate human dispersals into Asia.}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6052},
pages = {94--98},
month = oct
}
@article{Chen:2011fb,
author = {Chen, L Y and Chen, L Y and Wei, K C and Wei, K C and Huang, A C Y and Huang, A C Y and Wang, K and Wang, K and Huang, C Y and Huang, C Y and Yi, D and Yi, D and Tang, C Y and Tang, C Y and Galas, D J and Galas, D J and Hood, L E and Hood, L E},
title = {{RNASEQR--a streamlined and accurate RNA-seq sequence analysis program}},
journal = {Nucleic Acids Research},
year = {2011},
month = dec
}
@article{Crestani:1999gf,
author = {Crestani, Florence and Lorez, Matthias and Baer, Kristin and Essrich, Christian and Benke, Dietmar and Laurent, Jean Paul and Belzung, Catherine and Fritschy, Jean-Marc and L{\"u}scher, Bernhard and Mohler, Hanns},
journal = {Nature Neuroscience},
year = {1999},
volume = {2},
number = {9},
pages = {833--839},
month = sep
}
@article{Kempenaers:1997wu,
author = {Kempenaers, B and Verheyren, GR and DHONDT, AA},
title = {{Extrapair paternity in the blue tit (Parus caeruleus): female choice, male characteristics, and offspring quality}},
journal = {Behavioral Ecology},
year = {1997},
volume = {8},
number = {5},
pages = {481--492}
}
@article{Posada:2008bu,
author = {Posada, D},
title = {{jModelTest: Phylogenetic Model Averaging}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {7},
pages = {1253--1256},
month = apr
}
@article{KosakovskyPond:2005bg,
author = {Pond, S L K},
title = {{A Genetic Algorithm Approach to Detecting Lineage-Specific Variation in Selection Pressure}},
journal = {Molecular Biology and Evolution},
year = {2004},
volume = {22},
number = {3},
pages = {478--485},
month = nov
}
@article{Anonymous:2010wd,
title = {{KAPA_Library_Quantification_Kits_Illumina_GA_workflow_Case_Study_Misc}},
year = {2010},
pages = {1--3},
month = feb
}
@article{Lacey:2001wp,
author = {Lacey, EA and Wieczorek, JR},
title = {{Territoriality and male reproductive success in arctic ground squirrels}},
journal = {Behavioral Ecology},
year = {2001},
volume = {12},
number = {5},
pages = {626--632}
}
@article{Badyaev:2002uc,
author = {Badyaev, AV and Hill, GE and Hill, GE and Weckworth, BV and Weckworth, BV},
title = {{Species divergence in sexually selected traits: Increase in song elaboration is related to decrease in plumage ornamentation in finches}},
journal = {Evolution},
year = {2002},
volume = {56},
number = {2},
pages = {412--419}
}
@article{CyprianoSouza:2010jj,
title = {{Cover}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {2},
pages = {NP--NP},
month = feb
}
@article{Seidman:1994wu,
author = {Seidman, SN and Rieder, RO and Rieder, RO},
title = {{A Review of Sexual-Behavior in the United-States}},
journal = {American Journal of Psychiatry},
year = {1994},
volume = {151},
number = {3},
pages = {330--341}
}
@article{Metzker:2010ew,
author = {Metzker, Michael L},
title = {{Sequencing technologies {\textemdash} the next generation}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {11},
number = {1},
pages = {31--46},
month = dec
}
@article{Lawrie:2013uq,
author = {Lawrie, D S and Messer, P W and Hershberg, R},
title = {{Strong Purifying Selection at Synonymous Sites in D. \textit{melanogaster}}},
journal = {arXiv.org},
year = {2013},
eprint = {FA896E23-8803-496C-B472-58A0BFC7096C},
eprinttype = {scholar}
}
@article{Rozen:2008da,
author = {Rozen, D E and Engelmoer, D J P and Smiseth, P T},
title = {{Antimicrobial strategies in burying beetles breeding on carrion}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {46},
pages = {17890--17895},
month = nov
}
@article{Lin:1991ug,
author = {Lin, JH},
title = {{Divergence Measures Based on the Shannon Entropy}},
journal = {Ieee Transactions on Information Theory},
year = {1991},
volume = {37},
number = {1},
pages = {145--151}
}
@article{Ball:2007gc,
author = {Ball, M A and Parker, G A},
title = {{Sperm competition games: the risk model can generate higher sperm allocation to virgin females}},
journal = {Journal of Evolutionary Biology},
year = {2007},
volume = {20},
number = {2},
pages = {767--779},
month = mar
}
@article{Yasukochi:2009hf,
author = {Yasukochi, Y and Nishida, S and Han, S-H and Kurosaki, T and Yoneda, M and Koike, H},
title = {{Genetic Structure of the Asiatic Black Bear in Japan Using Mitochondrial DNA Analysis}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {3},
pages = {297--308},
month = mar
}
@article{Zane:2002ua,
author = {Zane, L and Bargelloni, L and Patarnello, T},
title = {{Strategies for microsatellite isolation: a review}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {1},
pages = {1--16}
}
@article{MacManes:2012cr,
author = {\textbf{MacManes}, Matthew D and Lacey, Eileen A},
title = {{Is Promiscuity Associated with Enhanced Selection on MHC-DQ$\alpha$ in Mice (genus \textit{Peromyscus})?}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e37562},
month = may
}
@article{Hiller:2009be,
author = {Hiller, D and Jiang, H and Xu, W and Wong, W H},
title = {{Identifiability of isoform deconvolution from junction arrays and RNA-Seq.}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {23},
pages = {3056--3059},
month = dec
}
@article{Lee:2007bw,
author = {Lee, Hyuk Je and Boulding, Elizabeth G},
title = {{Mitochondrial DNA variation in space and time in the northeastern Pacific gastropod, Littorina keenae}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {15},
pages = {3084--3103},
month = aug
}
@article{Costa:2005vj,
author = {Costa, JT and Costa, JT and Fitzgerald, TD and Fitzgerald, TD},
title = {{Social terminology revisited: Where are we ten years later?}},
journal = {Annales Zoologici Fennici},
year = {2005},
volume = {42},
number = {6},
pages = {559--564}
}
@article{Amavet:2008ju,
author = {Amavet, Patricia and Rosso, Esteban and Markariani, Rosa and Pi{\~n}a, Carlos Ignacio},
title = {{Microsatellite DNA markers applied to detection of multiple paternity in Caiman latirostrisin Santa Fe, Argentina}},
journal = {Journal of Experimental Zoology Part A-Ecological Genetics and Physiology},
year = {2008},
volume = {309A},
number = {10},
pages = {637--642},
month = dec
}
@article{Snow:2005ft,
author = {Snow, L S E and andrade, M C B},
title = {{Multiple sperm storage organs facilitate female control of paternity}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2005},
volume = {272},
number = {1568},
pages = {1139--1144},
month = jun
}
@article{Potts:1991fj,
author = {Potts, W K and Manning, C J and Wakeland, E K},
title = {{Mating patterns in seminatural populations of mice influenced by MHC genotype.}},
journal = {Nature},
year = {1991},
volume = {352},
number = {6336},
pages = {619--621},
month = aug
}
@article{Kim:2008fx,
author = {Kim, S T and Donoghue, M J},
title = {{Incongruence between cpDNA and nrITS trees indicates extensive hybridization within Eupersicaria (Polygonaceae)}},
journal = {American Journal of Botany},
year = {2008},
volume = {95},
number = {9},
pages = {1122--1135},
month = aug
}
@article{Bell:2008ii,
author = {Bell, M B V},
title = {{Receiver identity modifies begging intensity independent of need in banded mongoose (Mungos mungo) pups}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {6},
pages = {1087--1094},
month = nov
}
@article{Mcrobie:2009kq,
author = {Mcrobie, H and Thomas, A and Kelly, J},
title = {{The Genetic Basis of Melanism in the Gray Squirrel (Sciurus carolinensis)}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {6},
pages = {709--714},
month = nov
}
@article{Viljakainen:2009eb,
author = {Viljakainen, L and Evans, J D and Hasselmann, M and Rueppell, O and Tingek, S and PAMILO, P},
title = {{Rapid Evolution of Immune Proteins in Social Insects}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {8},
pages = {1791--1801},
month = jul
}
@article{Pries:2009vg,
author = {Pries, Alexander J and Pries, Alexander J and Branch, Lyn C and Branch, Lyn C and Miller, Deborah L and Miller, Deborah L},
title = {{IMPACT OF HURRICANES ON HABITAT OCCUPANCY AND SPATIAL DISTRIBUTION OF BEACH MICE}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {4},
pages = {841--850}
}
@article{Normandin:2011bb,
author = {Normandin, Joseph J and Normandin, Joseph J and Murphy, Anne Z and Murphy, Anne Z},
title = {{Somatic genital reflexes in rats with a nod to humans: Anatomy, physiology, and the role of the social neuropeptides.}},
journal = {Hormones and Behavior},
year = {2011},
volume = {59},
number = {5},
pages = {656--665},
month = may
}
@article{GRANT:uz,
author = {Grant, B R and Grant, B R and Grant, P R},
title = {{Evolution of Darwin's Finches Caused by a Rare Climatic Event}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {1993},
volume = {251},
number = {1331},
pages = {111--117},
month = feb
}
@article{Collet:2012it,
author = {Collet, Julie and Collet, Julie and Richardson, David S and Worley, Kirsty and Worley, Kirsty and Pizzari, Tommaso},
title = {{Sexual selection and the differential effect of polyandry.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {22},
pages = {8641--8645},
month = may
}
@article{OlanoMarin:2011tg,
author = {Olano-Marin, J and Olano-Marin, J and MUELLER, J.C. and MUELLER, J.C. and Kempenaers, B},
title = {{Heterozygosity and survival in blue tits (Cyanistes caeruleus): contrasting effects of presumably functional and neutral loci}},
journal = {Molecular Ecology},
year = {2011}
}
@article{Dunn:1996uk,
author = {Dunn, PO and Cockburn, A},
title = {{Evolution of male parental care in a bird with almost complete cuckoldry}},
journal = {Evolution},
year = {1996},
volume = {50},
number = {6},
pages = {2542--2548}
}
@article{Stockley:1997wu,
author = {Stockley, P and Gage, MJG and Parker, GA and Moller, AP},
title = {{Sperm competition in fishes: The evolution of testis size and ejaculate characteristics}},
journal = {The American Naturalist},
year = {1997},
volume = {149},
number = {5},
pages = {933--954}
}
@article{Rausch:2009hq,
author = {Rausch, T and Koren, S and Denisov, G and Weese, D and Emde, A-K and Doring, A and Reinert, K},
title = {{A consistency-based consensus algorithm for \textit{de novo} and reference-guided sequence assembly of short reads}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {9},
pages = {1118--1124},
month = apr
}
@article{Verheggen:2008gs,
author = {Verheggen, Francois J and Arnaud, Ludovic and Bartram, Stefan and Gohy, Marie and Haubruge, Eric},
title = {{Aphid and Plant Volatiles Induce Oviposition in an Aphidophagous Hoverfly}},
journal = {Journal of Chemical Ecology},
year = {2008},
volume = {34},
number = {3},
pages = {301--307},
month = feb
}
@article{Areal:2011gm,
author = {Areal, Helena and Abrantes, Joana and Esteves, Pedro J},
title = {{Signatures of positive selection in Toll-like receptor (TLR) genes in mammals}},
journal = {BMC Evolutionary Biology},
year = {2011},
volume = {11},
number = {1},
pages = {368}
}
@article{Atarhouch:2006bu,
author = {Atarhouch, Touriya and R{\"u}ber, Lukas and Gonzalez, Elena G and Albert, Eva M and Rami, Mohamed and Dakkak, Allal and Zardoya, Rafael},
title = {{Signature of an early genetic bottleneck in a population of Moroccan sardines (Sardina pilchardus)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2006},
volume = {39},
number = {2},
pages = {373--383},
month = may
}
@article{Schwensow:2007gg,
author = {Steiner, Cynthia C and Schwensow, N and Fietz, J and R{\"o}mpler, Holger and Dausmann, K H and Boettger, Linda M and Sch{\"o}neberg, Torsten and Sommer, S and Hoekstra, Hopi E},
title = {{Neutral versus adaptive genetic variation in parasite resistance: importance of major histocompatibility complex supertypes in a free-ranging primate}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {3},
pages = {265--277},
month = may
}
@article{Kembel:2005vi,
author = {Kembel, SW and Cahill, JF},
title = {{Plant phenotypic plasticity belowground: A phylogenetic perspective on root foraging trade-offs}},
journal = {The American Naturalist},
year = {2005},
volume = {166},
number = {2},
pages = {216--230}
}
@article{Harismendy:2009dh,
author = {Harismendy, Olivier and Ng, Pauline C and Strausberg, Robert L and Wang, Xiaoyun and Stockwell, Timothy B and Beeson, Karen Y and Schork, Nicholas J and Murray, Sarah S and Topol, Eric J and Levy, Samuel and Frazer, Kelly A},
title = {{Evaluation of next generation sequencing platforms for population targeted sequencing studies}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {3},
pages = {R32}
}
@article{Cheval:2012di,
author = {Cheval, Lydie and Pierrat, Fabien and Pierrat, Fabien and Rajerison, Rabary and Rajerison, Rabary and Piquemal, David and Piquemal, David and Doucet, Alain},
title = {{of Mice and Men: Divergence of Gene Expression Patterns in Kidney}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {10},
pages = {e46876},
month = oct
}
@article{Reiber:2008bq,
author = {Reiber, Chris},
title = {{An evolutionary model of premenstrual syndrome}},
journal = {Medical Hypotheses},
year = {2008},
volume = {70},
number = {5},
pages = {1058--1065},
month = jan
}
@article{COMEAULT:2012ja,
author = {COMEAULT, AARON A and COMEAULT, AARON A and SOMMERS, MATHEW and SOMMERS, MATHEW and SCHWANDER, TANJA and SCHWANDER, TANJA and Buerkle, C Alex and Buerkle, C Alex and FARKAS, TIMOTHY E and FARKAS, TIMOTHY E and NOSIL, PATRIK and NOSIL, PATRIK and PARCHMAN, THOMAS L and PARCHMAN, THOMAS L},
title = {{\textit{De novo} characterization of the Timema cristinae transcriptome facilitates marker discovery and inference of genetic divergence}},
journal = {Molecular Ecology Resources},
year = {2012},
pages = {no--no},
month = feb
}
@article{Ditchkoff:2001un,
author = {Ditchkoff, SS and Lochmiller, RL and Masters, RE and Hoofer, SR and van den Bussche, RA},
title = {{Major-histocompatibility-complex-associated variation in secondary sexual traits of white-tailed deer (\textit{Odocoileus virginianus}): Evidence for good-genes advertisement}},
journal = {Evolution},
year = {2001},
volume = {55},
number = {3},
pages = {616--625}
}
@article{Ortells:2012go,
author = {Ortells, M C and Morancho, B and Drews-Elger, K and Viollet, B and Laderoute, K R and Lopez-Rodriguez, C and Aramburu, J},
title = {{Transcriptional regulation of gene expression during osmotic stress responses by the mammalian target of rapamycin}},
journal = {Nucleic Acids Research},
year = {2012},
volume = {40},
number = {10},
pages = {4368--4384},
month = may
}
@article{YoderHimes:2009jw,
author = {Yoder-Himes, D R and Chain, P S G and Zhu, Y and Wurtzel, O and Rubin, E M and Tiedje, J M and Sorek, R},
title = {{Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {10},
pages = {3976--3981},
month = mar
}
@article{Fraser:2009dh,
author = {Fraser, C and Alm, E J and Polz, M F and Spratt, B G and Hanage, W P},
title = {{The Bacterial Species Challenge: Making Sense of Genetic and Ecological Diversity}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5915},
pages = {741--746},
month = feb
}
@article{Sukumaran:2010id,
author = {Sukumaran, J and Holder, M T},
title = {{DendroPy: a Python library for phylogenetic computing}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {12},
pages = {1569--1571},
month = jun
}
@article{Mathot:2010ib,
author = {Mathot, K J and Giraldeau, L A},
title = {{Within-group relatedness can lead to higher levels of exploitation: a model and empirical test}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {4},
pages = {843--850},
month = jun
}
@article{Herron:2004ef,
author = {Herron, Matthew D and Castoe, Todd A and Parkinson, Christopher L},
title = {{Sciurid phylogeny and the paraphyly of Holarctic ground squirrels (Spermophilus)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2004},
volume = {31},
number = {3},
pages = {1015--1030},
month = jun
}
@article{Yassour:2009jc,
author = {Yassour, M and Kaplan, T and Fraser, H B and Levin, J Z and Pfiffner, J and Adiconis, X and Schroth, G and Luo, S and Khrebtukova, I and Gnirke, A and Nusbaum, C and Thompson, D A and Friedman, N and Regev, A},
title = {{Ab initio construction of a eukaryotic transcriptome by massively parallel mRNA sequencing}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {9},
pages = {3264--3269},
month = mar
}
@article{Jn:2009vb,
author = {Jn-00},
title = {{Plant genomes do a balancing act}},
year = {2009},
pages = {1--3},
month = apr
}
@article{Miller:2009gk,
author = {Miller, W and Drautz, D I and Janecka, J E and Lesk, A M and Ratan, A and Tomsho, L P and Packard, M and Zhang, Y and McClellan, L R and Qi, J and Zhao, F and Gilbert, M T P and Dalen, L and Arsuaga, J L and Ericson, P G P and Huson, D H and Helgen, K M and Murphy, W J and Gotherstrom, A and Schuster, S C},
title = {{The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus)}},
journal = {Genome Research},
year = {2008},
volume = {19},
number = {2},
pages = {213--220},
month = dec
}
@article{Lajoie:2013ko,
author = {Lajoie, M J and Rovner, A J and Goodman, D B and Aerni, H R and Haimovich, A D and Kuznetsov, G and Mercer, J A and Wang, H H and Carr, P A and Mosberg, J A and Rohland, N and Schultz, P G and Jacobson, J M and Rinehart, J and Church, G M and Isaacs, F J},
title = {{Genomically Recoded Organisms Expand Biological Functions}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6156},
pages = {357--360},
month = oct
}
@article{Veres:2012ia,
author = {Veres, M and Veres, M and Duselis, A R and Duselis, A R and Graft, A and Graft, A and Pryor, W and Pryor, W and Crossland, J and Crossland, J and Vrana, P B and Vrana, P B and Szalai, G and Szalai, G},
title = {{The biology and methodology of assisted reproduction in deer mice (\textit{Peromyscus} \textit{maniculatus})}},
journal = {THE},
year = {2012},
volume = {77},
number = {2},
pages = {311--319},
month = jan
}
@article{Liu:2010jx,
author = {Liu, Guimei and Wang, Yue and Wong, Limsoon},
title = {{FastTagger: An efficient algorithm for genome-wide tag SNP selection using multi-marker linkage disequilibrium}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {66}
}
@article{Demary:2007je,
author = {Demary, Kristian C and Lewis, Sara M},
title = {{MALE COURTSHIP ATTRACTIVENESS AND PATERNITY SUCCESS IN PHOTINUS GREENIFIREFLIES}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {2},
pages = {431--439},
month = feb
}
@article{Ament:2012by,
author = {Ament, Seth A and Wang, Ying and Chen, Chieh-Chun and Chen, Chieh-Chun and Blatti, Charles A and Blatti, Charles A and Hong, Feng and Liang, Zhengzheng S and Liang, Zhengzheng S and Negre, Nicolas and Negre, Nicolas and White, Kevin P and White, Kevin P and Rodriguez-Zas, Sandra L and Mizzen, Craig A and Mizzen, Craig A and Sinha, Saurabh and Sinha, Saurabh and Zhong, Sheng and Robinson, Gene E},
title = {{The Transcription Factor Ultraspiracle Influences Honey Bee Social Behavior and Behavior-Related Gene Expression}},
journal = {PLOS Genetics},
year = {2012},
volume = {8},
number = {3},
pages = {e1002596}
}
@article{Groenen:2009iy,
author = {Groenen, Martien A M and Wahlberg, Per and Foglio, Mario and Cheng, Hans H and Megens, Hendrik-Jan and Crooijmans, Richard P M A and Besnier, Francois and Lathrop, Mark and Muir, William M and Wong, Gane Ka-Shu and Gut, Ivo and andersson, Leif},
title = {{A high-density SNP-based linkage map of the chicken genome reveals sequence features correlated with recombination rate.}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {3},
pages = {510--519},
month = mar
}
@article{Fisher:2010fy,
author = {Fisher, Heidi S and Hoekstra, Hopi E},
title = {{Competition drives cooperation among closely related sperm of deer mice.}},
journal = {Nature},
year = {2010},
volume = {463},
number = {7282},
pages = {801--803},
month = feb
}
@article{Shurtliff:2005wt,
author = {Shurtliff, Quinn R and Pearse, Devon E and Rogers, Duke S},
title = {{Parentage analysis of the canyon mouse (\emph{\textit{Peromyscus} \textit{crinitus}}): Evidence for multiple paternity}},
journal = {Journal of Mammalogy},
year = {2005},
volume = {86},
number = {3},
pages = {531--540}
}
@article{NUNNEY:2006gf,
author = {Nunney, Leonard and Schuenzel, Erin L},
title = {{Detecting Natural Selection at the Molecular Level: A Reexamination of Some {\textquotedblleft}Classic{\textquotedblright} Examples of Adaptive Evolution}},
journal = {Journal of Molecular Evolution},
year = {2006},
volume = {62},
number = {2},
pages = {176--195},
month = jan
}
@article{Anonymous:wEQCYERS,
title = {{Sailfish: Alignment-free Isoform Quantification from RNA-seq Reads using Lightweight Algorithms}},
year = {2013},
pages = {1--28},
month = aug
}
@article{Brouwer:2009wd,
author = {Brouwer, Lyanne and Tinbergen, Joost M and Both, Christiaan and Bristol, Rachel and Richardson, David S and Komdeur, Jan},
title = {{Experimental evidence for density-dependent reproduction in a cooperatively breeding passerine}},
journal = {Ecology},
year = {2009},
volume = {90},
number = {3},
pages = {729--741}
}
@article{Evans:2002to,
author = {Evans, JP},
title = {{The molecular basis of sperm-oocyte membrane interactions during mammalian fertilization}},
journal = {Human Reproduction Update},
year = {2002},
volume = {8},
number = {4},
pages = {297--311}
}
@article{Alon:2011dz,
author = {Alon, S and Alon, S and Vigneault, F and Vigneault, F and Eminaga, S and Eminaga, S and Christodoulou, D C and Christodoulou, D C and Seidman, J G and Seidman, J G and Church, G M and Church, G M and Eisenberg, E and Eisenberg, E},
title = {{Barcoding bias in high-throughput multiplex sequencing of miRNA}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {9},
pages = {1506--1511},
month = sep
}
@article{Fierer:2012cv,
author = {Fierer, Noah and Leff, Jonathan W and Leff, Jonathan W and Adams, Byron J and Adams, Byron J and Nielsen, Uffe N and Nielsen, Uffe N and Bates, Scott Thomas and Bates, Scott Thomas and Lauber, Christian L and Owens, Sarah and Owens, Sarah and Gilbert, Jack A and Wall, Diana H and Wall, Diana H and Caporaso, J Gregory and Caporaso, J Gregory},
title = {{Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {52},
pages = {21390--21395},
month = dec
}
@article{Penn:2002tb,
author = {Penn, DJ and Penn, DJ},
title = {{The scent of genetic compatibility: Sexual selection and the major histocompatibility complex}},
journal = {Ethology},
year = {2002},
volume = {108},
number = {1},
pages = {1--21}
}
@article{Panova:2010ib,
author = {Panova, Marina and Bostrom, Johan and Hofving, Tobias and Areskoug, Therese and Eriksson, anders and Mehlig, Bernhard and Makinen, Tuuli and andre, Carl and Johannesson, Kerstin},
title = {{Extreme Female Promiscuity in a Non-Social Invertebrate Species}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9640},
month = mar
}
@article{Dionne:2007vj,
author = {Dionne, Melanie and Miller, Kristina M and Dodson, Julian J and Caron, Francois and Bernatchez, Louis},
title = {{Clinal Variation in MHC Diversity with Temperature: Evidence for the Role of Host-Pathogen Interaction on Local Adaptation in Atlantic Salmon}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {9},
pages = {2154--2164}
}
@article{Rabb:2007um,
author = {Rabb, Hamid and Colvin, Robert B and Arnaout, M Amin and Steinman, Theodore I and Haupert, Harris Dr and Haupert, Garner T and Niles, John L},
title = {{A 41-year-old man with abdominal pain and elevated serum creatinine - Acute tubular injury (acute tubular necrosis) and glomerular podocyte injury, both caused by NSAIDs in association with dehydration}},
journal = {New England Journal of Medicine},
year = {2007},
volume = {357},
number = {15},
pages = {1531--1541}
}
@article{Owens:1998ua,
author = {Owens, IPF and HARTLEY, IR},
title = {{Sexual dimorphism in birds: why are there so many different forms of dimorphism?}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {1998},
volume = {265},
number = {1394},
pages = {397--407}
}
@article{MUELLER:2013fs,
author = {MUELLER, J.C. and Partecke, J and Partecke, J and Hatchwell, B J and Hatchwell, B J and Gaston, K J and Gaston, K J and Evans, K L and Evans, K L},
title = {{Candidate gene polymorphisms for behavioural adaptations during urbanization in blackbirds}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = mar
}
@article{OConnor:2006vq,
author = {O'Connor, Kathleen D and Marr, Amy B and Arcese, Peter and Keller, Lukas F and Jeffery, Kathryn J and Bruford, Michael W},
title = {{Extra-pair fertilization and effective population size in the song sparrow \textit{Melospiza} \textit{melodia}}},
journal = {Journal of Avian Biology},
year = {2006},
volume = {37},
number = {6},
pages = {572--578}
}
@article{Yao:2011ko,
author = {Yao, G and Yao, G and Ye, L and Ye, L and Gao, H and Gao, H and Minx, P and Minx, P and Warren, W C and Weinstock, G M and Weinstock, G M},
title = {{Graph accordance of next-generation sequence assemblies}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {28},
number = {1},
pages = {13--16},
month = dec
}
@article{Ralph:2010it,
author = {Ralph, P and Coop, G},
title = {{Parallel Adaptation: One or Many Waves of Advance of an Advantageous Allele?}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {2},
pages = {647--668},
month = oct
}
@article{Wei:2010ez,
author = {Wei, Kun and Zhang, Zhihe and Wang, Xiaofang and Zhang, Wenping and Xu, Xiao and Shen, Fujun and Yue, Bisong},
title = {{Lineage pattern, trans-species polymorphism, and selection pressure among the major lineages of feline MHC-DRB peptide-binding region.}},
journal = {Immunogenetics},
year = {2010},
volume = {62},
number = {5},
pages = {307--317},
month = may
}
@article{Young:1999we,
author = {Young, LJ and Nilsen, R and Waymire, KG and MacGregor, GR and Insel, TR},
title = {{Increased affiliative response to vasopressin in mice expressing the V-1a receptor from a monogamous vole}},
journal = {Nature},
year = {1999},
volume = {400},
number = {6746},
pages = {766--768}
}
@article{Churches:2012gt,
author = {Churches, Owen and Churches, Owen and Callahan, Rebecca and Callahan, Rebecca and Michalski, Dana and Michalski, Dana and Brewer, Nicola and Brewer, Nicola and Turner, Emma and Turner, Emma and Keage, Hannah Amy Diane and Keage, Hannah Amy Diane and Thomas, Nicole Annette and Thomas, Nicole Annette and Nicholls, Mike Elmo Richard and Nicholls, Mike Elmo Richard},
title = {{How Academics Face the World: A Study of 5829 Homepage Pictures}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e38940},
month = jul
}
@article{Freckleton:2009df,
author = {Freckleton, R P and Jetz, W},
title = {{Space versus phylogeny: disentangling phylogenetic and spatial signals in comparative data}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1654},
pages = {21--30},
month = jan
}
@article{Ramsdell:2008hq,
author = {Ramsdell, Clifton M and Lewandowski, Adrienne A and Glenn, Julie and Vrana, Paul B and O'Neill, Rachel J and Dewey, Michael J},
title = {{Comparative genome mapping of the deer mouse (\textit{Peromyscus} \textit{maniculatus}) reveals greater similarity to rat (Rattus norvegicus) than to the lab mouse (Mus musculus)}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {65}
}
@article{Hayssen:2008vd,
author = {Hayssen, Virginia},
title = {{Reproductive effort in squirrels: Ecological, phylogenetic, allometric, and latitudinal patterns}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {3},
pages = {582--606}
}
@article{Gauffre:2009ce,
author = {Gauffre, B and Petit, E and Brodier, S and Bretagnolle, V and Cosson, J F},
title = {{Sex-biased dispersal patterns depend on the spatial scale in a social rodent}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1672},
pages = {3487--3494},
month = aug
}
@article{Seager:2007ha,
author = {Seager, R and Ting, M and Held, I and Kushnir, Y and Lu, J and Vecchi, G and Huang, H P and Harnik, N and Leetmaa, A and Lau, N C and Li, C and Velez, J and Naik, N},
title = {{Model Projections of an Imminent Transition to a More Arid Climate in Southwestern North America}},
journal = {Science (New York, NY)},
year = {2007},
volume = {316},
number = {5828},
pages = {1181--1184},
month = may
}
@article{Assie:2010hd,
author = {Assi{\'e}, Guillaume and Guillaud-Bataille, Marine and Ragazzon, Bruno and Bertagna, Xavier and Bertherat, J{\'e}r{\^o}me and Clauser, Eric},
title = {{The pathophysiology, diagnosis and prognosis of adrenocortical tumors revisited by transcriptome analyses}},
journal = {Trends in Endocrinology {\&} Metabolism},
year = {2010},
volume = {21},
number = {5},
pages = {325--334},
month = may
}
@article{Dunn:2008is,
author = {Dunn, E W and Aknin, L B and Norton, M I},
title = {{Spending Money on Others Promotes Happiness}},
journal = {Science (New York, NY)},
year = {2008},
volume = {319},
number = {5870},
pages = {1687--1688},
month = mar
}
@article{Stoltz:1986up,
author = {Stoltz, D B and Guzo, D and Cook, D},
title = {{Studies on polydnavirus transmission.}},
journal = {Virology},
year = {1986},
volume = {155},
number = {1},
pages = {120--131},
month = nov
}
@article{Amar:2013km,
author = {Amar, David and Safer, Hershel and Shamir, Ron},
title = {{Dissection of Regulatory Networks that Are Altered in Disease via Differential Co-expression}},
journal = {PLOS Computational Biology},
year = {2013},
volume = {9},
number = {3},
pages = {e1002955},
month = mar
}
@article{Polak:2009bq,
author = {Polak, M and Simmons, L W},
title = {{Secondary sexual trait size reveals competitive fertilization success in \textit{Drosophila} bipectinata Duda}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {4},
pages = {753--760},
month = jul
}
@article{Blumstein:2010gs,
author = {Blumstein, Daniel T},
title = {{Towards an integrative understanding of social behavior: new models and new opportunities}},
journal = {Frontiers in Behavioral Neuroscience},
year = {2010}
}
@article{Pepke:2009fu,
author = {Pepke, Shirley and Pepke, Shirley and Wold, Barbara and Mortazavi, Ali},
title = {{Computation for ChIP-seq and RNA-seq studies.}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {11 Suppl},
pages = {S22--32},
month = nov
}
@article{Harpending:1994ts,
author = {Harpending, HC and Harpending, HC},
title = {{Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution}},
journal = {Human Biology},
year = {1994},
volume = {66},
number = {4},
pages = {591--600}
}
@article{Nielsen:2001wv,
author = {Nielsen, R},
title = {{Statistical tests of selective neutrality in the age of genomics}},
journal = {Heredity},
year = {2001},
volume = {86},
number = {6},
pages = {641--647}
}
@article{Heri:2010wb,
author = {Heri01},
title = {{GB-11-1-202_Birol.indd}},
year = {2010},
pages = {1--4},
month = feb
}
@article{Schaschl:2005cy,
author = {Schaschl, Helmut and Schaschl, Helmut and Suchentrunk, Franz and Suchentrunk, Franz and Hammer, Sabine and Hammer, Sabine and Goodman, Simon J and Goodman, Simon J},
title = {{Recombination and the origin of sequence diversity in the DRB MHC class II locus in chamois (Rupicapra spp.).}},
journal = {Immunogenetics},
year = {2005},
volume = {57},
number = {1-2},
pages = {108--115},
month = apr
}
@article{Schneider:2012fa,
author = {Schneider, Jonathan and Schneider, Jonathan and Dickinson, Michael H and Levine, Joel D},
title = {{Social structures depend on innate determinants and chemosensory processing in \textit{Drosophila}.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109 Suppl 2},
pages = {17174--17179},
month = oct
}
@article{Tallmon:2004uy,
author = {Tallmon, DA and Luikart, G and Beaumont, MA},
title = {{Comparative evaluation of a new effective population size estimator based on approximate Bayesian computation}},
journal = {Genetics},
year = {2004},
volume = {167},
number = {2},
pages = {977--988}
}
@article{Wittenberger:1981ts,
author = {Wittenberger, J F},
title = {{MALE QUALITY AND POLYGYNY - THE SEXY SON HYPOTHESIS REVISITED}},
journal = {The American Naturalist},
year = {1981},
volume = {117},
number = {3},
pages = {329--342}
}
@article{Bai:2011kg,
author = {Bai, Xiaodong and Mamidala, Praveen and Rajarapu, Swapna P and Jones, Susan C and Mittapalli, Omprakash},
title = {{Transcriptomics of the Bed Bug (Cimex lectularius)}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {1},
pages = {e16336},
month = jan
}
@article{Weisburg:1991wz,
author = {Weisburg, WG and Weisburg, WG and Barns, SM and Barns, SM and Pelletier, DA and Pelletier, DA and Lane, DJ and Lane, DJ},
title = {{16S Ribosomal Dna Amplification for Phylogenetic Study}},
journal = {Journal of Bacteriology},
year = {1991},
volume = {173},
number = {2},
pages = {697--703}
}
@article{Weber:2004bm,
author = {Weber, DS and Stewart, BS and Schienman, J and Lehman, N},
title = {{Major histocompatibility complex variation at three class II loci in the northern elephant seal}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {3},
pages = {711--718}
}
@article{Patzenhauerova:2009cl,
author = {Patzenhauerov{\'a}, Hana and Bryja, Josef and {\v{S}}umbera, Radim},
title = {{Kinship structure and mating system in a solitary subterranean rodent, the silvery mole-rat}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {64},
number = {5},
pages = {757--767},
month = dec
}
@article{Alonzo:2012fm,
author = {Alonzo, S H and Alonzo, S H},
title = {{Sexual selection favours male parental care, when females can choose}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1734},
pages = {1784--1790},
month = mar
}
@article{Au:2013hp,
author = {Au, Kin Fai and Sebastiano, Vittorio and Afshar, Pegah Tootoonchi and Durruthy, Jens Durruthy and Lee, Lawrence and Williams, Brian A and van Bakel, Harm and Schadt, Eric E and Reijo-Pera, Renee A and Underwood, Jason G and Wong, Wing Hung},
title = {{Characterization of the human ESC transcriptome by hybrid sequencing.}},
journal = {PNAS},
year = {2013},
volume = {110},
number = {50},
pages = {201320101--30},
month = nov
}
@article{Spaulding:2006ek,
author = {Spaulding, A W and Mock, K E and Schroeder, M A and Warheit, K I},
title = {{Recency, range expansion, and unsorted lineages: implications for interpreting neutral genetic variation in the sharp-tailed grouse (Tympanuchus phasianellus)}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {9},
pages = {2317--2332},
month = may
}
@article{Janiga:2007fc,
author = {Janiga, Marian and Sedlarova, Agnesa and Rigg, Robin and Novotna, Martina},
title = {{Patterns of prevalence among bacterial communities of alpine accentors (Prunella collaris) in the Tatra Mountains}},
journal = {Journal of Ornithology},
year = {2006},
volume = {148},
number = {2},
pages = {135--143},
month = dec
}
@article{WojczulanisJakubas:2009hs,
author = {Wojczulanis-Jakubas, Katarzyna and Jakubas, Dariusz and Oigarden, Trond and Lifjeld, Jan T},
title = {{Extrapair copulations are frequent but unsuccessful in a highly colonial seabird, the little auk, \textit{Alle alle}}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {433--438},
month = feb
}
@article{Anonymous:xJHASpEh,
title = {{DEGseq}},
year = {2011},
pages = {1--20},
month = mar
}
@article{GROENEN:1990ut,
author = {GROENEN, MAM and VANDERPOEL, JJ and DIJKHOF, RJM and GIPHART, MJ},
title = {{THE NUCLEOTIDE-SEQUENCE OF BOVINE MHC CLASS-II DQB AND DRB GENES}},
journal = {Immunogenetics},
year = {1990},
volume = {31},
number = {1},
pages = {37--44}
}
@article{Ubeda:2011vp,
author = {Ubeda, F},
title = {{A Model for Genomic Imprinting in the Social Brain: Elders}},
journal = {Evolution},
year = {2011}
}
@article{Anonymous:7YZ6Rn3b,
title = {{2005-3}},
year = {2005},
pages = {10},
month = apr
}
@article{Wilson:2011fc,
author = {Wilson, Daniel J and Wilson, Daniel J and Hernandez, Ryan D and Hernandez, Ryan D and andolfatto, Peter and Przeworski, Molly},
title = {{A Population Genetics-Phylogenetics Approach to Inferring Natural Selection in Coding Sequences}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {12},
pages = {e1002395},
month = dec
}
@article{Zhang:2012fj,
author = {Zhang, Yueliang and Wang, Lihua and Guo, Huifang and Li, Guoqing and Zhang, Zhichun and Xie, Lin and Fang, Jichao},
title = {{A transcriptome-based screen of carboxylesterase-like genes that are involved in chlorpyrifos resistance in \textit{Laodelphax striatellus}(Fall{\'e}n)}},
journal = {Pesticide Biochemistry and Physiology},
year = {2012}
}
@article{Roughgarden:2010fj,
author = {Roughgarden, Joan and Ak{\c c}ay, Erol},
title = {{Do we need a Sexual Selection 2.0?}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {3},
pages = {e1--e4},
month = mar
}
@article{Anonymous:gXde-rIp,
title = {{One cost of being gold: selective predation and implications for the maintenance of the Midas cichlid colour polymorphism (Perciformes: Cichlidae)}},
year = {2013},
pages = {1--9},
month = dec
}
@article{Kg:2004vq,
author = {Kg, Springer-Verlag GmbH Co},
title = {{Unbekannt}},
year = {2004},
pages = {1--4},
month = may
}
@article{Armitage:2011gi,
author = {Armitage, Sophie A O and Broch, Jens F and Mar{\'\i}n, Hermogenes Fern{\'a}ndez and Nash, David R and Boomsma, Jacobus J},
title = {{IMMUNE DEFENSE IN LEAF-CUTTING ANTS: A CROSS-FOSTERING APPROACH}},
journal = {Evolution},
year = {2011},
volume = {65},
number = {6},
pages = {1791--1799},
month = feb
}
@article{Marguerat:2008eu,
author = {Marguerat, Samuel and Wilhelm, Brian T and B{\"a}hler, J{\"u}rg},
title = {{Next-generation sequencing: applications beyond genomes}},
journal = {Biochemical Society Transactions},
year = {2008},
volume = {36},
number = {5},
pages = {1091},
month = oct
}
@article{Chillo:2010iy,
author = {Chillo, Ver{\'o}nica and Chillo, Ver{\'o}nica and Rodr{\'\i}guez, Daniela and Rodr{\'\i}guez, Daniela and Ojeda, Ricardo A and Ojeda, Ricardo A},
title = {{Niche partitioning and coexistence between two mammalian herbivores in the Dry Chaco of Argentina}},
journal = {Acta Oecologica},
year = {2010},
volume = {36},
number = {6},
pages = {611--616},
month = nov
}
@article{McPhee:2009cz,
author = {McPhee, M Elsbeth and Ribbeck, Amanda E and Johnston, Robert E},
title = {{Male golden hamsters (Mesocricetus auratus) are more reactive than females to a visual predator cue}},
journal = {Journal of Ethology},
year = {2008},
volume = {27},
number = {1},
pages = {137--141},
month = jun
}
@article{Coulon:2009hd,
author = {Coulon, A},
title = {{genhet: an easy-to-use R function to estimate individual heterozygosity}},
journal = {Molecular Ecology Resources},
volume = {10},
number = {1},
pages = {167--169}
}
@article{Mayr:1971vo,
author = {Mayr, W and Mayr, W},
title = {{Die Genetik des HL-A-Systems}},
journal = {Human Genetics},
year = {1971},
volume = {12},
number = {3},
pages = {195--243}
}
@article{Kunz:2009do,
author = {Kunz, Thomas H and Hosken, David J},
title = {{Male lactation: why, why not and is it care?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {2},
pages = {80--85},
month = feb
}
@article{Tollenaere:2012gj,
author = {Tollenaere, C and Jacquet, S and Ivanova, S and Loiseau, A and Duplantier, J M and Streiff, R and Brouat, C},
title = {{Beyond an AFLP genome scan towards the identification of immune genes involved in plague resistance in Rattus rattusfrom Madagascar}},
journal = {Molecular Ecology},
year = {2012},
volume = {22},
number = {2},
pages = {354--367},
month = dec
}
@article{CluttonBrock:2007jk,
author = {Clutton-Brock, T},
title = {{Sexual Selection in Males and Females}},
journal = {Science (New York, NY)},
year = {2007},
volume = {318},
number = {5858},
pages = {1882--1885},
month = dec
}
@article{Allington:2012cf,
author = {Allington, Ginger R H and Allington, Ginger R H and Koons, David N and Koons, David N and Morgan Ernest, S K and Morgan Ernest, S K and Schutzenhofer, Michele R and Schutzenhofer, Michele R and Valone, Thomas J and Valone, Thomas J},
title = {{Niche opportunities and invasion dynamics in a desert annual community}},
journal = {Ecology Letters},
year = {2012},
pages = {n/a--n/a},
month = nov
}
@article{Sharakhova:2010en,
author = {Sharakhova, Maria V and George, Phillip and Brusentsova, Irina V and Leman, Scotland C and Bailey, Jeffrey A and Smith, Christopher D and Sharakhov, Igor V},
title = {{Genome mapping and characterization of the Anopheles gambiae heterochromatin}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {459}
}
@article{Wang:2009de,
author = {Wang, J and Santure, A W},
title = {{Parentage and Sibship Inference From Multilocus Genotype Data Under Polygamy}},
journal = {Genetics},
year = {2009},
volume = {181},
number = {4},
pages = {1579--1594},
month = apr
}
@article{Guindon:2010gf,
author = {Guindon, St{\'e}phane and Dufayard, Jean-Francois and Lefort, Vincent and Anisimova, Maria and Hordijk, Wim and Gascuel, Olivier},
title = {{New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0}},
journal = {Systematic Biology},
year = {2010},
volume = {59},
number = {3},
pages = {307--321}
}
@article{Anonymous:nSfe2yCc,
title = {{Bayesian estimation of divergence times from large sequence alignments}},
year = {2010},
pages = {1--16},
month = feb
}
@article{Dickinson:2003wv,
author = {Dickinson, JL and Koenig, WD},
title = {{Desperately seeking similarity}},
journal = {Science (New York, NY)},
year = {2003},
volume = {300},
number = {5627},
pages = {1887--1889}
}
@article{CastroPrieto:2011ia,
author = {Castro-Prieto, Aines and Wachter, Bettina and Wachter, Bettina and Melzheimer, Joerg and Melzheimer, Joerg and Thalwitzer, Susanne and Thalwitzer, Susanne and Sommer, Simone},
title = {{Diversity and Evolutionary Patterns of Immune Genes in Free-Ranging Namibian Leopards (Panthera pardus pardus)}},
journal = {Journal of Heredity},
year = {2011},
volume = {102},
number = {6},
pages = {653--665}
}
@article{Jiang:2009dp,
author = {Jiang, R and Tavare, S and Marjoram, P},
title = {{Population Genetic Inference From Resequencing Data}},
journal = {Genetics},
year = {2008},
volume = {181},
number = {1},
pages = {187--197},
month = nov
}
@article{Crowe:2009gs,
author = {Crowe, Susan A and Kleven, Oddmund and Delmore, Kira E and Laskemoen, Terje and Nocera, Joseph J and Lifjeld, Jan T and Robertson, Raleigh J},
title = {{Paternity assurance through frequent copulations in a wild passerine with intense sperm competition}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {1},
pages = {183--187},
month = jan
}
@article{vandeCasteele:2001wy,
author = {van de Casteele, T and Galbusera, P and Matthysen, E},
title = {{A comparison of microsatellite-based pairwise relatedness estimators}},
journal = {Molecular Ecology},
year = {2001},
volume = {10},
number = {6},
pages = {1539--1549}
}
@article{Heijmans:2008js,
author = {Heijmans, B T and Tobi, E W and Stein, A D and Putter, H and Blauw, G J and Susser, E S and Slagboom, P E and Lumey, L H},
title = {{Persistent epigenetic differences associated with prenatal exposure to famine in humans}},
journal = {PNAS},
year = {2008},
volume = {105},
number = {44},
pages = {17046--17049},
month = oct
}
@article{Reinhardt:2009ks,
author = {Reinhardt, Klaus and Naylor, Richard A and Siva-Jothy, Michael T},
title = {{SITUATION EXPLOITATION: HIGHER MALE MATING SUCCESS WHEN FEMALE RESISTANCE IS REDUCED BY FEEDING}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {1},
pages = {29--39},
month = jan
}
@article{BLACKET:2012jv,
author = {BLACKET, M J and ROBIN, C and GOOD, R T and LEE, S F and MILLER, A D},
title = {{Universal primers for fluorescent labelling of PCR fragments-an efficient and cost-effective approach to genotyping by fluorescence.}},
journal = {Molecular Ecology Resources},
year = {2012},
volume = {12},
number = {3},
pages = {456--463},
month = may
}
@article{RollSkjaervo:2009ki,
author = {Roll Skjaervo, Gine and Stokke, Bard G and Roskaft, Eivin},
title = {{The rarity of twins: a result of an evolutionary battle between mothers and daughters{\textemdash}or do they agree?}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {8},
pages = {1133--1140},
month = mar
}
@article{Papa:2008ck,
author = {Papa, Riccardo and Morrison, Clayton M and Walters, James R and Counterman, Brian A and Chen, Rui and Halder, Georg and Ferguson, Laura and Chamberlain, Nicola and ffrench-Constant, Richard and Kapan, Durrell D and Jiggins, Chris D and Reed, Robert D and McMillan, William O},
title = {{Highly conserved gene order and numerous novel repetitive elements in genomic regions linked to wing pattern variation in Heliconius butterflies}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {345},
month = jul
}
@article{Wesseling:2009gy,
author = {Wesseling, Sebastiaan and Koeners, Maarten P and Kantouh, Farid and Joles, Jaap A and Braam, Branko},
title = {{Consequences of perinatal treatment with l-arginine and antioxidants for the renal transcriptome in spontaneously hypertensive rats}},
journal = {Pfl{\"u}gers Archiv - European Journal of Physiology},
year = {2009},
volume = {458},
number = {3},
pages = {513--524},
month = feb
}
@article{Fitzpatrick:2009fu,
author = {Fitzpatrick, Sarah W and Brasileiro, Cinthia A and Haddad, C{\'e}lio F B and Zamudio, Kelly R},
title = {{Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {13},
pages = {2877--2896},
month = jul
}
@article{Clark:2006kh,
author = {Clark, Mertice M and Stiver, Kelly and Teall, Tanya and Galef, Jr., Bennett G},
title = {{Nursing one litter of Mongolian gerbils while pregnant with another: effects on daughters' mate attachment and fecundity}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
number = {1},
pages = {235--241},
month = jan
}
@article{Johnson:2002tm,
author = {Johnson, LS and Hicks, BG and Hicks, BG and Masters, BS and Masters, BS},
title = {{Increased cuckoldry as a cost of breeding late for male house wrens (Troglodytes aedon)}},
journal = {Behavioral Ecology},
year = {2002},
volume = {13},
number = {5},
pages = {670--675}
}
@article{Hammer:2008iu,
author = {Hammer, Michael F and Mendez, Fernando L and Cox, Murray P and Woerner, August E and Wall, Jeffrey D},
title = {{Sex-Biased Evolutionary Forces Shape Genomic Patterns of Human Diversity}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {9},
pages = {e1000202},
month = sep
}
@article{SchulteHostedde:2004bu,
author = {Schulte-Hostedde, AI and Schulte-Hostedde, AI and Millar, JS and Gibbs, HL},
title = {{Sexual selection and mating patterns in a mammal with female-biased sexual size dimorphism}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {2},
pages = {351--356}
}
@article{Bateson:2005ek,
author = {Bateson, Melissa and Healy, Susan D},
title = {{Comparative evaluation and its implications for mate choice}},
journal = {Trends In Ecology {\&} Evolution},
year = {2005},
volume = {20},
number = {12},
pages = {659--664},
month = dec
}
@article{Liu:2009cg,
author = {Liu, Shuo and Ji, Kang and Chen, Jiming and Tai, Di and Jiang, Wenming and Hou, Guangyu and Chen, Jie and Li, Jinping and Huang, Baoxu and Field, Dawn},
title = {{Panorama Phylogenetic Diversity and Distribution of Type A Influenza Virus}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {3},
pages = {e5022},
month = mar
}
@article{Shah:2010bs,
author = {Shah, Nilay and Sukumar, Saraswati},
title = {{The Hox genes and their roles in oncogenesis}},
journal = {Nature Reviews Cancer},
year = {2010},
volume = {10},
number = {5},
pages = {361--371},
month = apr
}
@article{Cloonan:2008ge,
author = {Cloonan, Nicole and Forrest, Alistair R R and Kolle, Gabriel and Gardiner, Brooke B A and Faulkner, Geoffrey J and Brown, Mellissa K and Taylor, Darrin F and Steptoe, Anita L and Wani, Shivangi and Bethel, Graeme and Robertson, Alan J and Perkins, andrew C and Bruce, Stephen J and Lee, Clarence C and Ranade, Swati S and Peckham, Heather E and Manning, Jonathan M and McKernan, Kevin J and Grimmond, Sean M},
title = {{Stem cell transcriptome profiling via massive-scale mRNA sequencing}},
journal = {Nature Methods},
year = {2008},
volume = {5},
number = {7},
pages = {613--619},
month = may
}
@article{Witkin:2007kn,
author = {Witkin, Steven S and Linhares, Iara Moreno and Giraldo, Paulo},
title = {{Bacterial flora of the female genital tract: function and immune regulation}},
journal = {Best Practice {\&} Research Clinical Obstetrics {\&} Gynaecology},
year = {2007},
volume = {21},
number = {3},
pages = {347--354},
month = jun
}
@article{PARKER:1990tp,
author = {Parker, GA and Simmons, LW and KIRK, H and KIRK, H},
title = {{ANALYZING SPERM COMPETITION DATA - SIMPLE-MODELS FOR PREDICTING MECHANISMS}},
journal = {Behavioral Ecology and Sociobiology},
year = {1990},
volume = {27},
number = {1},
pages = {55--65}
}
@article{Webster:2008fw,
author = {Webster, M.S. and Varian, C W and Karubian, J},
title = {{Plumage color and reproduction in the red-backed fairy-wren: Why be a dull breeder?}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {3},
pages = {517--524},
month = jan
}
@article{Poon:2009dy,
author = {Poon, A F Y and Swenson, L C and Dong, W W Y and Deng, W and Kosakovsky Pond, S L and Brumme, Z L and Mullins, J I and Richman, D D and Harrigan, P R and Frost, S D W},
title = {{Phylogenetic Analysis of Population-Based and Deep Sequencing Data to Identify Coevolving Sites in the nef Gene of HIV-1}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {4},
pages = {819--832},
month = mar
}
@article{Margulies:2000vf,
author = {Margulies, EH and Innis, JW},
title = {{eSAGE: managing and analysing data generated with Serial Analysis of Gene Expression (SAGE)}},
journal = {Bioinformatics (Oxford, England)},
year = {2000},
volume = {16},
number = {7},
pages = {650--651}
}
@article{Liang:2012iv,
author = {Liang, Z S and Liang, Z S and Nguyen, T and Mattila, H R and Mattila, H R and Rodriguez-Zas, S L and Seeley, T D and Seeley, T D and Robinson, G E},
title = {{Molecular Determinants of Scouting Behavior in Honey Bees}},
journal = {Science (New York, NY)},
year = {2012},
volume = {335},
number = {6073},
pages = {1225--1228},
month = mar
}
@article{Anonymous:2012dn,
author = {Murphy, Daniel N and McLysaght, Aoife},
title = {{De Novo Origin of Protein-Coding Genes in Murine Rodents}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {11},
pages = {e48650},
month = nov
}
@article{Xu:2008fv,
author = {Xu, Shixia and Chen, Bingyao and Zhou, Kaiya and Yang, Guang},
title = {{High similarity at three MHC loci between the baiji and finless porpoise: Trans-species or convergent evolution?}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2008},
volume = {47},
number = {1},
pages = {36--44},
month = apr
}
@article{Hiatt:2010cs,
author = {Hiatt, Joseph B and Patwardhan, Rupali P and Patwardhan, Rupali P and Turner, Emily H and Lee, Choli and Shendure, Jay},
title = {{Parallel, tag-directed assembly of locally derived short sequence reads.}},
journal = {Nature Methods},
year = {2010},
volume = {7},
number = {2},
pages = {119--122},
month = feb
}
@article{Lack:2010gv,
author = {Lack, Justin B and Pfau, Russell S and Wilson, Gregory M},
title = {{Demographic history and incomplete lineage sorting obscure population genetic structure of the Texas mouse (\textit{Peromyscus} attwateri)}},
journal = {Journal of Mammalogy},
year = {2010},
volume = {91},
number = {2},
pages = {314--325},
month = apr
}
@article{HuertaSanchez:2014ck,
author = {Huerta-S{\'a}nchez, Emilia and Jin, Xin and Asan and Bianba, Zhuoma and Peter, Benjamin M and Vinckenbosch, Nicolas and Liang, Yu and Yi, Xin and He, Mingze and Somel, Mehmet and Ni, Peixiang and Wang, Bo and Ou, Xiaohua and Huasang and Luosang, Jiangbai and Cuo, Zha Xi Ping and Li, Kui and Gao, Guoyi and Yin, Ye and Wang, Wei and Zhang, Xiuqing and Xu, Xun and Yang, Huanming and Li, Yingrui and Wang, Jian and Wang, Jun and Nielsen, Rasmus},
title = {{Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA}},
journal = {Nature},
year = {2014},
pages = {1--17},
month = jul
}
@article{Jorde:2007ej,
author = {Jorde, P E and Ryman, N},
title = {{Unbiased Estimator for Genetic Drift and Effective Population Size}},
journal = {Genetics},
year = {2007},
volume = {177},
number = {2},
pages = {927--935},
month = aug
}
@article{Kryazhimskiy:2008hq,
author = {Kryazhimskiy, Sergey and Plotkin, Joshua B},
title = {{The Population Genetics of dN/dS}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {12},
pages = {e1000304},
month = dec
}
@article{Prychitko:1997wr,
author = {Prychitko, TM and Prychitko, TM and Moore, WS and Moore, WS},
title = {{The utility of DNA sequences of an intron from the beta-fibrinogen gene in phylogenetic analysis of woodpeckers (Aves: Picidae)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {1997},
volume = {8},
number = {2},
pages = {193--204}
}
@article{Casci:2010cx,
author = {Casci, Tanita},
title = {{Population genetics: SNPs that come in threes}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {11},
number = {1},
pages = {8--8},
month = dec
}
@article{Zhao:2005ku,
author = {Zhao, Sheng and Fernald, Russell D},
title = {{Comprehensive algorithm for quantitative real-time polymerase chain reaction.}},
journal = {Journal of computational biology : a journal of computational molecular cell biology},
year = {2005},
volume = {12},
number = {8},
pages = {1047--1064},
month = oct
}
@article{Shaw:2009kb,
author = {Shaw, K L and Lesnick, S C},
title = {{Genomic linkage of male song and female acoustic preference QTL underlying a rapid species radiation}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {24},
pages = {9737--9742},
month = jun
}
@article{Balcazar:2010eh,
author = {Balc{\'a}zar, Jos{\'e} L and Lee, Natuschka M and Pintado, Jos{\'e} and Planas, Miquel},
title = {{Phylogenetic characterization and in situ detection of bacterial communities associated with seahorses (Hippocampus guttulatus) in captivity}},
journal = {Systematic and applied microbiology},
year = {2010},
volume = {33},
number = {2},
pages = {71--77},
month = mar
}
@article{Parks:2010et,
author = {Parks, D H and Beiko, R G},
title = {{Identifying biologically relevant differences between metagenomic communities}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {6},
pages = {715--721},
month = mar
}
@article{Sorek:2008jv,
author = {Sorek, Rotem and Kunin, Victor and Hugenholtz, Philip},
title = {{CRISPR {\textemdash} a widespread system that provides acquired resistance against phages in bacteria and archaea}},
journal = {Nature Reviews Microbiology},
year = {2008},
volume = {6},
number = {3},
pages = {181--186},
month = mar
}
@article{Yang:2008dd,
author = {Yang, Ziheng and Nielsen, Rasmus},
title = {{Mutation-selection models of codon substitution and their use to estimate selective strengths on codon usage.}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {3},
pages = {568--579},
month = mar
}
@article{Pravosudov:2012faa,
author = {Pravosudov, V V and Pravosudov, V V and Roth, II, T C and Roth, II, T C and Forister, M L and Forister, M L and LaDage, L D and LaDage, L D and Kramer, R and Kramer, R and Schilkey, F and Schilkey, F and van der Linden, A M and van der Linden, A M},
title = {{Differential hippocampal gene expression is associated with climate-related natural variation in memory and the hippocampus in food-caching chickadees}},
journal = {Molecular Ecology},
year = {2012},
volume = {22},
number = {2},
pages = {397--408},
month = dec
}
@article{Hershkovitz:2013cp,
author = {Hershkovitz, Vera and Hershkovitz, Vera and Sela, Noa and Sela, Noa and Taha-Salaime, Leena and Taha-Salaime, Leena and Liu, Jia and Liu, Jia and Rafael, Ginat and Rafael, Ginat and Kessler, Clarita and Kessler, Clarita and Aly, Radi and Aly, Radi and Levy, Maggie and Levy, Maggie and Wisniewski, Michael and Wisniewski, Michael and Droby, Samir and Droby, Samir},
title = {{De-novo assembly and characterization of the transcriptome of Metschnikowia fructicola reveals differences in gene expression following interaction with Penicillium digitatum and grapefruit peel}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {168}
}
@article{Anonymous:2010fj,
author = {Eizirik, Eduardo and Murphy, William J and Koepfli, Klaus-Peter and Johnson, Warren E and Dragoo, Jerry W and Wayne, Robert K and O'brien, Stephen J},
title = {{Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2010},
volume = {56},
number = {1},
pages = {49--63},
month = jul
}
@article{Hong:2008ix,
author = {Hong, Joung-Woo and Hong, Joung-Woo and Hendrix, David A and Hendrix, David A and Levine, Michael S and Levine, Michael S},
title = {{Shadow enhancers as a source of evolutionary novelty.}},
journal = {Science (New York, NY)},
year = {2008},
volume = {321},
number = {5894},
pages = {1314},
month = sep
}
@article{Schwensow:2008ec,
author = {Schwensow, N and Eberle, M and Sommer, S},
title = {{Compatibility counts: MHC-associated mate choice in a wild promiscuous primate}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1634},
pages = {555--564},
month = mar
}
@article{Frentiu:2008ja,
author = {Frentiu, Francesca D and Chenoweth, Stephen F},
title = {{Polyandry and paternity skew in natural and experimental populations of \textit{Drosophila} serrata}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {6},
pages = {1589--1596},
month = mar
}
@article{Goncalves:2009vw,
author = {Goncalves, Gislene L and de Freitas, Thales R O},
title = {{INTRASPECIFIC VARIATION AND GENETIC DIFFERENTIATION OF THE COLLARED TUCO-TUCO (CTENOMYS TORQUATUS) IN SOUTHERN BRAZIL}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {4},
pages = {1020--1031}
}
@article{Marra:2014de,
author = {Marra, Nicholas J and Romero, andrea and DeWoody, J andrew},
title = {{Natural selection and the genetic basis of osmoregulation in heteromyid rodents as revealed by RNA-seq}},
journal = {Molecular Ecology},
year = {2014},
volume = {23},
number = {11},
pages = {2699--2711},
month = may
}
@article{Willing:2010ge,
author = {Willing, Eva-Maria and Bentzen, Paul and van Oosterhout, Cock and Hoffmann, Margarete and Cable, Joanne and Breden, Felix and Weigel, Detlef and Dreyer, Christine},
title = {{Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {5},
pages = {968--984},
month = mar
}
@article{Futschik:2010be,
author = {Futschik, A and Schlotterer, C},
title = {{The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {1},
pages = {207--218},
month = sep
}
@article{Tarvin:2005do,
author = {Tarvin, Keith A and Webster, Michael S and Tuttle, Elaina M and Pruett-Jones, Stephen},
title = {{Genetic similarity of social mates predicts the level of extrapair paternity in splendid fairy-wrens}},
journal = {Animal Behaviour},
year = {2005},
volume = {70},
number = {4},
pages = {945--955},
month = oct
}
@article{Bondinas:2007di,
author = {Bondinas, George P and Bondinas, George P and Moustakas, Antonis K and Moustakas, Antonis K and Papadopoulos, George K and Papadopoulos, George K},
title = {{The spectrum of HLA-DQ and HLA-DR alleles, 2006: a listing correlating sequence and structure with function}},
journal = {Immunogenetics},
year = {2007},
volume = {59},
number = {7},
pages = {539--553}
}
@article{Kottgen:2010kf,
author = {K{\"o}ttgen, Anna},
title = {{Genome-Wide Association Studies in Nephrology Research}},
journal = {American Journal of Kidney Diseases},
year = {2010},
volume = {56},
number = {4},
pages = {743--758},
month = oct
}
@article{Meunier:2001vb,
author = {Meunier, J and Meunier, J and Eyre-Walker, A},
title = {{The correlation between linkage disequilibrium and distance: implications for recombination in hominid mitochondria.}},
journal = {Molecular Biology and Evolution},
year = {2001},
volume = {18},
number = {11},
pages = {2132--2135},
month = nov
}
@article{Esslinger:2009ce,
author = {Esslinger, C and Walter, H and Kirsch, P and Erk, S and Schnell, K and Arnold, C and Haddad, L and Mier, D and Opitz von Boberfeld, C and Raab, K and Witt, S H and Rietschel, M and Cichon, S and Meyer-Lindenberg, A},
title = {{Neural Mechanisms of a Genome-Wide Supported Psychosis Variant}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5927},
pages = {605--605},
month = apr
}
@article{Lewitter:2009gn,
author = {Lewitter, Fran and Rebhan, Michael},
title = {{Establishing a Successful Bioinformatics Core Facility Team}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {6},
pages = {e1000368},
month = jun
}
@article{KosakovskyPond:2008il,
author = {Kosakovsky Pond, S L and Poon, A F Y and Z{\'a}rate, S and Smith, D M and Little, S J and Pillai, S K and Ellis, R J and Wong, J K and Leigh Brown, A J and Richman, D D and Frost, S D W},
title = {{Estimating selection pressures on HIV-1 using phylogenetic likelihood models}},
journal = {Statistics in Medicine},
year = {2008},
volume = {27},
number = {23},
pages = {4779--4789},
month = oct
}
@article{Say:2003tc,
author = {Say, L and Naulty, F and Hayden, TJ},
title = {{Genetic and behavioural estimates of reproductive skew in male fallow deer}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {10},
pages = {2793--2800}
}
@article{Tenesa:2007iv,
author = {Tenesa, A and Navarro, P and Hayes, B J and Duffy, D L and Clarke, G M and Goddard, M E and Visscher, P M},
title = {{Recent human effective population size estimated from linkage disequilibrium}},
journal = {Genome Research},
year = {2007},
volume = {17},
number = {4},
pages = {520--526},
month = mar
}
@article{Cuiv:2011bt,
author = {Cuiv, Paraic O and Cuiv, Paraic O and de Carcer, Daniel Aguirre and de Carcer, Daniel Aguirre and Jones, Michelle and Jones, Michelle and Klaassens, Eline S and Klaassens, Eline S and Worthley, Daniel L and Worthley, Daniel L and Whitehall, Vicki L J and Whitehall, Vicki L J and Kang, Seungha and Kang, Seungha and McSweeney, Christopher S and McSweeney, Christopher S and Leggett, Barbara A and Leggett, Barbara A and Morrison, Mark and Morrison, Mark},
title = {{The Effects from DNA Extraction Methods on the Evaluation of Microbial Diversity Associated with Human Colonic Tissue}},
journal = {Microbial Ecology},
year = {2011},
volume = {61},
number = {2},
pages = {353--362}
}
@article{Nielsen:2013ws,
author = {{Nielsen}},
title = {{Inferring Demographic History from a Spectrum of Shared Haplotype Lengths}},
year = {2013},
pages = {1--20},
month = may
}
@article{Nadeau:2010dz,
author = {Nadeau, Nicola J and Jiggins, Chris D},
title = {{A golden age for evolutionary genetics? Genomic studies of adaptation in natural populations}},
journal = {Trends In Genetics},
year = {2010},
volume = {26},
number = {11},
pages = {484--492},
month = nov
}
@article{Johnston:2005ef,
author = {Johnston, D S},
title = {{The Mouse Epididymal Transcriptome: Transcriptional Profiling of Segmental Gene Expression in the Epididymis}},
journal = {Biology of Reproduction},
year = {2005},
volume = {73},
number = {3},
pages = {404--413},
month = sep
}
@article{Immler:2007er,
author = {Immler, S and Birkhead, T R},
title = {{Sperm competition and sperm midpiece size: no consistent pattern in passerine birds}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1609},
pages = {561--568},
month = feb
}
@article{GarciaGonzalez:2008gw,
author = {Garca-Gonzlez, Francisco},
title = {{MALE GENETIC QUALITY AND THE INEQUALITY BETWEEN PATERNITY SUCCESS AND FERTILIZATION SUCCESS: CONSEQUENCES FOR STUDIES OF SPERM COMPETITION AND THE EVOLUTION OF POLYANDRY}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {7},
pages = {1653--1665},
month = jul
}
@article{Husby:2011jh,
author = {Husby, A and Ekblom, R and Qvarnstrom, A},
title = {{Let's talk turkey: immune competence in domestic and wild fowl.}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {2},
pages = {103--104},
month = aug
}
@article{HOFFMAN:2000gc,
author = {HOFFMAN, E},
title = {{A review of colour and pattern polymorphisms in anurans}},
journal = {Biological Journal of The Linnean Society},
year = {2000},
volume = {70},
number = {4},
pages = {633--665},
month = aug
}
@article{Teacher:2009eh,
author = {Teacher, Amber G F and Garner, Trenton W J and Nichols, Richard A},
title = {{Population genetic patterns suggest a behavioural change in wild common frogs ( Rana temporaria) following disease outbreaks ( Ranavirus)}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {15},
pages = {3163--3172},
month = aug
}
@article{Krueger:2012ks,
author = {Krueger, Felix and Kreck, Benjamin and Franke, andre and andrews, Simon R},
title = {{DNA methylome analysis using short bisulfite sequencing data}},
journal = {Nature Methods},
year = {2012},
volume = {9},
number = {2},
pages = {145--151},
month = jan
}
@article{Wan:2012cz,
author = {Wan, Raymond and Anh, Vo Ngoc and Asai, Kiyoshi},
title = {{Transformations for the compression of FASTQ quality scores of next-generation sequencing data.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {5},
pages = {628--635},
month = mar
}
@article{Parmakelis:2010hx,
author = {Parmakelis, Aristeidis and Parmakelis, Aristeidis and Moustaka, Marina and Moustaka, Marina and Poulakakis, Nikolaos and Poulakakis, Nikolaos and Louis, Christos and Louis, Christos and Slotman, Michel A and Slotman, Michel A and Marshall, Jonathon C and Marshall, Jonathon C and Awono-Ambene, Parfait H and Awono-Ambene, Parfait H and Antonio-Nkondjio, Christophe and Antonio-Nkondjio, Christophe and Simard, Frederic and Caccone, Adalgisa and Caccone, Adalgisa and Powell, Jeffrey R},
title = {{Anopheles Immune Genes and Amino Acid Sites Evolving Under the Effect of Positive Selection}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {1}
}
@article{He:2009wj,
author = {He, Lei and Vasiliou, Konstandinos and Nebert, Daniel W},
title = {{Analysis and update of the human solute carrier (SLC) gene superfamily.}},
journal = {Human genomics},
year = {2009},
volume = {3},
number = {2},
pages = {195--206},
month = jan
}
@article{Chen:2009ws,
author = {Chen, G},
title = {{DNA sequencing and short reads assembly}},
journal = {dspace.ruc.dk},
year = {2009}
}
@article{MaldonadoContreras:2011dg,
author = {Maldonado-Contreras, Ana and Maldonado-Contreras, Ana and Goldfarb, Kate C and Goldfarb, Kate C and Godoy-Vitorino, Filipa and Godoy-Vitorino, Filipa and Karaoz, Ulas and Karaoz, Ulas and Contreras, M{\'o}nica and Contreras, M{\'o}nica and Blaser, Martin J and Blaser, Martin J and Brodie, Eoin L and Dominguez-Bello, Maria G and Dominguez-Bello, Maria G},
title = {{Structure of the human gastric bacterial community in relation to Helicobacter pylori status.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {4},
pages = {574--579},
month = apr
}
@article{Humphries:2008cr,
author = {Humphries, Stuart and Evans, Jonathan P and Simmons, Leigh W},
title = {{Sperm competition: linking form to function}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {319}
}
@article{Mitsunaga:2005th,
author = {Mitsunaga, TM and Powell, AM and Heard, NJ and Larsen, UM},
title = {{Extramarital sex among Nigerian men - Polygyny and other risk factors}},
journal = {Jaids-Journal of Acquired Immune Deficiency Syndromes},
year = {2005},
volume = {39},
number = {4},
pages = {478--488}
}
@article{Braendle:2005fy,
author = {Braendle, C and Friebe, I and Caillaud, M C and Stern, D L},
title = {{Genetic variation for an aphid wing polyphenism is genetically linked to a naturally occurring wing polymorphism}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2005},
volume = {272},
number = {1563},
pages = {657--664},
month = mar
}
@article{Jcook:2009ty,
author = {Jcook and Jcook},
title = {{Science Express Logo Report}},
year = {2009},
pages = {1--14},
month = apr
}
@article{Toleno:2010dr,
author = {Toleno, Donna M. and Toleno, Donna M. and Durbin, Mary L. and Durbin, Mary L. and Lundy, Karen E. and Lundy, Karen E. and Clegg, Michael T. and Clegg, Michael T.},
title = {{Extensive evolutionary rate variation in floral color determining genes in the genus Ipomoea}},
journal = {Plant Species Biology},
year = {2010},
volume = {25},
number = {1},
pages = {30--42}
}
@article{Kumar:2008jg,
author = {Kumar, S and NEI, M and Dudley, J and Tamura, K},
title = {{MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences}},
journal = {Briefings In Bioinformatics},
year = {2008},
volume = {9},
number = {4},
pages = {299--306},
month = mar
}
@article{Mila:2010hu,
author = {Mila, Borja and Carranza, Salvador and Guillaume, Olivier and Clobert, Jean},
title = {{Marked genetic structuring and extreme dispersal limitation in the Pyrenean brook newt Calotriton asper(Amphibia: Salamandridae) revealed by genome-wide AFLP but not mtDNA}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {1},
pages = {108--120},
month = jan
}
@article{Zhang:2006hc,
author = {Zhang, Y X and Chen, S L and Liu, Y G and Sha, Z X and Liu, Z J},
title = {{Major Histocompatibility Complex Class IIB Allele Polymorphism and Its Association with Resistance/Susceptibility to Vibrio anguillarum in Japanese Flounder (Paralichthys olivaceus)}},
journal = {Marine Biotechnology},
year = {2006},
volume = {8},
number = {6},
pages = {600--610},
month = jul
}
@article{Mulder:1997vd,
author = {Mulder, RA},
title = {{Extra-group courtship displays and other reproductive tactics of superb fairy-wrens}},
journal = {Australian Journal of Zoology},
year = {1997},
volume = {45},
number = {2},
pages = {131--143}
}
@article{Gubernick:2000wk,
author = {Gubernick, David J and Teferi, Taye},
title = {{Adaptive significance of male parental care in a monogamous mammal}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1439},
pages = {147--150}
}
@book{Mayr:1942tx,
author = {Mayr, E},
title = {{Systematics and the Origin of Species}},
publisher = {Columbia University Press},
year = {1942},
address = {New York}
}
@article{Mirmonsef:2010jh,
author = {Mirmonsef, Paria and Mirmonsef, Paria and Gilbert, Douglas and Gilbert, Douglas and Zariffard, Mohammad R and Zariffard, Mohammad R and Hamaker, Bruce R and Hamaker, Bruce R and Kaur, Amandeep and Kaur, Amandeep and Landay, Alan L and Landay, Alan L and Spear, Greg T and Spear, Greg T},
title = {{The Effects of Commensal Bacteria on Innate Immune Responses in the Female Genital Tract}},
journal = {American Journal of Reproductive Immunology},
year = {2010},
volume = {65},
number = {3},
pages = {190--195},
month = dec
}
@article{Lacey:2003ww,
author = {Lacey, EA and Wieczorek, JR},
title = {{Ecology of sociality in rodents: A ctenomyid perspective}},
journal = {Journal of Mammalogy},
year = {2003},
volume = {84},
number = {4},
pages = {1198--1211}
}
@article{Main:2009hu,
author = {Main, Bradley J and Bickel, Ryan D and McIntyre, Lauren M and Graze, Rita M and Calabrese, Peter P and Nuzhdin, Sergey V},
title = {{Allele-specific expression assays using Solexa}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {422}
}
@article{Bradley:2004uf,
author = {Bradley, RD and Edwards, CW and Carroll, DS and Kilpatrick, CW},
title = {{Phylogenetic relationships of neotomine peromyscine rodents: Based on DNA sequences from the mitochondrial cytochrome-b gene}},
journal = {Journal of Mammalogy},
year = {2004},
volume = {85},
number = {3},
pages = {389--395}
}
@article{Hegyi:2009jo,
author = {Hegyi, G and Moller, A P and Eens, M and Garamszegi, L Z},
title = {{Prevalence of avian influenza and sexual selection in ducks}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {6},
pages = {1289--1294},
month = nov
}
@article{Sakaluk:1997vy,
author = {Sakaluk, SK},
title = {{Cryptic female choice predicated on wing dimorphism in decorated crickets}},
journal = {Behavioral Ecology},
year = {1997},
volume = {8},
number = {3},
pages = {326--331}
}
@article{Clark:2004gr,
author = {CLARKE, J R and ANDERSON, T J C and Bandi, C},
title = {{Sexual transmission of a nematode parasite of Wood Mice (Apodemus sylvaticus)?}},
journal = {Parasitology},
year = {1999},
volume = {128},
number = {5},
pages = {561--568}
}
@article{Costello:2009im,
author = {Costello, Elizabeth K and Lauber, Christian L and Lauber, Christian L and Hamady, Micah and Fierer, Noah and Fierer, Noah and Gordon, Jeffrey I and Knight, Rob},
title = {{Bacterial community variation in human body habitats across space and time.}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5960},
pages = {1694--1697},
month = dec
}
@article{EBERHARD:1975vj,
author = {{EBERHARD, MJW}},
title = {{EVOLUTION OF SOCIAL-BEHAVIOR BY KIN SELECTION}},
journal = {Quarterly Review of Biology},
year = {1975},
volume = {50},
number = {1},
pages = {1--33}
}
@article{Yeh:2012kr,
author = {Yeh, Shu-Dan and Yeh, Shu-Dan and Do, Tiffanie and Do, Tiffanie and Chan, Carolus and Chan, Carolus and Cordova, Adriana and Cordova, Adriana and Carranza, Francisco and Carranza, Francisco and Yamamoto, Eugene A and Yamamoto, Eugene A and Abbassi, Mashya and Abbassi, Mashya and Gandasetiawan, Kania A and Gandasetiawan, Kania A and Librado, Pablo and Librado, Pablo and Damia, Elisabetta and Damia, Elisabetta and Dimitri, Patrizio and Dimitri, Patrizio and Rozas, Julio and Hartl, Daniel L and Roote, John and Roote, John and Ranz, Jos{\'e} M},
title = {{Functional evidence that a recently evolved \textit{Drosophila} sperm-specific gene boosts sperm competition.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {6},
pages = {2043--2048},
month = feb
}
@article{Bergeron:2012kg,
author = {Bergeron, Patrick and Bergeron, Patrick and Montiglio, Pierre-Olivier and Montiglio, Pierre-Olivier and R{\'e}ale, Denis and Humphries, Murray M and Humphries, Murray M and Garant, Dany and Garant, Dany},
title = {{Bateman gradients in a promiscuous mating system}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
month = may
}
@article{Haselkorn:2012gc,
author = {Haselkorn, Tamara S and Haselkorn, Tamara S and Cockburn, Sarah N and Cockburn, Sarah N and Hamilton, Phineas T and Hamilton, Phineas T and Perlman, Steve J and Perlman, Steve J and Jaenike, John and Jaenike, John},
title = {{INFECTIOUS ADAPTATION: POTENTIAL HOST RANGE OF A DEFENSIVE ENDOSYMBIONT IN DROSOPHILA}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = dec
}
@article{Johannes:2010du,
author = {Johannes, F and Wardenaar, R and Colome-Tatche, M and Mousson, F and de Graaf, P and Mokry, M and Guryev, V and Timmers, H T M and Cuppen, E and Jansen, R C},
title = {{Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {8},
pages = {1000--1006},
month = apr
}
@article{ONeill:2007ck,
author = {O'Neill, Michael J and Lawton, Betty R. and Lawton, Betty R. and Mateos, Mariana and Mateos, Mariana and Carone, Dawn M. and Carone, Dawn M. and Ferreri, Gianni C. and Ferreri, Gianni C. and Hrbek, Tomas and Hrbek, Tomas and Meredith, Robert W. and Meredith, Robert W. and Reznick, David N. and O'Neill, Rachel J},
title = {{Ancient and continuing Darwinian selection on insulin-like growth factor II in placental fishes}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2007},
volume = {104},
number = {30},
pages = {12404--12409}
}
@article{Jiggins:2003go,
author = {Jiggins, Francis M and Hurst, Gregory D D},
title = {{The Evolution of Parasite Recognition Genes in the Innate Immune System: Purifying Selection on \textit{Drosophila} \textit{melanogaster} Peptidoglycan Recognition Proteins}},
journal = {Journal of Molecular Evolution},
year = {2003},
volume = {57},
number = {5},
pages = {598--605},
month = sep
}
@article{Edward:2011ee,
author = {Edward, Dominic A and Edward, Dominic A and Chapman, Tracey},
title = {{The evolution and significance of male mate choice}},
journal = {Trends In Ecology {\&} Evolution},
year = {2011},
pages = {1--8},
month = sep
}
@article{Edgar:2004bo,
author = {Edgar, Robert C and Edgar, Robert C},
title = {{MUSCLE: multiple sequence alignment with high accuracy and high throughput.}},
journal = {Nucleic Acids Research},
year = {2004},
volume = {32},
number = {5},
pages = {1792--1797}
}
@article{Kokko:2012kl,
author = {Kokko, Hanna and Klug, Hope and Klug, Hope and Jennions, Michael D and Gaillard, Jean-Michel and Gaillard, Jean-Michel},
title = {{Unifying cornerstones of sexual selection: operational sex ratio, Bateman gradient and the scope for competitive investment.}},
journal = {Ecology Letters},
year = {2012},
month = aug
}
@article{Mansingh:1975hm,
author = {Mansingh, A and Steele, R W},
title = {{Effects of farnesyl methyl ether on the haemolymph and ovarian proteins of the tent caterpillar, \textit{Malacosoma} \textit{americanum}}},
journal = {Journal of Insect Physiology},
year = {1975},
volume = {21},
number = {4},
pages = {733--740},
month = apr
}
@article{Peterson:2009br,
author = {Peterson, G I and Masel, J},
title = {{Quantitative Prediction of Molecular Clock and Ka/Ks at Short Timescales}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {11},
pages = {2595--2603},
month = oct
}
@article{Immonen:2012dt,
author = {Immonen, E and Ritchie, M G},
title = {{The genomic response to courtship song stimulation in female \textit{Drosophila} \textit{melanogaster}}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1732},
pages = {1359--1365},
month = feb
}
@article{Walling:2008ev,
author = {Walling, C A and Stamper, C E and Smiseth, P T and Moore, A J},
title = {{The quantitative genetics of sex differences in parenting}},
journal = {PNAS},
year = {2008},
volume = {105},
number = {47},
pages = {18430--18435},
month = nov
}
@article{McGraw:2012hl,
author = {McGraw, Lisa A and Davis, Jamie K and Davis, Jamie K and Thomas, Pamela J and Thomas, Pamela J and {NISC Comparative Sequencing Program} and {NISC Comparative Sequencing Program} and Young, Larry J and Thomas, James W and Thomas, James W},
title = {{BAC-Based Sequencing of Behaviorally-Relevant Genes in the Prairie Vole}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e29345},
month = jan
}
@article{Kershenbaum:2012gs,
author = {Kershenbaum, Arik and Ilany, Amiyaal and Blaustein, Leon and Geffen, Eli},
title = {{Syntactic structure and geographical dialects in the songs of male rock hyraxes.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
month = apr
}
@article{SchmidtNielsen:1952wp,
author = {Schmidt-Nielsen, B},
title = {{Renal Tubular Excretion of Urea in Kangaroo Rats}},
journal = {American Journal of Physiology},
year = {1952},
volume = {170},
number = {1},
pages = {45--56}
}
@article{Anonymous:ibMHVYuY,
title = {{Biometrics 1986 SEBER}},
year = {2005},
pages = {27},
month = feb
}
@article{Emerson:2010cz,
author = {Emerson, K J and Merz, C R and Catchen, J M and Hohenlohe, P A and Cresko, W A and Bradshaw, W E and Holzapfel, C M},
title = {{Resolving postglacial phylogeography using high-throughput sequencing}},
journal = {PNAS},
year = {2010},
volume = {107},
number = {37},
pages = {16196--16200},
month = sep
}
@article{Barrangou:2007bo,
author = {Barrangou, R and Fremaux, C and Deveau, H and Richards, M and Boyaval, P and Moineau, S and Romero, D A and Horvath, P},
title = {{CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes}},
journal = {Science (New York, NY)},
year = {2007},
volume = {315},
number = {5819},
pages = {1709--1712},
month = mar
}
@article{Heimeier:2006ej,
author = {Heimeier, Rachel A and Heimeier, Rachel A and Donald, John A},
title = {{The response of the natriuretic peptide system to water deprivation in the desert rodent, \textit{Notomys alexis}}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2006},
volume = {143},
number = {2},
pages = {193--201},
month = feb
}
@article{Hagelin:2003in,
author = {Hagelin, J C and Jones, I L and Rasmussen, L E L},
title = {{A tangerine-scented social odour in a monogamous seabird}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2003},
volume = {270},
number = {1522},
pages = {1323--1329},
month = jul
}
@article{Meglecz:2010kn,
author = {Meglecz, E and Costedoat, C and Dubut, V and Gilles, A and Malausa, T and Pech, N and Martin, J F},
title = {{QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {3},
pages = {403--404},
month = feb
}
@article{KalcounisRueppell:2006de,
author = {Kalcounis-Rueppell, Matina C and Metheny, Jackie D and Vonhof, Maarten J},
title = {{Production of ultrasonic vocalizations by \textit{Peromyscus} mice in the wild.}},
journal = {Frontiers in zoology},
year = {2006},
volume = {3},
pages = {3}
}
@article{Schwanz:2003ww,
author = {Schwanz, LE and Schwanz, LE and Lacey, EA},
title = {{Olfactory discrimination of gender by colonial tuco-tucos (\textit{Ctenomys} \textit{sociabilis})}},
journal = {Mammalian Biology},
year = {2003},
volume = {68},
number = {1},
pages = {53--60}
}
@article{Anisimova:2013fe,
author = {Anisimova, Maria and Liberles, David A and Liberles, David A and Philippe, Herv{\'e} and Provan, Jim and Provan, Jim and Pupko, Tal and Pupko, Tal and von Haeseler, Arndt},
title = {{State-of the art methodologies dictate new standards for phylogenetic analysis}},
journal = {BMC Evolutionary Biology},
year = {2013},
volume = {13},
number = {1},
pages = {161}
}
@article{Ropelewski:2010gb,
author = {Ropelewski, Alexander J and Nicholas, Hugh B and Gonzalez Mendez, Ricardo R},
title = {{MPI-PHYLIP: Parallelizing Computationally Intensive Phylogenetic Analysis Routines for the Analysis of Large Protein Families}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {11},
pages = {e13999},
month = nov
}
@article{Huber:2004bh,
author = {Huber, T and Faulkner, G and Hugenholtz, P},
title = {{Bellerophon: a program to detect chimeric sequences in multiple sequence alignments}},
journal = {Bioinformatics (Oxford, England)},
year = {2004},
volume = {20},
number = {14},
pages = {2317--2319},
month = sep
}
@article{Ka:2009gu,
author = {Ka, S and Lindberg, J and Stromstedt, L and Fitzsimmons, C and Lindqvist, N and Lundeberg, J and Siegel, P B and andersson, L and Hallbook, F},
title = {{Extremely Different Behaviours in High and Low Body Weight Lines of Chicken are Associated with Differential Expression of Genes Involved in Neuronal Plasticity}},
journal = {Journal of Neuroendocrinology},
year = {2009},
volume = {21},
number = {3},
pages = {208--216},
month = mar
}
@article{KosakovskyPond:2005gv,
author = {Kosakovsky Pond, S L},
title = {{Not So Different After All: A Comparison of Methods for Detecting Amino Acid Sites Under Selection}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {22},
number = {5},
pages = {1208--1222},
month = feb
}
@article{Ho:2012cv,
author = {Ho, E K H and Agrawal, A F},
title = {{The effects of competition on the strength and softness of selection}},
journal = {Journal of Evolutionary Biology},
year = {2012},
volume = {25},
number = {12},
pages = {2537--2546},
month = oct
}
@article{Micheletti:2012ca,
author = {Micheletti, Steven and Parra, Eliseo and Routman, Eric J},
title = {{Adaptive Color Polymorphism and Unusually High Local Genetic Diversity in the Side-Blotched Lizard, Uta stansburiana}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {10},
pages = {e47694},
month = oct
}
@article{Shalem:2013dg,
author = {Shalem, O and Sanjana, N E and Hartenian, E and Shi, X and Scott, D A and Mikkelson, T and Heckl, D and Ebert, B L and Root, D E and Doench, J G and Zhang, F},
title = {{Genome-Scale CRISPR-Cas9 Knockout Screening in Human Cells}},
journal = {Science (New York, NY)},
year = {2013},
month = dec
}
@article{SLADE:1993tr,
author = {SLADE, RW and Moritz, C and HEIDEMAN, A and HALE, PT},
title = {{RAPID ASSESSMENT OF SINGLE-COPY NUCLEAR-DNA VARIATION IN DIVERSE SPECIES}},
journal = {Molecular Ecology},
year = {1993},
volume = {2},
number = {6},
pages = {359--373}
}
@article{Waser:2006cd,
author = {Waser, P M and De Woody, J A},
title = {{Multiple paternity in a philopatric rodent: the interaction of competition and choice}},
journal = {Behavioral Ecology},
year = {2006},
volume = {17},
number = {6},
pages = {971--978},
month = sep
}
@article{GomezUchida:2003kw,
author = {Gomez-Uchida, D and Hoffman, E A and Ardren, W R and Banks, M A},
title = {{Microsatellite markers for the heavily exploited canary ( Sebastes pinniger) and other rockfish species}},
journal = {Molecular Ecology Notes},
year = {2003},
volume = {3},
number = {3},
pages = {387--389},
month = sep
}
@article{LIGHTON:1993co,
author = {LIGHTON, JRB and LIGHTON, JRB and GARRIGAN, DA and GARRIGAN, DA and DUNCAN, FD and DUNCAN, FD and JOHNSON, RA and JOHNSON, RA},
title = {{Spiracular Control of Respiratory Water-Loss in Female Alates of the Harvester Ant Pogonomyrmex-Rugosus}},
journal = {The Journal of experimental biology},
year = {1993},
volume = {179},
pages = {233--244}
}
@article{LeComber:2009dz,
author = {Le Comber, S C},
title = {{The genetic code has a {\textquoteleft}shift{\textquoteright} key}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {3},
pages = {189--189},
month = apr
}
@article{Lancaster:2006il,
author = {Lancaster, Jennifer R and Wilson, Paul and Espinoza, Robert E},
title = {{Physiological benefits as precursors of sociality: why banded geckos band}},
journal = {Animal Behaviour},
year = {2006},
volume = {72},
number = {1},
pages = {199--207},
month = jul
}
@article{Gnerre:2011fd,
author = {Gnerre, Sante and Maccallum, Iain and Przybylski, Dariusz and Ribeiro, Filipe J and Burton, Joshua N and Burton, Joshua N and Walker, Bruce J and Walker, Bruce J and Sharpe, Ted and Hall, Giles and Shea, Terrance P and Shea, Terrance P and Sykes, Sean and Sykes, Sean and Berlin, Aaron M and Berlin, Aaron M and Aird, Daniel and Aird, Daniel and Costello, Maura and Costello, Maura and Daza, Riza and Daza, Riza and Williams, Louise and Williams, Louise and Nicol, Robert and Nicol, Robert and Gnirke, andreas and Gnirke, andreas and Nusbaum, Chad and Nusbaum, Chad and Lander, Eric S and Lander, Eric S and Jaffe, David B},
title = {{High-quality draft assemblies of mammalian genomes from massively parallel sequence data.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {4},
pages = {1513--1518},
month = jan
}
@article{Komdeur:2007bj,
author = {Komdeur, J and Burke, T and Richardson, D S},
title = {{Explicit experimental evidence for the effectiveness of proximity as mate-guarding behaviour in reducing extra-pair fertilization in the Seychelles warbler}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {17},
pages = {3679--3688},
month = sep
}
@article{Wright:2006kt,
author = {Wright, Harry William Yorkstone},
title = {{Paternal den attendance is the best predictor of offspring survival in the socially monogamous bat-eared fox}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
number = {3},
pages = {503--510},
month = mar
}
@article{Mullen:2006dn,
author = {Mullen, Lynne M and Hirschmann, Rachel J and Prince, Kelly L and Glenn, Travis C and Dewey, Michael J and Hoekstra, Hopi E},
title = {{Sixty polymorphic microsatellite markers for the oldfield mouse developed in \textit{\textit{Peromyscus} polionotus} and \textit{Peromyscus} \textit{maniculatus}}},
journal = {Molecular Ecology Notes},
year = {2006},
volume = {6},
number = {1},
pages = {36--40},
month = mar
}
@article{Gnerre:2009vr,
author = {Gnerre, S and Lander, E and Lindblad-Toh, K and Jaffe, D},
title = {{Assisted assembly: how to improve a \textit{de novo} genome assembly by using related species}},
journal = {Genome Biology},
year = {2009}
}
@article{Gowaty:1998wy,
author = {Gowaty, PA and Buschhaus, N},
title = {{Ultimate causation of aggressive and forced copulation in birds: Female resistance, the CODE hypothesis, and social monogamy}},
journal = {American Zoologist},
year = {1998},
volume = {38},
number = {1},
pages = {207--225}
}
@article{Yang:2007ki,
author = {Yang, Z},
title = {{PAML 4: Phylogenetic Analysis by Maximum Likelihood}},
journal = {Molecular Biology and Evolution},
year = {2007},
volume = {24},
number = {8},
pages = {1586--1591},
month = apr
}
@article{Autret:2005bc,
author = {Autret, Nicolas and Charbit, Alain},
title = {{Lessons from signature-tagged mutagenesis on the infectious mechanisms of pathogenic bacteria}},
journal = {FEMS Microbiology Reviews},
year = {2005},
volume = {29},
number = {4},
pages = {703--717},
month = sep
}
@article{Anonymous:4ctu7ybY,
title = {{Genomic Survey of Candidate Stress-Response Genes in the Estuarine Anemone}},
year = {2008},
pages = {1--22},
month = jun
}
@article{Tang:2004eq,
author = {Tang, H},
title = {{A Universal Evolutionary Index for Amino Acid Changes}},
journal = {Molecular Biology and Evolution},
year = {2004},
volume = {21},
number = {8},
pages = {1548--1556},
month = feb
}
@article{Garnett:1997uq,
author = {Garnett, G and Johnson, A},
title = {{Coining a new term in epidemiology: concurrency and HIV.}},
journal = {Aids},
year = {1997}
}
@article{Loire:2013if,
author = {Loire, Etienne and Chiari, Ylenia and Bernard, Aur{\'e}lien and Cahais, Vincent and Romiguier, Jonathan and Nabholz, Beno{\^\i}t and Louren{\c c}o, Joao Miguel and Galtier, Nicolas},
title = {{Population genomics of the endangered giant Galapagos tortoise}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {12},
pages = {R136}
}
@article{Mabry:2011hn,
author = {Mabry, Karen E and Streatfeild, Craig A and Keane, Brian and Solomon, Nancy G},
title = {{avpr1a length polymorphism is not associated with either social or genetic monogamy in free-living prairie voles}},
journal = {Animal Behaviour},
year = {2011},
volume = {81},
number = {1},
pages = {11--18},
month = jan
}
@article{Benedict:2010wd,
author = {Benedict, Lauryn and Benedict, L and Bowie, RCK and Bowie, Rauri C K and Fuchs, J and \textbf{MacManes}, Matthew},
title = {{When non-coding is non-neutral: the role of CHD1 gene polymorphism in sexing, in phylogenetics and as a correlate of fitness in birds}},
journal = {Ibis},
year = {2010}
}
@article{MacColl:2011ez,
author = {MacColl, andrew D C and MacColl, andrew D C},
title = {{The ecological causes of evolution.}},
journal = {Trends In Ecology {\&} Evolution},
year = {2011},
month = jul
}
@article{Ling:2010jy,
author = {Ling, Xin Z and Ling, Xin Z and Kong, Ming J and Kong, Ming J and Liu, Fang and Liu, Fang and Zhu, Bin H and Zhu, Bin H and Chen, Yi X and Chen, Yi X and Wang, Zhu Y and Wang, Zhu Y and Li, Juan L and Li, Juan L and Nelson, Karen E and Xia, Xian Y and Xia, Xian Y and Xiang, Charlie and Xiang, Charlie},
title = {{Molecular analysis of the diversity of vaginal microbiota associated with bacterial vaginosis}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {488}
}
@article{Kraaijeveld:2004dn,
author = {Kraaijeveld, K and Carew, P J and Billing, T and Adcock, Greg J and Mulder, Raoul A},
title = {{Extra-pair paternity does not result in differential sexual selection in the mutually ornamented black swan (Cygnus atratus)}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {6},
pages = {1625--1633},
month = apr
}
@article{Wallander:2001tt,
author = {Wallander, J and Blomqvist, D and Lifjeld, JT},
title = {{Genetic and social monogamy - Does it occur without mate guarding in the ringed plover?}},
journal = {Ethology},
year = {2001},
volume = {107},
number = {7},
pages = {561--572}
}
@article{Baruch:2008jc,
author = {Baruch, E and Weller, J I},
title = {{Estimation of the number of SNP genetic markers required for parentage verification}},
journal = {Animal Genetics},
year = {2008},
volume = {39},
number = {5},
pages = {474--479},
month = oct
}
@article{Hara:2012fu,
author = {Hara, Erina and Hara, Erina and Rivas, Miriam V and Rivas, Miriam V and Ward, James M and Ward, James M and Okanoya, Kazuo and Okanoya, Kazuo and Jarvis, Erich D},
title = {{Convergent Differential Regulation of Parvalbumin in the Brains of Vocal Learners}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e29457},
month = jan
}
@article{Huchard:2010ga,
author = {Huchard, Elise and Knapp, Leslie A and Wang, Jinliang and Raymond, Michel and Cowlishaw, Guy},
title = {{MHC, mate choice and heterozygote advantage in a wild social primate}},
journal = {Molecular Ecology},
pages = {no--no}
}
@article{sun:2000ut,
author = {sun8, penta},
title = {{Retrotransposons and Retroviruses: Analysis of the Envelope Gene}},
year = {2000},
pages = {1--10},
month = jan
}
@article{Hoekstra:2001vz,
author = {Hoekstra, HE and Moghadam, Hooman K and Hoekstra, JM and Harrison, Peter W and Berrigan, D and Zachar, Gergely and Sz{\'e}kely, Tam{\'a}s and Vignieri, SN and Mank, Judith E and Hoang, A and Hill, CE and Beerli, P and Kingsolver, JG},
title = {{Strength and tempo of directional selection in the wild}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2001},
volume = {98},
number = {16},
pages = {9157--9160}
}
@article{Berridge:2007ep,
author = {Berridge, Kent C and Berridge, Kent C},
title = {{The debate over dopamine's role in reward: the case for incentive salience.}},
journal = {Psychopharmacology},
year = {2007},
volume = {191},
number = {3},
pages = {391--431},
month = apr
}
@article{Anonymous:CNaI4_kX,
title = {{Fujita_UTexasArlington_application}}
}
@article{Glenn:2008jd,
author = {Glenn, Julie and Chen, Chin-Fu and Lewandowski, Adrienne and Cheng, Chun-Huai and Ramsdell, Clifton M and Bullard-Dillard, Rebecca and Chen, Jianguo and Dewey, Michael J and Glenn, Travis C},
title = {{Expressed sequence tags from \textit{Peromyscus} testis and placenta tissue: Analysis, annotation, and utility for mapping}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {300}
}
@article{Ezenwa:2010ch,
author = {Ezenwa, Vanessa O and Etienne, Rampal S and Luikart, Gordon and Beja-Pereira, Albano and Jolles, Anna E},
title = {{Hidden Consequences of Living in a Wormy World: Nematode-Induced Immune Suppression Facilitates Tuberculosis Invasion in African Buffalo}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {5},
pages = {613--624},
month = nov
}
@article{Kokko:2008cn,
author = {Kokko, Hanna and Jennions, Michael D},
title = {{Parental investment, sexual selection and sex ratios}},
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {21},
number = {4},
pages = {919--948}
}
@article{Hart:2013jr,
author = {Hart, Steven N and Therneau, Terry M and Zhang, Yuji and Poland, Gregory A and Kocher, Jean-Pierre},
title = {{Calculating Sample Size Estimates for RNA Sequencing Data}},
journal = {Journal of computational biology : a journal of computational molecular cell biology},
year = {2013},
pages = {130820165329004},
month = aug
}
@article{Abellla:2012wf,
author = {Abellla, Jerard Dave B and Abellla, Jerard Dave B},
title = {{Evolution of major histocompatibility complex class I and class II genes in the brown bear}},
year = {2012},
pages = {1--26},
month = oct
}
@article{Brady:2012bm,
author = {Brady, Steven P},
title = {{Road to evolution? Local adaptation to road adjacency in an amphibian (Ambystoma maculatum)}},
journal = {Scientific Reports},
year = {2012},
volume = {2},
month = jan
}
@article{Beyenbach:2003gu,
author = {Beyenbach, KW and Beyenbach, KW},
title = {{Transport mechanisms of diuresis in Malpighian tubules of insects}},
journal = {The Journal of experimental biology},
year = {2003},
volume = {206},
number = {21},
pages = {3845--3856}
}
@article{Watt:1977ty,
author = {Watt, W B and Watt, W B},
title = {{Adaptation at Specific Loci. 1. Natural Selection on Phosphoglucose Isomerase of Colias Butterflies: Biochemical and Population Aspects}},
journal = {Genetics},
year = {1977},
volume = {87},
pages = {177--194},
month = aug
}
@article{LeGault:2013gw,
author = {LeGault, L H and Dewey, C N},
title = {{Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs}},
journal = {Bioinformatics (Oxford, England)},
year = {2013}
}
@article{Bollen:2009ge,
author = {Bollen, Johan and van de Sompel, Herbert and Hagberg, Aric and Bettencourt, Luis and Chute, Ryan and Rodriguez, Marko A and Balakireva, Lyudmila},
title = {{Clickstream Data Yields High-Resolution Maps of Science}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {3},
pages = {e4803},
month = mar
}
@article{Roch:2010hz,
author = {Roch, S},
title = {{Toward Extracting All Phylogenetic Information from Matrices of Evolutionary Distances}},
journal = {Science (New York, NY)},
year = {2010},
volume = {327},
number = {5971},
pages = {1376--1379},
month = mar
}
@article{Hauser:2002gt,
author = {Hauser, L},
title = {{Loss of microsatellite diversity and low effective population size in an overexploited population of New Zealand snapper (Pagrus auratus)}},
journal = {Proceedings of the National Academy of Sciences},
year = {2002},
volume = {99},
number = {18},
pages = {11742--11747},
month = aug
}
@article{Ophir:2008dva,
author = {Ophir, Alexander G and Phelps, Steven M and Sorin, Anna Bess and Wolff, Jerry O},
title = {{Social but not genetic monogamy is associated with greater breeding success in prairie voles}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {3},
pages = {1143--1154},
month = mar
}
@article{Lebigre:2007kc,
author = {Lebigre, C and Alatalo, R V and Siitari, H and Parri, S},
title = {{Restrictive mating by females on black grouse leks}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {20},
pages = {4380--4389},
month = oct
}
@article{Lai:2009hp,
author = {Lai, Ping-Chang and Lai, Ping-Chang and Chen, Yao-Shen and Chen, Yao-Shen and Lee, Susan Shin-Jung and Lee, Susan Shin-Jung},
title = {{Infective endocarditis and osteomyelitis caused by Cellulomonas: a case report and review of the literature.}},
journal = {Diagnostic microbiology and infectious disease},
year = {2009},
volume = {65},
number = {2},
pages = {184--187},
month = oct
}
@article{Asaba:2014jr,
author = {Asaba, Akari and Okabe, Shota and Nagasawa, Miho and Kato, Masahiro and Koshida, Nobuyoshi and Osakada, Takuya and Mogi, Kazutaka and Kikusui, Takefumi},
title = {{Developmental Social Environment Imprints Female Preference for Male Song in Mice}},
journal = {PLOS ONE},
year = {2014},
volume = {9},
number = {2},
pages = {e87186},
month = feb
}
@article{Hudson:2008jq,
author = {Hudson, Matthew E},
title = {{Sequencing breakthroughs for genomic ecology and evolutionary biology}},
journal = {Molecular Ecology Resources},
year = {2008},
volume = {8},
number = {1},
pages = {3--17},
month = jan
}
@article{vonderHeyden:2008ht,
author = {von der Heyden, Sophie and Prochazka, Kim and Bowie, Rauri C K},
title = {{Significant population structure and asymmetric gene flow patterns amidst expanding populations of Clinus cottoides(Perciformes, Clinidae): application of molecular data to marine conservation planning in South Africa}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {22},
pages = {4812--4826},
month = nov
}
@article{SanchezHernandez:2009vp,
author = {Sanchez-Hernandez, Cornelio and Beatriz Gonzalez-Perez, Sara and Schnell, Gary D and de Lourdes Romero-Almara, Maria and Kennedy, Michael L and Best, Troy L},
title = {{MAMMALS FROM EJIDO RANCHITOS, COLIMA, MEXICO}},
journal = {Southwestern Naturalist},
year = {2009},
volume = {54},
number = {4},
pages = {409--420}
}
@article{Okello:2008fe,
author = {Okello, J B A and Wittemyer, G and Rasmussen, H B and Arctander, P and Nyakaana, S and Douglas-Hamilton, I and Siegismund, H R},
title = {{Effective population size dynamics reveal impacts of historic climatic events and recent anthropogenic pressure in African elephants}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {17},
pages = {3788--3799},
month = sep
}
@article{Dickinson:1996wd,
author = {Dickinson, JL and Leonard, ML},
title = {{Mate attendance and copulatory behaviour in western bluebirds: Evidence of mate guarding}},
journal = {Animal Behaviour},
year = {1996},
volume = {52},
pages = {981--992}
}
@article{Ehsani:2012fo,
author = {Ehsani, Alireza and Ehsani, Alireza and S{\o}rensen, Peter and S{\o}rensen, Peter and Pomp, Daniel and Allan, Mark and Allan, Mark and Janss, Luc and Janss, Luc},
title = {{Inferring genetic architecture of complex traits using Bayesian integrative analysis of genome and transcriptome data}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {456}
}
@article{Kidd:2007bb,
author = {Kidd, M and Nadler, B and Mane, S and Eick, G and Malfertheiner, M and Champaneria, M and Pfragner, R and Modlin, I},
title = {{GeneChip, geNorm, and gastrointestinal tumors: novel reference genes for real-time PCR}},
journal = {Physiological Genomics},
year = {2007},
volume = {30},
number = {3},
pages = {363--370},
month = may
}
@article{RIDLEY:1993vy,
author = {RIDLEY, M},
title = {{CLUTCH SIZE AND MATING FREQUENCY IN PARASITIC HYMENOPTERA}},
journal = {The American Naturalist},
year = {1993},
volume = {142},
number = {5},
pages = {893--910}
}
@article{Eldakar:2008ii,
author = {Eldakar, O T and Wilson, D S},
title = {{Selfishness as second-order altruism}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {19},
pages = {6982--6986},
month = may
}
@article{MunshiSouth:2007eh,
author = {Munshi-South, Jason},
title = {{Extra-pair paternity and the evolution of testis size in a behaviorally monogamous tropical mammal, the large treeshrew (Tupaia tana)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {2},
pages = {201--212},
month = jul
}
@article{Quan:2009hw,
author = {Quan, Y F and MAcManes, M D and Ebensperger, L A and Lacey, E A and Hayes, L D},
title = {{Isolation and characterization of polymorphic microsatellite loci from Octodon degus}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {3},
pages = {999--1001},
month = may
}
@article{Albrecht:2009cc,
author = {Albrecht, T and Vinkler, M and Schnitzer, J and Pol{\'a}kov{\'a}, R and Munclinger, P and Bryja, J},
title = {{Extra-pair fertilizations contribute to selection on secondary male ornamentation in a socially monogamous passerine}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {10},
pages = {2020--2030},
month = oct
}
@article{Anonymous:2013eg,
title = {{Mol Ecol 2013 Bashalkhanov}},
year = {2013},
pages = {1--37},
month = oct
}
@article{Hetem:2010bb,
author = {Hetem, Robyn Sheila and Hetem, Robyn Sheila and Strauss, Willem Maartin and Strauss, Willem Maartin and Fick, Linda Gayle and Fick, Linda Gayle and Maloney, Shane Kevin and Maloney, Shane Kevin and Meyer, Leith Carl Rodney and Meyer, Leith Carl Rodney and Shobrak, Mohammed and Shobrak, Mohammed and Fuller, andrea and Fuller, andrea and Mitchell, Duncan and Mitchell, Duncan},
title = {{Variation in the daily rhythm of body temperature of free-living Arabian oryx (Oryx leucoryx): does water limitation drive heterothermy?}},
journal = {Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology},
year = {2010},
volume = {180},
number = {7},
pages = {1111--1119},
month = oct
}
@article{Cockburn:2008gm,
author = {Cockburn, andrew and Double, Michael C},
title = {{Cooperatively breeding superb fairy-wrens show no facultative manipulation of offspring sex ratio despite plausible benefits}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {5},
pages = {681--688},
month = sep
}
@article{Anonymous:R8m214Aa,
title = {{1307.7933-2}},
year = {2013},
pages = {1--15},
month = nov
}
@article{Anonymous:VWSBEbjc,
title = {{Diversity of the Human Intestinal Microbial Flora}},
year = {2007},
pages = {1--8},
month = jul
}
@article{Widemo:1999ub,
author = {Widemo, F and S{\ae}ther, SA},
title = {{Beauty is in the eye of the beholder: causes and consequences of variation in mating preferences.}},
journal = {Trends In Ecology {\&} Evolution},
year = {1999},
volume = {14},
number = {1},
pages = {26--31},
month = jan
}
@article{Bloom:2010tb,
author = {Bloom, Paul},
title = {{How do morals change?}},
journal = {Nature},
year = {2010},
volume = {464},
number = {7288},
pages = {490--490}
}
@article{Swanson:2013ed,
author = {Swanson, Lucas and Swanson, Lucas and Robertson, Gordon and Robertson, Gordon and Mungall, Karen L and Mungall, Karen L and Butterfield, Yaron S and Butterfield, Yaron S and Chiu, Readman and Chiu, Readman and Corbett, Richard D and Corbett, Richard D and Docking, T and Docking, T and Hogge, Donna and Hogge, Donna and Jackman, Shaun D and Moore, Richard A and Moore, Richard A and Mungall, andrew J and Mungall, andrew J and Nip, Ka and Nip, Ka and Parker, Jeremy DK and Parker, Jeremy DK and Qian, Jenny and Qian, Jenny and Raymond, Anthony and Raymond, Anthony and Sung, Sandy and Sung, Sandy and Tam, Angela and Tam, Angela and Thiessen, Nina and Thiessen, Nina and Varhol, Richard and Varhol, Richard and Wang, Sherry and Wang, Sherry and Yorukoglu, Deniz and Yorukoglu, Deniz and Zhao, Yongjun and Zhao, Yongjun and Hoodless, Pamela A and Hoodless, Pamela A and Sahinalp, S and Sahinalp, S and Karsan, Aly and Karsan, Aly and Birol, Inan{\c c}},
title = {{Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {550}
}
@article{Fournier:2004ik,
author = {Fournier, D and Aron, S and Keller, L},
title = {{Significant reproductive skew in the facultatively polygynous ant Pheidole pallidula}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {1},
pages = {203--210},
month = jan
}
@article{Taylor:2013jv,
author = {Taylor, R C and Ryan, M J},
title = {{Interactions of Multisensory Components Perceptually Rescue Tungara Frog Mating Signals}},
journal = {Science (New York, NY)},
year = {2013},
month = jun
}
@article{Fricke:2009ei,
author = {Fricke, C and Wigby, S and Hobbs, R and Chapman, T},
title = {{The benefits of male ejaculate sex peptide transfer in \textit{Drosophila} \textit{melanogaster}}},
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {22},
number = {2},
pages = {275--286},
month = nov
}
@article{Shoemaker:2010jz,
author = {Shoemaker, R and Deng, J and Wang, W and Zhang, K},
title = {{Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {7},
pages = {883--889},
month = jul
}
@article{Richman:2003ik,
author = {Richman, AD and Herrera, LG and Nash, D and Schierup, MH and Schierup, MH},
title = {{Relative roles of mutation and recombination in generating allelic polymorphism at an MHC class II locus in \emph{\textit{Peromyscus} \textit{maniculatus}}}},
journal = {Genetical Research},
year = {2003},
volume = {82},
number = {2},
pages = {89--99}
}
@article{Chandler:2008ev,
author = {Chandler, C H and Zamudio, K R},
title = {{Reproductive success by large, closely related males facilitated by sperm storage in an aggregate breeding amphibian}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {6},
pages = {1564--1576},
month = mar
}
@article{AlvarezBusto:2007cs,
author = {Alvarez-Busto, J and Garcia-Etxebarria, K and Herrero, J and Garin, I and Jugo, B M},
title = {{Diversity and evolution of the Mhc-DRB1 gene in the two endemic Iberian subspecies of Pyrenean chamois, Rupicapra pyrenaica}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {4},
pages = {406--413},
month = jun
}
@article{Guo:2003tn,
author = {Guo, D and Milewicz, DM},
title = {{Methodology for using a universal primer to label amplified DNA segments for molecular analysis}},
journal = {Biotechnology letters},
year = {2003},
volume = {25},
number = {24},
pages = {2079--2083}
}
@article{Chan:2005gj,
author = {Chan, Y L and Lacey, E A and Pearson, O P and Hadly, E A},
title = {{Ancient DNA reveals Holocene loss of genetic diversity in a South American rodent}},
journal = {Biology Letters},
year = {2005},
volume = {1},
number = {4},
pages = {423--426},
month = dec
}
@article{deJong:2012hb,
author = {de Jong, M A and de Jong, M A and Collins, S and Collins, S and Beldade, P and Beldade, P and Brakefield, P M and Brakefield, P M and Zwaan, B J and Zwaan, B J},
title = {{Footprints of selection in wild populations of Bicyclus anynanaalong a latitudinal cline}},
journal = {Molecular Ecology},
year = {2012},
volume = {22},
number = {2},
pages = {341--353},
month = nov
}
@article{Hare:2008ka,
author = {Hare, Emily E and Peterson, Brant K and Eisen, Michael B},
title = {{A Careful Look at Binding Site Reorganization in the even-skipped Enhancers of \textit{Drosophila} and Sepsids}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {11},
pages = {e1000268},
month = nov
}
@article{Kahn:1999vb,
author = {Kahn, NW and Quinn, TW},
title = {{Male-driven evolution among eoaves? A test of the replicative division hypothesis in a heterogametic female (ZW) system}},
journal = {Journal of Molecular Evolution},
year = {1999},
volume = {49},
number = {6},
pages = {750--759}
}
@article{GallardoRomero:2012be,
author = {Gallardo-Romero, Nadia F and Gallardo-Romero, Nadia F and Drew, Clifton P and Drew, Clifton P and Weiss, Sonja L and Weiss, Sonja L and Metcalfe, Maureen G and Metcalfe, Maureen G and Nakazawa, Yoshinori J and Nakazawa, Yoshinori J and Smith, Scott K and Smith, Scott K and Emerson, Ginny L and Emerson, Ginny L and Hutson, Christina L and Hutson, Christina L and Salzer, Johanna S and Salzer, Johanna S and Bartlett, Jeanine H and Bartlett, Jeanine H and Olson, Victoria A and Olson, Victoria A and Clemmons, Cody J and Clemmons, Cody J and Davidson, Whitni B and Davidson, Whitni B and Zaki, Sherif R and Zaki, Sherif R and Karem, Kevin L and Karem, Kevin L and Damon, Inger K and Damon, Inger K and Carroll, Darin S and Carroll, Darin S},
title = {{The Pox in the North American Backyard: Volepox Virus Pathogenesis in California Mice (\textit{Peromyscus} \textit{californicus})}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e43881},
month = aug
}
@article{Khila:2012ja,
author = {Khila, Abderrahman and Abouheif, Ehab and Rowe, Locke},
title = {{Function, developmental genetics, and fitness consequences of a sexually antagonistic trait.}},
journal = {Science (New York, NY)},
year = {2012},
volume = {336},
number = {6081},
pages = {585--589},
month = may
}
@article{Malisa:2011wo,
author = {Malisa, Allen and Gwakisa, Paul and Balthazary, Sakurani and Balthazary, Sakurani and Wasser, Sam and Wasser, Sam and Mutayoba, Benezeth and Mutayoba, Benezeth},
title = {{Species and gender differentiation between and among domestic and wild animals using mitochondrial and sex-linked DNA markers}},
journal = {African Journal of Biotechnology},
year = {2011},
volume = {4},
number = {11}
}
@article{Moller:1986uj,
author = {Moller, AP},
title = {{MATING SYSTEMS AMONG EUROPEAN PASSERINES - A REVIEW}},
journal = {Ibis},
year = {1986},
volume = {128},
number = {2},
pages = {234--250}
}
@article{Clay:2009cx,
author = {Clay, C A and Lehmer, E M and Previtali, A and St Jeor, S and Dearing, M D},
title = {{Contact heterogeneity in deer mice: implications for Sin Nombre virus transmission}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1660},
pages = {1305--1312},
month = feb
}
@article{Baudinette:2009df,
author = {Baudinette, R V and Baudinette, R V},
title = {{The physiology of chronic water deprivation in the California ground squirrel (Spermophilus beecheyi): relevance to natural populations}},
journal = {Journal of Zoology},
year = {2009},
volume = {173},
number = {2},
pages = {159--171},
month = aug
}
@article{Hodgson:2006ka,
author = {Hodgson, D J and Hosken, D J},
title = {{Sperm competition promotes the exploitation of rival ejaculates}},
journal = {Journal of Theoretical Biology},
year = {2006},
volume = {243},
number = {2},
pages = {230--234},
month = nov
}
@article{Taylor:2010hx,
author = {Taylor, Sabrina S and Sardell, Rebecca J and Reid, Jane M and Bucher, Thomas and Taylor, Nathan G and Arcese, Peter and Keller, Lukas F},
title = {{Inbreeding coefficient and heterozygosity-fitness correlations in unhatched and hatched song sparrow nestmates}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {20},
pages = {4454--4461},
month = sep
}
@article{Zhang:2000ku,
author = {Zhang, Zheng and Schwartz, Scott and Wagner, Lukas and Miller, Webb},
title = {{A Greedy Algorithm for Aligning DNA Sequences}},
journal = {Journal of Computational Biology},
year = {2000},
volume = {7},
number = {1-2},
pages = {203--214},
month = feb
}
@article{Antunes:1998wy,
author = {Antunes, SG and de Groot, NG and Brok, H and Doxiadis, G and Menezes, AAL and Otting, N and Bontrop, RE},
title = {{The common marmoset: A new world primate species with limited Mhc class II variability}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1998},
volume = {95},
number = {20},
pages = {11745--11750}
}
@article{Park:2012hz,
author = {Park, E and Williams, B and Wold, B J and Mortazavi, A},
title = {{RNA editing in the human ENCODE RNA-seq data}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {9},
pages = {1626--1633},
month = sep
}
@article{anderson:2006kp,
author = {anderson, M J and Dixson, A S and Dixson, A F},
title = {{Mammalian sperm and oviducts are sexually selected: evidence for co-evolution}},
journal = {Journal of Zoology},
year = {2006},
volume = {270},
number = {4},
pages = {682--686},
month = dec
}
@article{Ford:2002wv,
author = {Ford, K and Sohn, W and Sohn, W and Lepkowski, J and Lepkowski, J},
title = {{American adolescents: Sexual mixing patterns, bridge partners, and concurrency}},
journal = {Sexually Transmitted Diseases},
year = {2002},
volume = {29},
number = {1},
pages = {13--19}
}
@article{Chapman:2008dm,
author = {Chapman, M A and Leebens-Mack, J H and Burke, J M},
title = {{Positive Selection and Expression Divergence Following Gene Duplication in the Sunflower CYCLOIDEA Gene Family}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {7},
pages = {1260--1273},
month = apr
}
@article{Lake:2009fo,
author = {Lake, James A},
title = {{Evidence for an early prokaryotic endosymbiosis}},
journal = {Nature},
year = {2009},
volume = {460},
number = {7258},
pages = {967--971},
month = aug
}
@article{Brommer:2010cf,
author = {Brommer, Jon E and Alho, Jussi S and Biard, Clotilde and Chapman, Joanne R and Charmantier, Anne and Dreiss, Amelie and Hartley, Ian R and Hjernquist, M{\aa}rten B and Kempenaers, Bart and Komdeur, Jan and Laaksonen, Toni and Lehtonen, Paula K and Lubjuhn, Thomas and Patrick, Samantha C and Rosivall, Bal{\'a}zs and Tinbergen, Joost M and van der Velde, Marco and van Oers, Kees and Wilk, Tomasz and Winkel, Wolfgang},
title = {{Passerine Extrapair Mating Dynamics: A Bayesian Modeling Approach Comparing Four Species}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {2},
pages = {178--187},
month = aug
}
@article{Bhatt:2009gc,
author = {Bhatt, Samir and Katzourakis, Aris and Pybus, Oliver G},
title = {{Detecting natural selection in RNA virus populations using sequence summary statistics}},
journal = {Infection, Genetics and Evolution},
year = {2010},
volume = {10},
number = {3},
pages = {421--430},
month = apr
}
@article{Brinkerhoff:2010dh,
author = {Brinkerhoff, R Jory and Brinkerhoff, R Jory and Kabeya, Hidenori and Kabeya, Hidenori and Inoue, Kai and Inoue, Kai and Bai, Ying and Bai, Ying and Maruyama, Soichi and Maruyama, Soichi},
title = {{Detection of multiple Bartonella species in digestive and reproductive tissues of fleas collected from sympatric mammals.}},
journal = {The ISME Journal},
year = {2010},
volume = {4},
number = {7},
pages = {955--958},
month = jul
}
@article{Tuttle:2004tc,
author = {Tuttle, EM and Tuttle, EM and Pruett-Jones, S and Pruett-Jones, S},
title = {{Estimates of extreme sperm production: morphological and experimental evidence from reproductively promiscuous fairy-wrens (Malurus)}},
journal = {Animal Behaviour},
year = {2004},
volume = {68},
pages = {541--550}
}
@article{Cooper:1993tw,
author = {Cooper, PD},
title = {{ScienceDirect.com - Journal of Arid Environments - Field metabolic rate and cost of activity in two tenebrionid beetles from the Mojave Desert of North America}},
journal = {Journal of Arid Environments},
year = {1993}
}
@article{Cipollini:2004ua,
author = {Cipollini, D},
title = {{Stretching the limits of plasticity: Can a plant defend against both competitors and herbivores?}},
journal = {Ecology},
year = {2004},
volume = {85},
number = {1},
pages = {28--37}
}
@article{Barrientos:2013bl,
author = {Barrientos, Rafael and Kvist, Laura and Barbosa, andr{\'e}s and Valera, Francisco and Khoury, Fares and Varela, Sara and Moreno, Eulalia},
title = {{Refugia, colonization and diversification of an arid-adapted bird: coincident patterns between genetic data and ecological niche modelling}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = nov
}
@article{Miranda:2013cq,
author = {Miranda, Ana Catarina and Miranda, Ana Catarina and Schielzeth, Holger and Sonntag, Tanja and Sonntag, Tanja and Partecke, Jesko and Partecke, Jesko},
title = {{Urbanization and its effects on personality traits: a result of microevolution or phenotypic plasticity?}},
journal = {Global Change Biology},
year = {2013},
volume = {19},
number = {9},
pages = {2634--2644},
month = jun
}
@article{Ansell:2013ec,
author = {Ansell, Brendan R E and Schnyder, Manuela and Deplazes, Peter and Korhonen, Pasi K and Young, Neil D and Hall, Ross S and Mangiola, Stefano and Boag, Peter R and Hofmann, andreas and Sternberg, Paul W and Jex, Aaron R and Gasser, Robin B},
title = {{Insights into the immuno-molecular biology of \textit{Angiostrongylus vasorum} through transcriptomics-Prospects for new interventions.}},
journal = {Biotechnology Advances},
year = {2013},
volume = {31},
number = {8},
pages = {1486--1500},
month = dec
}
@article{Uawithya:2008fi,
author = {Uawithya, P and Pisitkun, T and Ruttenberg, B E and Knepper, M A},
title = {{Transcriptional profiling of native inner medullary collecting duct cells from rat kidney}},
journal = {Physiological Genomics},
year = {2007},
volume = {32},
number = {2},
pages = {229--253},
month = oct
}
@book{Anonymous:2006ta,
publisher = {Elsevier},
year = {2006}
}
@article{Tao:2012gh,
author = {Tao, Xiang and Gu, Ying-Hong and Gu, Ying-Hong and Wang, Hai-Yan and Wang, Hai-Yan and Zheng, Wen and Zheng, Wen and Li, Xiao and Li, Xiao and Zhao, Chuan-Wu and Zhao, Chuan-Wu and Zhang, Yi-Zheng and Zhang, Yi-Zheng},
title = {{Digital Gene Expression Analysis Based on Integrated De Novo Transcriptome Assembly of Sweet Potato [Ipomoea batatas (L.) Lam.]}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e36234},
month = apr
}
@article{Wagner:1992wv,
author = {Wagner, RH},
title = {{EXTRA-PAIR COPULATIONS IN A LEK - THE SECONDARY MATING SYSTEM OF MONOGAMOUS RAZORBILLS}},
journal = {Behavioral Ecology and Sociobiology},
year = {1992},
volume = {31},
number = {1},
pages = {63--71}
}
@article{Bollen:2009dw,
author = {Bollen, Johan and van de Sompel, Herbert and Hagberg, Aric and Chute, Ryan and Mailund, Thomas},
title = {{A Principal Component Analysis of 39 Scientific Impact Measures}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {6},
pages = {e6022},
month = jun
}
@article{Li:2009kb,
author = {Li, J B and Levanon, E Y and Yoon, J-K and Aach, J and Xie, B and Leproust, E and Zhang, K and Gao, Y and Church, G M},
title = {{Genome-Wide Identification of Human RNA Editing Sites by Parallel DNA Capturing and Sequencing}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5931},
pages = {1210--1213},
month = may
}
@article{Amos:2009dg,
author = {Amos, William and Acevedo-Whitehouse, Karina},
title = {{A new test for genotype-fitness associations reveals a single microsatellite allele that strongly predicts the nature of tuberculosis infections in wild boar}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {4},
pages = {1102--1111},
month = jul
}
@article{Koffi:2009ey,
author = {Koffi, M and De Meeus, T and Bucheton, B and Solano, P and Camara, M and Kaba, D and Cuny, G and Ayala, F J and Jamonneau, V},
title = {{Population genetics of Trypanosoma brucei gambiense, the agent of sleeping sickness in Western Africa}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {1},
pages = {209--214},
month = jan
}
@article{Michalczyk:2011kk,
author = {Michalczyk, L and Michalczyk, L and Millard, A L and Millard, A L and Martin, O Y and Martin, O Y and Lumley, A J and Lumley, A J and Emerson, B C and Emerson, B C and Chapman, T and Gage, M J G and Gage, M J G},
title = {{Inbreeding Promotes Female Promiscuity}},
journal = {Science (New York, NY)},
year = {2011},
volume = {333},
number = {6050},
pages = {1739--1742},
month = sep
}
@article{Brylawski:2004gp,
author = {Brylawski, Alice M Z and Whittingham, Linda A},
title = {{An experimental study of mate guarding and paternity in house wrens}},
journal = {Animal Behaviour},
year = {2004},
volume = {68},
number = {6},
pages = {1417--1424},
month = dec
}
@article{Nishitania:2005bc,
author = {Nishitania, C and Nishitania, C and Mitsuzawa, H and Mitsuzawa, H and Hyakushima, N and Hyakushima, N and Sano, H and Sano, H and Matsushima, N and Matsushima, N and Kuroki, Y and Kuroki, Y},
title = {{The Toll-like receptor 4 region Glu(24)-Pro(34) is critical for interaction with MD-2}},
journal = {Biochemical and biophysical research communications},
year = {2005},
volume = {328},
number = {2},
pages = {586--590}
}
@article{Mamelak:2009ji,
author = {Mamelak, Mortimer},
title = {{Narcolepsy and depression and the neurobiology of gammahydroxybutyrate}},
journal = {Progress in Neurobiology},
year = {2009},
volume = {89},
number = {2},
pages = {193--219},
month = oct
}
@article{Baker:2006ju,
author = {Baker, C S and Vant, M D and Dalebout, M L and Lento, G M and O{\textquoteright}Brien, S J and Yuhki, N},
title = {{Diversity and duplication of DQB and DRB-like genes of the MHC in baleen whales (suborder: Mysticeti)}},
journal = {Immunogenetics},
year = {2006},
volume = {58},
number = {4},
pages = {283--296},
month = mar
}
@article{Faircloth:2012ck,
author = {Faircloth, B C and Faircloth, B C and McCormack, J E and McCormack, J E and Crawford, N G and Crawford, N G and Harvey, M G and Harvey, M G and Brumfield, R T and Brumfield, R T and Glenn, T C},
title = {{Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales}},
journal = {Systematic Biology},
year = {2012},
volume = {61},
number = {5},
pages = {717--726},
month = aug
}
@article{Shaw:2008jv,
author = {Shaw, J C and Korzan, W J and Carpenter, R E and Kuris, A M and Lafferty, K D and Summers, C H and {\O}verli, {\O}},
title = {{Parasite manipulation of brain monoamines in California killifish (Fundulus parvipinnis) by the trematode Euhaplorchis californiensis}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1659},
pages = {1137--1146},
month = mar
}
@article{Gaur:1996ws,
author = {Gaur, LK and Nepom, GT},
title = {{Ancestral major histocompatibility complex DRB genes beget conserved patterns of localized polymorphisms}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1996},
volume = {93},
number = {11},
pages = {5380--5383}
}
@article{HalaschekWiener:2009gz,
author = {Halaschek-Wiener, Julius and Amirabbasi-Beik, Mahsa and Monfared, Nasim and Pieczyk, Markus and Sailer, Christian and Kollar, Anita and Thomas, Ruth and Agalaridis, Georgios and Yamada, So and Oliveira, Lisa and Collins, Jennifer A and Meneilly, Graydon and Marra, Marco A and Madden, Kenneth M and Le, Nhu D and Connors, Joseph M and Brooks-Wilson, Angela R},
title = {{Genetic Variation in Healthy Oldest-Old}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6641},
month = aug
}
@article{Hoekstra:2006df,
author = {Hoekstra, H E},
title = {{Genetics, development and evolution of adaptive pigmentation in vertebrates.}},
journal = {Heredity},
year = {2006},
volume = {97},
number = {3},
pages = {222--234},
month = sep
}
@article{Morris:1995ui,
author = {Morris, Martina and Kretzschmar, Mirjam and Kretzschmar, Mirjam},
title = {{Concurrent partnerships and transmission dynamics in networks}},
journal = {Social Networks},
year = {1995},
volume = {17},
number = {3-4},
pages = {299--318}
}
@article{Pafilis:2009kc,
author = {Pafilis, Panayiotis and Foufopoulos, Johannes and Poulakakis, Nikos and Lymberakis, Petros and Valakos, Efstratios D},
title = {{TAIL SHEDDING IN ISLAND LIZARDS [LACERTIDAE, REPTILIA]: DECLINE OF ANTIPREDATOR DEFENSES IN RELAXED PREDATION ENVIRONMENTS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {5},
pages = {1262--1278},
month = may
}
@article{Bao:2009hg,
author = {Bao, Siqin and Tang, Fuchou and Li, Xihe and Hayashi, Katsuhiko and Gillich, Astrid and Lao, Kaiqin and Surani, M Azim},
title = {{Epigenetic reversion of post-implantation epiblast to pluripotent embryonic stem cells}},
journal = {Nature},
year = {2009},
volume = {461},
number = {7268},
pages = {1292--1295},
month = oct
}
@article{Reynolds:1996wb,
author = {Reynolds, J and Reynolds, J},
title = {{Animal breeding systems}},
journal = {Trends In Ecology {\&} Evolution},
year = {1996}
}
@article{Barrero:2011ha,
author = {Barrero, Roberto A and Barrero, Roberto A and Chapman, Brett and Chapman, Brett and Yang, Yanfang and Yang, Yanfang and Moolhuijzen, Paula and Moolhuijzen, Paula and Keeble-Gagnere, Gabriel and Keeble-Gagnere, Gabriel and Zhang, Nan and Zhang, Nan and Tang, Qi and Tang, Qi and Bellgard, Matthew I and Bellgard, Matthew I and Qiu, Deyou and Qiu, Deyou},
title = {{\textit{De novo} assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {600}
}
@article{Ramm:2009dg,
author = {Ramm, S A and Stockley, P},
title = {{Adaptive plasticity of mammalian sperm production in response to social experience}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1657},
pages = {745--751},
month = feb
}
@article{Fouet:2012eo,
author = {Fouet, Caroline and Fouet, Caroline and Gray, Emilie and Gray, Emilie and Besansky, Nora J and Besansky, Nora J and Costantini, Carlo and Costantini, Carlo},
title = {{Adaptation to Aridity in the Malaria Mosquito Anopheles gambiae: Chromosomal Inversion Polymorphism and Body Size Influence Resistance to Desiccation}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e34841},
month = apr
}
@article{Beery:2008do,
author = {Beery, Annaliese K and Lacey, Eileen A and Francis, Darlene D},
title = {{Oxytocin and vasopressin receptor distributions in a solitary and a social species of tuco-tuco (\textit{Ctenomys} haigi and\textit{Ctenomys} \textit{sociabilis})}},
journal = {The Journal of Comparative Neurology},
year = {2008},
volume = {507},
number = {6},
pages = {1847--1859}
}
@article{Fishman:2004dy,
author = {Fishman, M},
title = {{Indiscriminate polyandry and male parental effort}},
journal = {Bulletin of Mathematical Biology},
year = {2004},
volume = {66},
number = {1},
pages = {47--63},
month = jan
}
@article{Singh:2011cu,
author = {Singh, Darshan and Singh, Darshan and Orellana, Christian F. and Orellana, Christian F. and Hu, Yin and Hu, Yin and Jones, Corbin D and Liu, Yufeng and Liu, Yufeng and Chiang, Derek Y. and Chiang, Derek Y. and Liu, Jinze and Liu, Jinze and Prins, Jan F. and Prins, Jan F.},
title = {{FDM: a graph-based statistical method to detect differential transcription using RNA-seq data}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {19},
pages = {2633--2640}
}
@article{Anonymous:2007vn,
title = {{Introduction+to+the+Responsible+Conduct+of+Research}},
year = {2007},
pages = {1--184},
month = aug
}
@article{Rodrigue:2010by,
author = {Rodrigue, Nicolas and Rodrigue, Nicolas and Philippe, Herv{\'e} and Lartillot, Nicolas and Lartillot, Nicolas},
title = {{Mutation-selection models of coding sequence evolution with site-heterogeneous amino acid fitness profiles.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {10},
pages = {4629--4634},
month = mar
}
@article{Labaj:2011co,
author = {Labaj, P P and Labaj, P P and Leparc, G G and Leparc, G G and Linggi, B E and Linggi, B E and Markillie, L M and Markillie, L M and Wiley, H S and Wiley, H S and Kreil, D P and Kreil, D P},
title = {{Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {13},
pages = {i383--i391},
month = jun
}
@article{Waser:2006iy,
author = {Waser, Peter M and Waser, Peter M and Busch, Joseph D and Busch, Joseph D and Mccormick, Cory R and Mccormick, Cory R and Dewoody, J andrew and Dewoody, J andrew},
title = {{Parentage analysis detects cryptic precapture dispersal in a philopatric rodent.}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {7},
pages = {1929--1937},
month = jun
}
@article{Rani:2009gh,
author = {Rani, Asha and Sharma, Anil and Rajagopal, Raman and Adak, Tridibesh and Bhatnagar, Raj K},
title = {{Bacterial diversity analysis of larvae and adult midgut micro-flora using culture-dependent and culture-independent methods in lab-reared and field-collected Anopheles stephensi-an Asian malarial vector}},
journal = {BMC Microbiology},
year = {2009},
volume = {9},
number = {1},
pages = {96}
}
@article{CluttonBrock:2006cq,
author = {Clutton-Brock, T H and Hodge, S J and Spong, G and Russell, A F and Jordan, N R and Bennett, N C and Sharpe, L L and Manser, M B},
title = {{Intrasexual competition and sexual selection in cooperative mammals}},
journal = {Nature},
year = {2006},
volume = {444},
number = {7122},
pages = {1065--1068},
month = dec
}
@article{Hansen:2002vn,
author = {Hansen, Michael M and Hansen, Michael M and Ruzzante, Daniel E and Ruzzante, Daniel E and Nielsen, Einar E and Nielsen, Einar E and Bekkevold, Dorte and Bekkevold, Dorte and Mensberg, Karen-Lise D and Mensberg, Karen-Lise D},
title = {{Long-term effective population sizes, temporal stability of genetic composition and potential for local adaptation in anadromous brown trout (\emph{Salmo trutta}) populations.}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {12},
pages = {2523--2535},
month = dec
}
@article{Jaffe:2012ft,
author = {Jaff{\'e}, Rodolfo and Garcia-Gonzalez, Francisco and den Boer, Susanne P A and Simmons, Leigh W and Baer, Boris},
title = {{PATTERNS OF PATERNITY SKEW AMONG POLYANDROUS SOCIAL INSECTS: WHAT CAN THEY TELL US ABOUT THE POTENTIAL FOR SEXUAL SELECTION?}},
journal = {Evolution},
year = {2012},
volume = {66},
number = {12},
pages = {3778--3788},
month = jul
}
@article{Barry:2010gy,
author = {Barry, Katherine L and Kokko, Hanna},
title = {{Male mate choice: why sequential choice can make its evolution difficult}},
journal = {Animal Behaviour},
year = {2010},
volume = {80},
number = {1},
pages = {163--169},
month = jul
}
@article{Geraldes:2010dj,
author = {Geraldes, Armando and Kane, Nolan C},
title = {{Pushing north one bottleneck at a time: site frequency spectra tell the history of Sitka spruce}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {18},
pages = {3837--3839},
month = sep
}
@article{Abouheif:2002uq,
author = {Abouheif, E and Abouheif, E and Wray, GA and Wray, GA},
title = {{Evolution of the gene network underlying wing polyphenism in ants}},
journal = {Science (New York, NY)},
year = {2002},
volume = {297},
number = {5579},
pages = {249--252}
}
@article{Bernhard:2000wr,
author = {Bernhard, A E and Field, K G},
title = {{Identification of nonpoint sources of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes}},
journal = {Applied and Environmental Microbiology},
year = {2000},
volume = {66},
number = {4},
pages = {1587--1594},
month = apr
}
@article{Kloch:2010en,
author = {Kloch, Agnieszka and Kloch, Agnieszka and Babik, Wieslaw and Babik, Wieslaw and Bajer, Anna and Bajer, Anna and Sinski, Edward and Sinski, Edward and Radwan, Jacek and Radwan, Jacek},
title = {{Effects of an MHC-DRB genotype and allele number on the load of gut parasites in the bank vole Myodes glareolus}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
pages = {255--265},
month = mar
}
@article{Gerson:2011hz,
author = {Gerson, A R and Guglielmo, C G},
title = {{House sparrows (Passer domesticus) increase protein catabolism in response to water restriction}},
journal = {AJP: Regulatory, Integrative and Comparative Physiology},
year = {2011},
volume = {300},
number = {4},
pages = {R925--R930},
month = apr
}
@article{Bannantine:1999ts,
author = {Bannantine, JP and Bannantine, JP and Rockey, DD and Rockey, DD},
title = {{Use of a primate model system to identify Chlamydia trachomatis protein antigens recognized uniquely in the context of infection}},
journal = {Microbiology-Uk},
year = {1999},
volume = {145},
pages = {2077--2085}
}
@article{Hoffmann:2009dl,
author = {Hoffmann, Steve and Otto, Christian and Kurtz, Stefan and Sharma, Cynthia M and Khaitovich, Philipp and Vogel, J{\"o}rg and Stadler, Peter F and Hackerm{\"u}ller, J{\"o}rg},
title = {{Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {9},
pages = {e1000502},
month = sep
}
@article{Korall:2004id,
author = {Korall, Petra and Kenrick, Paul},
title = {{The phylogenetic history of Selaginellaceae based on DNA sequences from the plastid and nucleus: extreme substitution rates and rate heterogeneity}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2004},
volume = {31},
number = {3},
pages = {852--864},
month = jun
}
@article{Xu:2008fs,
author = {Xu, Q and Cheng, C H C and Hu, P and Ye, H and Chen, Z and Cao, L and Chen, L and Shen, Y and Chen, L},
title = {{Adaptive Evolution of Hepcidin Genes in Antarctic Notothenioid Fishes}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {6},
pages = {1099--1112},
month = jan
}
@article{Swartz:2010kt,
author = {Swartz, Maryke J and Jenkins, Stephen H and Dochtermann, Ned A},
title = {{Coexisting desert rodents differ in selection of microhabitats for cache placement and pilferage}},
journal = {Journal of Mammalogy},
year = {2010},
volume = {91},
number = {5},
pages = {1261--1268},
month = oct
}
@article{Smith:2011gi,
author = {Smith, Steve and de Bellocq, Joelle Go{\"u}y and Suchentrunk, Franz and Schaschl, Helmut},
title = {{Evolutionary genetics of MHC class II beta genes in the brown hare, Lepus europaeus.}},
journal = {Immunogenetics},
year = {2011},
volume = {63},
number = {11},
pages = {743--751},
month = nov
}
@article{Emlen:1977tm,
author = {Emlen, ST and Oring, LW},
title = {{Ecology, Sexual Selection, and Evolution of Mating Systems}},
journal = {Science (New York, NY)},
year = {1977},
volume = {197},
number = {4300},
pages = {215--223}
}
@article{Caldwell:2008br,
author = {Caldwell, Heather K and Lee, Heon-Jin and Macbeth, Abbe H and Young, III, W Scott},
title = {{Vasopressin: Behavioral roles of an {\textquotedblleft}original{\textquotedblright} neuropeptide}},
journal = {Progress in Neurobiology},
year = {2008},
volume = {84},
number = {1},
pages = {1--24},
month = jan
}
@article{Foote:2010wx,
author = {Foote, A and Morin, P and Durban, J},
title = {{Positive selection on the killer whale mitogenome}},
journal = {Biology {\ldots}},
year = {2010}
}
@article{Cui:2010hg,
author = {Cui, Peng and Lin, Qiang and Ding, Feng and Xin, Chengqi and Gong, Wei and Zhang, Lingfang and Geng, Jianing and Zhang, Bing and Yu, Xiaomin and Yang, Jin and Hu, Songnian and Yu, Jun},
title = {{A comparison between ribo-minus RNA-sequencing and polyA-selected RNA-sequencing}},
journal = {Genomics},
year = {2010},
volume = {96},
number = {5},
pages = {259--265},
month = nov
}
@article{Ostfeld:2009vl,
author = {Ostfeld, R S},
title = {{Climate change and the distribution and intensity of infectious diseases}},
journal = {Ecology},
year = {2009},
volume = {90},
number = {4},
pages = {903--905}
}
@article{Balenger:2009iy,
author = {Balenger, Susan L and Johnson, L Scott and Masters, Brian S},
title = {{Sexual selection in a socially monogamous bird: male color predicts paternity success in the mountain bluebird, Sialia currucoides}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {63},
number = {3},
pages = {403--411},
month = oct
}
@article{Double:1997tz,
author = {Double, MC and Dawson, D and Burke, T and Cockburn, A},
title = {{Finding the fathers in the least faithful bird: A microsatellite-based genotyping system for the superb fairy-wren Malurus cyaneus}},
journal = {Molecular Ecology},
year = {1997},
volume = {6},
number = {7},
pages = {691--693}
}
@article{Burnham:1979uv,
author = {Burnham, KP and Overton, WS and Overton, WS},
title = {{Robust Estimation of Population-Size When Capture Probabilities Vary Among Animals}},
journal = {Ecology},
year = {1979},
volume = {60},
number = {5},
pages = {927--936}
}
@article{Vitti:2013ki,
author = {Vitti, J J and Grossman, S R and Sabeti, P C},
title = {{Detecting Natural Selection in Genomic Data}},
journal = {Annual Review of Genetics},
year = {2013}
}
@article{Carter:1995tp,
author = {Carter, CS and DeVries, AC and GETZ, LL},
title = {{PHYSIOLOGICAL SUBSTRATES OF MAMMALIAN MONOGAMY - THE PRAIRIE VOLE MODEL}},
journal = {Neuroscience and Biobehavioral Reviews},
year = {1995},
volume = {19},
number = {2},
pages = {303--314}
}
@article{Castellano:2009kp,
author = {Castellano, Sergio},
title = {{Towards an information-processing theory of mate choice}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {6},
pages = {1493--1497},
month = dec
}
@article{Telford:1998wt,
author = {Telford, SR and Telford, SR and Jennions, MD},
title = {{Establishing cryptic female choice in animals}},
journal = {Trends In Ecology {\&} Evolution},
year = {1998},
volume = {13},
number = {6},
pages = {216--218}
}
@article{Hajirasouliha:2008hq,
author = {Hajirasouliha, I and Hormozdiari, F and Sahinalp, S C and Birol, I},
title = {{Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {13},
pages = {i32--i40},
month = jun
}
@article{McCollum:1996wb,
author = {McCollum, SA and VanBuskirk, J},
title = {{Costs and benefits of a predator-induced polyphenism in the gray treefrog Hyla chrysoscelis}},
journal = {Evolution},
year = {1996},
volume = {50},
number = {2},
pages = {583--593}
}
@article{Tamma:2012fz,
author = {Tamma, G and Procino, G and Svelto, M and Valenti, G},
title = {{Cell culture models and animal models for studying the patho-physiological role of renal aquaporins.}},
journal = {Cellular and Molecular Life Sciences},
year = {2012},
volume = {69},
number = {12},
pages = {1931--1946},
month = jun
}
@article{Ratzka:2012fd,
author = {Ratzka, Carolin and F{\"o}rster, Frank and F{\"o}rster, Frank and Liang, Chunguang and Liang, Chunguang and Kupper, Maria and Kupper, Maria and Dandekar, Thomas and Dandekar, Thomas and Feldhaar, Heike and Feldhaar, Heike and Gross, Roy and Gross, Roy},
title = {{Molecular Characterization of Antimicrobial Peptide Genes of the Carpenter Ant Camponotus floridanus}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e43036},
month = aug
}
@article{MGonigle:2012hs,
author = {M{\textquoteright}Gonigle, Leithen K and Mazzucco, Rupert and Otto, Sarah P and Dieckmann, Ulf},
title = {{Sexual selection enables long-term coexistence despite ecological equivalence.}},
journal = {Nature},
year = {2012},
volume = {484},
number = {7395},
pages = {506--509},
month = apr
}
@article{Zhang:2013ie,
author = {Zhang, Jin and Zhang, Jin and Li, Jianbo and Li, Jianbo and Liu, Bobin and Liu, Bobin and Zhang, Li and Zhang, Li and Chen, Jun and Chen, Jun and Lu, Mengzhu and Lu, Mengzhu},
title = {{Genome-wide analysis of the Populus Hsp90 gene family reveals differential expression patterns, localization, and heat stress responses}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {1--1},
month = aug
}
@article{Yearian:1976wa,
author = {Yearian, W C and Young, S Y},
title = {{Preliminary evaluation of virus diseases for control of eastern tent caterpillar and fall webworm}},
journal = {Arkansas Farm Res},
year = {1976},
volume = {Mar/Apr 1976, 15 (2)}
}
@article{Houot:2012jt,
author = {Houot, Benjamin and Houot, Benjamin and Fraichard, St{\'e}phane and Fraichard, St{\'e}phane and Greenspan, Ralph J and Greenspan, Ralph J and Ferveur, Jean-Fran{\c c}ois and Ferveur, Jean-Fran{\c c}ois},
title = {{Genes involved in sex pheromone discrimination in \textit{Drosophila} \textit{melanogaster} and their background-dependent effect.}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e30799}
}
@article{Dill:1999tu,
author = {Dill, LM and Hedrick, AV and Fraser, A},
title = {{Male mating strategies under predation risk: do females call the shots?}},
journal = {Behavioral Ecology},
year = {1999},
volume = {10},
number = {4},
pages = {452--461}
}
@article{Willing:2011wc,
author = {Willing, E M and Hoffmann, M and Klein, J D and Weigel, D and Dreyer, C},
title = {{Paired-end RAD-seq for \textit{de novo} assembly and marker design without available reference}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {16},
pages = {2187--2193}
}
@article{Jorde:1999uu,
author = {Jorde, PE and Jorde, PE and Palm, S and Palm, S and Ryman, N and Ryman, N},
title = {{Estimating genetic drift and effective population size from temporal shifts in dominant gene marker frequencies}},
journal = {Molecular Ecology},
year = {1999},
volume = {8},
number = {7},
pages = {1171--1178}
}
@article{Mobasheri:2007tt,
author = {Mobasheri, Ali and Marples, David and Young, Iain S and Floyd, Rachel V and Moskaluk, Christopher A and Frigeri, Antonio},
title = {{Distribution of the AQP4 Water Channel in Normal Human Tissues: Protein and Tissue Microarrays Reveal Expression in Several New Anatomical Locations, including the Prostate Gland Seminal Vesicles}},
journal = {Channels},
year = {2007},
volume = {1},
number = {1},
pages = {30--39},
month = jan
}
@article{He:2013it,
author = {He, Ziwen and He, Ziwen and Li, Xinnian and Li, Xinnian and Ling, Shaoping and Ling, Shaoping and Fu, Yun-Xin and Fu, Yun-Xin and Hungate, Eric and Hungate, Eric and Shi, Suhua and Wu, Chung-I},
title = {{Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {535}
}
@article{ClementZiza:2009fz,
author = {Clement-Ziza, Mathieu and Gentien, David and Lyonnet, Stanislas and Thiery, Jean-Paul and Besmond, Claude and Decraene, Charles},
title = {{Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {246}
}
@article{Castoe:2013bd,
author = {Castoe, Todd A and de Koning, A P Jason and Hall, Kathryn T and Card, Daren C and Schield, Drew R and Fujita, Matthew K and Ruggiero, Robert P and Degner, Jack F and Daza, Juan M and Gu, Wanjun and Reyes-Velasco, Jacobo and Shaney, Kyle J and Castoe, Jill M and Fox, Samuel E and Poole, Alex W and Polanco, Daniel and Dobry, Jason and Vandewege, Michael W and Li, Qing and Schott, Ryan K and Kapusta, Aur{\'e}lie and Minx, Patrick and Feschotte, C{\'e}dric and Uetz, Peter and Ray, David A and Hoffmann, Federico G and Bogden, Robert and Smith, Eric N and Chang, Belinda S W and Vonk, Freek J and Casewell, Nicholas R and Henkel, Christiaan V and Richardson, Michael K and Mackessy, Stephen P and Bronikowsi, Anne M and Yandell, Mark and Warren, Wesley C and Secor, Stephen M and Pollock, David D},
title = {{The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.}},
journal = {PNAS},
year = {2013},
volume = {110},
number = {51},
pages = {20645--20650},
month = dec
}
@article{Overbaugh:2011th,
author = {Overbaugh, Julie},
title = {{A healthy work-life balance can enhance research}},
journal = {Nature},
year = {2011},
volume = {477},
number = {7362},
pages = {27--28}
}
@article{Llopart:2008bv,
author = {Llopart, A and Comeron, J M},
title = {{Recurrent Events of Positive Selection in Independent \textit{Drosophila} Lineages at the Spermatogenesis Gene roughex}},
journal = {Genetics},
year = {2008},
volume = {179},
number = {2},
pages = {1009--1020},
month = may
}
@article{White:2008fv,
author = {White, Paula P},
title = {{Maternal response to neonatal sibling conflict in the spotted hyena, Crocuta crocuta}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {3},
pages = {353--361},
month = jun
}
@article{Wright:2013ki,
author = {Wright, G A and Wright, G A and Baker, D D and Baker, D D and Palmer, M J and Palmer, M J and Stabler, D and Stabler, D and Mustard, J A and Mustard, J A and Power, E F and Power, E F and Borland, A M and Borland, A M and Stevenson, P C and Stevenson, P C},
title = {{Caffeine in Floral Nectar Enhances a Pollinator's Memory of Reward}},
journal = {Science (New York, NY)},
year = {2013},
volume = {339},
number = {6124},
pages = {1202--1204},
month = mar
}
@article{Morin:2009et,
author = {Morin, Phillip A and Manaster, Carl and Mesnick, Sarah L and Holland, Robert},
title = {{Normalization and binning of historical and multi-source microsatellite data: overcoming the problems of allele size shift with allelogram}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {6},
pages = {1451--1455},
month = nov
}
@article{Hughes:2008kw,
author = {Hughes, Austin L and Friedman, Robert},
title = {{Codon-based tests of positive selection, branch lengths, and the evolution of mammalian immune system genes}},
journal = {Immunogenetics},
year = {2008},
volume = {60},
number = {9},
pages = {495--506},
month = jun
}
@article{Brotherton:1997tj,
author = {Brotherton, PNM and Pemberton, JM and Komers, PE and Malarky, G},
title = {{Genetic and behavioural evidence of monogamy in a mammal, Kirk's dik-dik (\textit{Madoqua kirkii})}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1382},
pages = {675--681}
}
@article{Kumanovics:2003ks,
author = {Kum{\'a}novics, Attila and Takada, Toyoyuki and Lindahl, Kirsten Fischer},
title = {{Genomic organization of the mammalian MHC.}},
journal = {Annual Review of Immunology},
year = {2003},
volume = {21},
pages = {629--657}
}
@article{Dawson:2001tq,
author = {Dawson, MN and Dawson, MN},
title = {{Phylogeography in coastal marine animals: a solution from California?}},
journal = {Journal of Biogeography},
year = {2001},
volume = {28},
number = {6},
pages = {723--736}
}
@article{Wakano:2005wu,
author = {Wakano, JY and Ihara, Y},
title = {{Evolution of male parental care and female multiple mating: Game-theoretical and two-locus diploid models}},
journal = {The American Naturalist},
year = {2005},
volume = {166},
number = {2},
pages = {E32--E44}
}
@article{Anonymous:LdJifukj,
title = {{Ecology 1990 BALDWIN}},
year = {2004},
pages = {12},
month = apr
}
@article{Kokko:1997wr,
author = {Kokko, H and Linstrom, J},
title = {{Measuring the mating skew}},
journal = {The American Naturalist},
year = {1997},
volume = {149},
number = {4},
pages = {794--799}
}
@article{Greenwood:1980td,
author = {Greenwood, PJ and Greenwood, PJ},
title = {{Mating Systems, Philopatry and Dispersal in Birds and Mammals}},
journal = {Animal Behaviour},
year = {1980},
volume = {28},
number = {NOV},
pages = {1140--1162}
}
@article{Anonymous:Q-5DjmLd,
title = {{a list of nematode parasites from california mammals}},
year = {2005},
pages = {8},
month = apr
}
@article{Briskie:1993tu,
author = {Briskie, JV},
title = {{ANATOMICAL ADAPTATIONS TO SPERM COMPETITION IN SMITHS LONGSPURS AND OTHER POLYGYNANDROUS PASSERINES}},
journal = {Auk},
year = {1993},
volume = {110},
number = {4},
pages = {875--888}
}
@article{Dixon:2009kq,
author = {Dixon, C J},
title = {{OLFinder-a program which disentangles DNA sequences containing heterozygous indels}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {2},
pages = {335--340},
month = mar
}
@article{Anonymous:LySQCMUu,
title = {{A Catalogue of the Protozoa and Helminths of North American Rodents}},
year = {2005},
pages = {15},
month = apr
}
@article{Consuegra:2011ita,
author = {Consuegra, S and Consuegra, S and de Eyto, E and de Eyto, E and Mcginnity, P and Mcginnity, P and Stet, R J M and Stet, R J M and Jordan, W C and Jordan, W C},
title = {{Contrasting responses to selection in class I and class II$\alpha$ major histocompatibility-linked markers in salmon}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {2},
pages = {143--154},
month = jan
}
@article{Walczak:2012ez,
author = {Walczak, A M and Nicolaisen, L E and Plotkin, J B and Desai, M M},
title = {{The Structure of Genealogies in the Presence of Purifying Selection: A Fitness-Class Coalescent}},
journal = {Genetics},
year = {2012},
volume = {190},
number = {2},
pages = {753--779},
month = feb
}
@article{Kukekova:2011uz,
author = {Kukekova, AV and Temnykh, SV and Johnson, JL and Trut, LN},
title = {{Genetics of behavior in the silver fox}},
journal = {Mammalian {\ldots}},
year = {2011}
}
@article{Reuveni:2010ii,
author = {Reuveni, Eli and Birney, Ewan and Gross, Cornelius T},
title = {{The consequence of natural selection on genetic variation in the mouse}},
journal = {Genomics},
year = {2010},
volume = {95},
number = {4},
pages = {196--202},
month = apr
}
@article{Whitehead:2010ek,
author = {Whitehead, A and Triant, D A and Champlin, D and Nacci, D},
title = {{Comparative transcriptomics implicates mechanisms of evolved pollution tolerance in a killifish population}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {23},
pages = {5186--5203},
month = sep
}
@article{Roughgarden:2006bk,
author = {Roughgarden, J},
title = {{Reproductive Social Behavior: Cooperative Games to Replace Sexual Selection}},
journal = {Science (New York, NY)},
year = {2006},
volume = {311},
number = {5763},
pages = {965--969},
month = feb
}
@article{Matvienko:2009wq,
author = {Matvienko},
title = {{Lettuce transcriptome sequencing and assembly}},
year = {2009},
pages = {1--32},
month = aug
}
@article{Taylor:2008bp,
author = {Taylor, Sabrina S and Boessenkool, Sanne and Jamieson, Ian G},
title = {{Genetic monogamy in two long-lived New Zealand passerines}},
journal = {Journal of Avian Biology},
year = {2008},
volume = {39},
number = {5},
pages = {579--583}
}
@article{Wedell:2006ej,
author = {Wedell, Nina and Kvarnemo, Charlotta and Lessells, C {Kate M and Tregenza, Tom},
title = {{Sexual conflict and life histories}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
number = {5},
pages = {999--1011},
month = may
}
@article{Chesh:2012jd,
author = {Chesh, Adrian S and Mabry, Karen E and Keane, Brian and Noe, Douglas A and Noe, Douglas A and Solomon, Nancy G},
title = {{Are body mass and parasite load related to social partnerships and mating in \textit{Microtus ochrogaster}?}},
journal = {Journal of Mammalogy},
year = {2012},
volume = {93},
number = {1},
pages = {229--238},
month = feb
}
@article{Zhang:2010gj,
author = {Zhang, Zhisheng and Zhang, Zhisheng and Mo, Delin and Mo, Delin and Cong, Peiqing and Cong, Peiqing and He, Zuyong and He, Zuyong and Ling, Fei and Ling, Fei and Li, Anning and Li, Anning and Niu, Yuna and Niu, Yuna and Zhao, Xiao and Zhao, Xiao and Zhou, Chunyan and Zhou, Chunyan and Chen, Yaosheng and Chen, Yaosheng},
title = {{Molecular cloning, expression patterns and subcellular localization of porcine TMCO1 gene.}},
journal = {Molecular biology reports},
year = {2010},
volume = {37},
number = {3},
pages = {1611--1618},
month = mar
}
@article{Arellano:2003wd,
author = {Arellano, E and Rogers, DS and Cervantes, FA},
title = {{Genic differentiation and phylogenetic relationships among tropical harvest mice (Reithrodontomys : subgenus Aporodon)}},
journal = {Journal of Mammalogy},
year = {2003},
volume = {84},
number = {1},
pages = {129--143}
}
@article{Chown:2003vm,
author = {Chown, SL},
title = {{Water-balance characteristics respond to changes in body size in subantarctic weevils}},
journal = {Physiological and Biochemical Zoology},
year = {2003},
volume = {76},
number = {5},
pages = {634--643}
}
@article{Avarre:2013fn,
author = {Avarre, J C and Avarre, J C and Dugu{\'e}, R and Dugu{\'e}, R and Alonso, P and Alonso, P and Diombokho, A and Diombokho, A and Joffrois, C and Joffrois, C and Faivre, N and Faivre, N and Cochet, C and Cochet, C and Durand, J D and Durand, J D},
title = {{Analysis of the black-chinned tilapia Sarotherodon melanotheron heudelotiireproducing under a wide range of salinities: from RNA-seq to candidate genes}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = jul
}
@article{Curno:2009bt,
author = {Curno, O and Behnke, J M and McElligott, A G and Reader, T and Barnard, C J},
title = {{Mothers produce less aggressive sons with altered immunity when there is a threat of disease during pregnancy}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1659},
pages = {1047--1054},
month = mar
}
@article{Lambert:1994tl,
author = {Lambert, DM and Millar, CD and JACK, K and ANDERSON, S and CRAIG, JL},
title = {{SINGLE-LOCUS AND MULTILOCUS DNA-FINGERPRINTING OF COMMUNALLY BREEDING PUKEKO - DO COPULATIONS OR DOMINANCE ENSURE REPRODUCTIVE SUCCESS}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {20},
pages = {9641--9645}
}
@article{Philippe:2011bo,
author = {Philippe, Herv{\'e} and Brinkmann, Henner and Copley, Richard R and Moroz, Leonid L and Nakano, Hiroaki and Poustka, Albert J and Wallberg, andreas and Peterson, Kevin J and Telford, Maximilian J},
title = {{Acoelomorph flatworms are deuterostomes related to Xenoturbella}},
journal = {Nature},
year = {2011},
volume = {470},
number = {7333},
pages = {255--258},
month = feb
}
@article{Cheviron:2013ei,
author = {Cheviron, Zachary A and Connaty, Alex D and McClelland, Grant B and Storz, Jay F},
title = {{FUNCTIONAL GENOMICS OF ADAPTATION TO HYPOXIC COLD-STRESS IN HIGH-ALTITUDE DEER MICE: TRANSCRIPTOMIC PLASTICITY AND THERMOGENIC PERFORMANCE}},
journal = {Evolution},
year = {2013},
volume = {68},
number = {1},
pages = {48--62},
month = sep
}
@article{Ortego:2009kh,
author = {Ortego, J and Calabuig, G and Bonal, R and MU OZ, A and Aparicio, J M and Cordero, P J},
title = {{Temporal variation of heterozygosity-based assortative mating and related benefits in a lesser kestrel population}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {12},
pages = {2488--2495},
month = dec
}
@article{Fischer:2011db,
author = {Fischer, Martin C and Foll, Matthieu and Excoffier, Laurent and Heckel, Gerald},
title = {{Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis)}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {7},
pages = {1450--1462},
month = feb
}
@article{Nelson:1977uh,
author = {Nelson, K and Nelson, K and Hedgecock, D and Hedgecock, D},
title = {{Electrophoretic evidence of multiple paternity in the lobster Homarus americanus (Milne-Edwards)}},
journal = {The American Naturalist},
year = {1977},
pages = {361--365}
}
@article{Maruvka:2009fd,
author = {Maruvka, Yosef E and Shnerb, Nadav M and Bergstrom, Carl T},
title = {{Polymorphism Data Can Reveal the Origin of Species Abundance Statistics}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {4},
pages = {e1000359},
month = apr
}
@article{Matsumura:2009dt,
author = {Matsumura, Shun'ichi and Yokoyama, Jun and Fukuda, Tatsuya and Maki, Masayuki},
title = {{Intraspecific differentiation of Limonium wrightii (Plumbaginaceae) on northwestern Pacific Islands: Rate heterogeneity in nuclear rDNA and its distance-independent geographic structure}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2009},
volume = {53},
number = {3},
pages = {1032--1036},
month = dec
}
@article{NIELSEN:2007cc,
author = {Nielsen, S and Kwon, T H and Kwon, T H and Frokiaer, J and Frokiaer, J and Agre, P and Agre, P},
title = {{Regulation and dysregulation of aquaporins in water balance disorders}},
journal = {Journal of Internal Medicine},
year = {2007},
volume = {261},
number = {1},
pages = {53--64},
month = jan
}
@article{Gomulkiewicz:2009dw,
author = {Gomulkiewicz, Richard and Houle, David},
title = {{Demographic and Genetic Constraints on Evolution}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {6},
pages = {E218--E229},
month = dec
}
@article{Hubisz:2011ba,
author = {Hubisz, Melissa J and Lin, Michael F and Kellis, Manolis and Siepel, Adam},
title = {{Error and Error Mitigation in Low-Coverage Genome Assemblies}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {2},
pages = {e17034},
month = feb
}
@article{Bordes:2009je,
author = {Bordes, Fr{\'e}d{\'e}ric and Morand, Serge and Kelt, Douglas A and van Vuren, Dirk H},
title = {{Home Range and Parasite Diversity in Mammals}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {4},
pages = {467--474},
month = apr
}
@article{Hunt:2013hj,
author = {Hunt, Martin and Kikuchi, Taisei and Sanders, Mandy and Newbold, Chris and Berriman, Matthew and Otto, Thomas D},
title = {{REAPR: a universal tool for genome assembly evaluation.}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {5},
pages = {R47},
month = may
}
@article{Schuelke:2000ug,
author = {Schuelke, M},
title = {{An economic method for the fluorescent labeling of PCR fragments}},
journal = {Nature Biotechnology},
year = {2000},
volume = {18},
number = {2},
pages = {233--234}
}
@article{Albrecht:2012km,
author = {Albrecht, T and Kleven, O and Kreisinger, J and Laskemoen, T and Omotoriogun, T C and Ottosson, U and Reif, J and Sedlacek, O and Horak, D and Robertson, R J and Lifjeld, J T},
title = {{Sperm competition in tropical versus temperate zone birds}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1752},
pages = {20122434--20122434},
month = dec
}
@article{Broquet:2009cb,
author = {Broquet, Thomas and Jaqui{\'e}ry, Julie and Perrin, Nicolas},
title = {{OPPORTUNITY FOR SEXUAL SELECTION AND EFFECTIVE POPULATION SIZE IN THE LEK-BREEDING EUROPEAN TREEFROG ( HYLA ARBOREA).}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {3},
pages = {674--683},
month = mar
}
@article{Arnold:1994un,
author = {Arnold, SJ and Duvall, D},
title = {{Animal Mating Systems: A Synthesis Based on Selection Theory}},
journal = {The American Naturalist},
year = {1994},
volume = {143},
number = {2},
pages = {317--348}
}
@article{LopezGranero:2013cr,
author = {L{\'o}pez-Granero, Caridad and Cardona, Diana and Gim{\'e}nez, Estela and Lozano, Rafael and Barril, Jos{\'e} and S{\'a}nchez-Santed, Fernando and Ca{\~n}adas, Fernando},
title = {{Chronic dietary exposure to chlorpyrifos causes behavioral impairments, low activity of brain membrane-bound acetylcholinesterase, and increased brain acetylcholinesterase-R mRNA.}},
journal = {Toxicology},
year = {2013},
volume = {308},
pages = {41--49},
month = jun
}
@article{Wilkening:2009cb,
author = {Wilkening, Stefan and Chen, Bowang and Bermejo, Justo Lorenzo and Canzian, Federico},
title = {{Is there still a need for candidate gene approaches in the era of genome-wide association studies?}},
journal = {Genomics},
year = {2009},
volume = {93},
number = {5},
pages = {415--419},
month = may
}
@article{Creel:1990vr,
author = {Creel, S},
title = {{HOW TO MEASURE INCLUSIVE FITNESS}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1990},
volume = {241},
number = {1302},
pages = {229--231}
}
@article{Bijma:2010gf,
author = {Bijma, P},
title = {{Fisher{\textquoteright}s fundamental theorem of inclusive fitness and the change in fitness due to natural selection when conspecifics interact}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {1},
pages = {194--206},
month = jan
}
@article{Sorber:2008jn,
author = {Sorber, Katherine and Chiu, Charles and Webster, Dale and Dimon, Michelle and Ruby, J Graham and Hekele, Armin and Derisi, Joseph L and Batzer, Mark A},
title = {{The Long March: A Sample Preparation Technique that Enhances Contig Length and Coverage by High-Throughput Short-Read Sequencing}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {10},
pages = {e3495},
month = oct
}
@article{Han:2008dw,
author = {Han, Jiali and Kraft, Peter and Nan, Hongmei and Guo, Qun and Chen, Constance and Qureshi, Abrar and Hankinson, Susan E and Hu, Frank B and Duffy, David L and Zhao, Zhen Zhen and Martin, Nicholas G and Montgomery, Grant W and Hayward, Nicholas K and Thomas, Gilles and Hoover, Robert N and Chanock, Stephen and Hunter, David J},
title = {{A Genome-Wide Association Study Identifies Novel Alleles Associated with Hair Color and Skin Pigmentation}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {5},
pages = {e1000074},
month = may
}
@article{Achtman:2004hr,
author = {Achtman, M},
title = {{Microevolution and history of the plague bacillus, Yersinia pestis}},
journal = {Proceedings of the National Academy of Sciences},
year = {2004},
volume = {101},
number = {51},
pages = {17837--17842},
month = dec
}
@article{SCHECK:1980wk,
author = {SCHECK, SH and FLEHARTY, ED},
title = {{SUBTERRANEAN BEHAVIOR OF THE ADULT 13-LINED GROUND-SQUIRREL (SPERMOPHILUS-TRIDECEMLINEATUS)}},
journal = {American Midland Naturalist},
year = {1980},
volume = {103},
number = {1},
pages = {191--195}
}
@article{Langmore:2002cu,
author = {Langmore, N E and Cockrem, J F and Candy, E J},
title = {{Competition for male reproductive investment elevates testosterone levels in female dunnocks, \textit{Prunella modularis}}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2002},
volume = {269},
number = {1508},
pages = {2473--2478},
month = dec
}
@article{Srivastava:2010ie,
author = {Srivastava, Mansi and Simakov, Oleg and Chapman, Jarrod and Fahey, Bryony and Gauthier, Marie E A and Mitros, Therese and Richards, Gemma S and Conaco, Cecilia and Dacre, Michael and Hellsten, Uffe and Larroux, Claire and Putnam, Nicholas H and Stanke, Mario and Adamska, Maja and Darling, Aaron and Degnan, Sandie M and Oakley, Todd H and Plachetzki, David C and Zhai, Yufeng and Adamski, Marcin and Calcino, andrew and Cummins, Scott F and Goodstein, David M and Harris, Christina and Jackson, Daniel J and Leys, Sally P and Shu, Shengqiang and Woodcroft, Ben J and Vervoort, Michel and Kosik, Kenneth S and Manning, Gerard and Degnan, Bernard M and Rokhsar, Daniel S},
title = {{The Amphimedon queenslandica genome and the evolution of animal complexity}},
journal = {Nature},
year = {2010},
volume = {466},
number = {7307},
pages = {720--726},
month = aug
}
@article{Sinervo:1996ta,
author = {Sinervo, B and Lively, CM},
title = {{The rock-paper-scissors game and the evolution of alternative male strategies}},
journal = {Nature},
year = {1996},
volume = {380},
number = {6571},
pages = {240--243}
}
@article{Nagy:1988vl,
author = {Nagy, K A},
title = {{Seasonal patterns of water and energy balance in desert vertebrates}},
journal = {Journal of Arid Environments},
year = {1988}
}
@article{Venditti:2011bh,
author = {Venditti, Chris and Meade, andrew and Pagel, Mark},
title = {{Multiple routes to mammalian diversity}},
journal = {Nature},
year = {2011},
volume = {479},
number = {7373},
pages = {393--396},
month = nov
}
@article{Devarajan:2010he,
author = {Devarajan, Prasad and Krawczeski, Catherine D and Nguyen, Mai T and Kathman, Thelma and Wang, Zhu and Parikh, Chirag R},
title = {{Proteomic Identification of Early Biomarkers of Acute Kidney Injury After Cardiac Surgery in Children}},
journal = {American Journal of Kidney Diseases},
year = {2010},
volume = {56},
number = {4},
pages = {632--642},
month = oct
}
@article{Boulet:2009kn,
author = {Boulet, Maryl{\`e}ne and Charpentier, Marie JE and Drea, Christine M},
title = {{Decoding an olfactory mechanism of kin recognition and inbreeding avoidance in a primate}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {281}
}
@article{Chen:2000tg,
author = {Chen, JJ and Rowley, JD and Rowley, JD and Wang, SM and Wang, SM},
title = {{Generation of longer cDNA fragments from serial analysis of gene expression tags for gene identification}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {1},
pages = {349--353}
}
@article{Wang:2012dk,
author = {Wang, Xin Victoria and Wang, Xin Victoria and Blades, Natalie and Blades, Natalie and Ding, Jie and Ding, Jie and Sultana, Razvan and Sultana, Razvan and Parmigiani, Giovanni and Parmigiani, Giovanni},
title = {{Estimation of sequencing error rates in short reads}},
journal = {BMC Bioinformatics},
year = {2012},
volume = {13},
number = {1},
pages = {185}
}
@article{Nakamura:1995vo,
author = {Nakamura, M},
title = {{TERRITORY AND GROUP LIVING IN THE POLYGYNANDROUS ALPINE ACCENTOR PRUNELLA-COLLARIS}},
journal = {Ibis},
year = {1995},
volume = {137},
number = {4},
pages = {477--483}
}
@article{Venna:2003vf,
author = {Venna, J and Kaski, S and Peltonen, J},
title = {{Visualizations for assessing convergence and mixing of MCMC}},
journal = {Machine Learning: Ecml 2003},
year = {2003},
volume = {2837},
pages = {432--443}
}
@article{Miller:2008gk,
author = {Miller, Webb and Drautz, Daniela I and Ratan, Aakrosh and Pusey, Barbara and Qi, Ji and Lesk, Arthur M and Tomsho, Lynn P and Packard, Michael D and Zhao, Fangqing and Sher, andrei and Tikhonov, Alexei and Raney, Brian and Patterson, Nick and Lindblad-Toh, Kerstin and Lander, Eric S and Knight, James R and Irzyk, Gerard P and Fredrikson, Karin M and Harkins, Timothy T and Sheridan, Sharon and Pringle, Tom and Schuster, Stephan C},
title = {{Sequencing the nuclear genome of the extinct woolly mammoth}},
journal = {Nature},
year = {2008},
volume = {456},
number = {7220},
pages = {387--390},
month = nov
}
@article{GAO:2012df,
author = {GAO, JIE and GAO, JIE and WANG, BAOSHENG and WANG, BAOSHENG and MAO, JIAN-FENG and MAO, JIAN-FENG and INGVARSSON, P{\"A}R and INGVARSSON, P{\"A}R and ZENG, QING-YIN and ZENG, QING-YIN and WANG, XIAO-RU and WANG, XIAO-RU},
title = {{Demography and speciation history of the homoploid hybrid pine Pinus densata on the Tibetan Plateau}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = jul
}
@article{MeyerLucht:2010bs,
author = {Meyer-Lucht, Yvonne and Otten, Celine and P{\"u}ttker, Thomas and Pardini, Renata and Metzger, Jean Paul and Sommer, Simone},
title = {{Variety matters: adaptive genetic diversity and parasite load in two mouse opossums from the Brazilian Atlantic forest}},
journal = {Conservation Genetics},
year = {2010},
volume = {11},
number = {5},
pages = {2001--2013},
month = may
}
@article{Becher:2004eu,
author = {Becher, S A and Magurran, A E},
title = {{Multiple mating and reproductive skew in Trinidadian guppies}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2004},
volume = {271},
number = {1543},
pages = {1009--1014},
month = may
}
@article{Stockley:1997uf,
author = {Stockley, P},
title = {{No evidence of sperm selection by female common shrews}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1387},
pages = {1497--1500}
}
@article{Knepper:1994wa,
author = {Knepper, MA},
title = {{The Aquaporin Family of Molecular Water Channels}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {14},
pages = {6255--6258}
}
@article{Acinas:2004fb,
author = {Acinas, Silvia G and Klepac-Ceraj, Vanja and Hunt, Dana E and Pharino, Chanathip and Ceraj, Ivica and Distel, Daniel L and Polz, Martin F},
title = {{Fine-scale phylogenetic architecture of a complex bacterial community}},
journal = {Nature},
year = {2004},
volume = {430},
number = {6999},
pages = {551--554},
month = jul
}
@article{KosakovskyPond:2005du,
author = {Pond, S L K and Frost, S D W and Muse, S V},
title = {{HyPhy: hypothesis testing using phylogenies}},
journal = {Bioinformatics (Oxford, England)},
year = {2005},
volume = {21},
number = {5},
pages = {676--679},
month = feb
}
@article{Vicens:2009gk,
author = {Vicens, Quentin and Bourne, Philip E},
title = {{Ten Simple Rules To Combine Teaching and Research}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {4},
pages = {e1000358},
month = apr
}
@article{JONES:1993wo,
author = {JONES, IL and HUNTER, FM},
title = {{MUTUAL SEXUAL SELECTION IN A MONOGAMOUS SEABIRD}},
journal = {Nature},
year = {1993},
volume = {362},
number = {6417},
pages = {238--239}
}
@article{Wawer:2005we,
author = {Wawer, MJ and Gray, RH and Sewankambo, NK and Serwadda, D and Li, XB and Laeyendecker, O and Kiwanuka, N and Kigozi, G and Kiddugavu, M and Lutalo, T and Nalugoda, F and Wabwire-Mangen, F and Meehan, MP and Quinn, TC},
title = {{Rates of HIV-1 transmission per coital act, by stage of HIV-1 infection, in Rakai, Uganda}},
journal = {The Journal of infectious diseases},
year = {2005},
volume = {191},
number = {9},
pages = {1403--1409}
}
@article{Dewoody:2013bq,
author = {Dewoody, J andrew and Abts, Kendra C and Abts, Kendra C and Fahey, Anna L and Fahey, Anna L and Ji, Yanzhu and Ji, Yanzhu and Kimble, Steven J A and Kimble, Steven J A and Marra, Nicholas J and Marra, Nicholas J and Wijayawardena, Bhagya K and Wijayawardena, Bhagya K and Willoughby, Janna R and Willoughby, Janna R},
title = {{of contigs and quagmires: next-generation sequencing pitfalls associated with transcriptomic studies}},
journal = {Molecular Ecology Resources},
year = {2013},
volume = {13},
number = {4},
pages = {551--558},
month = apr
}
@article{Byers:2005ww,
author = {Byers, JA and Wiseman, PA and Jones, L and Roffe, TJ},
title = {{A large cost of female mate sampling in pronghorn}},
journal = {The American Naturalist},
year = {2005},
volume = {166},
number = {6},
pages = {661--668}
}
@article{Srivastava:2011ut,
author = {Srivastava, Sudeep and Chen, Lieng},
title = {{GPseq}},
year = {2011},
pages = {1--22},
month = jan
}
@article{Spear:2010cl,
author = {Spear, Gregory T and Spear, Gregory T and Gilbert, Douglas and Sikaroodi, Masoumeh and Sikaroodi, Masoumeh and Doyle, Lara and Doyle, Lara and Green, Linda and Green, Linda and Gillevet, Patrick M and Gillevet, Patrick M and Landay, Alan L and Veazey, Ronald S and Veazey, Ronald S},
title = {{Identification of rhesus macaque genital microbiota by 16S pyrosequencing shows similarities to human bacterial vaginosis: implications for use as an animal model for HIV vaginal infection.}},
journal = {AIDS research and human retroviruses},
year = {2010},
volume = {26},
number = {2},
pages = {193--200},
month = feb
}
@article{Criscione:2009bb,
author = {Criscione, Charles D and Valentim, Claudia LL and Hirai, Hirohisa and Loverde, Philip T and anderson, Timothy JC},
title = {{Genomic linkage map of the human blood fluke Schistosoma mansoni}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {6},
pages = {R71}
}
@article{GRATTEN:2012dw,
author = {GRATTEN, J and GRATTEN, J and PILKINGTON, J G and PILKINGTON, J G and BROWN, E A and BROWN, E A and Clutton-Brock, TH and PEMBERTON, J M and PEMBERTON, J M and Slate, J and Slate, J},
title = {{Selection and microevolution of coat pattern are cryptic in a wild population of sheep.}},
journal = {Molecular Ecology},
year = {2012},
month = mar
}
@article{Storz:2001vu,
author = {Storz, JF and Storz, JF and Bhat, HR and Bhat, HR and Kunz, TH and Kunz, TH},
title = {{Genetic consequences of polygyny and social structure in an Indian fruit bat, Cynopterus sphinx. II. Variance in male mating success and effective population size}},
journal = {Evolution},
year = {2001},
volume = {55},
number = {6},
pages = {1224--1232}
}
@article{Yang:2012jc,
author = {Yang, Ziheng and Rannala, Bruce},
title = {{Molecular phylogenetics: principles and practice}},
year = {2012},
pages = {1--12},
month = mar
}
@article{Wiegmann:2011ks,
author = {Wiegmann, B M and Trautwein, M D and Winkler, I S and Barr, N B and Kim, J W and Lambkin, C and Bertone, M A and Cassel, B K and Bayless, K M and Heimberg, A M and Wheeler, B M and Peterson, K J and Pape, T and Sinclair, B J and Skevington, J H and Blagoderov, V and Caravas, J and Kutty, S N and Schmidt-Ott, U and Kampmeier, G E and Thompson, F C and Grimaldi, D A and Beckenbach, A T and Courtney, G W and Friedrich, M and Meier, R and Yeates, D K},
title = {{Episodic radiations in the fly tree of life}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {14},
pages = {5690--5695},
month = apr
}
@article{Tang:2008ey,
author = {Tang, Jifeng and Baldwin, Samantha J and Jacobs, Jeanne ME and van der Linden, C Gerard and Voorrips, Roeland E and Leunissen, Jack AM and van Eck, Herman and Vosman, Ben},
title = {{Large-scale identification of polymorphic microsatellites using an \textit{in silico} approach}},
journal = {BMC Bioinformatics},
year = {2008},
volume = {9},
number = {1},
pages = {374}
}
@article{Shorter:2014kw,
author = {Shorter, Kimberly R and Owen, Amy and anderson, Vanessa and Hall-South, April C and Hayford, Samantha and Cakora, Patricia and Crossland, Janet P and Georgi, Velina R M and Perkins, Amy and Kelly, Sandra J and Felder, Michael R and Vrana, Paul B},
title = {{Natural Genetic Variation Underlying Differences in \textit{Peromyscus} Repetitive and Social/Aggressive Behaviors}},
journal = {Behavior genetics},
year = {2014},
month = jan
}
@article{Kohda:2009ei,
author = {Kohda, Masanori and Kohda, Masanori and Heg, Dik and Heg, Dik and Makino, Yoshimi and Makino, Yoshimi and Takeyama, Tomohiro and Takeyama, Tomohiro and Shibata, Junya and Shibata, Junya and Watanabe, Katsutoshi and Watanabe, Katsutoshi and Munehara, Hiroyuki and Munehara, Hiroyuki and Hori, Michio and Awata, Satoshi and Awata, Satoshi},
title = {{Living on the wedge: female control of paternity in a cooperatively polyandrous cichlid.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1676},
pages = {4207--4214},
month = dec
}
@article{Moore:2010cg,
author = {Moore, J H and Asselbergs, F W and Williams, S M},
title = {{Bioinformatics challenges for genome-wide association studies}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {4},
pages = {445--455},
month = feb
}
@article{Schmidt:1999uy,
author = {Schmidt, CA},
title = {{Variation and congruence of microsatellite markers for \textit{Peromyscus} leucopus}},
journal = {Journal of Mammalogy},
year = {1999},
volume = {80},
number = {2},
pages = {522--529}
}
@article{Monteiro:2006gc,
author = {Monteiro, N M and Berglund, A and Vieira, M N and Almada, V C},
title = {{Reproductive migrations of the sex role reversed pipefish Nerophis lumbriciformis (Pisces; Syngnathidae)}},
journal = {Journal of Fish Biology},
year = {2006},
volume = {69},
number = {1},
pages = {66--74}
}
@article{Dietrich:2004ts,
author = {Dietrich, V and Schmoll, T and Winkel, W and Epplen, JT and Lubjuhn, T},
title = {{Pair identity - An important factor concerning variation in extra-pair paternity in the coal tit (Parus ater)}},
journal = {Behaviour},
year = {2004},
volume = {141},
pages = {817--835}
}
@article{Mansingh:1974tb,
author = {Mansingh, A},
title = {{Studies on insect dormancy. II. Relationship of cold-hardiness to diapause and quiescence in the eastern tent caterpillar, \textit{Malacosoma} \textit{americanum} (Fab.), (Lasiocampidae: Lepidoptera).}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {1974},
volume = {52},
number = {5},
pages = {629--637},
month = may
}
@article{Bae:2011kx,
author = {Bae, Eun-Kyung and Bae, Eun-Kyung and Lee, Hyoshin and Lee, Hyoshin and Lee, Jae-Soon and Lee, Jae-Soon and Noh, Eun-Woon and Noh, Eun-Woon},
title = {{Drought, salt and wounding stress induce the expression of the plasma membrane intrinsic protein 1 gene in poplar (Populus alba{\texttimes}P. tremula var. glandulosa).}},
journal = {Gene},
year = {2011},
volume = {483},
number = {1-2},
pages = {43--48},
month = sep
}
@article{Zeisset:2009cf,
author = {Zeisset, I and Beebee, T J C},
title = {{Larval fitness, microsatellite diversity and MHC class II diversity in common frog (Rana temporaria) populations}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {5},
pages = {423--430},
month = nov
}
@article{Laakkonen:2003vd,
author = {Laakkonen, J},
title = {{Effect of arboreal activity on species composition and abundance estimates of rodents in a chaparral habitat in southern California}},
journal = {American Midland Naturalist},
year = {2003},
volume = {150},
number = {2},
pages = {348--351}
}
@article{Anonymous:DgF7v2vK,
author = {Deshpande, Viraj and Fung, Eric DK and Pham, Son and Bafna, Vineet},
title = {{Cerulean: A hybrid assembly using high throughput short and long reads}},
journal = {arXiv.org},
year = {2013},
eprint = {1307.7933v1},
eprinttype = {arxiv},
eprintclass = {q-bio.QM},
month = jul
}
@article{Kesler:2007vsa,
author = {Kesler, Dylan C and Haig, Susan M},
title = {{Territoriality, prospecting, and dispersal in cooperatively breeding micronesian kingfishers (Todiramphus cinnamominus reichenbachii)}},
journal = {Auk},
year = {2007},
volume = {124},
number = {2},
pages = {381--395}
}
@article{Takeshima:2001tc,
author = {Takeshima, S and Ikegami, M and Morita, M and Nakai, Y and Aida, Y},
title = {{Identification of new cattle BoLA-DRB3 alleles by sequence-based typing}},
journal = {Immunogenetics},
year = {2001},
volume = {53},
number = {1},
pages = {74--81}
}
@article{Kuchta:2009gy,
author = {Kuchta, Shawn R and Parks, Duncan S and Wake, David B},
title = {{Pronounced phylogeographic structure on a small spatial scale: Geomorphological evolution and lineage history in the salamander ring species Ensatina eschscholtzii in central coastal California}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2009},
volume = {50},
number = {2},
pages = {240--255},
month = feb
}
@article{Brightwell:2007ch,
author = {Brightwell, R J and Silverman, J},
title = {{Argentine ant foraging activity and interspecific competition in complete vs. queenless and broodless colonies}},
journal = {Insectes Sociaux},
year = {2007},
volume = {54},
number = {4},
pages = {329--333},
month = jul
}
@article{Bornmann:2008ip,
author = {Bornmann, Lutz and Wallon, Gerlind and Ledin, Anna},
title = {{Does the Committee Peer Review Select the Best Applicants for Funding? An Investigation of the Selection Process for Two European Molecular Biology Organization Programmes}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {10},
pages = {e3480},
month = oct
}
@article{Grafen:1982te,
author = {Grafen, A},
title = {{HOW NOT TO MEASURE INCLUSIVE FITNESS}},
journal = {Nature},
year = {1982},
volume = {298},
number = {5873},
pages = {425--426}
}
@article{Cheviron:2012br,
author = {Cheviron, Zachary A and Cheviron, Zachary A and Bachman, Gwendolyn C and Bachman, Gwendolyn C and Connaty, Alex D and Connaty, Alex D and McClelland, Grant B and McClelland, Grant B and Storz, Jay F and Storz, Jay F},
title = {{Regulatory changes contribute to the adaptive enhancement of thermogenic capacity in high-altitude deer mice.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {22},
pages = {8635--8640},
month = may
}
@article{Chen:2012di,
author = {Chen, Yiwen and Chen, Yiwen and Negre, Nicolas and Li, Qunhua and Li, Qunhua and Mieczkowska, Joanna O and Mieczkowska, Joanna O and Slattery, Matthew and Slattery, Matthew and Liu, Tao and Liu, Tao and Zhang, Yong and Kim, Tae Kyung and Kim, Tae Kyung and He, Housheng Hansen and He, Housheng Hansen and Zieba, Jennifer and Zieba, Jennifer and Ruan, Yijun and Bickel, Peter J and Bickel, Peter J and Myers, Richard M and Wold, Barbara J and Wold, Barbara J and White, Kevin P and Lieb, Jason D. and Liu, X Shirley and Liu, X Shirley},
title = {{Systematic evaluation of factors influencing ChIP-seq fidelity.}},
journal = {Nature Methods},
year = {2012},
month = apr
}
@article{Silberstein:2004ex,
author = {Silberstein, Claudia and Bouley, Richard and Huang, Yan and Fang, Pingke and Pastor-Soler, Nuria and Brown, Dennis and Van Hoek, Alfred N},
title = {{Membrane organization and function of M1 and M23 isoforms of aquaporin-4 in epithelial cells.}},
journal = {American Journal of Physiology-Renal Physiology},
year = {2004},
volume = {287},
number = {3},
pages = {F501--11},
month = sep
}
@article{Pettorelli:2007hj,
journal = {Journal of Animal Ecology},
year = {2007},
volume = {76},
number = {5},
month = sep
}
@article{Jorgensen:2008eq,
author = {J{\o}rgensen, Sven and Afanasyev, Sergey and Krasnov, Aleksei},
title = {{Gene expression analyses in Atlantic salmon challenged with infectious salmon anemia virus reveal differences between individuals with early, intermediate and late mortality}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {179}
}
@article{Tellam:2009ey,
author = {Tellam, Ross L and Lemay, Danielle G and van Tassell, Curtis P and Lewin, Harris A and Worley, Kim C and Elsik, Christine G},
title = {{Unlocking the bovine genome}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {193}
}
@article{Cheng:2009if,
author = {Cheng, Chao and Bhardwaj, Nitin and Gerstein, Mark},
title = {{The relationship between the evolution of microRNA targets and the length of their UTRs}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {431}
}
@article{Anonymous:xdFqWhWb,
title = {{hyphybook2007}},
year = {2007},
pages = {1--81},
month = apr
}
@article{EnriquezVara:2012hi,
author = {Enr{\'\i}quez-Vara, Jhony N and Enr{\'\i}quez-Vara, Jhony N and C{\'o}rdoba-Aguilar, Alex and C{\'o}rdoba-Aguilar, Alex and Guzm{\'a}n-Franco, Ariel W and Guzm{\'a}n-Franco, Ariel W and Alatorre-Rosas, Raquel and Alatorre-Rosas, Raquel and Contreras-Gardu{\~n}o, Jorge and Contreras-Gardu{\~n}o, Jorge},
title = {{Is Survival After Pathogen Exposure Explained by Host's Immune Strength? A Test with Two Species of White Grubs (Coleoptera: Scarabaeidae) Exposed to Fungal Infection}},
journal = {Environmental Entomology},
year = {2012},
volume = {41},
number = {4},
pages = {959--965},
month = aug
}
@article{Zhou:2012bj,
author = {Zhou, Xiaofan and Zhou, Xiaofan and Slone, Jesse D and Slone, Jesse D and Rokas, Antonis and Berger, Shelley L and Berger, Shelley L and Liebig, J{\"u}rgen and Liebig, J{\"u}rgen and Ray, Anandasankar and Ray, Anandasankar and Reinberg, Danny and Reinberg, Danny and Zwiebel, Laurence J and Zwiebel, Laurence J},
title = {{Phylogenetic and Transcriptomic Analysis of Chemosensory Receptors in a Pair of Divergent Ant Species Reveals Sex-Specific Signatures of Odor Coding}},
journal = {PLOS Genetics},
year = {2012},
volume = {8},
number = {8},
pages = {e1002930},
month = aug
}
@article{Weaver:2006by,
author = {Weaver, I C G},
title = {{Maternal care effects on the hippocampal transcriptome and anxiety-mediated behaviors in the offspring that are reversible in adulthood}},
journal = {Proceedings of the National Academy of Sciences},
year = {2006},
volume = {103},
number = {9},
pages = {3480--3485},
month = feb
}
@article{Scantlebury:2003jg,
author = {Scantlebury, Michael and Shanas, Uri and Kupshtein, Hagai and Afik, Daniel and Haim, Abraham},
title = {{Non-shivering thermogenesis in common spiny mice Acomys cahirinus from adjacent habitats: response to seasonal acclimatization and salinity acclimation}},
journal = {Journal of Thermal Biology},
year = {2003},
volume = {28},
number = {4},
pages = {287--293},
month = may
}
@article{KosakovskyPond:2009bl,
author = {Kosakovsky Pond, Sergei L and Posada, David and Stawiski, Eric and Chappey, Colombe and Poon, Art F Y and Hughes, Gareth and Fearnhill, Esther and Gravenor, Mike B and Leigh Brown, andrew J and Frost, Simon D W},
title = {{An Evolutionary Model-Based Algorithm for Accurate Phylogenetic Breakpoint Mapping and Subtype Prediction in HIV-1}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {11},
pages = {e1000581},
month = nov
}
@article{Peplies:2008fs,
author = {Peplies, J{\"o}rg and Kottmann, Renzo and Ludwig, Wolfgang and Gl{\"o}ckner, Frank Oliver},
title = {{A standard operating procedure for phylogenetic inference (SOPPI) using (rRNA) marker genes}},
journal = {Systematic and applied microbiology},
year = {2008},
volume = {31},
number = {4},
pages = {251--257},
month = sep
}
@article{Rokas:2009bh,
author = {Rokas, Antonis and Abbot, Patrick},
title = {{Harnessing genomics for evolutionary insights}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {4},
pages = {192--200},
month = apr
}
@article{Babik:2008fq,
author = {Babik, W and Pabijan, M and Radwan, J},
title = {{Contrasting patterns of variation in MHC loci in the Alpine newt}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {10},
pages = {2339--2355},
month = apr
}
@article{Doyle:2013bo,
author = {Doyle, Jacqueline M and Siegmund, Gregor and Ruhl, Joseph D and Eo, Soo Hyung and Hale, Matthew C and Marra, Nicholas J and Waser, Peter M and Dewoody, J andrew and Civetta, A},
title = {{Microsatellite analyses across three diverse vertebrate transcriptomes ( Acipenser fulvescens, Ambystoma tigrinum, and \textit{Dipodomys} spectabilis)}},
journal = {Genome / National Research Council Canada = G{\'e}nome / Conseil national de recherches Canada},
year = {2013},
volume = {56},
number = {7},
pages = {407--414},
month = jul
}
@article{Hoogewijs:2012fk,
author = {Hoogewijs, D and Ebner, B and Germani, F and Hoffmann, F G and Fabrizius, A and Moens, L and Burmester, T and Dewilde, S and Storz, J F and Vinogradov, S N and Hankeln, T},
title = {{androglobin: A Chimeric Globin in Metazoans That Is Preferentially Expressed in Mammalian Testes}},
journal = {Molecular Biology and Evolution},
year = {2012},
volume = {29},
number = {4},
pages = {1105--1114},
month = mar
}
@article{Ohnishi:2009bf,
author = {Ohnishi, N and Uno, R and Ishibashi, Y and Tamate, H B and Oi, T},
title = {{The influence of climatic oscillations during the Quaternary Era on the genetic structure of Asian black bears in Japan}},
journal = {Heredity},
year = {2009},
volume = {102},
number = {6},
pages = {579--589},
month = mar
}
@article{Whiteford:2009kd,
author = {Whiteford, N and Skelly, T and Curtis, C and Ritchie, M E and Lohr, A and Zaranek, A W and Abnizova, I and Brown, C},
title = {{Swift: primary data analysis for the Illumina Solexa sequencing platform}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {17},
pages = {2194--2199},
month = aug
}
@article{MARX:1963vo,
author = {MARX, G L and MARX, G L and CARTER, M K and CARTER, M K},
title = {{Histochemical and manometric studies of cholinesterases in mammalian kidney tissue.}},
journal = {American Journal of Physiology},
year = {1963},
volume = {204},
pages = {124--128},
month = jan
}
@article{Degnan:2012kp,
author = {Degnan, Patrick H and Degnan, Patrick H and Pusey, Anne E and Pusey, Anne E and Lonsdorf, Elizabeth V and Lonsdorf, Elizabeth V and Goodall, Jane and Goodall, Jane and Wroblewski, Emily E and Wroblewski, Emily E and Wilson, Michael L and Wilson, Michael L and Rudicell, Rebecca S and Rudicell, Rebecca S and Hahn, Beatrice H and Hahn, Beatrice H and Ochman, Howard and Ochman, Howard},
title = {{Factors associated with the diversification of the gut microbial communities within chimpanzees from Gombe National Park.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {32},
pages = {13034--13039},
month = aug
}
@article{RANDALL:1985vx,
author = {RANDALL, JA},
title = {{ROLE OF URINE IN COORDINATING REPRODUCTION IN A DESERT RODENT (DIPODOMYS-MERRIAMI)}},
journal = {Physiology {\&} Behavior},
year = {1985},
volume = {34},
number = {2},
pages = {199--203}
}
@article{Pompanon:2005kx,
author = {Pompanon, Fran{\c c}ois and Bonin, Aurelie and Bellemain, Eva and Taberlet, Pierre},
title = {{Genotyping errors: causes, consequences and solutions}},
journal = {Nature Reviews Genetics},
year = {2005},
volume = {6},
number = {11},
pages = {847--846},
month = sep
}
@article{Pettersson:2009cy,
author = {Pettersson, Erik and Lundeberg, Joakim and Ahmadian, Afshin},
title = {{Generations of sequencing technologies}},
journal = {Genomics},
year = {2009},
volume = {93},
number = {2},
pages = {105--111},
month = feb
}
@article{Gaut:1994tf,
author = {GAUT, BS and WEIR, BS},
title = {{Detecting substitution-rate heterogeneity among regions of a nucleotide sequence}},
journal = {Molecular Biology and Evolution},
year = {1994},
volume = {11},
number = {4},
pages = {620--629},
month = jul
}
@article{Orrock:2008ek,
author = {Orrock, John L and Allan, Brian F},
title = {{Sin Nombre Virus Infection in Deer Mice, Channel Islands, California}},
journal = {Emerging Infectious Diseases},
year = {2008},
volume = {14},
number = {12},
pages = {1965--1966},
month = dec
}
@article{Anonymous:2012je,
title = {{Adaptive Evolution in Ecological Communities}},
year = {2012},
pages = {1--6},
month = may
}
@article{Alexander:2005vr,
author = {Alexander, LF and RIDDLE, BR},
title = {{Phylogenetics of the new world rodent family heteromyidae}},
journal = {Journal of Mammalogy},
year = {2005},
volume = {86},
number = {2},
pages = {366--379}
}
@article{Cao:2013ci,
author = {Cao, Hongzhi and Cao, Hongzhi and Wu, Jinghua and Wang, Yu and Wang, Yu and Jiang, Hui and Zhang, Tao and Liu, Xiao and Xu, Yinyin and Xu, Yinyin and Liang, Dequan and Liang, Dequan and Gao, Peng and Gao, Peng and Sun, Yepeng and Sun, Yepeng and Gifford, Benjamin and Gifford, Benjamin and D{\textquoteright}Ascenzo, Mark and D{\textquoteright}Ascenzo, Mark and Liu, Xiaomin and Liu, Xiaomin and Tellier, Laurent C A M and Tellier, Laurent C A M and Yang, Fang and Yang, Fang and Tong, Xin and Tong, Xin and Chen, Dan and Chen, Dan and Zheng, Jing and Zheng, Jing and Li, Weiyang and Li, Weiyang and Richmond, Todd and Richmond, Todd and Xu, Xun and Xu, Xun and Wang, Jun and Li, Yingrui},
title = {{An Integrated Tool to Study MHC Region: Accurate SNV Detection and HLA Genes Typing in Human MHC Region Using Targeted High-Throughput Sequencing}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {7},
pages = {e69388},
month = jul
}
@article{Emlen:1994tm,
author = {Emlen, ST},
title = {{BENEFITS, CONSTRAINTS AND THE EVOLUTION OF THE FAMILY}},
journal = {Trends In Ecology {\&} Evolution},
year = {1994},
volume = {9},
number = {8},
pages = {282--285}
}
@article{Simao:2002vy,
author = {Sim{\~a}o, J and Todd, P},
title = {{Modeling mate choice in monogamous mating systems with courtship}},
journal = {Adaptive Behavior},
year = {2002}
}
@article{Handelsman:2004dl,
author = {Handelsman, Jo},
title = {{Metagenomics: application of genomics to uncultured microorganisms.}},
journal = {Microbiology and molecular biology reviews : MMBR},
year = {2004},
volume = {68},
number = {4},
pages = {669--685},
month = dec
}
@article{Ning:2001hl,
author = {Ning, Z},
title = {{SSAHA: A Fast Search Method for Large DNA Databases}},
journal = {Genome Research},
year = {2001},
volume = {11},
number = {10},
pages = {1725--1729},
month = oct
}
@article{Drewe:2013id,
author = {Drewe, P and Drewe, P and Stegle, O and Stegle, O and Hartmann, L and Hartmann, L and Kahles, A and Kahles, A and Bohnert, R and Bohnert, R and Wachter, A and Wachter, A and Borgwardt, K and Borgwardt, K and Ratsch, G and Ratsch, G},
title = {{Accurate detection of differential RNA processing}},
journal = {Nucleic Acids Research},
year = {2013},
month = apr
}
@article{Privman:2011iq,
author = {Privman, E and Penn, O and Penn, O and Pupko, T},
title = {{Improving the Performance of Positive Selection Inference by Filtering Unreliable Alignment Regions}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {29},
number = {1},
pages = {1--5},
month = dec
}
@article{Champlot:2010ep,
author = {Champlot, Sophie and Berthelot, Camille and Pruvost, M{\'e}lanie and Bennett, E andrew and Grange, Thierry and Geigl, Eva-Maria},
title = {{An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {9},
pages = {e13042},
month = sep
}
@article{Anonymous:id,
author = {Squires, Zoe E and Wong, Bob B M and Norman, Mark D and Stuart-Fox, Devi},
title = {{Multiple Fitness Benefits of Polyandry in a Cephalopod}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e37074},
month = may
}
@article{Kao:2011bx,
author = {Kao, Wei-Chun and Kao, Wei-Chun and Chan, andrew H and Chan, andrew H and Song, Yun S and Song, Yun S},
title = {{ECHO: a reference-free short-read error correction algorithm.}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {7},
pages = {1181--1192},
month = jul
}
@article{Hirschhorn:2009br,
author = {Hirschhorn, Joel N and Lettre, Guillaume},
title = {{Progress in Genome-Wide Association Studies of Human Height}},
journal = {Hormone Research},
year = {2009},
volume = {71},
number = {2},
pages = {5--13}
}
@article{Grossman:2010el,
author = {Grossman, S R and Shylakhter, I and Karlsson, E K and Byrne, E H and Morales, S and Frieden, G and Hostetter, E and Angelino, E and Garber, M and Zuk, O and Lander, E S and Schaffner, S F and Sabeti, P C},
title = {{A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection}},
journal = {Science (New York, NY)},
year = {2010},
volume = {327},
number = {5967},
pages = {883--886},
month = feb
}
@article{Orsini:2013bb,
author = {Orsini, Luisa and Vanoverbeke, Joost and Swillen, Ine and Mergeay, Joachim and De Meester, Luc},
title = {{Drivers of population genetic differentiation in the wild: isolation by dispersal limitation, isolation by adaptation and isolation by colonization}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = oct
}
@article{Thalmann:2013gh,
author = {Thalmann, O and Shapiro, B and Cui, P and Schuenemann, V J and Sawyer, S K and Greenfield, D L and Germonpre, M B and Sablin, M V and Lopez-Giraldez, F and Domingo-Roura, X and Napierala, H and Uerpmann, H P and Loponte, D M and Acosta, A A and Giemsch, L and Schmitz, R W and Worthington, B and Buikstra, J E and Druzhkova, A and Graphodatsky, A S and Ovodov, N D and Wahlberg, N and Freedman, A H and Schweizer, R M and Koepfli, K P and Leonard, J A and Meyer, M and Krause, J and Paabo, S and Green, R E and Wayne, R K},
title = {{Complete Mitochondrial Genomes of Ancient Canids Suggest a European Origin of Domestic Dogs}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6160},
pages = {871--874},
month = nov
}
@article{Bossdorf:2011cs,
author = {Bossdorf, Oliver and Bossdorf, Oliver and Zhang, Yuanye and Zhang, Yuanye},
title = {{A truly ecological epigenetics study}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {8},
pages = {1572--1574}
}
@article{Pan:2013ba,
author = {Pan, Guoqing and Pan, Guoqing and Xu, Jinshan and Xu, Jinshan and Li, Tian and Li, Tian and Xia, Qingyou and Xia, Qingyou and Liu, Shao-Lun and Liu, Shao-Lun and Zhang, Guojie and Li, Songgang and Li, Songgang and Li, Chunfeng and Li, Chunfeng and Liu, Handeng and Liu, Handeng and Yang, Liu and Yang, Liu and Liu, Tie and Liu, Tie and Zhang, Xi and Zhang, Xi and Wu, Zhengli and Wu, Zhengli and Fan, Wei and Fan, Wei and Dang, Xiaoqun and Dang, Xiaoqun and Xiang, Heng and Xiang, Heng and Tao, Meilin and Tao, Meilin and Li, Yanhong and Li, Yanhong and Hu, Junhua and Hu, Junhua and Li, Zhi and Li, Zhi and Lin, Lipeng and Lin, Lipeng and Luo, Jie and Luo, Jie and Geng, Lina and Geng, Lina and Wang, LinLing and Wang, LinLing and Long, Mengxian and Long, Mengxian and Wan, Yongji and Wan, Yongji and He, Ningjia and He, Ningjia and Zhang, Ze and Zhang, Ze and Lu, Cheng and Lu, Cheng and Keeling, Patrick J and Keeling, Patrick J and Wang, Jun and Xiang, Zhonghuai and Xiang, Zhonghuai and Zhou, Zeyang and Zhou, Zeyang},
title = {{Comparative genomics of parasitic silkworm microsporidia reveal an association between genome expansion and host adaptation}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {186}
}
@article{Arnqvist:2004hg,
author = {Arnqvist, G},
title = {{Mating rate and fitness in female bean weevils}},
journal = {Behavioral Ecology},
year = {2004},
volume = {16},
number = {1},
pages = {123--127},
month = jul
}
@article{Rosenblum:2010ev,
author = {Rosenblum, Erica Bree and Voyles, Jamie and Poorten, Thomas J and Stajich, Jason E},
title = {{The Deadly Chytrid Fungus: A Story of an Emerging Pathogen}},
journal = {PLOS pathogens},
year = {2010},
volume = {6},
number = {1},
pages = {e1000550},
month = jan
}
@article{Stark:2007df,
author = {Stark, Alexander and Lin, Michael F and Kheradpour, Pouya and Pedersen, Jakob S and Parts, Leopold and Carlson, Joseph W and Crosby, Madeline A and Rasmussen, Matthew D and Roy, Sushmita and Roy, Sushmita and Deoras, Ameya N and Deoras, Ameya N and Ruby, J Graham and Brennecke, Julius and Brennecke, Julius and Hodges, Emily and Hinrichs, Angie S and Caspi, Anat and Park, Seung-Won and Park, Seung-Won and Han, Mira V and Maeder, Morgan L and Maeder, Morgan L and Polansky, Benjamin J and Polansky, Benjamin J and Robson, Bryanne E and Robson, Bryanne E and Aerts, Stein and Aerts, Stein and van Helden, Jacques and van Helden, Jacques and Hassan, Bassem and Hassan, Bassem and Gilbert, Donald G and Gilbert, Donald G and Eastman, Deborah A and Eastman, Deborah A and Rice, Michael and Rice, Michael and Weir, Michael and Weir, Michael and Hahn, Matthew W and Park, Yongkyu and Park, Yongkyu and Dewey, Colin N and Pachter, Lior and Kent, W James and Kent, W James and Haussler, David and Lai, Eric C and Lai, Eric C and Bartel, David P and Bartel, David P and Hannon, Gregory J and Kaufman, Thomas C and Eisen, Michael B and Clark, andrew G and Smith, Douglas and Smith, Douglas and Celniker, Susan E and Gelbart, William M and Kellis, Manolis},
title = {{Discovery of functional elements in 12 \textit{Drosophila} genomes using evolutionary signatures}},
journal = {Nature},
year = {2007},
volume = {450},
number = {7167},
pages = {219--232}
}
@article{Liu:2008jv,
author = {Liu, Xiaoping and Serova, Lidia and Kvet ansk, Richard and Sabban, Esther L},
title = {{Identifying the Stress Transcriptome in the Adrenal Medulla following Acute and Repeated Immobilization}},
journal = {Annals of the New York Academy of Sciences},
year = {2008},
volume = {1148},
number = {1},
pages = {1--28},
month = dec
}
@article{Morin:2008gb,
author = {Morin, Phillip A and LeDuc, Richard G and Archer, Frederick I and Martien, Karen K and Huebinger, Ryan and Bickham, John W and Taylor, Barbara L},
title = {{Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {2},
pages = {498--504},
month = jan
}
@article{Chao:1993th,
author = {Chao, A},
title = {{Stopping rules and estimation for recapture debugging with unequal failure rates}},
journal = {Biometrika},
year = {1993},
volume = {80},
number = {1},
pages = {193--201}
}
@article{Baker:2007cu,
author = {Baker, Dean A and Meadows, Lisa A and Wang, Jing and Dow, Julian At and Russell, Steven},
title = {{Variable sexually dimorphic gene expression in laboratory strains of \textit{Drosophila} \textit{melanogaster}}},
journal = {BMC Genomics},
year = {2007},
volume = {8},
number = {1},
pages = {454}
}
@article{Lacey:2005tm,
author = {Lacey, EA and Sherman, PW},
title = {{Redefining eusociality: concepts, goals and levels of analysis}},
journal = {Annales Zoologici Fennici},
year = {2005},
volume = {42},
number = {6},
pages = {573--577}
}
@article{Martin:2010jl,
author = {Martin, Cassandra M and Wagner, William E},
title = {{Female Field Crickets Incur Increased Parasitism Risk When Near Preferred Song}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9592},
month = mar
}
@article{Ward:1998vc,
author = {Ward, PI},
title = {{A possible explanation for cryptic female choice in the yellow dung fly, Scathophaga stercoraria (L.)}},
journal = {Ethology},
year = {1998},
volume = {104},
number = {2},
pages = {97--110}
}
@article{Frank:2011cq,
author = {Frank, S. A.},
title = {{Natural selection. I. Variable environments and uncertain returns on investment*}},
journal = {Journal of Evolutionary Biology},
year = {2011},
pages = {no--no},
month = sep
}
@article{CREEL:1994vm,
author = {CREEL, SR and WASER, PM},
title = {{INCLUSIVE FITNESS AND REPRODUCTIVE STRATEGIES IN DWARF MONGOOSES}},
journal = {Behavioral Ecology},
year = {1994},
volume = {5},
number = {3},
pages = {339--348}
}
@article{Xie:2013wu,
author = {Xie, Yinlong and Wu, Gengxiong and Tang, Jingbo and Luo, Ruibang and Patterson, Jordan and Liu, Shanlin and Huang, Weihua and He, Guangzhu and Gu, Shengchang and Li, Shengkang and Zhou, Xin and Lam, Tak-Wah and Li, Yingrui and Xu, Xun and Wong, Gane Ka-Shu and Wang, Jun},
title = {{SOAPdenovo-Trans: \textit{de novo} transcriptome assembly with short RNA-Seq reads.}},
journal = {Bioinformatics (Oxford, England)},
year = {2014},
volume = {30},
number = {12},
pages = {1660--1666},
month = jun
}
@article{AllenArave:2008hb,
author = {Allen-Arave, Wesley and Gurven, Michael and Hill, Kim},
title = {{Reciprocal altruism, rather than kin selection, maintains nepotistic food transfers on an Ache reservation}},
journal = {Evolution and Human Behavior},
year = {2008},
volume = {29},
number = {5},
pages = {305--318},
month = sep
}
@article{OFallon:2010ca,
author = {O'Fallon, B D and Seger, J and Adler, F R},
title = {{A Continuous-State Coalescent and the Impact of Weak Selection on the Structure of Gene Genealogies}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {5},
pages = {1162--1172},
month = apr
}
@article{Stegemann:2009hv,
author = {Stegemann, S and Bock, R},
title = {{Exchange of Genetic Material Between Cells in Plant Tissue Grafts}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5927},
pages = {649--651},
month = apr
}
@article{Elizabeth:2010vv,
author = {Elizabeth},
title = {{ChurakovNEW_867}},
year = {2010},
pages = {1--35},
month = jan
}
@article{Bijleveld:2009ko,
author = {Bijleveld, A I and Mullers, R H E},
title = {{Reproductive effort in biparental care: an experimental study in long-lived Cape gannets}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {4},
pages = {736--744},
month = jul
}
@article{Neff:2005iz,
author = {Neff, Bryan D and Pitcher, Trevor E},
title = {{Genetic quality and sexual selection: an integrated framework for good genes and compatible genes}},
journal = {Molecular Ecology},
year = {2004},
volume = {14},
number = {1},
pages = {19--38},
month = nov
}
@article{Guevarafiore:2009hi,
author = {Guevara-Fiore, P and Skinner, A and Watt, P J},
title = {{Do male guppies distinguish virgin females from recently mated ones?}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {425--431},
month = feb
}
@article{KUHNER:1995vw,
author = {KUHNER, MK and KUHNER, MK and YAMATO, J and YAMATO, J and FELSENSTEIN, J},
title = {{ESTIMATING EFFECTIVE POPULATION-SIZE AND MUTATION-RATE FROM SEQUENCE DATA USING METROPOLIS-HASTINGS SAMPLING}},
journal = {Genetics},
year = {1995},
volume = {140},
number = {4},
pages = {1421--1430}
}
@article{Lister:2014jv,
author = {Lister, Adrian M},
title = {{The role of behaviour in adaptive morphological evolution of African proboscideans}},
journal = {Nature},
year = {2014},
volume = {500},
number = {7462},
pages = {331--334},
month = apr
}
@article{andres:2006en,
author = {ANDR{\'e}S, J A},
title = {{Molecular Evolution of Seminal Proteins in Field Crickets}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {23},
number = {8},
pages = {1574--1584},
month = jun
}
@article{Sugg:1996td,
author = {Sugg, DW and Chesser, RK and Dobson, FS and Dobson, FS and Hoogland, JL and Hoogland, JL},
title = {{Population genetics meets behavioral ecology}},
journal = {Trends In Ecology {\&} Evolution},
year = {1996},
volume = {11},
number = {8},
pages = {338--342}
}
@article{TILLIER:1988we,
author = {TILLIER, ER and Golding, GB and Golding, GB},
title = {{A SAMPLING THEORY OF SELECTIVELY NEUTRAL ALLELES IN A SUBDIVIDED POPULATION}},
journal = {Genetics},
year = {1988},
volume = {119},
number = {3},
pages = {721--729}
}
@article{McEachern:2009hm,
author = {McEachern, M B and McEachern, M B and McElreath, Richard L and McElreath, Richard L and van Vuren, Dirk H and Eadie, John M},
title = {{Another genetically promiscuous 'polygynous' mammal: mating system variation in \emph{\textit{Neotoma fuscipes}}}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {449--455}
}
@article{Lesku:2012hy,
author = {Lesku, J A and Lesku, J A and Rattenborg, N C and Rattenborg, N C and Valcu, M and Vyssotski, A L and Vyssotski, A L and Kuhn, S and Kuhn, S and Kuemmeth, F and Kuemmeth, F and Heidrich, W and Heidrich, W and Kempenaers, B},
title = {{Adaptive Sleep Loss in Polygynous Pectoral Sandpipers}},
journal = {Science (New York, NY)},
year = {2012},
month = aug
}
@article{Costello:2009kg,
author = {Costello, Cecily M and Creel, Scott R and Kalinowski, Steven T and Vu, Ninh V and Quigley, Howard B},
title = {{Determinants of male reproductive success in American black bears}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {64},
number = {1},
pages = {125--134},
month = aug
}
@article{Tunez:2009hv,
author = {T{\'u}nez, J I and Guich{\'o}n, M L and Centr{\'o}n, D and Henderson, A P and Callahan, C and Cassini, M H},
title = {{Relatedness and social organization of coypus in the Argentinean pampas}},
journal = {Molecular Ecology},
year = {2008},
month = dec
}
@article{Barton:1998uq,
author = {Barton, NH and Charlesworth, B},
title = {{Why sex and recombination?}},
journal = {Science (New York, NY)},
year = {1998},
volume = {281},
number = {5385},
pages = {1986}
}
@article{Rasmussen:2009bt,
author = {Rasmussen, David A and Noor, Mohamed AF},
title = {{What can you do with 0.1{\texttimes} genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {382}
}
@article{AMANN:1995tw,
author = {AMANN, RI and LUDWIG, W and SCHLEIFER, KH},
title = {{PHYLOGENETIC IDENTIFICATION AND IN-SITU DETECTION OF INDIVIDUAL MICROBIAL-CELLS WITHOUT CULTIVATION}},
journal = {Microbiological Reviews},
year = {1995},
volume = {59},
number = {1},
pages = {143--169}
}
@article{Panova:2011ge,
author = {Panova, Marina and Blakeslee, April M H and Blakeslee, April M H and Miller, A Whitman and Miller, A Whitman and Maekinen, Tuuli and Maekinen, Tuuli and Ruiz, Gregory M and Ruiz, Gregory M and Johannesson, Kerstin and andre, Carl},
title = {{Glacial History of the North Atlantic Marine Snail, Littorina saxatilis, Inferred from Distribution of Mitochondrial DNA Lineages}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {3}
}
@article{Charlesworth:1978ty,
author = {Charlesworth, B},
title = {{SOME MODELS OF EVOLUTION OF ALTRUISTIC BEHAVIOR BETWEEN SIBLINGS}},
journal = {Journal of Theoretical Biology},
year = {1978},
volume = {72},
number = {2},
pages = {297--319}
}
@article{MartinezPastor:2008ua,
author = {Martinez-Pastor, F and Malo, A F and Alaks, G and Alaks, G and Lacy, R C and Lacy, R C},
title = {{Captive breeding strategies affect sperm traits in \textit{Peromyscus} leucopus}},
journal = {Reproduction In Domestic Animals},
year = {2008},
volume = {43},
pages = {211--211}
}
@article{Anisimova:2009kz,
author = {Anisimova, M and Kosiol, C},
title = {{Investigating Protein-Coding Sequence Evolution with Probabilistic Codon Substitution Models}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {2},
pages = {255--271},
month = jan
}
@article{Fredricks:2005um,
author = {Fredricks, DN and Fiedler, TL and Marrazzo, JM},
title = {{Molecular identification of bacteria associated with bacterial vaginosis}},
journal = {New England Journal of Medicine},
year = {2005},
volume = {353},
number = {18},
pages = {1899--1911}
}
@article{Lou:2013hf,
author = {Lou, Dianne I and Hussmann, Jeffrey A and McBee, Ross M and Acevedo, Ashley and andino, Raul and Press, William H and Sawyer, Sara L},
title = {{High-throughput DNA sequencing errors are reduced by orders of magnitude using circle sequencing.}},
journal = {PNAS},
year = {2013},
volume = {110},
number = {49},
pages = {19872--19877},
month = nov
}
@article{Chen:2013da,
author = {Chen, Yen-Chun and Liu, Tsunglin and Yu, Chun-Hui and Chiang, Tzen-Yuh and Hwang, Chi-Chuan},
title = {{Effects of GC Bias in Next-Generation-Sequencing Data on De Novo Genome Assembly}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {4},
pages = {e62856},
month = apr
}
@article{Margam:2011jr,
author = {Margam, Venu M and Margam, Venu M and Coates, Brad S and Bayles, Darrell O and Bayles, Darrell O and Hellmich, Richard L and Hellmich, Richard L and Agunbiade, Tolulope and Agunbiade, Tolulope and Seufferheld, Manfredo J and Seufferheld, Manfredo J and Sun, Weilin and Sun, Weilin and Kroemer, Jeremy A and Kroemer, Jeremy A and Ba, Malick N and Ba, Malick N and Binso-Dabire, Clementine L and Binso-Dabire, Clementine L and Baoua, Ibrahim and Baoua, Ibrahim and Ishiyaku, Mohammad F and Ishiyaku, Mohammad F and Covas, Fernando G and Covas, Fernando G and Srinivasan, Ramasamy and Srinivasan, Ramasamy and Armstrong, Joel and Armstrong, Joel and Murdock, Larry L and Murdock, Larry L and Pittendrigh, Barry R and Pittendrigh, Barry R},
title = {{Transcriptome Sequencing, and Rapid Development and Application of SNP Markers for the Legume Pod Borer Maruca vitrata (Lepidoptera: Crambidae).}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {7},
pages = {e21388}
}
@article{Turner:2011bi,
author = {Turner, andrew K and Turner, andrew K and Begon, Mike and Begon, Mike and Jackson, Joseph A and Bradley, Janette E and Paterson, Steve},
title = {{Genetic Diversity in Cytokines Associated with Immune Variation and Resistance to Multiple Pathogens in a Natural Rodent Population}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {10},
month = oct
}
@inproceedings{Ishibashi:2009iv,
author = {Ishibashi, Kenichi and Hara, Shigeki and Hara, Shigeki and Kondo, Shintaro and Kondo, Shintaro},
title = {{Aquaporin water channels in mammals}},
booktitle = {Clinical and Experimental Nephrology},
year = {2008},
pages = {107--117},
organization = {Meiji Pharmaceut Univ, Dept Med Physiol, Tokyo 2048588, Japan},
month = dec
}
@incollection{Trivers:tb,
author = {Trivers, B},
title = {{Parental investment and sexual selection}},
booktitle = {Sexual Selection and the Descent of Man 1871{\textendash}1971},
pages = {136--179},
publisher = {Aldine},
address = {Chicago}
}
@article{Gillespie:2010dn,
author = {Gillespie, Duncan O S and Lahdenpera, Mirkka and Russell, andrew F and Lummaa, Virpi},
title = {{Pair-Bonding Modifies the Age-Specific Intensities of Natural Selection on Human Female Fecundity}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {2},
pages = {159--169},
month = aug
}
@article{Hauber:2005wj,
author = {Hauber, ME and Lacey, EA},
title = {{Bateman's principle in cooperatively breeding vertebrates: The effects of non-breeding alloparents on variability in female and male reproductive success}},
journal = {Integrative and Comparative Biology},
year = {2005},
volume = {45},
number = {5},
pages = {903--914}
}
@article{Parker:2011hp,
author = {Parker, C C and Cheng, R and Sokoloff, G and Palmer, A A},
title = {{Genome-wide association for methamphetamine sensitivity in an advanced intercross mouse line}},
journal = {Genes, Brain and Behavior},
year = {2011},
pages = {no--no},
month = nov
}
@article{Hambuch:2002ty,
author = {Hambuch, TM and Lacey, EA},
title = {{Enhanced selection for MHC diversity in social tuco-tucos}},
journal = {Evolution},
year = {2002},
volume = {56},
number = {4},
pages = {841--845}
}
@article{Dickson:2008ek,
author = {Dickson, B J},
title = {{Wired for Sex: The Neurobiology of \textit{Drosophila} Mating Decisions}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5903},
pages = {904--909},
month = nov
}
@article{EDWARDS:1989vz,
author = {EDWARDS, U and EDWARDS, U and ROGALL, T and ROGALL, T and BLOCKER, H and BLOCKER, H and EMDE, M and EMDE, M and BOTTGER, EC and BOTTGER, EC},
title = {{ISOLATION AND DIRECT COMPLETE NUCLEOTIDE DETERMINATION OF ENTIRE GENES - CHARACTERIZATION OF A GENE CODING FOR 16S-RIBOSOMAL RNA}},
journal = {Nucleic Acids Research},
year = {1989},
volume = {17},
number = {19},
pages = {7843--7853}
}
@article{Birkhead:2000us,
author = {Birkhead, TR},
title = {{Defining and demonstrating postcopulatory female choice - Again}},
journal = {Evolution},
year = {2000},
volume = {54},
number = {3},
pages = {1057--1060}
}
@article{Dechmann:2010dq,
author = {Dechmann, Dina K N and Kranstauber, Bart and Gibbs, David and Wikelski, Martin},
title = {{Group Hunting{\textemdash}A Reason for Sociality in Molossid Bats?}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {2},
pages = {e9012},
month = feb
}
@article{Anonymous:gpl65BkH,
title = {{R Data Import Export}},
year = {2011},
pages = {1--39},
month = apr
}
@article{Man:2010ix,
author = {Man, Rongzhou and Rice, James A},
title = {{Forest Ecology and Management}},
journal = {Forest Ecology and Management},
year = {2010},
volume = {260},
number = {10},
pages = {1853--1860},
month = oct
}
@article{Simpson:2013tc,
author = {Simpson, Jared T},
title = {{Exploring Genome Characteristics and Sequence Quality Without a Reference}},
journal = {arXiv.org},
year = {2013},
eprint = {1307.8026v1},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = jul
}
@article{Mesoudi:2007kw,
author = {Mesoudi, A and Laland, K N},
title = {{Culturally transmitted paternity beliefs and the evolution of human mating behaviour}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1615},
pages = {1273--1278},
month = may
}
@article{Du:2010ix,
author = {Du, X and Chen, Z and Li, W and Tan, Y and Lu, J and Zhu, X and Zhao, T and Dong, G and Zeng, L},
title = {{Development of Novel Microsatellite DNA Markers by Cross-Amplification and Analysis of Genetic Variation in Gerbils}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {6},
pages = {710--716},
month = oct
}
@article{Pitnick:1996tn,
author = {Pitnick, S},
title = {{Investment in testes and the cost of making long sperm in \textit{Drosophila}}},
journal = {The American Naturalist},
year = {1996},
volume = {148},
number = {1},
pages = {57--80}
}
@article{Anonymous:-KKN-QS4,
title = {{MacManes 2004 Income Tax}},
year = {2005},
pages = {10},
month = aug
}
@article{Reeder:2004vd,
author = {Reeder, SA and Bradley, RD},
title = {{Molecular systematics of neotomine-peromyscine rodents based on the dentin matrix protein 1 gene}},
journal = {Journal of Mammalogy},
year = {2004},
volume = {85},
number = {6},
pages = {1194--1200}
}
@article{Thornton:2010iq,
author = {Thornton, Simon N},
title = {{Physiology {\&} Behavior}},
journal = {Physiology {\&} Behavior},
year = {2010},
volume = {100},
number = {1},
pages = {15--21},
month = apr
}
@article{Gribouval:2005jm,
author = {Gribouval, Olivier and Gonzales, Marie and Neuhaus, Thomas and Aziza, Jacqueline and Bieth, Eric and Laurent, Nicole and Bouton, Jean Marie and Feuillet, Fran{\c c}ois and Makni, Saloua and Amar, Hatem Ben and Laube, Guido and Delezoide, Anne-Lise and Bouvier, Raymonde and Dijoud, Fr{\'e}d{\'e}rique and Ollagnon-Roman, Elisabeth and Roume, Joelle and Joubert, Madeleine and Antignac, Corinne and Gubler, Marie Claire},
title = {{Mutations in genes in the renin-angiotensin system are associated with autosomal recessive renal tubular dysgenesis}},
journal = {Nature Genetics},
year = {2005},
volume = {37},
number = {9},
pages = {964--968},
month = aug
}
@article{Westneat:2003fa,
author = {Westneat, David F and Stewart, Ian R K},
title = {{E XTRA-P AIRP ATERNITY INB IRDS: Causes, Correlates, and Conflict}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2003},
volume = {34},
number = {1},
pages = {365--396},
month = nov
}
@article{Myer:2005im,
author = {Myer, Landon and Myer, Landon and Kuhn, Louise and Kuhn, Louise and Stein, Zena A and Stein, Zena A and Wright, Thomas C and Wright, Thomas C and Denny, Lynette and Denny, Lynette},
title = {{Intravaginal practices, bacterial vaginosis, and women's susceptibility to HIV infection: epidemiological evidence and biological mechanisms.}},
journal = {The Lancet infectious diseases},
year = {2005},
volume = {5},
number = {12},
pages = {786--794},
month = dec
}
@article{Griffen:2011cx,
author = {Griffen, Ann L and Beall, Clifford J and Firestone, Noah D and Gross, Erin L and DiFranco, James M and Hardman, Jori H and Vriesendorp, Bastienne and Faust, Russell A and Janies, Daniel A and Leys, Eugene J},
title = {{CORE: A Phylogenetically-Curated 16S rDNA Database of the Core Oral Microbiome}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {4},
pages = {e19051},
month = apr
}
@article{Benoit:2010gu,
author = {Benoit, Joshua B and Lopez-Martinez, Giancarlo and Phillips, Zachary P and Patrick, Kevin R and Denlinger, David L},
title = {{Heat shock proteins contribute to mosquito dehydration tolerance}},
journal = {Journal of Insect Physiology},
year = {2010},
volume = {56},
number = {2},
pages = {151--156},
month = feb
}
@article{Hoelzel:1991vg,
author = {Hoelzel, AR and Hoelzel, AR and Ford, JKB and Ford, JKB and DOVER, GA and DOVER, GA},
title = {{A paternity test case for the killer whale (Orcinus orca) by DNA fingerprinting}},
journal = {Marine Mammal Science},
year = {1991},
volume = {7},
number = {1},
pages = {35--43}
}
@article{Anonymous:rbak1YX2,
title = {{Osmotic Stress-Induced Gene Expression in}},
year = {1999},
pages = {1--13},
month = jul
}
@article{Mes:2007da,
author = {Mes, Ted H M and Putten, Jos P M},
title = {{Positively Selected Codons in Immune-Exposed Loops of the Vaccine Candidate OMP-P1 of Haemophilus influenzae}},
journal = {Journal of Molecular Evolution},
year = {2007},
volume = {64},
number = {4},
pages = {411--422},
month = mar
}
@article{Chavez:2013bv,
author = {Chavez, andreas S and Maher, Sean P and Arbogast, Brian S and Kenagy, G J},
title = {{DIVERSIFICATION AND GENE FLOW IN NASCENT LINEAGES OF ISLAND AND MAINLAND NORTH AMERICAN TREE SQUIRRELS ( TAMIASCIURUS)}},
journal = {Evolution},
year = {2013},
pages = {n/a--n/a},
month = dec
}
@article{Dilernia:2008bha,
author = {Dilernia, Dario Alberto and Jones, Leandro and Rodriguez, Sabrina and Turk, Gabriela and Rubio, andrea E and Pampuro, Sandra and Gomez-Carrillo, Manuel and Bautista, Christian and Deluchi, Gabriel and Benetucci, Jorge and Lasala, Mar{\'\i}a Beatriz and Lourtau, Leonardo and Losso, Marcelo Horacio and Perez, H{\'e}ctor and Cahn, Pedro and Salom{\'o}n, Horacio},
title = {{HLA-Driven Convergence of HIV-1 Viral Subtypes B and F Toward the Adaptation to Immune Responses in Human Populations}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {10},
pages = {e3429},
month = oct
}
@article{Rovito:2010cw,
author = {Rovito, Sean M},
title = {{Lineage divergence and speciation in the Web-toed Salamanders (Plethodontidae: Hydromantes) of the Sierra Nevada, California}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {20},
pages = {4554--4571},
month = sep
}
@article{Bybee:2012gh,
author = {Bybee, Seth M and Yuan, Furong and Ramstetter, Monica D and Llorente-Bousquets, Jorge and Reed, Robert D and Osorio, Daniel and Briscoe, Adriana D},
title = {{UV Photoreceptors and UV-Yellow Wing Pigments in HeliconiusButterflies Allow a Color Signal to Serve both Mimicry and Intraspecific Communication}},
journal = {The American Naturalist},
year = {2012},
volume = {179},
number = {1},
pages = {38--51},
month = jan
}
@article{Hamm:2007ew,
author = {Hamm, David and Mautz, Brian S and Wolfner, Mariana F and Aquadro, Charles F and Swanson, Willie J},
title = {{Evidence of Amino Acid Diversity{\textendash}Enhancing Selection within Humans and among Primates at the Candidate Sperm-Receptor Gene PKDREJ}},
journal = {The American Journal of Human Genetics},
year = {2007},
volume = {81},
number = {1},
pages = {44--52},
month = jul
}
@article{Freedman:2010gu,
author = {Freedman, Barry I and Parekh, Rulan S and Kao, W H Linda},
title = {{Genetic Basis of Nondiabetic End-Stage Renal Disease}},
journal = {Seminars in nephrology},
year = {2010},
volume = {30},
number = {2},
pages = {101--110},
month = mar
}
@article{Hager:2011ht,
author = {Hager, R and Cheverud, J M and Cheverud, J M and Wolf, J B},
title = {{Genotype-dependent responses to levels of sibling competition over maternal resources in mice}},
year = {2011},
pages = {1--6},
month = nov
}
@article{Kaul:2002ek,
author = {Kaul, Rupert and Rowland-Jones, Sarah L and Gillespie, Geraldine and Kimani, Joshua and Dong, Tao and Kiama, Peter and Simonsen, J Neil and Bwayo, Job J and McMichael, andrew J and Plummer, Francis A},
title = {{Gonococcal Cervicitis Is Associated with Reduced Systemic CD8 +T Cell Responses in Human Immunodeficiency Virus Type 1{\textendash}Infected and Exposed, Uninfected Sex Workers}},
journal = {The Journal of infectious diseases},
year = {2002},
volume = {185},
number = {10},
pages = {1525--1529},
month = may
}
@article{Weir:2006jc,
author = {Weir, Bruce S and anderson, Amy D and Hepler, Amanda B},
title = {{Genetic relatedness analysis: modern data and new challenges}},
journal = {Nature Reviews Genetics},
year = {2006},
volume = {7},
number = {10},
pages = {771--780},
month = oct
}
@article{Anonymous:ZYRTHMCD,
title = {{Infect Immun 1997 Bos}},
year = {1997},
pages = {9},
month = may
}
@article{Barker:2013hz,
author = {Barker, F K and Barker, F K and Burns, K J and Burns, K J and Klicka, J and Klicka, J and Lanyon, S M and Lanyon, S M and Lovette, I J and Lovette, I J},
title = {{Going to Extremes: Contrasting Rates of Diversification in a Recent Radiation of New World Passerine Birds}},
journal = {Systematic Biology},
year = {2013},
volume = {62},
number = {2},
pages = {298--320},
month = feb
}
@article{Burns:2005tx,
author = {Burns, CE and Goodwin, BJ and Ostfeld, R S},
title = {{A prescription for longer life? Bot fly parasitism of the white-footed mouse}},
journal = {Ecology},
year = {2005},
volume = {86},
number = {3},
pages = {753--761}
}
@article{Churakov:2010fw,
author = {Churakov, G and Sadasivuni, M K and Rosenbloom, K R and Huchon, D and Brosius, J and Schmitz, J},
title = {{Rodent Evolution: Back to the Root}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {6},
pages = {1315--1326},
month = may
}
@article{Hockham:2004dc,
author = {Hockham, Leon R and Graves, Jefferson A and Ritchie, Michael G},
title = {{Sperm competition and the level of polyandry in a bushcricket with large nuptial gifts}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {57},
number = {2},
pages = {149--154},
month = sep
}
@article{Studer:2008io,
author = {Studer, R A and Penel, S and Duret, L and Robinson-Rechavi, M},
title = {{Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes}},
journal = {Genome Research},
year = {2008},
volume = {18},
number = {9},
pages = {1393--1402},
month = jul
}
@article{Cooper:2008kf,
author = {Cooper, Gregory M and Zerr, Troy and Kidd, Jeffrey M and Eichler, Evan E and Nickerson, Deborah A},
title = {{Systematic assessment of copy number variant detection via genome-wide SNP genotyping}},
journal = {Nature Genetics},
year = {2008},
volume = {40},
number = {10},
pages = {1199--1203},
month = sep
}
@article{Grear:2009cs,
author = {Grear, Daniel A and Perkins, Sarah E and Hudson, Peter J},
title = {{Does elevated testosterone result in increased exposure and transmission of parasites?}},
journal = {Ecology Letters},
year = {2009},
volume = {12},
number = {6},
pages = {528--537},
month = jun
}
@article{Anonymous:2012dc,
author = {TOEWS, DAVID P L and BRELSFORD, ALAN},
title = {{The biogeography of mitochondrial and nuclear discordance in animals}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {16},
pages = {3907--3930},
month = jun
}
@article{Oliver:2009gma,
author = {Oliver, M K and Telfer, S and Piertney, S B},
title = {{Major histocompatibility complex (MHC) heterozygote superiority to natural multi-parasite infections in the water vole (Arvicola terrestris)}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1659},
pages = {1119--1128},
month = mar
}
@article{Neff:2002tc,
author = {Neff, BD and Pitcher, TE and Repka, J and Repka, J},
title = {{A Bayesian model for assessing the frequency of multiple mating in nature}},
journal = {Journal of Heredity},
year = {2002},
volume = {93},
number = {6},
pages = {406--414}
}
@article{Mcgraw:2008kb,
author = {Mcgraw, L A and Clark, A G and Wolfner, M F},
title = {{Post-mating Gene Expression Profiles of Female \textit{Drosophila} \textit{melanogaster} in Response to Time and to Four Male Accessory Gland Proteins}},
journal = {Genetics},
year = {2008},
volume = {179},
number = {3},
pages = {1395--1408},
month = jun
}
@article{Prager:1998vi,
author = {Prager, EM and Orrego, C and Orrego, C and Sage, RD and Sage, RD},
title = {{Genetic variation and phylogeography of central Asian and other house mice, including a major new mitochondrial lineage in Yemen}},
journal = {Genetics},
year = {1998},
volume = {150},
number = {2},
pages = {835--861}
}
@article{Schroderus:2010kg,
author = {Schroderus, Eero and Jokinen, Ilmari and Koivula, Minna and Koskela, Esa and Mappes, Tapio and Mills, Suzanne C and Oksanen, Tuula A and Poikonen, Tanja},
title = {{Intra- and Intersexual Trade-offs between Testosterone and Immune System: Implications for Sexual and Sexually Antagonistic Selection}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {4},
pages = {E90--E97},
month = oct
}
@article{Toft:2010dd,
author = {Toft, Christina and andersson, Siv G E},
title = {{Evolutionary microbial genomics: insights into bacterial host adaptation}},
journal = {Nature Reviews Genetics},
year = {2010},
volume = {11},
number = {7},
pages = {465--475},
month = jun
}
@article{Li:2009ka,
author = {Li, H and Handsaker, B and Wysoker, A and Fennell, T and Ruan, J and Homer, N and Marth, G and Abecasis, G and Durbin, R and 1000 Genome Project Data Processing Subgroup},
title = {{The Sequence Alignment/Map format and SAMtools}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {16},
pages = {2078--2079},
month = aug
}
@article{Turner:2009jk,
author = {Turner, Emily H and Ng, Sarah B and Nickerson, Deborah A and Shendure, Jay},
title = {{Methods for Genomic Partitioning}},
journal = {Annual Review of Genomics and Human Genetics},
year = {2009},
volume = {10},
number = {1},
pages = {263--284},
month = sep
}
@article{Roth:2009gh,
author = {Roth, O and Sadd, B M and Schmid-Hempel, P and Kurtz, J},
title = {{Strain-specific priming of resistance in the red flour beetle, Tribolium castaneum}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1654},
pages = {145--151},
month = jan
}
@article{Seeley:2006km,
author = {Seeley, T D and Tarpy, D R},
title = {{Queen promiscuity lowers disease within honeybee colonies}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1606},
pages = {67--72},
month = jan
}
@article{CluttonBrock:2004uv,
author = {Clutton-Brock, TH and Russell, AF and Sharpe, LL},
title = {{Behavioural tactics of breeders in cooperative meerkats}},
journal = {Animal Behaviour},
year = {2004},
volume = {68},
pages = {1029--1040}
}
@article{Thuman:2005ia,
author = {THUMAN, K and GRIFFITH, S},
title = {{Genetic similarity and the nonrandom distribution of paternity in a genetically highly polyandrous shorebird}},
journal = {Animal Behaviour},
year = {2005},
volume = {69},
number = {4},
pages = {765--770},
month = apr
}
@article{Wlasiuk:2009dj,
author = {Wlasiuk, G and Khan, S and Switzer, W M and NACHMAN, M W},
title = {{A History of Recurrent Positive Selection at the Toll-Like Receptor 5 in Primates}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {4},
pages = {937--949},
month = jan
}
@article{Schweitzer:2009ke,
author = {Schweitzer, M H and Zheng, W and Organ, C L and Avci, R and Suo, Z and Freimark, L M and Lebleu, V S and Duncan, M B and Vander Heiden, M G and Neveu, J M and Lane, W S and Cottrell, J S and Horner, J R and Cantley, L C and Kalluri, R and Asara, J M},
title = {{Biomolecular Characterization and Protein Sequences of the Campanian Hadrosaur B. canadensis}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5927},
pages = {626--631},
month = apr
}
@article{Teixeira:2008vh,
author = {Teixeira, A S},
title = {{The monotony of transferrin and esterase electrophoretic patterns in pirarucu, Arapaima gigas (Schinz, 1822) from Santa Cruz Lake, Tefe River, Amazonas, Brazil}},
journal = {Genetics and Molecular Research},
year = {2008},
volume = {7},
number = {2},
pages = {407--416}
}
@article{MAHER:1997vj,
author = {MAHER, CR},
title = {{Group stability, activity budgets, and movements of pronghorn females}},
journal = {Southwestern Naturalist},
year = {1997},
volume = {42},
number = {1},
pages = {25--32}
}
@article{Carninci:2009kn,
author = {Carninci, Piero},
title = {{Is sequencing enlightenment ending the dark age of the transcriptome?}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {10},
pages = {711--713},
month = oct
}
@article{Anonymous:JO-5J4fj,
title = {{VoleWhitePaper_and_LOS}},
year = {2008},
pages = {1--64},
month = jul
}
@article{Bryant:2009gf,
author = {Bryant, Douglas W and Wong, Weng-Keen and Mockler, Todd C},
title = {{QSRA {\textendash} a quality-value guided \textit{de novo} short read assembler}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {69}
}
@article{Takahata:1990ug,
author = {Takahata, N},
title = {{A simple genealogical structure of strongly balanced allelic lines and trans-species evolution of polymorphism.}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1990},
volume = {87},
number = {7},
pages = {2419--2423},
month = apr
}
@article{anderson:2009bc,
author = {anderson, T M and vonHoldt, B M and Candille, S I and Musiani, M and Greco, C and Stahler, D R and Smith, D W and Padhukasahasram, B and Randi, E and Leonard, J A and Bustamante, C D and Ostrander, E A and Tang, H and Wayne, R K and Barsh, G S},
title = {{Molecular and Evolutionary History of Melanism in North American Gray Wolves}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5919},
pages = {1339--1343},
month = mar
}
@article{Negro:1996tb,
author = {Negro, JJ and Villarroel, M and Tella, JL and Kuhnlein, U and Hiraldo, F and Hiraldo, F and Donazar, JA and Donazar, JA and Bird, DM and Bird, DM},
title = {{DNA fingerprinting reveals a low incidence of extra-pair fertilizations in the lesser kestrel}},
journal = {Animal Behaviour},
year = {1996},
volume = {51},
number = {4},
pages = {935--943}
}
@article{Vijay:2012gy,
author = {Vijay, Nagarjun and Vijay, Nagarjun and Poelstra, Jelmer W and Poelstra, Jelmer W and K{\"u}nstner, Axel and K{\"u}nstner, Axel and Wolf, Jochen B W},
title = {{Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive \textit{in silico} assessment of RNA-seq experiments.}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {3},
pages = {620--634},
month = feb
}
@article{KalcounisRuppell:2001vh,
author = {Kalcounis-Ruppell, MC and Patrick, A and Millar, JS},
title = {{Effect of fluorescent powder marking of females on mate choice by male white-footed mice (\textit{Peromyscus} leucopus)}},
journal = {American Midland Naturalist},
year = {2001},
volume = {146},
number = {2},
pages = {429--433}
}
@article{Campbell:2008eo,
author = {Campbell, Peter J and Stephens, Philip J and Pleasance, Erin D and O'meara, Sarah and Li, Heng and Santarius, Thomas and Stebbings, Lucy A and Leroy, Catherine and Edkins, Sarah and Hardy, Claire and Teague, Jon W and Menzies, andrew and Goodhead, Ian and Turner, Daniel J and Clee, Christopher M and Quail, Michael A and Cox, Antony and Brown, Clive and Durbin, Richard and Hurles, Matthew E and Edwards, Paul A W and Bignell, Graham R and Stratton, Michael R and Futreal, P andrew},
title = {{Identification of somatically acquired rearrangements in cancer using genome-wide massively parallel paired-end sequencing}},
journal = {Nature Genetics},
year = {2008},
volume = {40},
number = {6},
pages = {722--729},
month = apr
}
@article{Altmann:1977wb,
author = {Altmann, S A and Wagner, S S and Lenington, S},
title = {{Two models for evolution of polygyny}},
journal = {Behavioral Ecology and Sociobiology},
year = {1977},
volume = {2},
number = {4},
pages = {397--410}
}
@article{Tregenza:2000ve,
author = {Tregenza, T and Wedell, N},
title = {{Genetic compatibility, mate choice and patterns of parentage: Invited review}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {8},
pages = {1013--1027}
}
@article{Feher:2009fc,
author = {Feh{\'e}r, Olga and Wang, Haibin and Saar, Sigal and Mitra, Partha P and Tchernichovski, ofer},
title = {{\textit{De novo} establishment of wild-type song culture in the zebra finch}},
journal = {Nature},
year = {2009},
volume = {459},
number = {7246},
pages = {564--568},
month = may
}
@article{Schmoll:2007hz,
author = {Schmoll, T and Schurr, F M and Winkel, W and Epplen, J T and Lubjuhn, T},
title = {{Polyandry in coal tits Parus ater: fitness consequences of putting eggs into multiple genetic baskets}},
journal = {Journal of Evolutionary Biology},
year = {2007},
volume = {20},
number = {3},
pages = {1115--1125},
month = may
}
@article{Moreno:2009cs,
author = {Moreno, Pilar and Alvarez, Macarena and Lopez, Lilia and Moratorio, Gonzalo and Casane, Didier and Castells, Matias and Castro, Silvia and Cristina, Juan and Colina, Rodney},
title = {{Evidence of recombination in Hepatitis C Virus populations infecting a hemophiliac patient}},
journal = {Virology Journal},
year = {2009},
volume = {6},
number = {1},
pages = {203}
}
@article{MunshiSouth:2010bx,
author = {Munshi-South, Jason and Kharchenko, Katerina},
title = {{Rapid, pervasive genetic differentiation of urban white-footed mouse (\textit{Peromyscus} leucopus) populations in New York City}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {19},
pages = {4242--4254},
month = sep
}
@article{Moller:2009wp,
author = {Moller, anders Pape and Cuervo},
title = {{Correspondence: Minisatellite mutation rates increase with extra-pair paternity
among birds}},
year = {2009},
pages = {1--22},
month = may
}
@article{OLSSON:1994wn,
author = {OLSSON, M and MADSEN, T and SHINE, R and GULLBERG, A and Tegelstrom, H},
title = {{REWARDS OF PROMISCUITY - REPLY}},
journal = {Nature},
year = {1994},
volume = {372},
number = {6503},
pages = {230--230}
}
@article{Wang:2010iv,
author = {Wang, Y and Hey, J},
title = {{Estimating Divergence Parameters With Small Samples From a Large Number of Loci}},
journal = {Genetics},
year = {2010},
volume = {184},
number = {2},
pages = {363--379},
month = jan
}
@article{Durish:2004un,
author = {Durish, ND and Halcomb, KE and Kilpatrick, CW and Bradley, RD},
title = {{Molecular systematics of the \textit{Peromyscus} truei species group}},
journal = {Journal of Mammalogy},
year = {2004},
volume = {85},
number = {6},
pages = {1160--1169}
}
@article{Bartal:2011ff,
author = {Bartal, I B A and Bartal, I B A and Decety, J and Decety, J and Mason, P and Mason, P},
title = {{Empathy and Pro-Social Behavior in Rats}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6061},
pages = {1427--1430},
month = dec
}
@article{Crew:1996vr,
author = {Crew, MD and Bates, LM and Bates, LM and Douglass, CA and York, JL and York, JL},
title = {{Expressed \emph{\textit{Peromyscus} \textit{maniculatus}} (Pema) MHC class I genes: Evolutionary implications and the identification of a gene encoding a Qa1-like antigen}},
journal = {Immunogenetics},
year = {1996},
volume = {44},
number = {3},
pages = {177--185}
}
@article{Derrien:2011ge,
author = {Derrien, Thomas and Derrien, Thomas and Vaysse, Amaury and Vaysse, Amaury and andr{\'e}, Catherine and andr{\'e}, Catherine and Hitte, Christophe and Hitte, Christophe},
title = {{Annotation of the domestic dog genome sequence: finding the missing genes}},
journal = {Mammalian Genome},
year = {2011},
month = nov
}
@article{Anonymous:DRsi4YUS,
title = {{DDIG 2008 review 3}},
year = {2008},
pages = {2},
month = apr
}
@article{vandenBussche:1999ug,
author = {van den Bussche, RA and Hoofer, SR and Lochmiller, RL},
title = {{Characterization of Mhc-DRB allelic diversity in white-tailed deer (\textit{Odocoileus virginianus}) provides insight into Mhc-DRB allelic evolution within Cervidae}},
journal = {Immunogenetics},
year = {1999},
volume = {49},
number = {5},
pages = {429--437}
}
@article{Rohland:2010bq,
author = {Rohland, Nadin and Siedel, Heike and Hofreiter, Michael},
title = {{A rapid column-based ancient DNA extraction method for increased sample throughput}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {10},
number = {4},
pages = {677--683},
month = dec
}
@article{Kleftogiannis:2013gh,
author = {Kleftogiannis, Dimitrios and Kalnis, Panos and Bajic, Vladimir B},
title = {{Comparing Memory-Efficient Genome Assemblers on Stand-Alone and Cloud Infrastructures}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {9},
pages = {e75505},
month = sep
}
@article{Alonso:2006di,
author = {ALONSO, D and ETIENNE, R and MCKANE, A},
title = {{The merits of neutral theory}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {8},
pages = {451--457},
month = aug
}
@article{Diaz:1999jw,
author = {Diaz, G},
title = {{Kidney structure and allometry of Argentine desert rodents}},
journal = {Journal of Arid Environments},
year = {1999},
volume = {41},
number = {4},
pages = {453--461},
month = apr
}
@article{Robinson:2010cw,
author = {Robinson, Mark D and McCarthy, Davis J. and McCarthy, Davis J. and Smyth, Gordon K},
title = {{edgeR: a Bioconductor package for differential expression analysis of digital gene expression data}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {1},
pages = {139--140}
}
@article{Aguila:2011gf,
author = {Aguila, F{\~A} bio Alves and Oliveira-Pelegrin, Gabriela Ravanelli and Yao, Song Tieng and Murphy, David and Rocha, Maria Jos{\'e} Alves},
title = {{Brain Research Bulletin}},
journal = {Brain Research Bulletin},
year = {2011},
volume = {86},
number = {3-4},
pages = {239--245},
month = oct
}
@article{Tomaszycki:2006uu,
author = {Tomaszycki, ML and Tomaszycki, ML and Adkins-Regan, E and Adkins-Regan, E},
title = {{Is male song quality important in maintaining pair bonds?}},
journal = {Behaviour},
year = {2006},
volume = {143},
pages = {549--567}
}
@article{Pasch:2013dz,
author = {Pasch, Bret and Bolker, Benjamin M and Phelps, Steven M},
title = {{Interspecific Dominance Via Vocal Interactions Mediates Altitudinal Zonation in Neotropical Singing Mice}},
journal = {The American Naturalist},
year = {2013},
pages = {000--000},
month = aug
}
@article{Baverstock:1976io,
author = {Baverstock, P R and Baverstock, P R},
title = {{Water Balance and Kidney Function in Four Species of Rattus From Ecologically Diverse Environments.}},
journal = {Australian Journal of Zoology},
year = {1976},
volume = {24},
number = {1},
pages = {7--17}
}
@article{Miyakawa:2003gw,
author = {Miyakawa, T},
title = {{Conditional calcineurin knockout mice exhibit multiple abnormal behaviors related to schizophrenia}},
journal = {PNAS},
year = {2003},
volume = {100},
number = {15},
pages = {8987--8992},
month = jul
}
@article{Theunert:2012jd,
author = {Theunert, C and Tang, K and Lachmann, M and Hu, S and Stoneking, M},
title = {{Inferring the History of Population Size Change from Genome-Wide SNP Data}},
journal = {Molecular Biology and Evolution},
year = {2012},
volume = {29},
number = {12},
pages = {3653--3667},
month = nov
}
@article{Colgan:2009dh,
author = {Colgan, D. J. and Colgan, D. J. and da Costa, P. and da Costa, P.},
title = {{The mitochondrial DNA haplotypes of snails of the estuarine hydrobiid genus Tatea cross species and biogeographic boundaries}},
journal = {Marine and Freshwater Research},
year = {2009},
volume = {60},
number = {8},
pages = {861--872}
}
@article{COOK:1958vj,
author = {COOK, EF and BEER, JR},
title = {{A STUDY OF LOUSE POPULATIONS ON THE MEADOW VOLE AND DEER MOUSE}},
journal = {Ecology},
year = {1958},
volume = {39},
number = {4},
pages = {645--659}
}
@article{Dawson:2008jz,
author = {Dawson, Paul Anthony and Gardiner, Brooke and Lee, Soohyun and Grimmond, Sean and Markovich, Daniel},
title = {{Kidney transcriptome reveals altered steroid homeostasis in NaS1 sulfate transporter null mice}},
journal = {The Journal of Steroid Biochemistry and Molecular Biology},
year = {2008},
volume = {112},
number = {1-3},
pages = {55--62},
month = nov
}
@article{Roy:2006js,
author = {Roy, H E and Steinkraus, D C and Eilenberg, J and Hajek, A E and Pell, J K},
title = {{BIZARRE INTERACTIONS AND ENDGAMES: Entomopathogenic Fungi and Their Arthropod Hosts}},
journal = {Annual Review of Entomology},
year = {2006},
volume = {51},
number = {1},
pages = {331--357},
month = jan
}
@article{Leggett:2013ce,
author = {Leggett, Helen C and Buckling, Angus and Long, Gr{\'a}inne H and Boots, Mike},
title = {{Generalism and the evolution of parasite virulence}},
journal = {Trends In Ecology {\&} Evolution},
year = {2013},
volume = {28},
number = {10},
pages = {592--596},
month = oct
}
@article{Bush:1999vj,
author = {Bush, RM and Bender, CA and Subbarao, K and Cox, NJ and Fitch, WM},
title = {{Predicting the evolution of human influenza A}},
journal = {Science (New York, NY)},
year = {1999},
volume = {286},
number = {5446},
pages = {1921--1925}
}
@article{OBrien:2011tm,
author = {O'Brien, EL and Dawson, RD and Dawson, RD},
title = {{Plumage color and food availability affect male reproductive success in a socially monogamous bird}},
journal = {Behavioral Ecology},
year = {2011},
volume = {22},
number = {1},
pages = {66}
}
@article{NAGY:1994ta,
author = {Nagy, KA and Gruchacz, MJ},
title = {{Seasonal Water and Energy-Metabolism of the Desert-Dwelling Kangaroo Rat (\emph{\textit{Dipodomys} \textit{merriami}})}},
journal = {Physiological Zoology},
year = {1994},
volume = {67},
number = {6},
pages = {1461--1478}
}
@article{GARG:2012kp,
author = {GARG, KRITIKA M and GARG, KRITIKA M and CHATTOPADHYAY, BALAJI and CHATTOPADHYAY, BALAJI and DOSS D, PARAMANATHA SWAMI and DOSS D, PARAMANATHA SWAMI and A K, VINOTH KUMAR and A K, VINOTH KUMAR and KANDULA, SRIPATHI and KANDULA, SRIPATHI and RAMAKRISHNAN, UMA and RAMAKRISHNAN, UMA},
title = {{Promiscuous mating in the harem-roosting fruit bat, Cynopterus sphinx.}},
journal = {Molecular Ecology},
year = {2012},
month = jun
}
@article{Anonymous:ItvHEbDT,
title = {{Behavioral Ecology 2000 REEVE}},
year = {2000},
pages = {8},
month = nov
}
@article{Rogers:1992vy,
author = {Rogers, AR and Harpending, H},
title = {{Population growth makes waves in the distribution of pairwise genetic differences}},
journal = {Molecular Biology and Evolution},
year = {1992},
volume = {9},
number = {3},
pages = {552--569}
}
@article{Huang:2013jr,
author = {Huang, Yong and Shen, Guang-Mao and Jiang, Hong-Bo and Jiang, Xuan-Zhao and Dou, Wei and Wang, Jin-Jun},
title = {{Multiple P450 genes: Identification, tissue-specific expression and their responses to insecticide treatments in the oriental fruit fly, \textit{Bactrocera dorsalis}(Hendel)(Diptera: Tephritidea)}},
journal = {Pesticide Biochemistry and Physiology},
year = {2013}
}
@article{Pavy:2008iw,
author = {Pavy, Nathalie and Boyle, Brian and Nelson, Colleen and Paule, Charles and Giguere, Isabelle and Caron, Sebastien and Parsons, Lee S and Dallaire, Nancy and Bedon, Frank and Berube, Hugo and Cooke, Janice and Mackay, John},
title = {{Identification of conserved core xylem gene sets: conifer cDNA microarray development, transcript profiling and computational analyses}},
journal = {New Phytologist},
year = {2008},
volume = {180},
number = {4},
pages = {766--786},
month = dec
}
@article{Miles:2009ko,
author = {Miles, Lee G and Isberg, Sally R and Glenn, Travis C and Lance, Stacey L and Dalzell, Pauline and Thomson, Peter C and Moran, Chris},
title = {{A genetic linkage map for the saltwater crocodile (Crocodylus porosus).}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
pages = {339}
}
@article{Anonymous:2013cy,
author = {Ilie, Lucian and Ilie, Lucian and Molnar, Michael and Molnar, Michael},
title = {{RACER: Rapid and accurate correction of errors in reads.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {19},
pages = {2490--2493},
month = oct
}
@article{Delhey:2003in,
author = {Delhey, K and Johnsen, A and Peters, A and andersson, S and Kempenaers, B},
title = {{Paternity analysis reveals opposing selection pressures on crown coloration in the blue tit (Parus caeruleus)}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2003},
volume = {270},
number = {1528},
pages = {2057--2063},
month = oct
}
@article{Johnston:2008jl,
author = {Johnston, Aaron N and Anthony, Robert G},
title = {{Small-Mammal Microhabitat Associations and Response to Grazing in Oregon}},
journal = {Journal of Wildlife Management},
year = {2008},
volume = {72},
number = {8},
pages = {1736--1746},
month = nov
}
@article{Wilding:2009it,
author = {Wilding, Craig S and Weetman, David and Steen, Keith and Donnelly, Martin J},
title = {{High, clustered, nucleotide diversity in the genome of Anopheles gambiae revealed through pooled-template sequencing: implications for high-throughput genotyping protocols}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {320}
}
@article{Smith:2008bm,
author = {Smith, Lydia L and Fessler, Jennifer L and Alfaro, Michael E and Streelman, J Todd and Westneat, Mark W},
title = {{Phylogenetic relationships and the evolution of regulatory gene sequences in the parrotfishes}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2008},
volume = {49},
number = {1},
pages = {136--152},
month = oct
}
@article{AubinHorth:2007if,
journal = {Molecular Ecology},
volume = {16},
number = {7}
}
@article{Curley:2005tv,
author = {Curley, J and Keverne, E},
title = {{Genes, brains and mammalian social bonds}},
journal = {Trends In Ecology {\&} Evolution},
year = {2005}
}
@article{Herman:2012fn,
author = {Herman, J P and McKlveen, J M and Solomon, M B and Carvalho-Netto, E and Myers, B},
title = {{Neural regulation of the stress response: glucocorticoid feedback mechanisms}},
journal = {Brazilian Journal of Medical and Biological Research},
year = {2012},
volume = {45},
number = {4},
pages = {292--298}
}
@article{Byrne:2009es,
author = {Byrne, P G and Keogh, J S},
title = {{Extreme sequential polyandry insures against nest failure in a frog}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1654},
pages = {115--120},
month = jan
}
@article{Eldon:2008gv,
author = {Eldon, B and Wakeley, J},
title = {{Linkage Disequilibrium Under Skewed offspring Distribution Among Individuals in a Population}},
journal = {Genetics},
year = {2008},
volume = {178},
number = {3},
pages = {1517--1532},
month = feb
}
@article{Puurtinen:2009iu,
author = {Puurtinen, Mikael and Ketola, Tarmo and Kotiaho, J S},
title = {{The Good-Genes and Compatible-Genes Benefits of Mate Choice}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {5},
pages = {741--752},
month = nov
}
@article{Mueller:2005jv,
author = {Mueller, J L},
title = {{Cross-Species Comparison of \textit{Drosophila} Male Accessory Gland Protein Genes}},
journal = {Genetics},
year = {2005},
volume = {171},
number = {1},
pages = {131--143},
month = jun
}
@article{Thomas:2004bi,
author = {Thomas, Chris D and Cameron, Alison and Green, Rhys E and Bakkenes, Michel and Beaumont, Linda J and Collingham, Yvonne C and Erasmus, Barend F N and de Siqueira, Marinez Ferreira and Grainger, Alan and Hannah, Lee and Hughes, Lesley and Huntley, Brian and van Jaarsveld, Albert S and Midgley, Guy F and Miles, Lera and Ortega-Huerta, Miguel A and Townsend Peterson, A and Phillips, Oliver L and Williams, Stephen E},
title = {{Extinction risk from climate change}},
journal = {Nature},
year = {2004},
volume = {427},
number = {6970},
pages = {145--148},
month = jan
}
@article{Rokyta:2005jr,
author = {Rokyta, Darin R and Joyce, Paul and Caudle, S Brian and Wichman, Holly A},
title = {{An empirical test of the mutational landscape model of adaptation using a single-stranded DNA virus}},
journal = {Nature Genetics},
year = {2005},
volume = {37},
number = {4},
pages = {441--444},
month = mar
}
@article{Lutermann:2008kn,
author = {Lutermann, H and Bennett, N C},
title = {{Strong immune function: a benefit promoting the evolution of sociality?}},
journal = {Journal of Zoology},
year = {2008},
volume = {275},
number = {1},
pages = {26--32},
month = may
}
@article{Administrator:2012ug,
author = {{Administrator}},
title = {{Microsoft Word - 5577_1_auth_cl_1_m5kqjf.doc}},
year = {2012},
pages = {1--7},
month = jun
}
@article{Rosenfeld:2013ika,
author = {Rosenfeld, Cheryl S and Rosenfeld, Cheryl S and Johnson, Sarah A and Johnson, Sarah A and Ellersieck, Mark R and Ellersieck, Mark R and Roberts, R Michael and Roberts, R Michael},
title = {{Interactions between Parents and Parents and Pups in the Monogamous California Mouse (\textit{Peromyscus} \textit{californicus})}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {9},
pages = {e75725},
month = sep
}
@article{McGraw:2004hg,
author = {McGraw, Lisa A and Gibson, Greg and Clark, andrew G and Wolfner, Mariana F},
title = {{Genes Regulated by Mating, Sperm, or Seminal Proteins in Mated Female \textit{Drosophila} \textit{melanogaster}}},
journal = {Current Biology},
year = {2004},
volume = {14},
number = {16},
pages = {1509--1514},
month = aug
}
@article{Fehrer:2010jw,
author = {Fehrer, J},
title = {{Unraveling the mysteries of reproduction}},
journal = {Heredity},
year = {2010},
volume = {104},
number = {5},
pages = {421--422},
month = mar
}
@article{Hughes:2008cf,
author = {Hughes, W O H and Oldroyd, B P and Beekman, M and Ratnieks, F L W},
title = {{Ancestral Monogamy Shows Kin Selection Is Key to the Evolution of Eusociality}},
journal = {Science (New York, NY)},
year = {2008},
volume = {320},
number = {5880},
pages = {1213--1216},
month = may
}
@article{Lawniczak:2007jb,
author = {Lawniczak, M K N and Begun, D J},
title = {{Molecular population genetics of female-expressed mating-induced serine proteases in \textit{Drosophila} \textit{melanogaster}}},
journal = {Molecular Biology and Evolution},
year = {2007},
volume = {24},
number = {9},
pages = {1944--1951},
month = may
}
@article{Vignieri:2010jw,
author = {Vignieri, Sacha N and Larson, Joanna G and Hoekstra, Hopi E},
title = {{The selective advantage of crypsis in mice.}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {7},
pages = {2153--2158},
month = jul
}
@article{Roberts:2013dy,
author = {Roberts, Richard J and Roberts, Richard J and Carneiro, Mauricio O and Carneiro, Mauricio O and Schatz, Michael C},
title = {{The advantages of SMRT sequencing}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {6},
pages = {405}
}
@article{Lukas:2013jz,
author = {Lukas, D and Clutton-Brock, T H},
title = {{The evolution of social monogamy in mammals.}},
journal = {Science (New York, NY)},
year = {2013},
volume = {341},
number = {6145},
pages = {526--530},
month = aug
}
@article{Schaschl:2004tf,
author = {Schaschl, Helmut and Goodman, Simon J and Suchentrunk, Franz},
title = {{Sequence analysis of the MHC class II DRB alleles in Alpine chamois (Rupicapra r. rupicapra)}},
journal = {Developmental and comparative immunology},
year = {2004},
volume = {28},
number = {3},
pages = {265--277},
month = mar
}
@article{Nagata:2009fq,
author = {Nagata, Takashi and Koyanagi, Mitsumasa and Tsukamoto, Hisao and Terakita, Akihisa},
title = {{Identification and characterization of a protostome homologue of peropsin from a jumping spider}},
journal = {Journal of Comparative Physiology A},
year = {2009},
volume = {196},
number = {1},
pages = {51--59},
month = dec
}
@article{Moller:1991wn,
author = {Moller, AP},
title = {{SPERM COMPETITION, SPERM DEPLETION, PATERNAL CARE, AND RELATIVE TESTIS SIZE IN BIRDS}},
journal = {The American Naturalist},
year = {1991},
volume = {137},
number = {6},
pages = {882--906}
}
@article{Xi:2011db,
author = {Xi, Ruibin and Xi, Ruibin and Hadjipanayis, Angela G and Hadjipanayis, Angela G and Luquette, Lovelace J and Luquette, Lovelace J and Kim, Tae-Min and Kim, Tae-Min and Lee, Eunjung and Lee, Eunjung and Zhang, Jianhua and Zhang, Jianhua and Johnson, Mark D and Johnson, Mark D and Muzny, Donna M and Wheeler, David A and Wheeler, David A and Gibbs, Richard A and Kucherlapati, Raju and Kucherlapati, Raju and Park, Peter J},
title = {{Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {46},
pages = {E1128--36},
month = nov
}
@article{Reik:2001wv,
author = {Reik, W and Dean, W and Dean, W and Walter, J and Walter, J},
title = {{Epigenetic reprogramming in mammalian development}},
journal = {Science (New York, NY)},
year = {2001},
volume = {293},
number = {5532},
pages = {1089--1093}
}
@article{Naugler:2008fx,
author = {Naugler, Christopher and Liwski, Robert},
title = {{An evolutionary approach to major histocompatibility diversity based on allele supertypes}},
journal = {Medical Hypotheses},
year = {2008},
volume = {70},
number = {5},
pages = {933--937},
month = jan
}
@article{Caro:2011bg,
author = {Caro, Tim and Sherman, Paul W},
title = {{Endangered species and a threatened discipline: behavioural ecology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2011},
volume = {26},
number = {3},
pages = {111--118},
month = mar
}
@article{Montain:1999ux,
author = {Montain, SJ and Latzka, WA and Sawka, NM},
title = {{Fluid replacement recommendations for training in hot weather.}},
journal = {Military medicine},
year = {1999},
volume = {164},
number = {7},
pages = {502--508},
month = jul
}
@article{Pelc:2009cq,
author = {Pelc, R A and Pelc, R A and Warner, R R and Warner, R R and Gaines, S D and Gaines, S D},
title = {{Geographical patterns of genetic structure in marine species with contrasting life histories}},
journal = {Journal of Biogeography},
year = {2009},
volume = {36},
number = {10},
pages = {1881--1890}
}
@article{Jones:2001vy,
author = {Jones, AG and Avise, JC},
title = {{Mating systems and sexual selection in male-pregnant pipefishes and seahorses: Insights from microsatellite-based studies of maternity}},
journal = {Journal of Heredity},
year = {2001},
volume = {92},
number = {2},
pages = {150--158}
}
@article{Ronen:2013jma,
author = {Ronen, R and Udpa, N and Halperin, E and Bafna, V},
title = {{Learning Natural Selection from the Site Frequency Spectrum}},
journal = {Genetics},
year = {2013},
volume = {195},
number = {1},
pages = {181--193},
month = sep
}
@article{Sikes:2011dz,
author = {Sikes, Robert S and Gannon, William L and {Animal Care and Use Committee of the American Society of Mammalogists}},
title = {{Guidelines of the American Society of Mammalogists for the use of wild mammals in research}},
journal = {Journal of Mammalogy},
year = {2011},
volume = {92},
number = {1},
pages = {235--253},
month = feb
}
@article{Pischedda:2012gn,
author = {Pischedda, Alison and Pischedda, Alison and Rice, William R and Rice, William R},
title = {{Partitioning sexual selection into its mating success and fertilization success components.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {6},
pages = {2049--2053},
month = feb
}
@article{Alvergne:2010jg,
author = {Alvergne, Alexandra and Lummaa, Virpi},
title = {{Does the contraceptive pill alter mate choice in humans?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {3},
pages = {171--179},
month = mar
}
@article{Zheng:2013ee,
author = {Zheng, Huajun and Zhang, Wenbao and Zhang, Wenbao and Zhang, Liang and Zhang, Zhuangzhi and Zhang, Zhuangzhi and Li, Jun and Lu, Gang and Lu, Gang and Zhu, Yongqiang and Zhu, Yongqiang and Wang, Yuezhu and Wang, Yuezhu and Huang, Yin and Huang, Yin and Liu, Jing and Liu, Jing and Kang, Hui and Kang, Hui and Chen, Jie and Chen, Jie and Wang, Lijun and Wang, Lijun and Chen, Aojun and Chen, Aojun and Yu, Shuting and Yu, Shuting and Gao, Zhengchao and Gao, Zhengchao and Jin, Lei and Jin, Lei and Gu, Wenyi and Gu, Wenyi and Wang, Zhiqin and Wang, Zhiqin and Zhao, Li and Zhao, Li and Shi, Baoxin and Shi, Baoxin and Wen, Hao and Wen, Hao and Lin, Renyong and Lin, Renyong and Jones, Malcolm K and Jones, Malcolm K and Brejova, Brona and Brejova, Brona and Vinar, Tom{\'a}s and Vinar, Tom{\'a}s and Zhao, Guoping and Zhao, Guoping and McManus, Donald P and McManus, Donald P and Chen, Zhu and Chen, Zhu and Zhou, Yan and Zhou, Yan and Wang, Shengyue},
title = {{The genome of the hydatid tapeworm}},
journal = {Nature Genetics},
year = {2013},
volume = {45},
number = {10},
pages = {1168--1175},
month = sep
}
@article{Donahue:2003wv,
author = {Donahue, MJ and Holyoak, M and Holyoak, M and Feng, C and Feng, C},
title = {{Patterns of dispersal and dynamics among habitat patches varying in quality}},
journal = {The American Naturalist},
year = {2003},
volume = {162},
number = {3},
pages = {302--317}
}
@article{Anonymous:2012bx,
title = {{Female Red-backed Fairy-Wrens ( Malurus melanocephalus) do not appear to pay a cost for high rates of promiscuity}},
journal = {The Auk},
year = {2012},
volume = {129},
number = {3},
pages = {529--536},
month = jul
}
@article{Simpson:2009iv,
author = {Simpson, J T and Wong, K and Jackman, S D and Schein, J E and Jones, S J M and Birol, I},
title = {{ABySS: A parallel assembler for short read sequence data}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {6},
pages = {1117--1123},
month = jun
}
@article{Dohm:2008ky,
author = {Dohm, J C and Lottaz, C and Borodina, T and Himmelbauer, H},
title = {{Substantial biases in ultra-short read data sets from high-throughput DNA sequencing}},
journal = {Nucleic Acids Research},
year = {2008},
volume = {36},
number = {16},
pages = {e105--e105},
month = aug
}
@article{Schwensow:2008hj,
author = {Schwensow, Nina and Fietz, Joanna and Dausmann, Kathrin and Sommer, Simone},
title = {{MHC-associated mating strategies and the importance of overall genetic diversity in an obligate pair-living primate}},
journal = {Evolutionary Ecology},
year = {2007},
volume = {22},
number = {5},
pages = {617--636},
month = jul
}
@article{Kay:2008jn,
author = {Kay, Emily H and Kay, Emily H and Hoekstra, Hopi E},
title = {{Rodents.}},
journal = {Current biology : CB},
year = {2008},
volume = {18},
number = {10},
pages = {R406--10},
month = may
}
@article{Bilde:2009id,
author = {Bilde, T and Foged, A and Schilling, N and Arnqvist, G},
title = {{Postmating Sexual Selection Favors Males That Sire offspring with Low Fitness}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5935},
pages = {1705--1706},
month = jun
}
@article{Lu:2014fr,
author = {Lu, A and Guindon, S},
title = {{Performance of Standard and Stochastic Branch-Site Models for Detecting Positive Selection among Coding Sequences}},
journal = {Molecular Biology and Evolution},
year = {2014},
volume = {31},
number = {2},
pages = {484--495},
month = jan
}
@article{Zhang:2012jc,
author = {Zhang, Rui and Zhang, Rui and Clark, andrew G and Fiumera, Anthony C},
title = {{Natural genetic variation in male reproductive genes contributes to nontransitivity of sperm competitive ability in \textit{Drosophila} \textit{melanogaster}}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = nov
}
@article{Weigler:1988uz,
author = {Weigler, B J and Weigler, B J and Girjes, A A and Girjes, A A and White, N A and White, N A and Kunst, N D and Kunst, N D and Carrick, F N and Carrick, F N and Lavin, M F and Lavin, M F},
title = {{Aspects of the epidemiology of \emph{Chlamydia psittaci} infection in a population of koalas (\emph{Phascolarctos cinereus}) in southeastern Queensland, Australia.}},
journal = {Journal of Wildlife Diseases},
year = {1988},
volume = {24},
number = {2},
pages = {282--291},
month = apr
}
@article{Wolff:1997us,
author = {Wolff, JO},
title = {{Population regulation in mammals: An evolutionary perspective}},
journal = {Journal of Animal Ecology},
year = {1997},
volume = {66},
number = {1},
pages = {1--13}
}
@article{Handel:2008jl,
author = {Handel, A and Bennett, M R},
title = {{Surviving the Bottleneck: Transmission Mutants and the Evolution of Microbial Populations}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {4},
pages = {2193--2200},
month = oct
}
@article{Matocq:2012jr,
author = {Matocq, Marjorie D and Matocq, Marjorie D and Kelly, Patrick A and Kelly, Patrick A and Phillips, Scott E and Phillips, Scott E and Maldonado, Jesus E and Maldonado, Jesus E},
title = {{Reconstructing the evolutionary history of an endangered subspecies across the changing landscape of the Great Central Valley of California}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {24},
pages = {5918--5933},
month = oct
}
@article{Gouy:2009jv,
author = {Gouy, M and Guindon, S and Gascuel, O},
title = {{SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {2},
pages = {221--224},
month = jan
}
@article{Conway:2011iv,
author = {Conway, Thomas C and Conway, Thomas C and Bromage, andrew J and Bromage, andrew J},
title = {{Succinct data structures for assembling large genomes.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {4},
pages = {479--486},
month = feb
}
@article{Youngson:2008fw,
author = {Youngson, Neil A and Whitelaw, Emma},
title = {{Transgenerational Epigenetic Effects}},
journal = {Annual Review of Genomics and Human Genetics},
year = {2008},
volume = {9},
number = {1},
pages = {233--257},
month = sep
}
@article{Barluenga:2006gf,
author = {Barluenga, Marta and St{\"o}lting, Kai N and Salzburger, Walter and Muschick, Moritz and Meyer, Axel},
title = {{Sympatric speciation in Nicaraguan crater lake cichlid fish}},
journal = {Nature},
year = {2006},
volume = {439},
number = {7077},
pages = {719--723},
month = feb
}
@article{Dochtermann:2011er,
author = {Dochtermann, Ned A and Jenkins, Stephen H},
title = {{Developing multiple hypotheses in behavioral ecology}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {65},
number = {1},
pages = {37--45},
month = sep
}
@article{ANDERSON:1974up,
author = {ANDERSON, WW},
title = {{FREQUENT MULTIPLE INSEMINATION IN A NATURAL-POPULATION OF DROSOPHILA-PSEUDOOBSCURA}},
journal = {The American Naturalist},
year = {1974},
volume = {108},
number = {963},
pages = {709--711}
}
@article{NEI:1981vb,
author = {NEI, M and Tajima, F},
title = {{GENETIC DRIFT AND ESTIMATION OF EFFECTIVE POPULATION-SIZE}},
journal = {Genetics},
year = {1981},
volume = {98},
number = {3},
pages = {625--640}
}
@article{Moya:2004ij,
author = {Moya, andres and Holmes, Edward C and Gonz{\'a}lez-Candelas, Fernando},
title = {{The population genetics and evolutionary epidemiology of RNA viruses}},
journal = {Nature Reviews Microbiology},
year = {2004},
volume = {2},
number = {4},
pages = {279--288},
month = apr
}
@article{Cornwallis:2009ev,
author = {Cornwallis, C K and O'connor, E A},
title = {{Sperm: seminal fluid interactions and the adjustment of sperm quality in relation to female attractiveness}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1672},
pages = {3467--3475},
month = aug
}
@article{Lariviere:2002tu,
author = {Lariviere, S and Lariviere, S and Ferguson, SH and Ferguson, SH},
title = {{On the evolution of the mammalian baculum: vaginal friction, prolonged intromission or induced ovulation?}},
journal = {Mammal Review},
year = {2002},
volume = {32},
number = {4},
pages = {283--294}
}
@article{Sauna:2011jx,
author = {Sauna, Zuben E and Kimchi-Sarfaty, Chava},
title = {{Understanding the contribution of synonymous mutations to human disease.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {10},
pages = {683--691},
month = oct
}
@article{Granger:2012bd,
author = {Granger, E M and Granger, E M and Bevis, T H and Bevis, T H and Saka, Y and Saka, Y and Southerland, S A and Southerland, S A and Sampson, V and Sampson, V and Tate, R L and Tate, R L},
title = {{The Efficacy of Student-Centered Instruction in Supporting Science Learning}},
journal = {Science (New York, NY)},
year = {2012},
volume = {338},
number = {6103},
pages = {105--108},
month = oct
}
@article{Price:2008go,
author = {Price, Tom A R and Wedell, Nina},
title = {{Selfish genetic elements and sexual selection: their impact on male fertility}},
journal = {Genetica},
year = {2007},
volume = {132},
number = {3},
pages = {295--307},
month = jul
}
@article{Buschiazzo:2011dw,
author = {Buschiazzo, Emmanuel and Buschiazzo, Emmanuel and Beck, Josephine S and Beck, Josephine S and Gemmell, Neil J and Gemmell, Neil J},
title = {{Design and Implementation of Degenerate Microsatellite Primers for the Mammalian Clade}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {12},
pages = {e29582},
month = dec
}
@article{Yang:2007im,
author = {Yang, Yimu and Cui, Yujun and Fan, Zheng and Cook, George A and Nishimura, Hiroko},
title = {{Two distinct aquaporin-4 cDNAs isolated from medullary cone of quail kidney}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2007},
volume = {147},
number = {1},
pages = {84--93},
month = may
}
@article{Bruintjes:2008ga,
author = {Bruintjes, R and Taborsky, M},
title = {{Helpers in a cooperative breeder pay a high price to stay: effects of demand, helper size and sex}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {6},
pages = {1843--1850},
month = jun
}
@article{Anonymous:vp8kGTuH,
title = {{lattice}},
year = {2011},
pages = {1--158},
month = aug
}
@article{GETZ:1981ug,
author = {GETZ, LL and Carter, CS and GAVISH, L and GAVISH, L},
title = {{THE MATING SYSTEM OF THE PRAIRIE VOLE, MICROTUS-OCHROGASTER - FIELD AND LABORATORY EVIDENCE FOR PAIR-BONDING}},
journal = {Behavioral Ecology and Sociobiology},
year = {1981},
volume = {8},
number = {3},
pages = {189--194}
}
@article{Cukier:2010ft,
author = {Cukier, Holly N and Rabionet, Raquel and Konidari, Ioanna and Rayner-Evans, Melissa Y and Baltos, Mary L and Wright, Harry H and Abramson, Ruth K and Martin, Eden R and Cuccaro, Michael L and Pericak-Vance, Margaret A and Gilbert, John R},
title = {{Novel variants identified in methyl-CpG-binding domain genes in autistic individuals}},
journal = {neurogenetics},
year = {2009},
volume = {11},
number = {3},
pages = {291--303},
month = nov
}
@article{Gravlee:2009fd,
author = {Gravlee, Clarence C and Non, Amy L and Mulligan, Connie J},
title = {{Genetic Ancestry, Social Classification, and Racial Inequalities in Blood Pressure in Southeastern Puerto Rico}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e6821},
month = sep
}
@article{Wittenberger:1978up,
author = {Wittenberger, J F},
title = {{EVOLUTION OF MATING SYSTEMS IN GROUSE}},
journal = {The Condor},
year = {1978},
volume = {80},
number = {2},
pages = {126--137}
}
@article{Yang:2005hn,
author = {Yang, Z},
title = {{Bayes Empirical Bayes Inference of Amino Acid Sites Under Positive Selection}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {22},
number = {4},
pages = {1107--1118},
month = jan
}
@article{Eldon:2009fa,
author = {Eldon, B and Wakeley, J},
title = {{Coalescence Times and FST Under a Skewed offspring Distribution Among Individuals in a Population}},
journal = {Genetics},
year = {2008},
volume = {181},
number = {2},
pages = {615--629},
month = nov
}
@article{Moore:2008js,
author = {Moore, Jennifer A and Nelson, Nicola J and Keall, Susan N and Daugherty, Charles H},
title = {{Implications of social dominance and multiple paternity for the genetic diversity of a captive-bred reptile population (tuatara)}},
journal = {Conservation Genetics},
year = {2007},
volume = {9},
number = {5},
pages = {1243--1251},
month = nov
}
@article{Wheat:2009el,
author = {Wheat, C W and Haag, C R and Marden, J H and Hanski, I and Frilander, M J},
title = {{Nucleotide Polymorphism at a Gene (Pgi) under Balancing Selection in a Butterfly Metapopulation}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {2},
pages = {267--281},
month = jan
}
@article{Jetz:2008ko,
author = {Jetz, Walter and Sekercioglu, Cagan H and B{\"o}hning-Gaese, Katrin},
title = {{The Worldwide Variation in Avian Clutch Size across Species and Space}},
journal = {PLOS Biology},
year = {2008},
volume = {6},
number = {12},
pages = {e303}
}
@article{Arnqvist:2000hz,
author = {Arnqvist, Goran and Nilsson, Tina},
title = {{The evolution of polyandry: multiple mating and female fitness in insects}},
journal = {Animal Behaviour},
year = {2000},
volume = {60},
number = {2},
pages = {145--164},
month = aug
}
@article{Rafati:2006hf,
author = {Rafati, Mohammad Reza and Rouini, Mohammad Reza and Mojtahedzadeh, Mojtaba and Najafi, Atabak and Tavakoli, Hassan and Gholami, Kheirollah and Fazeli, Mohammad Reza},
title = {{Clinical efficacy of continuous infusion of piperacillin compared with intermittent dosing in septic critically ill patients}},
journal = {International Journal of Antimicrobial Agents},
year = {2006},
volume = {28},
number = {2},
pages = {122--127},
month = aug
}
@article{Leggett:2012ft,
author = {Leggett, H C and El Mouden, C and Wild, G and West, S},
title = {{Promiscuity and the evolution of cooperative breeding}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1732},
pages = {1405--1411},
month = feb
}
@article{anderson:2006gr,
author = {anderson, E C},
title = {{The Power of Single-Nucleotide Polymorphisms for Large-Scale Parentage Inference}},
journal = {Genetics},
year = {2005},
volume = {172},
number = {4},
pages = {2567--2582},
month = dec
}
@article{Li:2006hr,
author = {Li, Weizhong and Li, Weizhong and Godzik, Adam and Godzik, Adam},
title = {{Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences.}},
journal = {Bioinformatics (Oxford, England)},
year = {2006},
volume = {22},
number = {13},
pages = {1658--1659},
month = jul
}
@article{Ives:2007cw,
author = {Ives, Anthony R and Midford, Peter E and Garland, JR., Theodore},
title = {{Within-Species Variation and Measurement Error in Phylogenetic Comparative Methods}},
journal = {Systematic Biology},
year = {2007},
volume = {56},
number = {2},
pages = {252--270},
month = apr
}
@article{Pop:2008tpa,
author = {Pravosudov, V V and Pop, M and Salzberg, S and Roth, II, T C and Forister, M L and LaDage, L D and Kramer, R and Schilkey, F and van der Linden, A M},
title = {{Bioinformatics challenges of new sequencing technology}},
journal = {Trends In Genetics},
year = {2008},
volume = {24},
number = {3},
pages = {142--149}
}
@article{Lendvai:2009dt,
author = {Lendvai, A Z and Barta, Z and Chastel, O},
title = {{Conflict over parental care in house sparrows: do females use a negotiation rule?}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {3},
pages = {651--656},
month = may
}
@article{Morgan:2009bp,
author = {Morgan, M and anders, S and Lawrence, M and Aboyoun, P and Pag{\`e}s, H and Gentleman, R},
title = {{ShortRead: a bioconductor package for input, quality assessment and exploration of high-throughput sequence data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {19},
pages = {2607--2608},
month = sep
}
@article{Joost:2013vm,
author = {Joost, S and Joost, S and Vuilleumier, S and Vuilleumier, S and Jensen, J D},
title = {{Uncovering the genetic basis of adaptive change: on the intersection of landscape genomics and theoretical population genetics}},
journal = {Molecular {\ldots}},
year = {2013}
}
@article{PAUP:wx,
author = {Swafford, D},
title = {{PAUP*: Phylogenetic analysis using Parsimony* (and other methods)}}
}
@article{Punta:2012ko,
author = {Punta, M and Coggill, P C and Eberhardt, R Y and Mistry, J and Tate, J and Boursnell, C and Pang, N and Forslund, K and Ceric, G and Clements, J and Heger, A and Holm, L and Sonnhammer, E L L and Eddy, S R and Bateman, A and Finn, R D},
title = {{The Pfam protein families database.}},
journal = {Nucleic Acids Research},
year = {2012},
volume = {40},
pages = {D290--301},
month = jan
}
@article{Excoffier:2004eo,
author = {Excoffier, Laurent},
title = {{Patterns of DNA sequence diversity and genetic structure after a range expansion: lessons from the infinite-island model}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {4},
pages = {853--864},
month = apr
}
@article{Amdam:2006ee,
author = {Amdam, Gro V and Csondes, Angela and Fondrk, M Kim and Page, Robert E},
title = {{Complex social behaviour derived from maternal reproductive traits}},
journal = {Nature},
year = {2006},
volume = {439},
number = {7072},
pages = {76--78},
month = jan
}
@article{Bernatchez:2003uf,
author = {Bernatchez, L and Landry, C},
title = {{MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years?}},
journal = {Journal of Evolutionary Biology},
year = {2003},
volume = {16},
number = {3},
pages = {363--377},
month = may
}
@article{Baerwald:2010cx,
author = {Baerwald, M R and Petersen, J L and Hedrick, R P and Schisler, G J and May, B},
title = {{A major effect quantitative trait locus for whirling disease resistance identified in rainbow trout (Oncorhynchus mykiss)}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {6},
pages = {920--926},
month = nov
}
@article{Goossens:1998tp,
author = {Goossens, B and Graziani, L and Waits, LP and Farand, E and Magnolon, S and Coulon, J and Bel, MC and Taberlet, P and Allaine, D},
title = {{Extra-pair paternity in the monogamous Alpine marmot revealed by nuclear DNA microsatellite analysis}},
journal = {Behavioral Ecology and Sociobiology},
year = {1998},
volume = {43},
number = {4-5},
pages = {281--288}
}
@article{Yuen:2006ge,
author = {Yuen, P S T},
title = {{Ischemic and nephrotoxic acute renal failure are distinguished by their broad transcriptomic responses}},
journal = {Physiological Genomics},
year = {2006},
volume = {25},
number = {3},
pages = {375--386},
month = mar
}
@article{Lize:2010bd,
author = {Lize, A and Cortesero, A M and Bagneres, A G and Poinsot, D},
title = {{Kin recognition in the larvae of a solitary insect: the cue is in the plug}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {3},
pages = {633--638},
month = apr
}
@article{Fawcett:2007gh,
author = {Fawcett, Tim W and Kuijper, Bram and Pen, Ido and Weissing, Franz J},
title = {{Should attractive males have more sons?}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {1},
pages = {71--80}
}
@article{Schmitt:2012bv,
author = {Schmitt, Michael W and Schmitt, Michael W and Kennedy, Scott R and Kennedy, Scott R and Salk, Jesse J and Salk, Jesse J and Fox, Edward J and Fox, Edward J and Hiatt, Joseph B and Loeb, Lawrence A and Loeb, Lawrence A},
title = {{Detection of ultra-rare mutations by next-generation sequencing.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = aug
}
@article{BROWN:1994vn,
author = {BROWN, JL and EKLUND, A},
title = {{KIN RECOGNITION AND THE MAJOR HISTOCOMPATIBILITY COMPLEX - AN INTEGRATIVE REVIEW}},
journal = {The American Naturalist},
year = {1994},
volume = {143},
number = {3},
pages = {435--461}
}
@article{Schwartz:2008ia,
author = {Schwartz, M A},
title = {{The importance of stupidity in scientific research}},
journal = {Journal of cell science},
year = {2008},
volume = {121},
number = {11},
pages = {1771--1771},
month = may
}
@article{Rathbun:2006de,
author = {Rathbun, G B and Rathbun, Carolyn D},
title = {{Social monogamy in the noki or dassie-rat (Petromus typicus) in Namibia}},
journal = {Mammalian Biology - Zeitschrift fur Saugetierkunde},
year = {2006},
volume = {71},
number = {4},
pages = {203--213},
month = jul
}
@article{Batzer:1996wy,
author = {Batzer, MA and Arcot, SS and Phinney, JW and AlegriaHartman, M and Kass, DH and Milligan, SM and Kimpton, C and Gill, P and Hochmeister, M and Ioannou, PA and Ioannou, PA and Herrera, RJ and Herrera, RJ and Boudreau, DA and Boudreau, DA and Scheer, WD and Scheer, WD and Keats, BJB and Keats, BJB and Deininger, PL and Deininger, PL and Stoneking, M and Stoneking, M},
title = {{Genetic variation of recent Alu insertions in human populations}},
journal = {Journal of Molecular Evolution},
year = {1996},
volume = {42},
number = {1},
pages = {22--29}
}
@article{Xia:2009ey,
author = {Xia, Q and Guo, Y and Zhang, Z and Li, D and Xuan, Z and Li, Z and Dai, F and Li, Y and Cheng, D and Li, R and Cheng, T and Jiang, T and Becquet, C and Xu, X and Liu, C and Zha, X and Fan, W and Lin, Y and Shen, Y and Jiang, L and Jensen, J and Hellmann, I and Tang, S and Zhao, P and Xu, H and Yu, C and Zhang, G and Li, J and Cao, J and Liu, S and He, N and Zhou, Y and Liu, H and Zhao, J and Ye, C and Du, Z and Pan, G and Zhao, A and Shao, H and Zeng, W and Wu, P and Li, C and Pan, M and Yin, X and Wang, J and Zheng, H and Wang, W and Zhang, X and Li, S and Yang, H and Lu, C and Nielsen, R and Zhou, Z and Xiang, Z},
title = {{Complete Resequencing of 40 Genomes Reveals Domestication Events and Genes in Silkworm (Bombyx)}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5951},
pages = {433--436},
month = oct
}
@article{Sonoda:2010eg,
author = {Sonoda, Shoji and Sonoda, Shoji},
title = {{Molecular analysis of pyrethroid resistance conferred by target insensitivity and increased metabolic detoxification in \textit{Plutella} \textit{xylostella}}},
journal = {Pest management science},
year = {2010},
volume = {66},
number = {5},
pages = {572--575},
month = may
}
@article{Tokarska:2009gs,
author = {Tokarska, M and Marshall, T and Kowalczyk, R and W{\'o}jcik, J M and Pertoldi, C and Kristensen, T N and Loeschcke, V and Gregersen, V R and Bendixen, C},
title = {{Effectiveness of microsatellite and SNP markers for parentage and identity analysis in species with low genetic diversity: the case of European bison}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {4},
pages = {326--332},
month = jul
}
@article{Wittkopp:2013jm,
author = {Wittkopp, P J and Wittkopp, P J},
title = {{Population Genetics and a Study of Speciation Using Next-Generation Sequencing: An Educational Primer for Use with "Patterns of Transcriptome Divergence in the Male Accessory Gland of Two Closely Related Species of Field Crickets"}},
journal = {Genetics},
year = {2013},
volume = {193},
number = {3},
pages = {671--675},
month = mar
}
@article{Janin:2013jf,
author = {Janin, L and Rosone, G and Cox, A J},
title = {{Adaptive reference-free compression of sequence quality scores}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {30},
number = {1},
pages = {24--30},
month = dec
}
@article{Fu:1997wl,
author = {Fu, YX},
title = {{Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection}},
journal = {Genetics},
year = {1997},
volume = {147},
number = {2},
pages = {915--925}
}
@article{Morton:2010il,
author = {Morton, Eugene S and Stutchbury, Bridget J M and Chiver, Ioana},
title = {{Parental conflict and brood desertion by females in blue-headed vireos}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {64},
number = {6},
pages = {947--954},
month = feb
}
@article{Anonymous:yzc69bhK,
title = {{Am Nat 1990 Wingfield}},
year = {2005},
pages = {19},
month = sep
}
@article{Forsberg:2007hw,
journal = {Journal of Evolutionary Biology},
year = {2007},
volume = {20},
number = {5},
month = sep
}
@article{Hughes:2003dy,
author = {Hughes, A L},
title = {{Widespread purifying selection at polymorphic sites in human protein-coding loci}},
journal = {Proceedings of the National Academy of Sciences},
year = {2003},
volume = {100},
number = {26},
pages = {15754--15757},
month = dec
}
@article{Dickinson:2001vc,
author = {Dickinson, JL},
title = {{Extrapair copulations in western bluebirds (Sialia mexicana): female receptivity favors older males}},
journal = {Behavioral Ecology and Sociobiology},
year = {2001},
volume = {50},
number = {5},
pages = {423--429}
}
@article{Riquelme:2011fq,
author = {Riquelme, C A and Riquelme, C A and Magida, J A and Magida, J A and Harrison, B C and Harrison, B C and Wall, C E and Wall, C E and Marr, T G and Marr, T G and Secor, S M and Secor, S M and Leinwand, L A and Leinwand, L A},
title = {{Fatty Acids Identified in the Burmese Python Promote Beneficial Cardiac Growth}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6055},
pages = {528--531},
month = oct
}
@article{Kokko:2003vr,
author = {Kokko, H and Brooks, R},
title = {{Sexy to die for? Sexual selection and the risk of extinction}},
journal = {Annales Zoologici Fennici},
year = {2003},
volume = {40},
number = {2},
pages = {207--219}
}
@article{Deslauriers:2011em,
author = {Deslauriers, Louis and Schelew, Ellen and Wieman, Carl},
title = {{Improved learning in a large-enrollment physics class.}},
journal = {Science (New York, NY)},
year = {2011},
volume = {332},
number = {6031},
pages = {862--864},
month = may
}
@article{Seddon:2005bt,
author = {Seddon, N and Amos, W and Adcock, G and Johnson, P and Kraaijeveld, K and KRAAIJEVELD-SMIT, F J L and Lee, W and SENAPATHI, G D and MULDER, R A and TOBIAS, J A},
title = {{Mating system, philopatry and patterns of kinship in the cooperatively breeding subdesert mesite Monias benschi}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {11},
pages = {3573--3583},
month = oct
}
@article{Boussau:2009en,
author = {Boussau, Bastien and Daubin, Vincent},
title = {{Genomes as documents of evolutionary history}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {4},
pages = {224--232},
month = apr
}
@article{Sabatini:2007ky,
author = {Sabatini, M J and Ebert, P and Lewis, D A and Levitt, P and Cameron, J L and Mirnics, K},
title = {{Amygdala Gene Expression Correlates of Social Behavior in Monkeys Experiencing Maternal Separation}},
journal = {Journal of Neuroscience},
year = {2007},
volume = {27},
number = {12},
pages = {3295--3304},
month = mar
}
@article{Rubenstein:2009gc,
author = {Rubenstein, Dustin R and Shen, Sheng-Feng},
title = {{Reproductive conflict and the costs of social status in cooperatively breeding vertebrates.}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {5},
pages = {650--661},
month = may
}
@article{Evans:2000uk,
author = {Evans, JP and Magurran, AE},
title = {{Multiple benefits of multiple mating in guppies}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {18},
pages = {10074--10076}
}
@article{Stockley:1996wn,
author = {Stockley, P and Searle, JB and Macdonald, DW and Jones, CS},
title = {{Correlates of reproductive success within alternative mating tactics of the common shrew}},
journal = {Behavioral Ecology},
year = {1996},
volume = {7},
number = {3},
pages = {334--340}
}
@article{Reverter:2008dw,
author = {Reverter, Antonio and Chan, Eva K F and Chan, Eva K F},
title = {{Combining partial correlation and an information theory approach to the reversed engineering of gene co-expression networks}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {21},
pages = {2491--2497}
}
@article{Stapley:2010eg,
author = {Stapley, Jessica and Reger, Julia and Feulner, Philine G D and Smadja, Carole and Galindo, Juan and Ekblom, Robert and Bennison, Clair and Ball, Alexander D and Beckerman, andrew P and Slate, Jon},
title = {{Adaptation genomics: the next generation}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {12},
pages = {705--712},
month = dec
}
@article{Wong:2011gk,
author = {Wong, A and Turchin, M and Wolfner, M F and Aquadro, C F},
title = {{Temporally Variable Selection on Proteolysis-Related Reproductive Tract Proteins in \textit{Drosophila}}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {29},
number = {1},
pages = {229--238},
month = dec
}
@article{Boyko:2009ds,
author = {Boyko, Ryan H and Marshall, andrew J},
title = {{The willing cuckold: optimal paternity allocation, infanticide and male reproductive strategies in mammals}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {6},
pages = {1397--1407},
month = jun
}
@article{Guss:2011ft,
author = {Guss, Adam M and Guss, Adam M and Roeselers, Guus and Roeselers, Guus and Newton, Irene L G and Newton, Irene L G and Young, C Robert and Young, C Robert and Klepac-Ceraj, Vanja and Lory, Stephen and Lory, Stephen and Cavanaugh, Colleen M and Cavanaugh, Colleen M},
title = {{Phylogenetic and metabolic diversity of bacteria associated with cystic fibrosis.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {1},
pages = {20--29},
month = jan
}
@article{AUDZIJONYTE:2012dv,
author = {AUDZIJONYTE, ASTA and PAHLBERG, JOHAN and VILJANEN, MARTTA and DONNER, KRISTIAN and V{\"A}IN{\"O}L{\"A}, RISTO},
title = {{Opsin gene sequence variation across phylogenetic and population histories in Mysis (Crustacea: Mysida) does not match current light environments or visual-pigment absorbance spectra}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = mar
}
@article{Eldridge:2009cg,
author = {Eldridge, David J and Whitford, Walter G and Duval, Benjamin D},
title = {{Animal disturbances promote shrub maintenance in a desertified grassland}},
journal = {Journal of Ecology},
year = {2009},
volume = {97},
number = {6},
pages = {1302--1310},
month = nov
}
@article{Rabosky:2009eh,
author = {Rabosky, Daniel L and McCune, Amy R},
title = {{Reinventing species selection with molecular phylogenies}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {2},
pages = {68--74},
month = feb
}
@article{Tregenza:2002wc,
author = {Tregenza, T and Wedell, N},
title = {{Polyandrous females avoid costs of inbreeding}},
journal = {Nature},
year = {2002},
volume = {415},
number = {6867},
pages = {71--73}
}
@article{Johns:2009bb,
author = {Johns, P M and Howard, K J and Breisch, N L and Rivera, A and Thorne, B L},
title = {{Nonrelatives inherit colony resources in a primitive termite}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {41},
pages = {17452--17456},
month = oct
}
@article{Palstra:2008if,
author = {Palstra, Friso P and Ruzzante, Daniel E},
title = {{Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence?}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {15},
pages = {3428--3447},
month = aug
}
@article{Reudink:2009eg,
author = {Reudink, Matthew W and Marra, Peter P and Boag, Peter T and Ratcliffe, Laurene M},
title = {{Plumage coloration predicts paternity and polygyny in the American redstart}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {495--501},
month = feb
}
@article{Heimeier:2002vn,
author = {Heimeier, R A and Davis, B J and Donald, J A},
title = {{The effect of water deprivation on the expression of atrial natriuretic peptide and its receptors in the spinifex hopping mouse, \textit{Notomys alexis}}},
journal = {Comparative Biochemistry and Physiology Part A: Physiology},
year = {2002},
volume = {132},
number = {4},
pages = {893--903}
}
@article{Nagy:2007jx,
author = {Nagy, M and Heckel, G and Voigt, C C and Mayer, F},
title = {{Female-biased dispersal and patrilocal kin groups in a mammal with resource-defence polygyny}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1628},
pages = {3019--3025},
month = dec
}
@article{PALOMBIT:1994vj,
author = {PALOMBIT, RA},
title = {{EXTRA-PAIR COPULATIONS IN A MONOGAMOUS APE}},
journal = {Animal Behaviour},
year = {1994},
volume = {47},
number = {3},
pages = {721--723}
}
@article{Drew:2007hd,
author = {Drew, C J G and Kyd, R J and Morton, A J},
title = {{Complexin 1 knockout mice exhibit marked deficits in social behaviours but appear to be cognitively normal}},
journal = {Human Molecular Genetics},
year = {2007},
volume = {16},
number = {19},
pages = {2288--2305},
month = jul
}
@article{CalduchGiner:2013hy,
author = {Calduch-Giner, Josep A and Calduch-Giner, Josep A and Bermejo-Nogales, Azucena and Bermejo-Nogales, Azucena and Benedito-Palos, Laura and Benedito-Palos, Laura and Estensoro, Itziar and Estensoro, Itziar and Ballester-Lozano, Gabriel and Ballester-Lozano, Gabriel and Sitj{\`a}-Bobadilla, Ariadna and Sitj{\`a}-Bobadilla, Ariadna and P{\'e}rez-S{\'a}nchez, Jaume and P{\'e}rez-S{\'a}nchez, Jaume},
title = {{Deep sequencing for \textit{de novo} construction of a marine fish (Sparus aurata) transcriptome database with a large coverage of protein-coding transcripts}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {178}
}
@article{Need:2009kx,
author = {Need, Anna C and Goldstein, David B},
title = {{Next generation disparities in human genomics: concerns and remedies}},
journal = {Trends In Genetics},
year = {2009},
volume = {25},
number = {11},
pages = {489--494},
month = nov
}
@article{Nettle:2011gn,
author = {Nettle, Daniel and Coall, David A and Dickins, Thomas E},
title = {{Early-life conditions and age at first pregnancy in British women.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
volume = {278},
number = {1712},
pages = {1721--1727},
month = jun
}
@article{Lukas:2012dw,
author = {Lukas, Dieter and Lukas, Dieter and Clutton-Brock, TH},
title = {{Cooperative breeding and monogamy in mammalian societies.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1736},
pages = {2151--2156},
month = jun
}
@article{Oosterhout:2009jq,
author = {van Oosterhout, C},
title = {{Transposons in the MHC: the Yin and Yang of the vertebrate immune system}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {3},
pages = {190--191},
month = apr
}
@article{Freckleton:2009bm,
author = {Freckleton, R P},
title = {{The seven deadly sins of comparative analysis}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {7},
pages = {1367--1375},
month = jul
}
@article{Chakrabarti:2010fe,
author = {Chakrabarti, Saikat and Lanczycki, Christopher J and Panchenko, Anna R and Przytycka, Teresa M and Thiessen, Paul A and Bryant, Stephen H},
title = {{State of the art: refinement of multiple sequence alignments}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {3}
}
@article{Reichard:2012ji,
author = {Reichard, Martin and Spence, Rowena and Bryjov{\'a}, Anna and Bryja, Josef and Smith, Carl},
title = {{Female Rose Bitterling Prefer MHC-Dissimilar Males: Experimental Evidence}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e40780},
month = jul
}
@article{DANIELS:1983ul,
author = {DANIELS, D},
title = {{THE EVOLUTION OF CONCEALED OVULATION AND SELF-DECEPTION}},
journal = {Ethology and Sociobiology},
year = {1983},
volume = {4},
number = {2},
pages = {69--87}
}
@article{Thomson:2010jh,
author = {Thomson, Robert C and Wang, Ian J and Johnson, Jarrett R},
title = {{Genome-enabled development of DNA markers for ecology, evolution and conservation.}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {11},
pages = {2184--2195},
month = jun
}
@article{Casola:2009fv,
author = {Casola, Claudio and Hahn, Matthew W},
title = {{Gene Conversion Among Paralogs Results in Moderate False Detection of Positive Selection Using Likelihood Methods}},
journal = {Journal of Molecular Evolution},
year = {2009},
volume = {68},
number = {6},
pages = {679--687},
month = may
}
@article{Padian:1997vk,
author = {Padian, NS and Shiboski, SC and Glass, SO and Vittinghoff, E},
title = {{Heterosexual transmission of human immunodeficiency virus (HIV) in Northern California: Results from a ten-year study}},
journal = {American Journal of Epidemiology},
year = {1997},
volume = {146},
number = {4},
pages = {350--357}
}
@article{Davidson:2001wr,
author = {Davidson, DL and Morris, DW},
title = {{Density-dependent foraging effort of Deer Mice (\textit{Peromyscus} \textit{maniculatus})}},
journal = {Functional Ecology},
year = {2001},
volume = {15},
number = {5},
pages = {575--583}
}
@article{Rosenblum:2009ih,
author = {Rosenblum, Erica Bree and R{\"o}mpler, Holger and Sch{\"o}neberg, Torsten and Hoekstra, Hopi E},
title = {{Molecular and functional basis of phenotypic convergence in white lizards at White Sands.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {5},
pages = {2113--2117},
month = feb
}
@article{Gandon:2009hs,
author = {Gandon, Sylvain and Day, Troy},
title = {{EVOLUTIONARY EPIDEMIOLOGY AND THE DYNAMICS OF ADAPTATION}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {4},
pages = {826--838},
month = apr
}
@article{BURLEY:1981vn,
author = {BURLEY, N},
title = {{MATE CHOICE BY MULTIPLE CRITERIA IN A MONOGAMOUS SPECIES}},
journal = {The American Naturalist},
year = {1981},
volume = {117},
number = {4},
pages = {515--528}
}
@article{Sakib:2011cw,
author = {Sakib, Muhammad Nazmus and Sakib, Muhammad Nazmus and Tang, Jijun and Tang, Jijun and Zheng, W Jim and Zheng, W Jim and Huang, Chin-Tser and Huang, Chin-Tser},
title = {{Improving Transmission Efficiency of Large Sequence Alignment/Map (SAM) Files}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {12},
pages = {e28251},
month = dec
}
@article{Nunn:1999vk,
author = {Nunn, CL},
title = {{The evolution of exaggerated sexual swellings in primates and the graded-signal hypothesis}},
journal = {Animal Behaviour},
year = {1999},
volume = {58},
pages = {229--246}
}
@article{Yue:2010db,
author = {Yue, Gen Hua and Chang, Alex},
title = {{Molecular Evidence for High Frequency of Multiple Paternity in a Freshwater Shrimp Species Caridina ensifera}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {9},
pages = {e12721},
month = sep
}
@article{Gjini:2012cp,
author = {Gjini, E and Gjini, E and Haydon, D T and Haydon, D T and Barry, J D and Barry, J D and Cobbold, C A and Cobbold, C A},
title = {{Linking the antigen archive structure to pathogen fitness in African trypanosomes}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1753},
pages = {20122129--20122129},
month = dec
}
@article{Flintoft:2011ej,
author = {Flintoft, Louisa},
title = {{Getting RNAi therapies to the brain.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {5},
pages = {296},
month = may
}
@article{Langfelder:2008bda,
author = {Langfelder, Peter and Horvath, Steve},
title = {{WGCNA: an R package for weighted correlation network analysis}},
journal = {BMC Bioinformatics},
year = {2008},
volume = {9},
number = {1},
pages = {559}
}
@article{Anonymous:36epHzBt,
title = {{002964.full}},
year = {2014},
pages = {1--41},
month = feb
}
@article{Mazer:2001cp,
author = {Mazer, Cynthia L and Appel, Arthur G},
title = {{Water Loss and Desiccation Tolerances of Longwing Butterflies(Lepidoptera: Nymphalidae)}},
journal = {Environmental Entomology},
year = {2001},
volume = {30},
number = {4},
pages = {631--636},
month = aug
}
@article{BarraudLange:2007gd,
author = {Barraud-Lange, Virginie and Naud-Barriant, Nathalie and Saffar, Line and Gattegno, Liliane and Ducot, Beatrice and Drillet, Anne-Sophie and Bomsel, Morgane and Wolf, Jean-Philippe and Ziyyat, Ahmed},
title = {{Alpha6beta1 integrin expressed by sperm is determinant in mouse fertilization}},
journal = {BMC Developmental Biology},
year = {2007},
volume = {7},
number = {1},
pages = {102}
}
@article{Coates:2009jp,
author = {Coates, B S and Sumerford, D V and Miller, N J and Kim, K S and Sappington, T W and Siegfried, B D and Lewis, L C},
title = {{Comparative Performance of Single Nucleotide Polymorphism and Microsatellite Markers for Population Genetic Analysis}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {5},
pages = {556--564},
month = aug
}
@article{Zerbino:2008bm,
author = {Zerbino, D R and Birney, E},
title = {{Velvet: Algorithms for \textit{de novo} short read assembly using \textit{de Bruijn} graphs}},
journal = {Genome Research},
year = {2008},
volume = {18},
number = {5},
pages = {821--829},
month = feb
}
@article{Bashir:2008gt,
author = {Bashir, Ali and Volik, Stanislav and Collins, Colin and Bafna, Vineet and Raphael, Benjamin J},
title = {{Evaluation of Paired-End Sequencing Strategies for Detection of Genome Rearrangements in Cancer}},
journal = {PLOS Computational Biology},
year = {2008},
volume = {4},
number = {4},
pages = {e1000051},
month = apr
}
@article{Gray:1996tv,
author = {Gray, EM},
title = {{Female control of offspring paternity in a western population of red-winged blackbirds (\textit{Agelaius phoeniceus})}},
journal = {Behavioral Ecology and Sociobiology},
year = {1996},
volume = {38},
number = {4},
pages = {267--278}
}
@article{Kosiol:2008ho,
author = {Kosiol, Carolin and Vinar, Tom{\'a}s and Da Fonseca, Rute R and Hubisz, Melissa J and Bustamante, Carlos D and Nielsen, Rasmus and Siepel, Adam},
title = {{Patterns of positive selection in six Mammalian genomes.}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {8},
pages = {e1000144}
}
@article{Teets:2012gt,
author = {Teets, Nicholas M and Peyton, Justin T and Colinet, Herve and Renault, David and Kelley, Joanna L and Kawarasaki, Yuta and Lee, Richard E and Denlinger, David L},
title = {{Gene expression changes governing extreme dehydration tolerance in an Antarctic insect.}},
journal = {PNAS},
year = {2012},
volume = {109},
number = {50},
pages = {20744--20749},
month = dec
}
@article{Alexander:2009bz,
author = {Alexander, D H and Novembre, J and Lange, K},
title = {{Fast model-based estimation of ancestry in unrelated individuals}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {9},
pages = {1655--1664},
month = sep
}
@article{Feder:2003dy,
author = {Feder, Martin E and Feder, Martin E and Mitchell-Olds, Thomas and Mitchell-Olds, Thomas},
title = {{Evolutionary and ecological functional genomics.}},
journal = {Nature Reviews Genetics},
year = {2003},
volume = {4},
number = {8},
pages = {651--657},
month = aug
}
@article{EBERHARD:2000th,
author = {EBERHARD, WG},
title = {{Criteria for demonstrating postcopulatory female choice}},
journal = {Evolution},
year = {2000},
volume = {54},
number = {3},
pages = {1047--1050}
}
@article{Kalinowski:2006dh,
author = {Kalinowski, Steven T and Wagner, Aaron P and Taper, Mark L},
title = {{ml-relate: a computer program for maximum likelihood estimation of relatedness and relationship}},
journal = {Molecular Ecology Notes},
year = {2006},
volume = {6},
number = {2},
pages = {576--579},
month = jun
}
@article{Steppan:2005jh,
author = {Steppan, Scott J and Adkins, R M and Spinks, P Q and Hale, C},
title = {{Multigene phylogeny of the Old World mice, Murinae, reveals distinct geographic lineages and the declining utility of mitochondrial genes compared to nuclear genes}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2005},
volume = {37},
number = {2},
pages = {370--388},
month = nov
}
@article{Anonymous:sAvyNwEN,
title = {{Untitled}},
year = {2014},
pages = {1--17},
month = may
}
@article{CluttonBrock:2010de,
author = {Clutton Brock, Tim H and Hodge, Sarah J and Flower, Tom P and Spong, Goran F and Young, andrew J},
title = {{Adaptive Suppression of Subordinate Reproduction in Cooperative Mammals}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {5},
pages = {664--673},
month = nov
}
@article{Tallmon:2010kn,
author = {Tallmon, David A and Gregovich, Dave and Waples, Robin S and Scott Baker, C and Jackson, Jennifer and Taylor, Barbara L and Archer, Eric and Martien, Karen K and Allendorf, Fred W and Schwartz, Michael K},
title = {{When are genetic methods useful for estimating contemporary abundance and detecting population trends?}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {4},
pages = {684--692},
month = feb
}
@article{Miczek:2002ex,
author = {Miczek, Klaus A and Fish, Eric W and de Bold, Joseph F and de Almeida, Rosa M},
title = {{Social and neural determinants of aggressive behavior: pharmacotherapeutic targets at serotonin, dopamine and ?-aminobutyric acid systems}},
journal = {Psychopharmacology},
year = {2002},
volume = {163},
number = {3-4},
pages = {434--458},
month = oct
}
@article{Palm:2011hz,
author = {Palm, F and Nordquist, L},
title = {{Renal oxidative stress, oxygenation, and hypertension}},
journal = {AJP: Regulatory, Integrative and Comparative Physiology},
year = {2011},
volume = {301},
number = {5},
pages = {R1229--R1241},
month = nov
}
@article{Bolhuis:2011vx,
author = {Bolhuis, JJ and Brown, GR and Richardson, RC},
title = {{Darwin in Mind: New Opportunities for Evolutionary Psychology}},
journal = {PLOS Biology},
year = {2011}
}
@article{Biswas:2013ub,
author = {Biswas, Surojit and Agrawal, Yash N and Mucyn, Tatiana S and Dangl, Jeffery L and Jones, Corbin D},
title = {{Biological Averaging in RNA-Seq}},
journal = {arXiv.org},
year = {2013},
eprint = {1309.0670v2},
eprinttype = {arxiv},
eprintclass = {q-bio.QM},
month = sep
}
@article{KosakovskyPond:2006hm,
author = {Kosakovsky Pond, Sergei L and Frost, Simon D W and Grossman, Zehava and Gravenor, Michael B and Richman, Douglas D and Brown, andrew J Leigh},
title = {{Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses}},
journal = {PLOS Computational Biology},
year = {2006},
volume = {2},
number = {6},
pages = {e62}
}
@article{PARKER:1990ve,
author = {Parker, GA},
title = {{SPERM COMPETITION GAMES - SNEAKS AND EXTRA-PAIR COPULATIONS}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1990},
volume = {242},
number = {1304},
pages = {127--133}
}
@article{Milinkovitch:2010dk,
author = {Milinkovitch, Michel C and Helaers, Raphael and Depiereux, Eric and Tzika, Athanasia C and Gabaldon, Toni},
title = {{2{\texttimes} genomes - depth does matter}},
journal = {Genome Biology},
year = {2010},
volume = {11},
number = {2},
pages = {R16}
}
@article{AmbionInc:2003vi,
author = {{Ambion Inc.}},
title = {{TURBO DNA-free{\texttrademark} Kit}},
year = {2003},
pages = {1--12},
month = apr
}
@article{GarciaNavas:2009fs,
author = {Garcia-Navas, V and Ortego, J and Sanz, J J},
title = {{Heterozygosity-based assortative mating in blue tits (Cyanistes caeruleus): implications for the evolution of mate choice}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1669},
pages = {2931--2940},
month = jul
}
@article{Rapaport:2013bn,
author = {Rapaport, Franck and Rapaport, Franck and Khanin, Raya and Khanin, Raya and Liang, Yupu and Liang, Yupu and Pirun, Mono and Pirun, Mono and Krek, Azra and Krek, Azra and Zumbo, Paul and Mason, Christopher E and Socci, Nicholas D and Betel, Doron and Betel, Doron},
title = {{Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {9},
pages = {R95}
}
@article{Heckel:2008wg,
author = {Heckel, Gerald and Fink, Sabrine},
title = {{Evolution of the arginine vasopressin 1a receptor and implications for mammalian social behaviour}},
journal = {Progress in Brain Research},
year = {2008},
volume = {170},
pages = {321--330}
}
@article{Krasnov:2005jp,
author = {Krasnov, Boris R and Morand, Serge and Hawlena, Hadas and Khokhlova, Irina S and Shenbrot, Georgy I},
title = {{Sex-biased parasitism, seasonality and sexual size dimorphism in desert rodents}},
journal = {Oecologia},
year = {2005},
volume = {146},
number = {2},
pages = {209--217},
month = jul
}
@article{Lim:2013ei,
author = {Lim, Audrey and Lim, Audrey and Kumar, Vineet and Kumar, Vineet and Hari Dass, Shantala A and Hari Dass, Shantala A and Vyas, Ajai and Vyas, Ajai},
title = {{Toxoplasma gondii infection enhances testicular steroidogenesis in rats.}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {1},
pages = {102--110},
month = jan
}
@article{Chang:2011ci,
author = {Chang, Ti-Cheng and Yang, Yang and Yasue, Hiroshi and Yasue, Hiroshi and Bharti, Arvind K. and Bharti, Arvind K. and Retzel, Ernest F. and Retzel, Ernest F. and Liu, Wan-Sheng},
title = {{The Expansion of the PRAME Gene Family in Eutheria}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {2}
}
@article{Westneat:2000tg,
author = {Westneat, DF and Rambo, TB},
title = {{Copulation exposes female Red-winged Blackbirds to bacteria in male semen}},
journal = {Journal of Avian Biology},
year = {2000},
volume = {31},
number = {1},
pages = {1--7}
}
@article{Anonymous:GVszJGJJ,
title = {{J Anim Ecol 1982 EWALD}},
year = {2006},
pages = {23},
month = sep
}
@article{Thrall:1997ui,
author = {Thrall, PH and Antonovics, J and Bever, JD},
title = {{Sexual transmission of disease and host mating systems: within-season reproductive success}},
journal = {The American Naturalist},
year = {1997},
volume = {149},
number = {3},
pages = {485--506}
}
@article{Kulman:1965ts,
author = {Kulman, H M},
title = {{Natural Control of the Eastern Tent Caterpillar and Notes on Its Status as a Forest Pest}},
journal = {Journal of Economic Entomology},
year = {1965},
number = {5},
pages = {66--70}
}
@article{Grant:2010cj,
author = {Grant, B Rosemary and Grant, B Rosemary and Grant, Peter R and Grant, Peter R},
title = {{Songs of Darwin's finches diverge when a new species enters the community.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {47},
pages = {20156--20163},
month = nov
}
@article{Lewitter:2009de,
author = {Lewitter, Fran and Rebhan, Michael and Richter, Brent and Sexton, David},
title = {{The Need for Centralization of Computational Biology Resources}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {6},
pages = {e1000372},
month = jun
}
@article{Fossoy:2009bj,
author = {Foss{\o}y, F and Johnsen, A and Lifjeld, J T},
title = {{Cell-mediated immunity and multi-locus heterozygosity in bluethroat nestlings}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {9},
pages = {1954--1960},
month = sep
}
@article{Altschul:1990dy,
author = {Altschul, S F and Altschul, S F and Gish, W and Gish, W and Miller, W and Myers, E W and Myers, E W and Lipman, D J},
title = {{Basic local alignment search tool.}},
journal = {Journal of molecular biology},
year = {1990},
volume = {215},
number = {3},
pages = {403--410},
month = oct
}
@article{Garrison:2008jv,
author = {Garrison, S P and Jeffers, J R and Yang, C and Nilsson, J A and Hall, M A and Rehg, J E and Yue, W and Yu, J and Zhang, L and Onciu, M and Sample, J T and Cleveland, J L and Zambetti, G P},
title = {{Selection against PUMA Gene Expression in Myc-Driven B-Cell Lymphomagenesis}},
journal = {Molecular and Cellular Biology},
year = {2008},
volume = {28},
number = {17},
pages = {5391--5402},
month = aug
}
@article{Anonymous:6tnbGcd-,
title = {{QL-qq2vAZoq}}
}
@article{Cockburn:2009cv,
author = {Cockburn, andrew and Dalziell, Anastasia H and Blackmore, Caroline J and Blackmore, Caroline J and Double, Michael C and Kokko, Hanna and Osmond, Helen L and Osmond, Helen L and Beck, Nadeena R and Beck, Nadeena R and Head, Megan L and Head, Megan L and Wells, Konstans and Wells, Konstans},
title = {{Superb fairy-wren males aggregate into hidden leks to solicit extragroup fertilizations before dawn}},
journal = {Behavioral Ecology},
volume = {20},
pages = {501--510}
}
@article{Maurer:2008dr,
author = {Maurer, Golo},
title = {{Who Cares? Males Provide Most Parental Care in a Monogamous Nesting Cuckoo}},
journal = {Ethology},
year = {2008},
volume = {114},
number = {6},
pages = {540--547},
month = jun
}
@article{Miller:2010cv,
author = {Miller, Hilary C and Allendorf, Fred and Daugherty, Charles H},
title = {{Genetic diversity and differentiation at MHC genes in island populations of tuatara (Sphenodon spp.)}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {18},
pages = {3894--3908},
month = aug
}
@article{Xu:2010dr,
author = {Xu, Tian-jun and Sun, Yue-na and Wang, Ri-xin},
title = {{Gene duplication and evidence for balancing selection acting on MHC class II DAA gene of the half-smooth tongue sole (Cynoglossus semilaevis)}},
journal = {Marine Genomics},
year = {2010},
volume = {3},
number = {2},
pages = {117--123},
month = jun
}
@article{Kvarnemo:2007dj,
author = {Kvarnemo, C and Moore, G I and Jones, A G},
title = {{Sexually selected females in the monogamous Western Australian seahorse}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1609},
pages = {521--525},
month = feb
}
@article{Cho:2009gy,
author = {Cho, Byung-Kwan and Palsson, Bernhard {\O}},
title = {{Probing the basis for genotype-phenotype relationships}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {8},
pages = {565--566},
month = aug
}
@article{Brotherton:2001ve,
author = {Brotherton, PNM and Clutton-Brock, TH and O'Riain, MJ and Gaynor, D and Sharpe, L and Kansky, R and McIlrath, GM},
title = {{offspring food allocation by parents and helpers in a cooperative mammal}},
journal = {Behavioral Ecology},
year = {2001},
volume = {12},
number = {5},
pages = {590--599}
}
@article{Lee:2012bk,
author = {Lee, H and Lee, H and Schatz, M C and Schatz, M C},
title = {{Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {16},
pages = {2097--2105},
month = aug
}
@article{Anonymous:2011uz,
title = {{ANBEH-D-11-00727}},
year = {2011},
pages = {1--4},
month = sep
}
@article{Degnan:2009hr,
author = {Degnan, James H and Rosenberg, Noah A},
title = {{Gene tree discordance, phylogenetic inference and the multispecies coalescent}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {6},
pages = {332--340},
month = jun
}
@article{Pitchers:2012jo,
author = {Pitchers, William and Pitchers, William and Pool, John E and Pool, John E and Dworkin, Ian},
title = {{ALTITUDINAL CLINAL VARIATION IN WING SIZE {\&} SHAPE IN AFRICAN DROSOPHILA MELANOGASTER: ONE CLINE OR MANY?}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = aug
}
@article{Aiello:2002ib,
author = {Aiello, Leslie C and Key, Cathy},
title = {{Energetic consequences of being aHomo erectus female}},
journal = {American journal of human biology : the official journal of the Human Biology Council},
year = {2002},
volume = {14},
number = {5},
pages = {551--565},
month = aug
}
@article{Gavrilets:2012fn,
author = {Gavrilets, Sergey},
title = {{Human origins and the transition from promiscuity to pair-bonding.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {25},
pages = {9923--9928},
month = jun
}
@article{Raz:2011gy,
author = {Raz, Tal and Kapranov, Philipp and Kapranov, Philipp and Lipson, Doron and Letovsky, Stan and Letovsky, Stan and Milos, Patrice M and Thompson, John F},
title = {{Protocol Dependence of Sequencing-Based Gene Expression Measurements}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {5},
pages = {e19287},
month = may
}
@article{Feldmeyer:2013bt,
title = {{Gene expression patterns associated with caste and reproductive status in ants: worker-specific genes are more derived than queen-specific ones}},
year = {2013},
pages = {n/a--n/a},
month = aug
}
@article{Dvinge:2009hm,
author = {Dvinge, H and Bertone, P},
title = {{HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {24},
pages = {3325--3326},
month = dec
}
@article{Wittemyer:2009el,
author = {Wittemyer, G and Okello, J B A and Rasmussen, H B and Arctander, P and Nyakaana, S and Douglas-Hamilton, I and Siegismund, H R},
title = {{Where sociality and relatedness diverge: the genetic basis for hierarchical social organization in African elephants}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1672},
pages = {3513--3521},
month = aug
}
@article{Wintour:1997ts,
author = {Wintour, E M and Moritz, K M},
title = {{Comparative aspects of fetal renal development.}},
journal = {Equine veterinary journal. Supplement},
year = {1997},
number = {24},
pages = {51--58},
month = jun
}
@article{Shi:2009ge,
author = {Shi, Yi and Shi, Yi and Chen, Leiqiong and Chen, Leiqiong and Tong, Jianqian and Tong, Jianqian and Xu, Chen and Xu, Chen},
title = {{Preliminary characterization of vaginal microbiota in healthy Chinese women using cultivation-independent methods}},
journal = {Journal of Obstetrics and Gynaecology Research},
year = {2009},
volume = {35},
number = {3},
pages = {525--532},
month = jun
}
@article{Simmons:2011ju,
author = {Simmons, Leigh W and Peters, Marianne and Peters, Marianne and Rhodes, Gillian},
title = {{Low Pitched Voices Are Perceived as Masculine and Attractive but Do They Predict Semen Quality in Men?}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {12},
pages = {e29271},
month = dec
}
@article{Martinez:2009gr,
author = {Martinez, J L},
title = {{The role of natural environments in the evolution of resistance traits in pathogenic bacteria}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1667},
pages = {2521--2530},
month = jun
}
@article{Singh:2009kj,
author = {Singh, Nadia D and Larracuente, Amanda M and Sackton, Timothy B and Clark, andrew G},
title = {{Comparative Genomics on the \textit{Drosophila}Phylogenetic Tree}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2009},
volume = {40},
number = {1},
pages = {459--480},
month = dec
}
@article{Bedford:2003wa,
author = {Bedford, Jennifer J and Bedford, Jennifer J and Leader, John P and Leader, John P and Walker, Robert J and Walker, Robert J},
title = {{Aquaporin expression in normal human kidney and in renal disease.}},
journal = {Journal of the American Society of Nephrology : JASN},
year = {2003},
volume = {14},
number = {10},
pages = {2581--2587},
month = oct
}
@article{Charmantier:2006bd,
author = {Charmantier, A and Sheldon, B},
title = {{Testing genetic models of mate choice evolution in the wild}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {8},
pages = {417--419},
month = aug
}
@article{Zhang:2012ig,
author = {Zhang, Jie and Zhang, Jie and Lu, Kewei and Lu, Kewei and Xiang, Yang and Xiang, Yang and Islam, Muhtadi and Islam, Muhtadi and Kotian, Shweta and Kotian, Shweta and Kais, Zeina and Kais, Zeina and Lee, Cindy and Lee, Cindy and Arora, Mansi and Arora, Mansi and Liu, Hui-wen and Liu, Hui-wen and Parvin, Jeffrey D and Parvin, Jeffrey D and Huang, Kun and Huang, Kun},
title = {{Weighted Frequent Gene Co-expression Network Mining to Identify Genes Involved in Genome Stability}},
journal = {PLOS Computational Biology},
year = {2012},
volume = {8},
number = {8},
pages = {e1002656},
month = aug
}
@article{Widemo:2005ij,
author = {Widemo, M S},
title = {{Male but not female pipefish copy mate choice}},
journal = {Behavioral Ecology},
year = {2005},
volume = {17},
number = {2},
pages = {255--259},
month = dec
}
@article{Otto:2000vs,
author = {Otto, Sarah P},
title = {{Detecting the form of selection from DNA sequence data}},
journal = {Trends In Genetics},
year = {2000},
volume = {16},
number = {12},
pages = {526--529}
}
@article{Anonymous:Lyv6CfVN,
title = {{American Birds}},
year = {2006},
pages = {20},
month = feb
}
@article{Peng:2011et,
author = {Peng, R D},
title = {{Reproducible Research in Computational Science}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6060},
pages = {1226--1227},
month = dec
}
@article{Achaz:2009er,
author = {Achaz, G},
title = {{Frequency Spectrum Neutrality Tests: One for All and All for One}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {1},
pages = {249--258},
month = sep
}
@article{Curtis:2006kb,
author = {Curtis, J Thomas and Liu, Yan and Aragona, Brandon J and Wang, Zuoxin},
title = {{Dopamine and monogamy}},
journal = {Brain Research},
year = {2006},
volume = {1126},
number = {1},
pages = {76--90},
month = dec
}
@article{Servedio:2006tt,
author = {Servedio, M and Lande, R},
title = {{Population genetic models of male and mutual mate choice}},
journal = {Evolution},
year = {2006},
volume = {60},
number = {4},
pages = {674--685}
}
@article{Glen:2009co,
author = {Glen, Alistair S and Cardoso, Maria J and Dickman, Chris R and Firestone, Karen B},
title = {{Who's your daddy? Paternity testing reveals promiscuity and multiple paternity in the carnivorous marsupial Dasyurus maculatus (Marsupialia: Dasyuridae)}},
journal = {Biological Journal of The Linnean Society},
year = {2008},
volume = {96},
number = {1},
pages = {1--7},
month = dec
}
@article{Pop:2009dp,
author = {Pop, M},
title = {{Genome assembly reborn: recent computational challenges}},
journal = {Briefings In Bioinformatics},
year = {2009},
volume = {10},
number = {4},
pages = {354--366},
month = jun
}
@article{Crew:1994ve,
author = {Crew, MD and Douglass, CA and BRORSON, KA},
title = {{H-2T24 AND PEMAT24 - ORTHOLOGOUS EXPRESSED MHC CLASS IB GENES FROM MOUSE AND PEROMYSCUS-MANICULATUS}},
journal = {Immunogenetics},
year = {1994},
volume = {39},
number = {6},
pages = {412--417}
}
@article{Kalinowski:2007eqa,
author = {Kalinowski, Steven T and Taper, Mark L and Marshall, Tristan C},
title = {{Revising how the computer program cervus accommodates genotyping error increases success in paternity assignment}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {5},
pages = {1099--1106},
month = feb
}
@article{Hoffmann:2009hr,
author = {Hoffmann, Steve and Otto, Christian and Kurtz, Stefan and Sharma, Cynthia M and Khaitovich, Philipp and Vogel, J{\"o}rg and Stadler, Peter F and Hackerm{\"u}ller, J{\"o}rg},
title = {{Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {9},
pages = {e1000502},
month = sep
}
@article{McCormack:2013ef,
author = {McCormack, John E and McCormack, John E and Harvey, Michael G and Faircloth, Brant C and Crawford, Nicholas G and Glenn, Travis C and Brumfield, Robb T},
title = {{A Phylogeny of Birds Based on Over 1,500 Loci Collected by Target Enrichment and High-Throughput Sequencing}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {1},
pages = {e54848},
month = jan
}
@article{Wang:2009km,
author = {Wang, Ian J},
title = {{Fine-scale population structure in a desert amphibian: landscape genetics of the black toad ( Bufo exsul)}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {18},
pages = {3847--3856},
month = sep
}
@article{Behr:2013hz,
author = {Behr, Jonas and Kahles, andr{\'e} and Zhong, Yi and Sreedharan, Vipin T and Drewe, Philipp and R{\"a}tsch, Gunnar},
title = {{MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {20},
pages = {2529--2538},
month = oct
}
@article{Foley:2011kf,
author = {Foley, B. R. and Foley, B. R. and Telonis-Scott, M and Telonis-Scott, M},
title = {{Quantitative genetic analysis suggests causal association between cuticular hydrocarbon composition and desiccation survival in \textit{Drosophila} \textit{melanogaster}}},
journal = {Heredity},
year = {2011},
volume = {106},
number = {1},
pages = {68--77}
}
@article{Xu:2004vh,
author = {Xu, HY and Fu, YX},
title = {{Estimating effective population size or mutation rate with microsatellites}},
journal = {Genetics},
year = {2004},
volume = {166},
number = {1},
pages = {555--563}
}
@article{Bonizzoni:2006ua,
author = {Bonizzoni, Mariangela and Gomulski, Ludvik M and Gomulski, Ludvik M and Mossinson, Sigalit and Mossinson, Sigalit and Guglielmino, Carmela R and Guglielmino, Carmela R and Malacrida, Anna R and Malacrida, Anna R and Yuval, Boaz and Yuval, Boaz and Gasperi, Giuliano and Gasperi, Giuliano},
title = {{Is polyandry a common event among wild populations of the pest Ceratitis capitata?}},
journal = {Journal of Economic Entomology},
year = {2006},
volume = {99},
number = {4},
pages = {1420--1429}
}
@article{Wenink:1998ud,
author = {Wenink, PW and Groen, AF and Roelke-Parker, ME and Prins, HHT},
title = {{African buffalo maintain high genetic diversity in the major histocompatibility complex in spite of historically known population bottlenecks}},
journal = {Molecular Ecology},
year = {1998},
volume = {7},
number = {10},
pages = {1315--1322}
}
@article{RANDALL:1993vo,
author = {RANDALL, JA},
title = {{BEHAVIORAL ADAPTATIONS OF DESERT RODENTS (HETEROMYIDAE)}},
journal = {Animal Behaviour},
year = {1993},
volume = {45},
number = {2},
pages = {263--287}
}
@article{Lee:2011fq,
author = {Lee, Hae-Lim and Lee, Hae-Lim and Irish, Vivian F. and Irish, Vivian F.},
title = {{Gene Duplication and Loss in a MADS Box Gene Transcription Factor Circuit}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {12},
pages = {3367--3380}
}
@article{AnkerNilssen:2008vg,
author = {Anker-Nilssen, Tycho and Kleven, Oddmund and Aarvak, Tomas and Lifjeld, Jan T},
title = {{No evidence of extra-pair paternity in the Atlantic Puffin Fratercula arctica}},
journal = {Ibis},
year = {2008},
volume = {150},
number = {3},
pages = {619--622}
}
@article{Bonduriansky:2001vo,
author = {Bonduriansky, R},
title = {{The evolution of male mate choice in insects: a synthesis of ideas and evidence}},
journal = {Biological Reviews},
year = {2001},
volume = {76},
number = {3},
pages = {305--339}
}
@article{Uller:2008csa,
author = {Uller, Tobias and Olsson, Mats},
title = {{Multiple paternity in reptiles: patterns and processes}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {11},
pages = {2566--2580},
month = apr
}
@article{Sena:2003wr,
author = {Sena, L and Sena, L and Schneider, MPC and Schneider, MPC and Brenig, B and Honeycutt, RL and Womack, JE and Womack, JE and Skow, LC and Skow, LC},
title = {{Polymorphisms in MHC-DRA and -DRB alleles of water buffalo (Bubalus bubalis) reveal different features from cattle DR alleles}},
journal = {Animal Genetics},
year = {2003},
volume = {34},
number = {1},
pages = {1--10}
}
@article{Yap:2009dh,
author = {Yap, V B and Lindsay, H and Easteal, S and Huttley, G},
title = {{Estimates of the Effect of Natural Selection on Protein-Coding Content}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {3},
pages = {726--734},
month = feb
}
@article{Cohn:2006vo,
author = {Cohn, EF and Cohn, EF and Nathan, C and Nathan, C and Radzioch, D and Radzioch, D and Yu, HW and Yu, HW and Xiang, ZY and Ding, AH and Ding, AH},
title = {{Abrupt expression of TLR4 in TLR4-deficient macrophages imposes a selective disadvantage: Genetic evidence for TLTR4-dependent responses to endogenous, nonmicrobial stimuli}},
journal = {Journal of Immunology},
year = {2006},
volume = {176},
number = {2},
pages = {1185--1194}
}
@article{Dibattista:2008to,
author = {Dibattista, Joseph D and Feldheim, Kevin A and Gruber, Samuel H and Hendry, andrew P},
title = {{Are indirect genetic benefits associated with polyandry? Testing predictions in a natural population of lemon sharks}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {3},
pages = {783--795}
}
@article{AlHashimi:2009he,
author = {Al-Hashimi, Nawfal and Sire, Jean-Yves and Delgado, Sidney},
title = {{Evolutionary Analysis of Mammalian Enamelin, The Largest Enamel Protein, Supports a Crucial Role for the 32-kDa Peptide and Reveals Selective Adaptation in Rodents and Primates}},
journal = {Journal of Molecular Evolution},
year = {2009},
volume = {69},
number = {6},
pages = {635--656},
month = nov
}
@article{Bonds:2005wn,
author = {Bonds, MH and Keenan, DC and Leidner, AJ and Rohani, P},
title = {{Higher disease prevalence can induce greater sociality: A game theoretic coevolutionary model}},
journal = {Evolution},
year = {2005},
volume = {59},
number = {9},
pages = {1859--1866}
}
@article{DaLage:1989te,
author = {Da Lage, JL and Da Lage, JL and Capy, P and Capy, P},
title = {{ScienceDirect.com - Journal of Insect Physiology - Starvation and desiccation tolerance in \textit{Drosophila} \textit{melanogaster} adults: Effects of environmental temperature}},
journal = {Journal of Insect Physiology},
year = {1989}
}
@article{Wiebe:2008ga,
author = {Wiebe, K L and Kempenaers, B},
title = {{The social and genetic mating system in flickers linked to partially reversed sex roles}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {2},
pages = {453--458},
month = mar
}
@inproceedings{Rubinstein:2013hs,
author = {Rubinstein, C D and Wolfner, M F},
title = {{\textit{Drosophila} seminal protein ovulin mediates ovulation through female octopamine neuronal signaling}},
booktitle = {Proceedings of the National {\ldots}},
year = {2013}
}
@article{Barreiro:2009fu,
author = {Barreiro, Luis B and Quintana-Murci, Lluis},
title = {{From evolutionary genetics to human immunology: how selection shapes host defence genes}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {11},
number = {1},
pages = {17--30},
month = dec
}
@article{Krakauer:2005gq,
author = {Krakauer, Alan H},
title = {{Kin selection and cooperative courtship in wild turkeys}},
journal = {Nature},
year = {2005},
volume = {434},
number = {7029},
pages = {69--72},
month = mar
}
@article{Schoenrich:2008tg,
author = {Schoenrich, Guenther and Rang, andreas and Luetteke, Nina and Raftery, Martin J and Raftery, Martin J and Charbonnel, Nathalie and Charbonnel, Nathalie and Ulrich, Rainer G and Ulrich, Rainer G},
title = {{Hantavirus-induced immunity in rodent reservoirs and humans}},
journal = {Immunological Reviews},
year = {2008},
volume = {225},
pages = {163--189}
}
@article{Shuker:2010ha,
author = {Shuker, David M},
title = {{Sexual selection: endless forms or tangled bank?}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {3},
pages = {e11--e17},
month = mar
}
@article{Zube:2008hp,
author = {Zube, Christina and R{\"o}ssler, Wolfgang},
title = {{Caste- and sex-specific adaptations within the olfactory pathway in the brain of the ant Camponotus floridanus}},
journal = {Arthropod Structure {\&} Development},
year = {2008},
volume = {37},
number = {6},
pages = {469--479},
month = nov
}
@article{SCHNEIDER:1991vc,
author = {SCHNEIDER, S and SCHNEIDER, S and VINCEK, V and TICHY, H and FIGUEROA, F and Klein, J},
title = {{MHC CLASS-II GENES OF A MARSUPIAL, THE RED-NECKED WALLABY (MACROPUS-RUFOGRISEUS) - IDENTIFICATION OF NEW GENE FAMILIES}},
journal = {Molecular Biology and Evolution},
year = {1991},
volume = {8},
number = {6},
pages = {753--766}
}
@article{Bunge:2012fy,
author = {Bunge, John and Woodard, Linda and B{\"o}hning, Dankmar and Foster, James A and Connolly, Sean and Allen, Heather K},
title = {{Estimating population diversity with CatchAll.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {7},
pages = {1045--1047},
month = apr
}
@article{Anonymous:GYbLuDE4,
title = {{Reprod Fert Develop 2002 Tecirlioglu}},
year = {2002},
pages = {9},
month = dec
}
@article{Rohlfs:2008fk,
author = {Rohlfs, R V and Weir, B S},
title = {{Distributions of Hardy-Weinberg Equilibrium Test Statistics}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {3},
pages = {1609--1616},
month = oct
}
@article{Klemme:2006jb,
author = {Klemme, Ines and Eccard, Jana A and Yl{\"o}nen, Hannu},
title = {{Do female bank voles (Clethrionomys glareolus) mate multiply to improve on previous mates?}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {60},
number = {3},
pages = {415--421},
month = mar
}
@article{Saarinen:2010dk,
author = {Saarinen, E V and Austin, J D},
title = {{When Technology Meets Conservation: Increased Microsatellite Marker Production Using 454 Genome Sequencing on the Endangered Okaloosa Darter (Etheostoma okaloosae)}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {6},
pages = {784--788},
month = oct
}
@article{Bauer:2010ht,
author = {Bauer, A P and Leikam, D and Krinner, S and Notka, F and Ludwig, C and Langst, G and Wagner, R},
title = {{The impact of intragenic CpG content on gene expression}},
journal = {Nucleic Acids Research},
year = {2010},
volume = {38},
number = {12},
pages = {3891--3908},
month = jul
}
@article{Morris:2010fl,
author = {Morris, J A and Royall, J J and Bertagnolli, D and Boe, A F and Burnell, J J and Byrnes, E J and Copeland, C and Desta, T and Fischer, S R and Goldy, J and Glattfelder, K J and Kidney, J M and Lemon, T and Orta, G J and Parry, S E and Pathak, S D and Pearson, O C and Reding, M and Shapouri, S and Smith, K A and Soden, C and Solan, B M and Weller, J and Takahashi, J S and Overly, C C and Lein, E S and Hawrylycz, M J and Hohmann, J G and Jones, A R},
title = {{Divergent and nonuniform gene expression patterns in mouse brain}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {44},
pages = {19049--19054},
month = nov
}
@article{Wang:2011iz,
author = {Wang, Ying and Wang, Ying and Mehta, Gaurang and Mehta, Gaurang and Mayani, Rajiv and Mayani, Rajiv and Lu, Jingxi and Lu, Jingxi and Souaiaia, Tade and Souaiaia, Tade and Chen, Yangho and Chen, Yangho and Clark, andrew and Clark, andrew and Yoon, Hee Jae and Yoon, Hee Jae and Wan, Lin and Wan, Lin and Evgrafov, Oleg V and Evgrafov, Oleg V and Knowles, James A and Knowles, James A and Deelman, Ewa and Deelman, Ewa and Chen, Ting},
title = {{RseqFlow: Workflows for RNA-Seq data analysis.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
month = jul
}
@article{Schwartz:1998bz,
author = {Schwartz, Michael K and Tallmon, David A and Luikart, Gordon},
title = {{Review of DNA-based census and effective population size estimators}},
journal = {Animal Conservation},
year = {1998},
volume = {1},
number = {4},
pages = {293--299},
month = nov
}
@inproceedings{Reznick:2005te,
author = {Reznick, DN and Ghalambor, CK},
title = {{Selection in nature: Experimental manipulations of natural populations}},
booktitle = {Integrative and Comparative Biology},
year = {2005},
pages = {456--462},
organization = {Univ Calif Riverside, Dept Biol, Riverside, CA 92521 USA}
}
@article{McNab:1968th,
author = {McNab, B K},
title = {{The influence of fat deposits on the basal rate of metabolism in desert homoiotherms}},
journal = {Comparative Biochemistry and Physiology},
year = {1968},
volume = {26},
number = {1},
pages = {337--343},
month = jul
}
@article{Storz:2009kh,
author = {Storz, J F and Runck, A M and Sabatino, S J and Kelly, J K and Ferrand, N and Moriyama, H and Weber, R E and Fago, A},
title = {{Evolutionary and functional insights into the mechanism underlying high-altitude adaptation of deer mouse hemoglobin}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {34},
pages = {14450--14455},
month = aug
}
@article{Lacey:1997vs,
author = {Lacey, EA and Wieczorek, JR and Tucker, PK and Tucker, PK},
title = {{Male mating behaviour and patterns of sperm precedence in Arctic ground squirrels}},
journal = {Animal Behaviour},
year = {1997},
volume = {53},
pages = {767--779}
}
@article{Martin:2007cp,
author = {Coulson, Graeme and Handasyde, Kathrine and Martin, Jennifer and Taylor, andrea},
title = {{Long-term pair-bonds without mating fidelity in a mammal}},
journal = {Behaviour},
year = {2007},
volume = {144},
number = {11},
pages = {1419--1445},
month = nov
}
@article{Clarke:1970vl,
author = {Clarke, B and Clarke, B},
title = {{Selective constraints on amino-acid substitutions during the evolution of proteins.}},
journal = {Nature},
year = {1970},
volume = {228},
number = {5267},
pages = {159--160},
month = oct
}
@article{Alcaide:2010el,
author = {Alcaide, Miguel and Lemus, Jes{\'u}s A and Blanco, Guillermo and Tella, Jos{\'e} L and Serrano, David and Negro, Juan J and Rodr{\'\i}guez, Airam and Garc{\'\i}a-Montijano, Marino},
title = {{MHC diversity and differential exposure to pathogens in kestrels (Aves: Falconidae).}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {4},
pages = {691--705},
month = feb
}
@article{Baker:2012ki,
author = {Baker, Monya and Baker, Monya},
title = {{Ben Langmead}},
journal = {Nature Methods},
year = {2012},
volume = {9},
number = {4},
pages = {313--313},
month = apr
}
@article{Patrick:2012bw,
author = {Patrick, S C and Patrick, S C and Chapman, J R and Chapman, J R and Dugdale, H L and Dugdale, H L and Quinn, J L and Quinn, J L and Sheldon, B C and Sheldon, B C},
title = {{Promiscuity, paternity and personality in the great tit}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1734},
pages = {1724--1730},
month = mar
}
@article{Pitra:2000vr,
author = {Pitra, C and Lieckfeldt, D and Alonso, JC},
title = {{Population subdivision in Europe's great bustard inferred from mitochondrial and nuclear DNA sequence variation}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {8},
pages = {1165--1170}
}
@article{Zingg:1986vb,
author = {Zingg, H H and Lefebvre, D and Almazan, G},
title = {{Regulation of vasopressin gene expression in rat hypothalamic neurons. Response to osmotic stimulation.}},
journal = {Journal of Biological Chemistry},
year = {1986},
volume = {261},
number = {28},
pages = {12956--12959},
month = oct
}
@article{SchmidtNielsen:1957we,
author = {Schmidt-Nielsen, B and Schmidt-Nielsen, K and Houpt, TR and Houpt, TR and Jarnum, SA and Jarnum, SA},
title = {{Urea Excretion in the Camel}},
journal = {American Journal of Physiology},
year = {1957},
volume = {188},
number = {3},
pages = {477--484}
}
@article{Lawrie:2013fm,
author = {Lawrie, David S and Messer, Philipp W and Hershberg, Ruth and Petrov, Dmitri A},
title = {{Strong Purifying Selection at Synonymous Sites in D. \textit{melanogaster}}},
journal = {PLOS Genetics},
year = {2013},
volume = {9},
number = {5},
pages = {e1003527},
month = may
}
@article{Assentoft:2013if,
author = {Assentoft, Mette and Kaptan, Shreyas and Fenton, Robert A and Hua, Susan Z and de Groot, Bert L and MacAulay, Nanna},
title = {{Phosphorylation of rat aquaporin-4 at Ser 111is not required for channel gating}},
journal = {Glia},
year = {2013},
volume = {61},
number = {7},
pages = {1101--1112},
month = apr
}
@article{Wall:2009gc,
author = {Wall, P Kerr and Leebens-Mack, Jim and Chanderbali, andr{\'e} S and Barakat, Abdelali and Wolcott, Erik and Liang, Haiying and Landherr, Lena and Tomsho, Lynn P and HU, YI and Carlson, John E and Ma, Hong and Schuster, Stephan C and Soltis, Douglas E and Soltis, Pamela S and Altman, Naomi and dePamphilis, Claude W},
title = {{Comparison of next generation sequencing technologies for transcriptome characterization}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {347}
}
@article{Teschke:2008db,
author = {Teschke, M and Mukabayire, O and Wiehe, T and Tautz, D},
title = {{Identification of Selective Sweeps in Closely Related Populations of the House Mouse Based on Microsatellite Scans}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {3},
pages = {1537--1545},
month = oct
}
@article{Josephson:2002cq,
author = {Josephson, Steven C},
title = {{Does polygyny reduce fertility?}},
journal = {American journal of human biology : the official journal of the Human Biology Council},
year = {2002},
volume = {14},
number = {2},
pages = {222--232},
month = feb
}
@article{Roland:1993wf,
author = {Roland, Jens},
title = {{Large-scale forest fragmentation increases the duration of tent caterpillar outbreak}},
journal = {Oecologia},
year = {1993},
volume = {93},
number = {1},
pages = {25--30}
}
@article{Nikolaev:2009hq,
author = {Nikolaev, Sergey I and Iseli, Christian and Sharp, andrew J and Robyr, Daniel and Rougemont, Jacques and Gehrig, Corinne and Farinelli, Laurent and Antonarakis, Stylianos E},
title = {{Detection of Genomic Variation by Selection of a 9 Mb DNA Region and High Throughput Sequencing}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6659},
month = aug
}
@article{Pelaseyed:2011fy,
author = {Pelaseyed, Thaher and Pelaseyed, Thaher and Hansson, Gunnar C and Hansson, Gunnar C},
title = {{CFTR anion channel modulates expression of human transmembrane mucin MUC3 through the PDZ protein GOPC.}},
journal = {Journal of cell science},
year = {2011},
volume = {124},
number = {Pt 18},
pages = {3074--3083},
month = sep
}
@article{Chong:2012fa,
author = {Chong, Rebecca A and Mueller, Rachel Lockridge and Mueller, Rachel Lockridge},
title = {{LOW METABOLIC RATES IN SALAMANDERS ARE CORRELATED WITH WEAK SELECTIVE CONSTRAINTS ON MITOCHONDRIAL GENES}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = oct
}
@article{Marco:2010br,
author = {Marco, Maria L and Marco, Maria L and de Vries, Maaike C and de Vries, Maaike C and Wels, Michiel and Wels, Michiel and Molenaar, Douwe and Molenaar, Douwe and Mangell, Peter and Mangell, Peter and Ahrne, Siv and Ahrne, Siv and de Vos, Willem M and de Vos, Willem M and Vaughan, Elaine E and Vaughan, Elaine E and Kleerebezem, Michiel and Kleerebezem, Michiel},
title = {{Convergence in probiotic Lactobacillus gut-adaptive responses in humans and mice.}},
journal = {The ISME Journal},
year = {2010},
volume = {4},
number = {11},
pages = {1481--1484},
month = nov
}
@article{Garner:2009go,
author = {Garner, S R and Bortoluzzi, R N and Heath, D D and Neff, B D},
title = {{Sexual conflict inhibits female mate choice for major histocompatibility complex dissimilarity in Chinook salmon}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1683},
pages = {885--894},
month = feb
}
@article{Schuster:2010go,
author = {Schuster, Stephan C and Miller, Webb and Ratan, Aakrosh and Tomsho, Lynn P and Giardine, Belinda and Kasson, Lindsay R and Harris, Robert S and Petersen, Desiree C and Zhao, Fangqing and Qi, Ji and Alkan, Can and Kidd, Jeffrey M and Sun, Yazhou and Drautz, Daniela I and Bouffard, Pascal and Muzny, Donna M and Reid, Jeffrey G and Nazareth, Lynne V and Wang, Qingyu and Burhans, Richard and Riemer, Cathy and Wittekindt, Nicola E and Moorjani, Priya and Tindall, Elizabeth A and Danko, Charles G and Teo, Wee Siang and Buboltz, Anne M and Zhang, Zhenhai and Ma, Qianyi and Oosthuysen, Arno and Steenkamp, Abraham W and Oostuisen, Hermann and Venter, Philippus and Gajewski, John and Zhang, Yu and Pugh, B Franklin and Makova, Kateryna D and Nekrutenko, Anton and Mardis, Elaine R and Patterson, Nick and Pringle, Tom H and Chiaromonte, Francesca and Mullikin, James C and Eichler, Evan E and Hardison, Ross C and Gibbs, Richard A and Harkins, Timothy T and Hayes, Vanessa M},
title = {{Complete Khoisan and Bantu genomes from southern Africa}},
journal = {Nature},
year = {2010},
volume = {463},
number = {7283},
pages = {943--947},
month = feb
}
@article{Uchii:2011ce,
author = {Uchii, Kimiko and Uchii, Kimiko and Telschow, Arndt and Telschow, Arndt and Minamoto, Toshifumi and Minamoto, Toshifumi and Yamanaka, Hiroki and Yamanaka, Hiroki and Honjo, Mie N and Honjo, Mie N and Matsui, Kazuaki and Matsui, Kazuaki and Kawabata, Zen'ichiro and Kawabata, Zen'ichiro},
title = {{Transmission dynamics of an emerging infectious disease in wildlife through host reproductive cycles.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {2},
pages = {244--251},
month = feb
}
@article{Kallio:2010hh,
author = {Kallio, E R and Begon, M and Henttonen, H and Koskela, E and Mappes, T and Vaheri, A and Vapalahti, O},
title = {{Hantavirus infections in fluctuating host populations: the role of maternal antibodies}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1701},
pages = {3783--3791},
month = nov
}
@article{Currie:1998vs,
author = {Currie, DR and Burke, T and Whitney, RL and Thompson, DBA},
title = {{Male and female behaviour and extra-pair paternity in the wheatear}},
journal = {Animal Behaviour},
year = {1998},
volume = {55},
pages = {689--703}
}
@article{Smith:2011cu,
author = {Smith, Daniel R and Hardy, Ian C W and Gammell, Martin P},
title = {{Power rangers: no improvement in the statistical power of analyses published in Animal Behaviour}},
journal = {Animal Behaviour},
year = {2011},
volume = {81},
number = {1},
pages = {347--352},
month = jan
}
@article{Fraser:2011hm,
author = {Fraser, Bonnie A and Weadick, Cameron J and Weadick, Cameron J and Janowitz, Ilana and Janowitz, Ilana and Rodd, Helen and Rodd, Helen and Hughes, Kimberly A and Hughes, Kimberly A},
title = {{Sequencing and characterization of the guppy (\emph{Poecilia reticulata}) transcriptome}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {202},
month = apr
}
@article{Field:2006ci,
author = {Field, Jeremy and Cronin, Adam and Bridge, Catherine},
title = {{Future fitness and helping in social queues}},
journal = {Nature},
year = {2006},
volume = {441},
number = {7090},
pages = {214--217},
month = may
}
@article{Wang:2011ii,
author = {Wang, Zhe and Wang, Zhe and Young, Rebecca L and Young, Rebecca L and Xue, Huiling and Xue, Huiling and Wagner, G{\"u}nter P and Wagner, G{\"u}nter P},
title = {{Transcriptomic analysis of avian digits reveals conserved and derived digit identities in birds}},
journal = {Nature},
year = {2011},
volume = {477},
number = {7366},
pages = {583--586},
month = sep
}
@article{Small:2013hy,
author = {Small, Clayton M and Harlin-Cognato, April D and Jones, Adam G},
title = {{Functional similarity and molecular divergence of a novel reproductive transcriptome in two male-pregnant Syngnathuspipefish species}},
journal = {Ecology and Evolution},
year = {2013},
pages = {n/a--n/a},
month = sep
}
@article{Posada:2001wh,
author = {Posada, D and Crandall, K A},
title = {{Selecting models of nucleotide substitution: an application to human immunodeficiency virus 1 (HIV-1)}},
journal = {Molecular Biology and Evolution},
year = {2001},
volume = {18},
number = {6},
pages = {897--906},
month = jun
}
@article{Avise:2008ge,
author = {Avise, J C and Hubbell, S P and Ayala, F J},
title = {{Colloquium Paper: In the light of evolution II: Biodiversity and extinction}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {Supplement 1},
pages = {11453--11457},
month = aug
}
@article{Hotta:2009hj,
author = {Hotta, Kikuko and Nakamura, Takahiro and Takasaki, Junichi and Takahashi, Hiroshi and Takahashi, Atsushi and Nakata, Yoshio and Kamohara, Seika and Kotani, Kazuaki and Komatsu, Ryoya and Itoh, Naoto and Mineo, Ikuo and Wada, Jun and Masuzaki, Hiroaki and Yoneda, Masato and Nakajima, Atsushi and Funahashi, Tohru and Miyazaki, Shigeru and Tokunaga, Katsuto and Hamaguchi, Kazuyuki and Tanaka, Kiyoji and Yamada, Kentaro and Hanafusa, Toshiaki and Oikawa, Shinichi and Yoshimatsu, Hironobu and Nakao, Kazuwa and Sakata, Toshiie and Matsuzawa, Yuji and Kamatani, Naoyuki and Nakamura, Yusuke},
title = {{Screening of 336 single-nucleotide polymorphisms in 85 obesity-related genes revealed McKusick{\textendash}Kaufman syndrome gene variants are associated with metabolic syndrome}},
journal = {Journal of Human Genetics},
year = {2009},
volume = {54},
number = {4},
pages = {230--235},
month = feb
}
@article{Enard:2010ko,
author = {Enard, David and Depaulis, Frantz and Roest Crollius, Hugues},
title = {{Human and Non-Human Primate Genomes Share Hotspots of Positive Selection}},
journal = {PLOS Genetics},
year = {2010},
volume = {6},
number = {2},
pages = {e1000840},
month = feb
}
@article{Hayes:2009em,
author = {Hayes, Loren D and Chesh, Adrian S and Castro, Rodrigo A and Tolhuysen, Liliana Ortiz and Burger, Joseph Robert and Bhattacharjee, Joydeep and Ebensperger, Luis A},
title = {{Fitness consequences of group living in the degu Octodon degus, a plural breeder rodent with communal care}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {1},
pages = {131--139},
month = jul
}
@article{Feldman:2009dg,
author = {Feldman, C R and Brodie, E D and Brodie, E D and Pfrender, M E},
title = {{The evolutionary origins of beneficial alleles during the repeated adaptation of garter snakes to deadly prey}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {32},
pages = {13415--13420},
month = aug
}
@article{Fitze:2005wn,
author = {Fitze, PS and Le Galliard, JF and Federici, P and Richard, M and Clobert, J},
title = {{Conflict over multiple-partner mating between males and females of the polygynandrous common lizards}},
journal = {Evolution},
year = {2005},
volume = {59},
number = {11},
pages = {2451--2459}
}
@article{Wares:2009et,
author = {Wares, John P},
title = {{NATURAL DISTRIBUTIONS OF MITOCHONDRIAL SEQUENCE DIVERSITY SUPPORT NEW NULL HYPOTHESES}},
journal = {Evolution},
year = {2009},
volume = {64},
number = {4},
pages = {1136--1142},
month = oct
}
@book{Devarajan:2008jj,
author = {Devarajan, P.},
title = {{Proteomics for the Investigation of Acute Kidney Injury}},
publisher = {Karger Publishers},
year = {2008},
volume = {160},
address = {Basel}
}
@article{Welle:2009tf,
author = {Welle, M and Philipp, U and Rufenacht, S and Roosje, P and Scharfenstein, M and Schutz, E and Brenig, B and Linek, M and Mecklenburg, L and Grest, P},
title = {{MLPH Genotype{\textemdash}Melanin Phenotype Correlation in Dilute Dogs}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {suppl 1},
pages = {S75}
}
@article{Feldon:2011kg,
author = {Feldon, David F and Feldon, David F and Peugh, James and Peugh, James and Timmerman, Briana E and Timmerman, Briana E and Maher, Michelle A and Maher, Michelle A and Hurst, Melissa and Hurst, Melissa and Strickland, Denise and Strickland, Denise and Gilmore, Joanna A and Gilmore, Joanna A and Stiegelmeyer, Cindy and Stiegelmeyer, Cindy},
title = {{Graduate students' teaching experiences improve their methodological research skills.}},
journal = {Science (New York, NY)},
year = {2011},
volume = {333},
number = {6045},
pages = {1037--1039},
month = aug
}
@article{Fredsted:2007gw,
author = {Fredsted, Tina and Schierup, Mikkel H and Groeneveld, Linn F and Kappeler, Peter M},
title = {{Genetic structure, lack of sex-biased dispersal and behavioral flexibility in the pair-living fat-tailed dwarf lemur, Cheirogaleus medius}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {61},
number = {6},
pages = {943--954},
month = jan
}
@article{Cameron:2009wi,
author = {Cameron, G and Williams, J and Kruchek, B and Kruchek, B},
title = {{Seasonal Dynamics of Small Mammals and Vegetation in A Gulf Cordgrass Community}},
journal = {The Southwestern Naturalist},
year = {2009}
}
@article{Taylor:2008wf,
author = {Taylor, Michelle L and Wigmore, Clare and Hodgson, David J and Wedell, Nina and Hosken, David J},
title = {{Multiple mating increases female fitness in \textit{Drosophila} \textit{simulans}}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {3},
pages = {963--970},
month = sep
}
@article{Goralski:2010eo,
author = {Goralski, Jennifer L and Boucher, Richard C and Button, Brian},
title = {{Osmolytes and ion transport modulators: new strategies for airway surface rehydration}},
journal = {Current Opinion in Pharmacology},
year = {2010},
volume = {10},
number = {3},
pages = {294--299},
month = jun
}
@article{Eddy:2005cj,
author = {Eddy, Sean R and Eddy, Sean R},
title = {{{\textquotedblleft}Antedisciplinary{\textquotedblright} Science}},
journal = {PLOS Computational Biology},
year = {2005},
volume = {1},
number = {1},
pages = {e6}
}
@article{Kyle:2007gz,
author = {Kyle, C J and Karels, T J and Davis, C S and Mebs, S and Clark, B and Strobeck, C and Hik, D S},
title = {{Social structure and facultative mating systems of hoary marmots ( Marmota caligata)}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {6},
pages = {1245--1255},
month = jan
}
@article{Anonymous:2012vj,
title = {{The genetic architecture of adaptations to high altitude in Ethiopia}},
year = {2012},
pages = {1--79},
month = nov
}
@article{Dawson:2012tu,
author = {Dawson, J A and Ye, S and al, et},
title = {{R/EBcoexpress: an empirical Bayesian framework for discovering differential co-expression}},
journal = {Bioinformatics (Oxford, England)},
year = {2012}
}
@article{SenSarma:2009jr,
author = {Sen Sarma, Moushumi and Rodriguez-Zas, Sandra L and Hong, Feng and Zhong, Sheng and Robinson, Gene E},
title = {{Transcriptomic profiling of central nervous system regions in three species of honey bee during dance communication behavior.}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6408}
}
@article{Kleven:2005jb,
author = {Kleven, O and Jacobsen, F and Robertson, R J and Lifjeld, J T},
title = {{Extrapair mating between relatives in the barn swallow: a role for kin selection?}},
journal = {Biology Letters},
year = {2005},
volume = {1},
number = {4},
pages = {389--392},
month = dec
}
@article{Sala:2000tc,
author = {Sala, O E and Chapin, F S and Armesto, J J and Berlow, E and Bloomfield, J and Dirzo, R and Huber-Sanwald, E and Huenneke, L F and Jackson, R B and Kinzig, A and Leemans, R and Lodge, D M and Mooney, H A and Oesterheld, M and Poff, N L and Sykes, M T and Walker, B H and Walker, M and Wall, D H},
title = {{Global biodiversity scenarios for the year 2100}},
journal = {Science (New York, NY)},
year = {2000},
volume = {287},
number = {5459},
pages = {1770--1774},
month = mar
}
@article{Suarez:2004tl,
author = {Suarez, AV and Tsutsui, ND},
title = {{The value of museum collections for research and society}},
journal = {Bioscience},
year = {2004},
volume = {54},
number = {1},
pages = {66--74}
}
@article{Barrick:2009in,
author = {Barrick, Jeffrey E and Yu, Dong Su and Yoon, Sung Ho and Jeong, Haeyoung and Oh, Tae Kwang and Schneider, Dominique and Lenski, Richard E and Kim, Jihyun F},
title = {{Genome evolution and adaptation in a long-term experiment with Escherichia coli}},
journal = {Nature},
year = {2009},
volume = {461},
number = {7268},
pages = {1243--1247},
month = oct
}
@article{Anonymous:kht3tolD,
title = {{Two theories of sex and variation}},
year = {2006},
pages = {11},
month = mar
}
@article{Eck:2009df,
author = {Eck, Sebastian H and Benet-Pag{\`e}s, Anna and Flisikowski, Krzysztof and Meitinger, Thomas and Fries, Ruedi and Strom, Tim M},
title = {{Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {8},
pages = {R82}
}
@article{Stewart:2006ug,
author = {Stewart, IRK and Hanschu, RD and Burke, T and Westneat, DF},
title = {{Tests of ecological, phenotypic, and genetic correlates of extra-pair paternity in the House Sparrow}},
journal = {The Condor},
year = {2006},
volume = {108},
number = {2},
pages = {399--413}
}
@article{Anonymous:2009gb,
author = {Moeller, Hanne B and MacAulay, Nanna and Knepper, Mark A and Fenton, Robert A},
title = {{Role of multiple phosphorylation sites in the COOH-terminal tail of aquaporin-2 for water transport: evidence against channel gating.}},
journal = {American Journal of Physiology-Renal Physiology},
year = {2009},
volume = {296},
number = {3},
pages = {F649--57},
month = mar
}
@article{Naidu:2001tc,
author = {Naidu, S G and Naidu, S G},
title = {{Osmoregulation in Onymacris rugatipennis, a free-ranging tenebrionid beetle from the Namib Desert.}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2001},
volume = {129},
number = {4},
pages = {873--885},
month = jul
}
@article{Grice:2009ee,
author = {Grice, E A and Kong, H H and Conlan, S and Deming, C B and Davis, J and Young, A C and {NISC Comparative Sequencing Program} and Bouffard, G G and Blakesley, R W and Murray, P R and Green, E D and Turner, M L and Segre, J A},
title = {{Topographical and Temporal Diversity of the Human Skin Microbiome}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5931},
pages = {1190--1192},
month = may
}
@article{Oyegbile:2005gi,
author = {Oyegbile, Temitayo O and Marler, Catherine A},
title = {{Winning fights elevates testosterone levels in California mice and enhances future ability to win fights}},
journal = {Hormones and Behavior},
year = {2005},
volume = {48},
number = {3},
pages = {259--267},
month = sep
}
@article{Waples:1989tv,
author = {Waples, RS},
title = {{A Generalized-Approach for Estimating Effective Population-Size From Temporal Changes in Allele Frequency}},
journal = {Genetics},
year = {1989},
volume = {121},
number = {2},
pages = {379--391}
}
@article{Wright:2008jd,
author = {Wright, Stephen I and Nano, Nardin and Foxe, John Paul and Dar, Vaqaar-Un Nisa},
title = {{Effective population size and tests of neutrality at cytoplasmic genes in Arabidopsis}},
journal = {Genetical Research},
year = {2008},
volume = {90},
number = {01},
month = feb
}
@article{Langfelder:2008bdb,
author = {Langfelder, Peter and Horvath, Steve},
title = {{WGCNA: an R package for weighted correlation network analysis.}},
journal = {BMC Bioinformatics},
year = {2008},
volume = {9},
number = {1},
pages = {559}
}
@article{Anonymous:Nse7EwMw,
title = {{New paper}},
year = {2002},
pages = {1--16},
month = mar
}
@article{Sommer:2002ha,
author = {Sommer, S and Schwab, D and Schwab, D and Ganzhorn, JU and Ganzhorn, JU},
title = {{MHC diversity of endemic Malagasy rodents in relation to geographic range and social system}},
journal = {Behavioral Ecology and Sociobiology},
year = {2002},
volume = {51},
number = {3},
pages = {214--221}
}
@article{Whittingham:2010em,
author = {Whittingham, L A and Dunn, P O},
title = {{Fitness benefits of polyandry for experienced females}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {11},
pages = {2328--2335},
month = apr
}
@article{AmborellaGenomeProject:2013gh,
author = {{Amborella Genome Project} and Albert, V A and Barbazuk, W B and dePamphilis, C W and Der, J P and Leebens-Mack, J and Ma, H and Palmer, J D and Rounsley, S and Sankoff, D and Schuster, S C and Soltis, D E and Soltis, P S and Wessler, S R and Wing, R A and Ammiraju, J S S and Barbazuk, W B and Chamala, S and Chanderbali, A S and dePamphilis, C W and Determann, R and Leebens-Mack, J and Ma, H and Ralph, P and Rounsley, S and Schuster, S C and Soltis, D E and Soltis, P S and Talag, J and Tomsho, L and Walts, B and Wanke, S and Wing, R A and Barbazuk, W B and Chang, T H and Determann, R and Lan, T and Soltis, D E and Soltis, P S and Arikit, S and Axtell, M J and Ayyampalayam, S and Barbazuk, W B and Burnette, J M and De Paoli, E and dePamphilis, C W and Estill, J C and Farrell, N P and Harkess, A and Jiao, Y and Leebens-Mack, J and Liu, K and Mei, W and Meyers, B C and Shahid, S and Wafula, E and Wessler, S R and Zhai, J and Zhang, X and Carretero-Paulet, L and Jiao, Y and Lyons, E and Tang, H and Wafula, E and Zheng, C and Altman, N S and Barbazuk, W B and Carretero-Paulet, L and Estill, J C and Jiao, Y and Liu, K and Mei, W and Wafula, E and Altman, N S and Arikit, S and Axtell, M J and Chen, F and Chen, J Q and Chiang, V and De Paoli, E and Fogliani, B and Guo, C and Harholt, J and Harkess, A and Job, C and Job, D and Kim, S and Kong, H and Li, G and Li, L and Liu, J and Meyers, B C and Park, J and Qi, X and Rajjou, L and Burtet-Sarramegna, V and Sederoff, R and Shahid, S and Soltis, D E and Soltis, P S and Sun, Y H and Ulvskov, P and Villegente, M and Xue, J Y and Yeh, T F and Yu, X and Zhai, J and Acosta, J J and Bruenn, R A and de Kochko, A and Herrera-Estrella, L R and Ibarra-Laclette, E and Kirst, M and Pissis, S P and Poncet, V and Schuster, S C},
title = {{The Amborella Genome and the Evolution of Flowering Plants}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6165},
pages = {1241089--1241089},
month = dec
}
@article{Roy:2011ch,
author = {Roy, Rohini and Chun, Jarin and Powell, Simon N},
title = {{BRCA1 and BRCA2: different roles in a common pathway of genome protection}},
journal = {Nature Reviews Cancer},
year = {2011},
volume = {12},
number = {1},
pages = {68--78},
month = dec
}
@article{Bretman:2009jt,
author = {Bretman, Amanda and Newcombe, Devi and Tregenza, Tom},
title = {{Promiscuous females avoid inbreeding by controlling sperm storage}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {16},
pages = {3340--3345},
month = aug
}
@article{Almeida:2008cv,
author = {Almeida, F C and Desalle, R},
title = {{Evidence of Adaptive Evolution of Accessory Gland Proteins in Closely Related Species of the \textit{Drosophila} repleta Group}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {9},
pages = {2043--2053},
month = jun
}
@article{HJELLE:1994uw,
author = {HJELLE, B and HJELLE, B and CHAVEZGILES, F and CHAVEZGILES, F and TORREZMARTINEZ, N and TORREZMARTINEZ, N and YATES, T and YATES, T and SARISKY, J and SARISKY, J and WEBB, J and WEBB, J and ASCHER, M and ASCHER, M},
title = {{GENETIC IDENTIFICATION OF A NOVEL HANTAVIRUS OF THE HARVEST MOUSE REITHRODONTOMYS MEGALOTIS}},
journal = {Journal of Virology},
year = {1994},
volume = {68},
number = {10},
pages = {6751--6754}
}
@article{Brown:1995vo,
author = {Brown, Dennis and Katsura, Toshiya and Kawashima, Megumi and Verkman, A S and Sabolic, Ivan},
title = {{Cellular distribution of the aquaporins: A family of water channel proteins}},
journal = {Histochemistry and Cell Biology},
year = {1995},
volume = {104},
number = {1},
pages = {1--9}
}
@article{Gibson:2013ep,
author = {Gibson, Amanda K and Gibson, Amanda K and Smith, Zach and Smith, Zach and Fuqua, Clay and Fuqua, Clay and Clay, Keith and Clay, Keith and Colbourne, John K and Colbourne, John K},
title = {{Why so many unknown genes? Partitioning orphans from a representative transcriptome of the lone star tick Amblyomma \textit{americanum}}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {135}
}
@article{Huey:2011cv,
author = {Huey, R B and Huey, R B and Kingsolver, J G and Kingsolver, J G},
title = {{Variation in universal temperature dependence of biological rates}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {26},
pages = {10377--10378},
month = jun
}
@article{Lifjeld:2012hn,
author = {Lifjeld, Jan T and Laskemoen, Terje and Kleven, Oddmund and Pedersen, A Tiril M and Lampe, Helene M and Rudolfsen, Geir and Schmoll, Tim and Slagsvold, T},
title = {{No Evidence for Pre-Copulatory Sexual Selection on Sperm Length in a Passerine Bird}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e32611},
month = feb
}
@article{Avise:2010er,
author = {Avise, J C and Liu, J X},
title = {{Multiple mating and its relationship to alternative modes of gestation in male-pregnant versus female-pregnant fish species}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {44},
pages = {18915--18920},
month = nov
}
@article{Drury:2010kp,
author = {Drury, Jonathan P},
title = {{Immunity and mate choice: a new outlook}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {3},
pages = {539--545},
month = mar
}
@article{Domingues:2012kw,
author = {Domingues, Vera S and Poh, Yu-Ping and Peterson, Brant K and Peterson, Brant K and Pennings, Pleuni S and Jensen, Jeffrey D and Hoekstra, Hopi E and Hoekstra, Hopi E},
title = {{Evidence of adaptation from ancestral variation in young populations of beach mice.}},
journal = {Evolution},
year = {2012},
volume = {66},
number = {10},
pages = {3209--3223},
month = oct
}
@article{Kayano:2009be,
author = {Kayano, M and Takigawa, I and Shiga, M and Tsuda, K and Mamitsuka, H},
title = {{Efficiently finding genome-wide three-way gene interactions from transcript- and genotype-data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {21},
pages = {2735--2743},
month = oct
}
@article{Anonymous:BFzZe0yW,
title = {{MrBayes 3.1 Manual}},
year = {2005},
pages = {1--69},
month = may
}
@article{Sih:2004ti,
author = {Sih, A and Bell, AM and Johnson, JC and Ziemba, RE},
title = {{Behavioral syndromes: An integrative overview}},
journal = {Quarterly Review of Biology},
year = {2004},
volume = {79},
number = {3},
pages = {241--277}
}
@article{HARWOOD:vu,
author = {HARWOOD, AS and HARWOOD, AS and PHILLIPS, RB and PHILLIPS, RB},
title = {{A suite of twelve single nucleotide polymorphism markers for detecting introgression between cutthroat and rainbow trout}},
journal = {Molecular Ecology Resources}
}
@article{LECROY:1995wj,
author = {LECROY, M and DIAMOND, J},
title = {{PLUMAGE VARIATION IN THE BROAD-BILLED FAIRY-WREN MALURUS-GRAYI}},
journal = {Emu},
year = {1995},
volume = {95},
pages = {185--193}
}
@article{Tripet:2005us,
author = {Tripet, F and Thiemann, T and Lanzaro, GC},
title = {{Effect of seminal fluids in mating between M and S forms of Anopheles gambiae}},
journal = {Journal of Medical Entomology},
year = {2005},
volume = {42},
number = {4},
pages = {596--603}
}
@article{Jones:2010eo,
author = {Jones, Owen R and Jones, Owen R and Wang, Jinliang},
title = {{COLONY: a program for parentage and sibship inference from multilocus genotype data}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {10},
pages = {551--555},
month = mar
}
@article{Illes:2009ef,
author = {Illes, A E and Yunes-Jimenez, L},
title = {{A female songbird out-sings male conspecifics during simulated territorial intrusions}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1658},
pages = {981--986},
month = mar
}
@article{Anonymous:2011is,
title = {{Second-generation high-throughput forward genetic screen in mice to isolate subtle behavioral mutants}},
year = {2011},
pages = {1--19},
month = sep
}
@article{bchboes:2009tx,
author = {{bch1boes}},
title = {{Microsoft Word - Supporting Table S1.doc}},
year = {2009},
pages = {1--6},
month = feb
}
@article{DHont:2012gt,
author = {D{\textquoteright}Hont, Ang{\'e}lique and D{\textquoteright}Hont, Ang{\'e}lique and Denoeud, France and Aury, Jean-Marc and Baurens, Franc-Christophe and Baurens, Franc-Christophe and Carreel, Fran{\c c}oise and Carreel, Fran{\c c}oise and Garsmeur, Olivier and Garsmeur, Olivier and Noel, Benjamin and Bocs, St{\'e}phanie and Bocs, St{\'e}phanie and Droc, Ga{\"e}tan and Droc, Ga{\"e}tan and Rouard, Mathieu and Rouard, Mathieu and Da Silva, Corinne and Jabbari, Kamel and Jabbari, Kamel and Cardi, C{\'e}line and Cardi, C{\'e}line and Poulain, Julie and Poulain, Julie and Souquet, Marl{\`e}ne and Souquet, Marl{\`e}ne and Labadie, Karine and Labadie, Karine and Jourda, Cyril and Jourda, Cyril and Lengell{\'e}, Juliette and Lengell{\'e}, Juliette and Rodier-Goud, Marguerite and Rodier-Goud, Marguerite and Alberti, Adriana and Alberti, Adriana and Bernard, Maria and Bernard, Maria and Correa, Margot and Correa, Margot and Ayyampalayam, Saravanaraj and Ayyampalayam, Saravanaraj and Mckain, Michael R and Mckain, Michael R and Leebens-Mack, Jim and Leebens-Mack, Jim and Burgess, Diane and Burgess, Diane and Freeling, Mike and Freeling, Mike and Mb{\'e}gui{\'e}-A-Mb{\'e}gui{\'e}, Didier and Mb{\'e}gui{\'e}-A-Mb{\'e}gui{\'e}, Didier and Chabannes, Matthieu and Chabannes, Matthieu and Wicker, Thomas and Wicker, Thomas and Panaud, Olivier and Panaud, Olivier and Barbosa, Jose and Barbosa, Jose and Hribova, Eva and Hribova, Eva and Heslop-Harrison, Pat and Heslop-Harrison, Pat and Habas, R{\'e}my and Habas, R{\'e}my and Rivallan, Ronan and Rivallan, Ronan and Francois, Philippe and Francois, Philippe and Poiron, Claire and Poiron, Claire and Kilian, andrzej and Kilian, andrzej and Burthia, Dheema and Burthia, Dheema and Jenny, Christophe and Jenny, Christophe and Bakry, Fr{\'e}d{\'e}ric and Bakry, Fr{\'e}d{\'e}ric and Brown, Spencer and Brown, Spencer and Guignon, Valentin and Guignon, Valentin and Kema, Gert and Kema, Gert and Dita, Miguel and Dita, Miguel and Waalwijk, Cees and Waalwijk, Cees and Joseph, Steeve and Joseph, Steeve and Dievart, Anne and Dievart, Anne and Jaillon, Olivier and Leclercq, Julie and Leclercq, Julie and Argout, Xavier and Argout, Xavier and Lyons, Eric and Lyons, Eric and Almeida, Ana and Almeida, Ana and Jeridi, Mouna and Jeridi, Mouna and Dolezel, Jaroslav and Dolezel, Jaroslav and Roux, Nicolas and Roux, Nicolas and Risterucci, Ange-Marie and Risterucci, Ange-Marie and Weissenbach, Jean and Weissenbach, Jean and Ruiz, Manuel and Ruiz, Manuel and Glaszmann, Jean-Christophe and Glaszmann, Jean-Christophe and Qu{\'e}tier, Francis and Qu{\'e}tier, Francis and Yahiaoui, Nabila and Yahiaoui, Nabila and Wincker, Patrick},
title = {{The banana (Musa acuminata) genome and the evolution of monocotyledonous plants}},
journal = {Nature},
year = {2012},
volume = {488},
number = {7410},
pages = {213--217},
month = jul
}
@article{Dall:2005cb,
author = {DALL, S and GIRALDEAU, L and Olsson, O and MCNAMARA, J and STEPHENS, D},
title = {{Information and its use by animals in evolutionary ecology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2005},
volume = {20},
number = {4},
pages = {187--193},
month = apr
}
@article{Bihorac:2010be,
author = {Bihorac, Azra and Delano, Matthew J and Schold, Jesse D and Lopez, Maria Cecilia and Nathens, Avery B and Maier, Ronald V and Layon, Abraham Joseph and Baker, Henry V and Moldawer, Lyle L},
title = {{Incidence, Clinical Predictors, Genomics, and Outcome of Acute Kidney Injury Among Trauma Patients}},
journal = {Annals of Surgery},
year = {2010},
volume = {252},
number = {1},
pages = {158--165},
month = jul
}
@inproceedings{Fuglede:2004cg,
author = {Fuglede, B and Topsoe, F},
title = {{Jensen-Shannon divergence and Hilbert space embedding}},
booktitle = {ISIT Proceedings.},
year = {2004},
pages = {30--30},
publisher = {IEEE},
month = jun
}
@article{Frenkel:2012jq,
author = {Frenkel, Svetlana and Frenkel, Svetlana and Kirzhner, Valery and Kirzhner, Valery and Korol, Abraham and Korol, Abraham},
title = {{Organizational Heterogeneity of Vertebrate Genomes}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e32076},
month = feb
}
@article{Wilkinson:2010fh,
author = {Wilkinson, S and Haley, C and Alderson, L and Wiener, P},
title = {{An empirical assessment of individual-based population genetic statistical techniques: application to British pig breeds}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {2},
pages = {261--269},
month = jun
}
@article{Parker:1996uk,
author = {Parker, A and Kornfield, I},
title = {{Polygynandry in Pseudotropheus zebra, a cichlid fish from Lake Malawi}},
journal = {Environmental Biology of Fishes},
year = {1996},
volume = {47},
number = {4},
pages = {345--352}
}
@article{Florance:2011eu,
author = {Florance, D and Florance, D and Webb, J K and Webb, J K and Dempster, T and Dempster, T and Kearney, M R and Kearney, M R and Worthing, A and Worthing, A and Letnic, M and Letnic, M},
title = {{Excluding access to invasion hubs can contain the spread of an invasive vertebrate}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
volume = {278},
number = {1720},
pages = {2900--2908},
month = aug
}
@article{Fry:2009bj,
author = {Fry, B G and Wroe, S and Teeuwisse, W and van Osch, M J P and Moreno, K and Ingle, J and McHenry, C and Ferrara, T and Clausen, P and Scheib, H and Winter, K L and Greisman, L and Roelants, K and van der Weerd, L and Clemente, C J and Giannakis, E and Hodgson, W C and Luz, S and Martelli, P and Krishnasamy, K and Kochva, E and Kwok, H F and Scanlon, D and Karas, J and Citron, D M and Goldstein, E J C and Mcnaughtan, J E and Norman, J A},
title = {{A central role for venom in predation by Varanus komodoensis (Komodo Dragon) and the extinct giant Varanus (Megalania) priscus}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {22},
pages = {8969--8974},
month = jun
}
@article{Kikkawa:2005be,
author = {Kikkawa, Eri F and Tsuda, Tomi T and Naruse, Taeko K and Sumiyama, Daisuke and Fukuda, Michio and Kurita, Masanori and Murata, Koichi and Wilson, Rory P and LeMaho, Yvon and Tsuda, Michio and Kulski, Jerzy K and Inoko, Hidetoshi},
title = {{Analysis of the sequence variations in the Mhc DRB1-like gene of the endangered Humboldt penguin (Spheniscus humboldti)}},
journal = {Immunogenetics},
year = {2005},
volume = {57},
number = {1-2},
pages = {99--107},
month = feb
}
@article{Birdsall:1973wc,
author = {Birdsall, D Alan and Nash, D},
title = {{Occurrence of successful multiple insemination of females in natural populations of deer mice (\emph{\textit{Peromyscus} \textit{maniculatus}})}},
journal = {Evolution},
year = {1973},
volume = {27},
number = {1},
pages = {106--110}
}
@article{Kingma:2012fd,
author = {Kingma, Sjouke A and Kingma, Sjouke A and Hall, Michelle L and Peters, Anne},
title = {{Sperm storage reflects within- and extra-pair mating opportunities in a cooperatively breeding bird}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
month = may
}
@article{Stockley:1997vf,
author = {Stockley, P},
title = {{Sexual conflict resulting from adaptations to sperm competition}},
journal = {Trends In Ecology {\&} Evolution},
year = {1997},
volume = {12},
number = {4},
pages = {154--159}
}
@article{Dietrich:2004kg,
author = {Dietrich, Verena and Schmoll, Tim and Winkel, Wolfgang and Epplen, J rg T and Lubjuhn, Thomas},
title = {{Cuckoldry and recapture probability of adult males are not related in the socially monogamous coal tit (Parus ater)}},
journal = {Journal of Ornithology},
year = {2004},
volume = {145},
number = {4},
pages = {327--333},
month = aug
}
@article{Gasparini:2011bf,
author = {Gasparini, Clelia and Gasparini, Clelia and Pilastro, andrea and Pilastro, andrea and Evans, Jonathan P},
title = {{Male Genital Morphology and Its Influence on Female Mating Preferences and Paternity Success in Guppies}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {7},
pages = {e22329},
month = jul
}
@article{MunguiaVega:2007kk,
author = {Munguia-Vega, Adrian and Esquer-Garrigos, Yareli and Rojas-Bracho, Lorenzo and Vazquez-Juarez, Ricardo and Castro-Prieto, Aines and Flores-Ramirez, Sergio},
title = {{Genetic drift vs. natural selection in a long-term small isolated population: major histocompatibility complex class II variation in the Gulf of California endemic porpoise ( Phocoena sinus)}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {19},
pages = {4051--4065},
month = oct
}
@article{Goodson:2005gb,
author = {Goodson, James L},
title = {{The vertebrate social behavior network: Evolutionary themes and variations}},
journal = {Hormones and Behavior},
year = {2005},
volume = {48},
number = {1},
pages = {11--22},
month = jun
}
@article{Bryja:2008hx,
author = {Bryja, Josef and Patzenhauerov{\'a}, Hana and Albrecht, Tomas and Mosansky, Ladislav and Stanko, Michal and Stopka, Pavel},
title = {{Varying levels of female promiscuity in four Apodemus mice species}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {63},
number = {2},
pages = {251--260},
month = sep
}
@article{Reynolds:2009cq,
author = {Reynolds, Sheila M. and Reynolds, Sheila M. and Christman, Mary C. and Christman, Mary C. and Uy, J. Albert C. and Uy, J. Albert C. and Patricelli, Gail L. and Patricelli, Gail L. and Braun, Michael J and Braun, Michael J and Borgia, Gerald and Borgia, Gerald},
title = {{Lekking satin bowerbird males aggregate with relatives to mitigate aggression}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {2},
pages = {410--415}
}
@article{Dunn:1999ty,
author = {Dunn, PO and Cockburn, A},
title = {{Extrapair mate choice and honest signaling in cooperatively breeding superb fairy-wrens}},
journal = {Evolution},
year = {1999},
volume = {53},
number = {3},
pages = {938--946}
}
@article{Simmons:2007kh,
author = {Simmons, Leigh W and Beveridge, Maxine and Kennington, W Jason},
title = {{Polyandry in the wild: temporal changes in female mating frequency and sperm competition intensity in natural populations of the tettigoniid Requena verticalis}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {21},
pages = {4613--4623},
month = nov
}
@article{Barney:1997hb,
author = {Barney, C C},
title = {{Effects of preloads of water and saline on thermal dehydration-induced thirst.}},
journal = {Physiology {\&} Behavior},
year = {1997},
volume = {61},
number = {5},
pages = {763--769},
month = may
}
@article{McEvoy:2009jh,
author = {McEvoy, B P and Montgomery, G W and McRae, A F and Ripatti, S and Perola, M and Spector, T D and Cherkas, L and Ahmadi, K R and Boomsma, D and Willemsen, G and Hottenga, J J and Pedersen, N L and Magnusson, P K E and Kyvik, K O and Christensen, K and Kaprio, J and Heikkila, K and Palotie, A and Widen, E and Muilu, J and Syvanen, A C and Liljedahl, U and Hardiman, O and Cronin, S and Peltonen, L and Martin, N G and Visscher, P M},
title = {{Geographical structure and differential natural selection among North European populations}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {5},
pages = {804--814},
month = may
}
@article{Li:2009fi,
author = {Li, H and Durbin, R},
title = {{Fast and accurate short read alignment with Burrows-Wheeler transform}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {14},
pages = {1754--1760},
month = jul
}
@article{Miles:2007hu,
author = {Miles, D B and Sinervo, B and Hazard, L C and Svensson, E I and Costa, D},
title = {{Relating endocrinology, physiology and behaviour using species with alternative mating strategies}},
journal = {Functional Ecology},
year = {2007},
volume = {21},
number = {4},
pages = {653--665},
month = aug
}
@article{Noble:2009da,
author = {Noble, William Stafford and Lewitter, Fran},
title = {{A Quick Guide to Organizing Computational Biology Projects}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {7},
pages = {e1000424},
month = jul
}
@article{Szabo:2008cm,
author = {Szabo, andy and Duffus, Dave},
title = {{Mother{\textendash}offspring association in the humpback whale, \textit{Megaptera novaeangliae}: following behaviour in an aquatic mammal}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {3},
pages = {1085--1092},
month = mar
}
@article{Krutzen:2004fg,
author = {Kr{\"u}tzen, Michael and Barr{\'e}, Lynne M and Connor, Richard C and Mann, Janet and Sherwin, William B},
title = {{{\textquoteleft}O father: where art thou?{\textquoteright}- Paternity assessment in an open fission-fusion society of wild bottlenose dolphins (Tursiops sp.) in Shark Bay, Western Australia}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {7},
pages = {1975--1990},
month = apr
}
@article{Kinahan:2008cb,
author = {Kinahan, A A and Bennett, N C and Belton, L. E. and Belton, L. E. and Bateman, P W},
title = {{Do mating strategies determine genital allometry in African mole rats (Bathyergidae)?}},
journal = {Journal of Zoology},
year = {2008},
volume = {274},
number = {4},
pages = {312--317}
}
@article{Philippe:2011ed,
author = {Philippe, Herv{\'e} and Brinkmann, Henner and Lavrov, Dennis V and Lavrov, Dennis V and Littlewood, D Timothy J and Littlewood, D Timothy J and Manuel, Michael and W{\"o}rheide, Gert and W{\"o}rheide, Gert and Baurain, Denis and Baurain, Denis},
title = {{Resolving difficult phylogenetic questions: why more sequences are not enough.}},
journal = {PLOS Biology},
year = {2011},
volume = {9},
number = {3},
pages = {e1000602},
month = mar
}
@article{Romero:2007fs,
author = {Romero, D G and Plonczynski, M W and Welsh, B L and Gomez-Sanchez, C E and Zhou, M Y and Gomez-Sanchez, E P},
title = {{Gene expression profile in rat adrenal zona glomerulosa cells stimulated with aldosterone secretagogues}},
journal = {Physiological Genomics},
year = {2007},
volume = {32},
number = {1},
pages = {117--127},
month = oct
}
@article{Hamady:2009hx,
author = {Hamady, M and Wilson, S A and Zaneveld, J and Sueoka, N and Knight, R},
title = {{CodonExplorer: an online tool for analyzing codon usage and sequence composition, scaling from genes to genomes}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {10},
pages = {1331--1332},
month = may
}
@article{Cornell:2007ja,
author = {Cornell, S J and Tregenza, T},
title = {{A new theory for the evolution of polyandry as a means of inbreeding avoidance}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1627},
pages = {2873--2879},
month = nov
}
@article{Rios:2010ee,
author = {Rios, Evelyn and {\'A}lvarez-Casta{\~n}eda, Sergio Ticul},
title = {{Phylogeography and systematics of the San Diego pocket mouse (Chaetodipus fallax)}},
journal = {Journal of Mammalogy},
year = {2010},
volume = {91},
number = {2},
pages = {293--301},
month = apr
}
@article{Luo:2013ct,
author = {Luo, Shiqi and Luo, Shiqi and Shu, Chang and Shu, Chang and Xu, Chongren and Xu, Chongren and Wang, Rongjiang and Wang, Rongjiang},
title = {{Molecular cloning and expression in vitro of a carboxylesterase gene from the Glanville fritillary butterfly (Melitaea cinxia)}},
journal = {Gene},
year = {2013},
volume = {524},
number = {2},
pages = {275--281},
month = jul
}
@article{Hawn:2009ib,
author = {Hawn, Thomas R and Scholes, Delia and Li, Shuying S and Wang, Hongwei and Yang, Yin and Roberts, Pacita L and Stapleton, Ann E and Janer, Marta and Aderem, Alan and Stamm, Walter E and Zhao, Lue Ping and Hooton, Thomas M},
title = {{Toll-Like Receptor Polymorphisms and Susceptibility to Urinary Tract Infections in Adult Women}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {6},
pages = {e5990},
month = jun
}
@article{Smith:2012bb,
author = {Smith, Zachary D and MacManes, Matthew David and Chan, Michelle M and Mikkelsen, Tarjei S and Gu, Hongcang and Gnirke, andreas and Regev, Aviv and Meissner, Alexander},
title = {{A unique regulatory phase of DNA methylation in the early mammalian embryo}},
journal = {Nature},
year = {2012},
volume = {484},
number = {7394},
pages = {339--344},
month = apr
}
@book{Falconer:1996tg,
author = {Falconer, D},
title = {{Introduction to Quantitative Genetics}},
publisher = {Longman Scientific and Technical},
year = {1996},
address = {Hong Kong},
edition = {4},
month = feb
}
@article{Tinbergen:1963ty,
author = {Tinbergen, N},
title = {{On aims and methods of Ethology}},
journal = {Zeitschrift f{\"u}r Tierpsychologie},
year = {1963},
pages = {411--433}
}
@article{Santucci:2007cx,
author = {Santucci, F and Ibrahim, K M and Bruzzone, A and Hewit, G M},
title = {{Selection on MHC-linked microsatellite loci in sheep populations}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {3},
pages = {340--348},
month = may
}
@article{Lorenzi:2008fq,
author = {Lorenzi, M C and Sella, G},
title = {{A measure of sexual selection in hermaphroditic animals: parentage skew and the opportunity for selection}},
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {21},
number = {3},
pages = {827--833},
month = may
}
@article{Baird:2008cq,
author = {Baird, Nathan A and Etter, Paul D and Atwood, Tressa S and Currey, Mark C and Shiver, Anthony L and Lewis, Zachary A and Selker, Eric U and Cresko, William A and Johnson, Eric A},
title = {{Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {10},
pages = {e3376},
month = oct
}
@article{Tan:2009jc,
author = {Tan, C S H and Pasculescu, A and Lim, W A and Pawson, T and Bader, G D and Linding, R},
title = {{Positive Selection of Tyrosine Loss in Metazoan Evolution}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5948},
pages = {1686--1688},
month = sep
}
@article{Johnson:2010kx,
author = {Johnson, Sheri L and Brockmann, H Jane},
title = {{Costs of multiple mates: an experimental study in horseshoe crabs}},
journal = {Animal Behaviour},
year = {2010},
volume = {80},
number = {5},
pages = {773--782},
month = nov
}
@article{Jongren:2010ix,
author = {J{\"o}ngren, M and J{\"o}ngren, M and Westander, J and Westander, J and N{\"a}tt, D and N{\"a}tt, D and Jensen, P and Jensen, P},
title = {{Brain gene expression in relation to fearfulness in female red junglefowl (Gallus gallus).}},
journal = {Genes, Brain and Behavior},
year = {2010},
volume = {9},
number = {7},
pages = {751--758},
month = oct
}
@article{Connolly:1998tx,
author = {Connolly, D L and Shanahan, C M and Weissberg, P L},
title = {{ScienceDirect.com - The International Journal of Biochemistry {\&} Cell Biology - The aquaporins. A family of water channel proteins}},
journal = {The international journal of {\ldots}},
year = {1998}
}
@article{Hughes:2007kx,
author = {Hughes, A L and Hughes, A L},
title = {{Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level.}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {4},
pages = {364--373},
month = oct
}
@article{Rowe:2010ia,
author = {Rowe, Melissah and Swaddle, John P and Pruett-Jones, Stephen and Webster, Michael S},
title = {{Plumage coloration, ejaculate quality and reproductive phenotype in the red-backed fairy-wren}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {6},
pages = {1239--1246},
month = jun
}
@article{Xu:2006gl,
author = {Xu, Wei and Jameson, Daniel and Tang, Bin and Higgs, Paul G},
title = {{The Relationship Between the Rate of Molecular Evolution and the Rate of Genome Rearrangement in Animal Mitochondrial Genomes}},
journal = {Journal of Molecular Evolution},
year = {2006},
volume = {63},
number = {3},
pages = {375--392},
month = jul
}
@article{Newman:1997we,
author = {Newman, D and Newman, D and Pilson, D and Pilson, D},
title = {{Increased probability of extinction due to decreased genetic effective population size: Experimental populations of Clarkia pulchella}},
journal = {Evolution},
year = {1997},
volume = {51},
number = {2},
pages = {354--362}
}
@article{Furlong:2008hl,
author = {Furlong, Rebecca F and Yang, Ziheng},
title = {{Diversifying and Purifying Selection in the Peptide Binding Region of DRB in Mammals}},
journal = {Journal of Molecular Evolution},
year = {2008},
volume = {66},
number = {4},
pages = {384--394},
month = mar
}
@article{a:2011uv,
author = {000a, 376 377 000v 000s 000h 000a 000r 000m},
title = {{Update on the Requirement for Instruction in the Responsible Conduct of Research
}},
year = {2011},
pages = {1--7},
month = apr
}
@article{GAYRAL:2011ew,
author = {GAYRAL, PHILIPPE and GAYRAL, PHILIPPE and WEINERT, LUCY and WEINERT, LUCY and CHIARI, YLENIA and CHIARI, YLENIA and TSAGKOGEORGA, GEORGIA and TSAGKOGEORGA, GEORGIA and BALLENGHIEN, MARION and BALLENGHIEN, MARION and GALTIER, NICOLAS and GALTIER, NICOLAS},
title = {{Next-generation sequencing of transcriptomes: a guide to RNA isolation in nonmodel animals.}},
journal = {Molecular Ecology Resources},
year = {2011},
month = apr
}
@article{PerezBrocal:2006he,
author = {Perez-Brocal, V and Gil, R and Ramos, S and Lamelas, A and Postigo, M and Michelena, J M and Silva, F J and Moya, A and Latorre, A},
title = {{A Small Microbial Genome: The End of a Long Symbiotic Relationship?}},
journal = {Science (New York, NY)},
year = {2006},
volume = {314},
number = {5797},
pages = {312--313},
month = oct
}
@article{Verdolin:2009bn,
author = {Verdolin, J L},
title = {{Gunnison{\textquoteright}s prairie dog (Cynomys gunnisoni): testing the resource dispersion hypothesis}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {6},
pages = {789--799},
month = feb
}
@article{Anonymous:2013dh,
author = {Yang, Ei-Wen and Girke, Thomas and Jiang, Tao},
title = {{Differential gene expression analysis using coexpression and RNA-Seq data.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {17},
pages = {2153--2161},
month = sep
}
@article{Kokko:1999ul,
author = {Kokko, H},
title = {{Cuckoldry and the stability of biparental care}},
journal = {Ecology Letters},
year = {1999},
volume = {2},
number = {4},
pages = {247--255}
}
@article{Canovas:2010iq,
author = {C{\'a}novas, Angela and Rincon, Gonzalo and Islas-Trejo, Alma and Wickramasinghe, Saumya and Medrano, Juan F},
title = {{SNP discovery in the bovine milk transcriptome using RNA-Seq technology}},
journal = {Mammalian Genome},
year = {2010},
volume = {21},
number = {11-12},
pages = {592--598},
month = nov
}
@article{Crew:1991tb,
author = {Crew, MD and FILIPOWSKY, ME and NESHAT, MS and NESHAT, MS and Smith, GS and WALFORD, RL},
title = {{TRANSMEMBRANE DOMAIN LENGTH VARIATION IN THE EVOLUTION OF MAJOR HISTOCOMPATIBILITY COMPLEX CLASS-I GENES}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1991},
volume = {88},
number = {11},
pages = {4666--4670}
}
@article{Ozsolak:2009kf,
author = {Ozsolak, Fatih and Platt, Adam R and Jones, Dan R and Reifenberger, Jeffrey G and Sass, Lauryn E and Mcinerney, Peter and Thompson, John F and Bowers, Jayson and Jarosz, Mirna and Milos, Patrice M},
title = {{Direct RNA sequencing}},
journal = {Nature},
year = {2009},
volume = {461},
number = {7265},
pages = {814--818},
month = sep
}
@article{Nydam:2011br,
author = {Nydam, Marie L and Nydam, Marie L and Harrison, Richard G},
title = {{Reproductive protein evolution in two cryptic species of marine chordate}},
journal = {BMC Evolutionary Biology},
year = {2011},
volume = {11},
number = {1},
pages = {18},
month = jan
}
@article{Macfarlan:2012js,
author = {Macfarlan, Todd S and Gifford, Wesley D and Driscoll, Shawn and Lettieri, Karen and Rowe, Helen M and Bonanomi, Dario and Firth, Amy and Singer, Oded and Trono, Didier and Pfaff, Samuel L},
title = {{Embryonic stem cell potency fluctuates with endogenous retrovirus activity.}},
journal = {Nature},
year = {2012},
volume = {487},
number = {7405},
pages = {57--63},
month = jul
}
@article{Teixeira:2009ip,
author = {Teixeira, Vitor Hugo and Olaso, Robert and Martin-Magniette, Marie-Laure and Lasbleiz, Sandra and Jacq, Laurent and Oliveira, Catarina Resende and Hilliquin, Pascal and Gut, Ivo and Cornelis, Fran{\c c}ois and Petit-Teixeira, Elisabeth},
title = {{Transcriptome Analysis Describing New Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis Patients}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {8},
pages = {e6803},
month = aug
}
@article{Brown:2002hi,
author = {Brown, James H and Kelt, Douglas A and Fox, Barry J},
title = {{Assembly Rules and Competition in Desert Rodents}},
journal = {The American Naturalist},
year = {2002},
volume = {160},
number = {6},
pages = {815--818},
month = dec
}
@article{Yezerinac:1999wx,
author = {Yezerinac, SM and Gibbs, HL and Briskie, JV and Whittam, R and Montgomerie, R},
title = {{Extrapair paternity in a far northern population of Yellow Warblers Dendroica petechia}},
journal = {Journal of Avian Biology},
year = {1999},
volume = {30},
number = {2},
pages = {234--237}
}
@article{Satta:1994wg,
author = {Satta, Y and OHUigin, C and Takahata, N and Klein, J},
title = {{Intensity of natural selection at the major histocompatibility complex loci.}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {15},
pages = {7184--7188},
month = jul
}
@article{Wang:2013hw,
author = {Wang, Y H and Gu, Z Y and Wang, J M and Sun, S S and Wang, B B and Jin, Y Q and Jin, Y Q and Shen, W D and Li, B},
title = {{Pesticide Biochemistry and Physiology}},
journal = {Pesticide Biochemistry and Physiology},
year = {2013},
volume = {105},
number = {1},
pages = {13--17},
month = jan
}
@article{Banke:2009gw,
author = {Banke, S and Lillemark, M R and Gerstoft, J and Obel, N and Jorgensen, L B},
title = {{Positive Selection Pressure Introduces Secondary Mutations at Gag Cleavage Sites in Human Immunodeficiency Virus Type 1 Harboring Major Protease Resistance Mutations}},
journal = {Journal of Virology},
year = {2009},
volume = {83},
number = {17},
pages = {8916--8924},
month = aug
}
@article{Miller:2004jc,
author = {Miller, Hilary C and Lambert, David M},
title = {{Genetic drift outweighs balancing selection in shaping post-bottleneck major histocompatibility complex variation in New Zealand robins (Petroicidae).}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {12},
pages = {3709--3721},
month = dec
}
@article{Chain:2009hv,
author = {Chain, P S G and Grafham, D V and Fulton, R S and FitzGerald, M G and Hostetler, J and Muzny, D and Ali, J and Birren, B and Bruce, D C and Buhay, C and Cole, J R and Ding, Y and Dugan, S and Field, D and Garrity, G M and Gibbs, R and Graves, T and Han, C S and Harrison, S H and Highlander, S and Hugenholtz, P and Khouri, H M and Kodira, C D and Kolker, E and Kyrpides, N C and Lang, D and Lapidus, A and Malfatti, S A and Markowitz, V and Metha, T and Nelson, K E and Parkhill, J and Pitluck, S and Qin, X and Read, T D and Schmutz, J and Sozhamannan, S and Sterk, P and Strausberg, R L and Sutton, G and Thomson, N R and Tiedje, J M and Weinstock, G and Wollam, A and {Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium} and Detter, J C},
title = {{Genome Project Standards in a New Era of Sequencing}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5950},
pages = {236--237},
month = oct
}
@article{Wegner:2003td,
author = {Wegner, KM and Wegner, KM and Reusch, TBH and Reusch, TBH and Kalbe, M},
title = {{Multiple parasites are driving major histocompatibility complex polymorphism in the wild}},
journal = {Journal of Evolutionary Biology},
year = {2003},
volume = {16},
number = {2},
pages = {224--232}
}
@article{Diochot:2013bz,
author = {Diochot, Sylvie and Diochot, Sylvie and Baron, Anne and Baron, Anne and Salinas, Miguel and Salinas, Miguel and Douguet, Dominique and Douguet, Dominique and Scarzello, Sabine and Scarzello, Sabine and Dabert-Gay, Anne-Sophie and Dabert-Gay, Anne-Sophie and Debayle, Delphine and Debayle, Delphine and Friend, Val{\'e}rie and Friend, Val{\'e}rie and Alloui, Abdelkrim and Alloui, Abdelkrim and Lazdunski, Michel and Lazdunski, Michel and Lingueglia, Eric and Lingueglia, Eric},
title = {{Black mamba venom peptides target acid-sensing ion channels to abolish pain}},
journal = {Nature},
year = {2013},
volume = {490},
number = {7421},
pages = {552--555},
month = apr
}
@article{Hooper:2008bp,
author = {Hooper, P L and Miller, G F},
title = {{Mutual Mate Choice Can Drive Costly Signaling Even Under Perfect Monogamy}},
journal = {Adaptive Behavior},
year = {2008},
volume = {16},
number = {1},
pages = {53--70},
month = feb
}
@article{Dharmarajan:2009ja,
author = {Dharmarajan, Guha and Beasley, James C and Fike, Jennifer A and Rhodes, Olin E},
title = {{Population genetic structure of raccoons (Procyon~lotor) inhabiting a highly fragmented landscape}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2009},
volume = {87},
number = {9},
pages = {814--824},
month = sep
}
@article{Graham:2010ih,
author = {Graham, A L and Hayward, A D and Watt, K A and PILKINGTON, J G and PEMBERTON, J M and Nussey, D H},
title = {{Fitness Correlates of Heritable Variation in Antibody Responsiveness in a Wild Mammal}},
journal = {Science (New York, NY)},
year = {2010},
volume = {330},
number = {6004},
pages = {662--665},
month = oct
}
@article{Cheung:2005co,
author = {Cheung, VG and Cheung, VG and Spielman, RS and Spielman, RS and Ewens, KG and Ewens, KG and Weber, TM and Weber, TM and Morley, M and Morley, M and Burdick, JT and Burdick, JT},
title = {{Mapping determinants of human gene expression by regional and genome-wide association}},
journal = {Nature},
year = {2005},
volume = {437},
number = {7063},
pages = {1365--1369}
}
@article{EBERHARD:2004eo,
author = {Eberhard, William G},
title = {{Malefemale conflict and genitalia: failure to confirm predictions in insects and spiders}},
journal = {Biological Reviews},
year = {1999},
volume = {79},
number = {1},
pages = {121--186}
}
@article{Menard:2008bd,
author = {Menard, Jean-Pierre and Fenollar, Florence and Henry, Mireille and Bretelle, Florence and Raoult, Didier},
title = {{Molecular Quantification of Gardnerella vaginalisand Atopobium vaginaeLoads to Predict Bacterial Vaginosis}},
journal = {Clinical Infectious Diseases},
year = {2008},
volume = {47},
number = {1},
pages = {33--43},
month = jul
}
@article{Zietsch:2011fx,
author = {Zietsch, Brendan P and Verweij, Karin J H and Burri, andrea V},
title = {{HERITABILITY OF PREFERENCES FOR MULTIPLE CUES OF MATE QUALITY IN HUMANS}},
journal = {Evolution},
year = {2011},
pages = {no--no},
month = dec
}
@article{EdlyWright:2007if,
author = {Edly-Wright, Christine and Schwagmeyer, P L and Parker, Patricia G and Mock, Douglas W},
title = {{Genetic similarity of mates, offspring health and extrapair fertilization in house sparrows}},
journal = {Animal Behaviour},
year = {2007},
volume = {73},
number = {2},
pages = {367--378},
month = feb
}
@article{Ohta:1997wc,
author = {Ohta, T},
title = {{The meaning of near-neutrality at coding and non-coding regions}},
journal = {Gene},
year = {1997},
volume = {205},
number = {1-2},
pages = {261--267}
}
@article{Kelly:2012bc,
author = {Kelly, Morgan W and Kelly, Morgan W and GROSBERG, RICHARD K and GROSBERG, RICHARD K and SANFORD, ERIC and SANFORD, ERIC},
title = {{Love the one you're with: proximity determines paternity success in the barnacle Tetraclita rubescens}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {20},
pages = {5088--5097},
month = oct
}
@article{Narum:2013kc,
author = {Narum, Shawn R and Campbell, Nathan R and Meyer, Kevin A and Miller, Michael R and Hardy, Ronald W},
title = {{Thermal adaptation and acclimation of ectotherms from differing aquatic climates.}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {11},
pages = {3090--3097},
month = jun
}
@article{Au:2012iq,
author = {Au, Kin Fai and Underwood, Jason G and Lee, Lawrence and Wong, Wing Hung},
title = {{Improving PacBio Long Read Accuracy by Short Read Alignment}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {10},
pages = {e46679},
month = oct
}
@article{VYNNE:2010dm,
author = {VYNNE, CARLY and VYNNE, CARLY and SKALSKI, JOHN R and SKALSKI, JOHN R and MACHADO, RICARDO B and MACHADO, RICARDO B and GROOM, MARTHA J and GROOM, MARTHA J and J{\'A}COMO, ANAH T A and J{\'A}COMO, ANAH T A and MARINHO-FILHO, JADER and MARINHO-FILHO, JADER and NETO, MARIO B RAMOS and NETO, MARIO B RAMOS and Pomilla, Cristina and Pomilla, Cristina and SILVEIRA, LEANDRO and SILVEIRA, LEANDRO and SMITH, HEATH and SMITH, HEATH and Wasser, Samuel K},
title = {{Effectiveness of Scat-Detection Dogs in Determining Species Presence in a Tropical Savanna Landscape}},
journal = {Conservation Biology},
year = {2010},
volume = {25},
number = {1},
pages = {154--162},
month = oct
}
@article{Ricklefs:2010kt,
author = {Ricklefs, Robert E},
title = {{Parental Investment and Avian Reproductive Rate: Williams{\textquoteright}s Principle Reconsidered}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {3},
pages = {350--361},
month = mar
}
@article{Brennan:2010jx,
author = {Brennan, P L R and Clark, C J and Prum, R O},
title = {{Explosive eversion and functional morphology of the duck penis supports sexual conflict in waterfowl genitalia}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1686},
pages = {1309--1314},
month = mar
}
@article{Waples:2005vg,
author = {Waples, RS},
title = {{Genetic estimates of contemporary effective population size: to what time periods do the estimates apply?}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {11},
pages = {3335--3352}
}
@article{Krakauer:2008eu,
author = {Krakauer, Alan H},
title = {{SEXUAL SELECTION AND THE GENETIC MATING SYSTEM OF WILD TURKEYS}},
journal = {The Condor},
year = {2008},
volume = {110},
number = {1},
pages = {1--12},
month = feb
}
@article{Tomberlin:2011ea,
author = {Tomberlin, Jeffery K and Benbow, M Eric and Tarone, Aaron M and Mohr, Rachel M},
title = {{Basic research in evolution and ecology enhances forensics}},
journal = {Trends In Ecology {\&} Evolution},
year = {2011},
volume = {26},
number = {2},
pages = {53--55},
month = feb
}
@article{Glaubitz:2003to,
author = {Glaubitz, JC and Rhodes, OE and DeWoody, JA},
title = {{Prospects for inferring pairwise relationships with single nucleotide polymorphisms}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {4},
pages = {1039--1047}
}
@article{Mainguy:2009cf,
author = {Mainguy, Julien and Cote, Steeve D and Coltman, David W},
title = {{Multilocus heterozygosity, parental relatedness and individual fitness components in a wild mountain goat, Oreamnos americanuspopulation}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {10},
pages = {2297--2306},
month = may
}
@article{ElMetwally:2013bk,
author = {El-Metwally, Sara and Hamza, Taher and Zakaria, Magdi and Helmy, Mohamed},
title = {{Next-Generation Sequence Assembly: Four Stages of Data Processing and Computational Challenges}},
journal = {PLOS Computational Biology},
year = {2013},
volume = {9},
number = {12},
pages = {e1003345},
month = dec
}
@article{RE:1969uk,
author = {RE, CARPENTE},
title = {{Structure and Function of Kidney and Water Balance of Desert Bats}},
journal = {Physiological Zoology},
year = {1969},
volume = {42},
number = {3},
pages = {288--{\&}}
}
@article{Ronen:2013jm,
author = {Ronen, R and Udpa, N and Halperin, E and Bafna, V},
title = {{Learning Natural Selection from the Site Frequency Spectrum}},
journal = {Genetics},
year = {2013},
volume = {195},
number = {1},
pages = {181--193},
month = sep
}
@article{Yanagawa:2011bf,
author = {Yanagawa, Aya and Yanagawa, Aya and Fujiwara-Tsujii, Nao and Fujiwara-Tsujii, Nao and Akino, Toshiharu and Akino, Toshiharu and Yoshimura, Tsuyoshi and Yoshimura, Tsuyoshi and Yanagawa, Takashi and Yanagawa, Takashi and Shimizu, Susumu and Shimizu, Susumu},
title = {{Behavioral changes in the termite, Coptotermes formosanus (Isoptera), inoculated with six fungal isolates}},
journal = {Journal of Invertebrate Pathology},
year = {2011},
volume = {107},
number = {2},
pages = {100--106},
month = jun
}
@article{Ribble:1991wl,
author = {Ribble, David O and Ribble, David O},
title = {{The monogamous mating system of \emph{\textit{Peromyscus} \textit{californicus}} as revealed by DNA fingerprinting}},
journal = {Behavioral Ecology and Sociobiology},
year = {1991},
volume = {29},
number = {3},
pages = {161--166}
}
@article{Vieira:2010ic,
author = {Vieira, J and Vieira, C P},
title = {{On the identification of human selected loci in grapevines}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {4},
pages = {327--328},
month = dec
}
@article{Wilson:2007fe,
author = {Wilson, A B and Martin-Smith, K M},
title = {{Genetic monogamy despite social promiscuity in the pot-bellied seahorse (\textit{Hippocampus abdominalis})}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {11},
pages = {2345--2352},
month = jun
}
@article{Du:2009ks,
author = {DU, B O and Lu, Xin},
title = {{Bi-parental vs. cooperative breeding in a passerine: fitness-maximizing strategies of males in response to risk of extra-pair paternity?}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {18},
pages = {3929--3939},
month = sep
}
@article{Kim:2010bz,
author = {Kim, Y and Gulisija, D},
title = {{Signatures of Recent Directional Selection Under Different Models of Population Expansion During Colonization of New Selective Environments}},
journal = {Genetics},
year = {2010},
volume = {184},
number = {2},
pages = {571--585},
month = jan
}
@article{Albert:2011dk,
author = {Albert, F W and Hodges, E and Jensen, J D and Besnier, F and Xuan, Z and Rooks, M and Bhattacharjee, A and Brizuela, L and Good, J M and Green, R E and Burbano, H A and Plyusnina, I Z and Trut, L and andersson, L and Schoneberg, T and Carlborg, O and Hannon, G J and Paabo, S},
title = {{Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection.}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {3},
pages = {205--214},
month = sep
}
@article{Pechacek:2005wz,
author = {Pechacek, P and Michalek, KG and Winkler, H and Blomqvist, D},
title = {{Monogamy with exceptions: Social and genetic mating system in a bird species with high paternal investment}},
journal = {Behaviour},
year = {2005},
volume = {142},
pages = {1093--1114}
}
@article{Guisan:2005gz,
author = {Guisan, Antoine and Thuiller, Wilfried},
title = {{Predicting species distribution: offering more than simple habitat models}},
journal = {Ecology Letters},
year = {2005},
volume = {8},
number = {9},
pages = {993--1009},
month = sep
}
@article{Krawitz:2010iqa,
author = {Krawitz, P and Rodelsperger, C and Jager, M and Jostins, L and Bauer, S and Robinson, P N},
title = {{Microindel detection in short-read sequence data}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {6},
pages = {722--729},
month = mar
}
@article{Favre:1997tr,
author = {Favre, L and Balloux, F and Goudet, J and Perrin, N},
title = {{Female-biased dispersal in the monogamous mammal Crocidura russula: Evidence from field data and microsatellite patterns}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1378},
pages = {127--132}
}
@article{Kappeler:2008ef,
author = {Kappeler, Peter M and Port, Markus},
title = {{Mutual tolerance or reproductive competition? Patterns of reproductive skew among male redfronted lemurs (Eulemur fulvus rufus)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {9},
pages = {1477--1488},
month = apr
}
@article{SHEPARD:1971wc,
author = {SHEPARD, J},
title = {{FACTORS INFLUENCING NON-RANDOM MATING IN RUFF (PHILOMACHUS-PUGNAX)}},
journal = {American Zoologist},
year = {1971},
volume = {11},
number = {4},
pages = {624--{\&}}
}
@article{Gonzalez:2009gb,
author = {Gonzalez, J and Macpherson, J M and Messer, P W and Petrov, D A},
title = {{Inferring the Strength of Selection in \textit{Drosophila} under Complex Demographic Models}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {26},
number = {3},
pages = {513--526},
month = dec
}
@article{Dennehy:2001tv,
author = {Dennehy, JJ},
title = {{Influence of social dominance rank on diet quality of pronghorn females}},
journal = {Behavioral Ecology},
year = {2001},
volume = {12},
number = {2},
pages = {177--181}
}
@article{Chapman:2012cn,
author = {Chapman, Stephen J and Hill, Adrian V S},
title = {{Human genetic susceptibility to infectious disease}},
journal = {Nature Reviews Genetics},
year = {2012},
volume = {13},
number = {3},
pages = {175--188},
month = feb
}
@article{Charmantier:2003ts,
author = {Charmantier, A and BLONDEL, J},
title = {{A contrast in extra-pair paternity levels on mainland island populations of mediterranean blue tits}},
journal = {Ethology},
year = {2003},
volume = {109},
number = {4},
pages = {351--363}
}
@article{Anonymous:2003gz,
title = {{Allele substitution at a flower colour locus produces a pollinator shift in monkeyflowers}},
year = {2003},
pages = {1--3},
month = nov
}
@article{Smith:2013kk,
author = {Smith, Brian Tilston and Harvey, Michael G and Faircloth, Brant C and Glenn, Travis C and Brumfield, Robb T},
title = {{Target Capture and Massively Parallel Sequencing of Ultraconserved Elements (UCEs) for Comparative Studies at Shallow Evolutionary Time Scales.}},
journal = {Systematic Biology},
year = {2013},
month = sep
}
@article{Morris:1997tk,
author = {Morris, Martina and Kretzschmar, Mirjam},
title = {{Concurrent partnerships and the spread of HIV}},
journal = {Aids},
year = {1997},
volume = {11},
number = {5},
pages = {641--648}
}
@article{Awata:2008jo,
author = {Awata, Satoshi and Takeyama, Tomohiro and Makino, Yoshimi and Kitamura, Yuko and Kohda, Masanori},
title = {{Cooperatively breeding cichlid fish adjust their testis size but not sperm traits in relation to sperm competition risk}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {11},
pages = {1701--1710},
month = may
}
@inproceedings{Legato:2003cd,
author = {Legato, J and Legato, J and Knepper, MA and Knepper, MA and Star, RA and Star, RA and Mejia, R and Mejia, R},
title = {{Database for renal collecting duct regulatory and transporter proteins}},
booktitle = {Physiological Genomics},
year = {2003},
pages = {179--181},
organization = {NIDDKD, Math Res Branch, NIH, Bethesda, MD 20892 USA}
}
@article{Ballingall:1997uu,
author = {Ballingall, KT and Luyai, A and McKeever, DJ},
title = {{Analysis of genetic diversity at the DQA loci in African cattle: Evidence for a BoLA-DQA3 locus}},
journal = {Immunogenetics},
year = {1997},
volume = {46},
number = {3},
pages = {237--244}
}
@article{Xiao:2013hl,
author = {Xiao, Jin-Hua and Yue, Zhen and Jia, Ling-Yi and Yang, Xin-Hua and Niu, Li-Hua and Wang, Zhuo and Zhang, Peng and Sun, Bao-Fa and He, Shun-Min and Li, Zi and Xiong, Tuan-Lin and Xin, Wen and Gu, Hai-Feng and Wang, Bo and Werren, John H and Murphy, Robert W and Wheeler, David and Niu, Li-Ming and Ma, Guang-Chang and Tang, Ting and Bian, Sheng-Nan and Wang, Ning-Xin and Yang, Chun-Yan and Wang, Nan and Fu, Yue-Guan and Li, Wen-Zhu and Yi, Soojin V and Yang, Xing-Yu and Zhou, Qing and Lu, Chang-Xin and Xu, Chun-Yan and He, Li-Juan and Yu, Li-Li and Chen, Ming and Zheng, Yuan and Wang, Shao-Wei and Zhao, Shuang and Li, Yan-Hong and Yu, Yang-Yang and Qian, Xiao-Ju and Cai, Yue and Bian, Lian-Le and Zhang, Shu and Wang, Jun-Yi and Yin, Ye and Xiao, Hui and Wang, Guan-Hong and Yu, Hui and Wu, Wen-Shan and Cook, James M and Wang, Jun and Huang, Da-Wei},
title = {{Obligate mutualism within a host drives the extreme specialization of a fig wasp genome}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {12},
pages = {R141}
}
@article{THORNHILL:1983vi,
author = {THORNHILL, R and THORNHILL, NW},
title = {{HUMAN RAPE - AN EVOLUTIONARY ANALYSIS}},
journal = {Ethology and Sociobiology},
year = {1983},
volume = {4},
number = {3},
pages = {137--173}
}
@article{Fraser:1996un,
author = {Fraser, DG and Bailey, E},
title = {{Demonstration of three DRB loci in a domestic horse family}},
journal = {Immunogenetics},
year = {1996},
volume = {44},
number = {6},
pages = {441--445}
}
@article{Barr:2004jn,
author = {Barr, Alasdair M and Young, Clint E and Sawada, Ken and Trimble, William S and Phillips, Anthony G and Honer, William G},
title = {{Abnormalities of presynaptic protein CDCrel-1 in striatum of rats reared in social isolation: relevance to neural connectivity in schizophrenia}},
journal = {The European journal of neuroscience},
year = {2004},
volume = {20},
number = {1},
pages = {303--307},
month = jul
}
@article{Chikhi:2008fq,
author = {Chikhi, L},
title = {{Genetic markers: How accurate can genetic data be?}},
journal = {Heredity},
year = {2008},
volume = {101},
number = {6},
pages = {471--472},
month = oct
}
@article{Weatherhead:1979tq,
author = {Weatherhead, PJ and Robertson, RJ},
title = {{OFFSPRING QUALITY AND THE POLYGYNY THRESHOLD - SEXY SON HYPOTHESIS}},
journal = {The American Naturalist},
year = {1979},
volume = {113},
number = {2},
pages = {201--208}
}
@article{Nachman:2003gl,
author = {Nachman, Michael W and Hoekstra, HE and D'Agostino, SL},
title = {{The genetic basis of adaptive melanism in pocket mice}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2003},
volume = {100},
number = {9},
pages = {5268--5273}
}
@article{Pryke:2009kq,
author = {Pryke, S R and Griffith, S C},
title = {{Genetic Incompatibility Drives Sex Allocation and Maternal Investment in a Polymorphic Finch}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5921},
pages = {1605--1607},
month = mar
}
@article{Dunn:2009cz,
author = {Dunn, Peter O and Lifjeld, Jan T and Whittingham, Linda A},
title = {{Multiple paternity and offspring quality in tree swallows}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {6},
pages = {911--922},
month = mar
}
@article{Mallick:2009go,
author = {Mallick, S and Gnerre, S and Muller, P and Reich, D},
title = {{The difficulty of avoiding false positives in genome scans for natural selection}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {5},
pages = {922--933},
month = may
}
@article{Techen:2010fv,
author = {Techen, Natascha and Arias, Renee S and Glynn, Neil C and Pan, Zhiqiang and Khan, Ikhlas A and Scheffler, Brian E},
title = {{Optimized construction of microsatellite-enriched libraries}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {3},
pages = {508--515},
month = may
}
@article{Kempenaers:1992uh,
author = {Kempenaers, B and Verheyen, G and Verheyen, G and Van den Broeck, M and Van den Broeck, M and Burke, T and Van Broekhoven, C and Van Broekhoven, C and Dhondt, A A and Dhondt, A A},
title = {{Extra-Pair Paternity Results From Female Preference for High-Quality Males in the Blue Tit}},
journal = {Nature},
year = {1992},
volume = {357},
number = {6378},
pages = {494--496}
}
@article{Kretzschmar:1996vm,
author = {Kretzschmar, M and Morris, M},
title = {{Measures of concurrency in networks and the spread of infectious disease}},
journal = {Mathematical Biosciences},
year = {1996},
volume = {133},
number = {2},
pages = {165--195}
}
@article{Pilastro:2002ij,
author = {Pilastro, A},
title = {{Individual adjustment of sperm expenditure accords with sperm competition theory}},
journal = {Proceedings of the National Academy of Sciences},
year = {2002},
volume = {99},
number = {15},
pages = {9913--9915},
month = jul
}
@article{Schmidt:2008kt,
author = {Schmidt, J I and Hundertmark, K J and Bowyer, R T and Mccracken, K G},
title = {{Population Structure and Genetic Diversity of Moose in Alaska}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {2},
pages = {170--180},
month = feb
}
@article{Ferretti:2012fu,
author = {Ferretti, L and Raineri, E and Raineri, E and Ramos-Onsins, S and Ramos-Onsins, S},
title = {{Neutrality Tests for Sequences with Missing Data}},
journal = {Genetics},
year = {2012},
volume = {191},
number = {4},
pages = {1397--1401},
month = aug
}
@article{SLADE:1994ut,
author = {SLADE, RW and HALE, PT and FRANCIS, DI and FRANCIS, DI and GRAVES, JAM and GRAVES, JAM and STURM, RA and STURM, RA},
title = {{THE MARSUPIAL MHC - THE TAMMAR WALLABY, MACROPUS-EUGENII, CONTAINS AN EXPRESSED DNA-LIKE GENE ON CHROMOSOME}},
journal = {Journal of Molecular Evolution},
year = {1994},
volume = {38},
number = {5},
pages = {496--505}
}
@article{Slate:2009fw,
author = {Slate, Jon},
title = {{Bias in studies of heterozygosity and mate choice}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {9},
pages = {1815--1817},
month = may
}
@article{Etschmann:2006vo,
author = {Etschmann, B and Wilcken, B and Stoevesand, K and von der Schulenburg, A and Sterner-Kock, A},
title = {{Selection of reference genes for quantitative real-time PCR analysis in canine mammary tumors using the GeNorm algorithm}},
journal = {Veterinary Pathology},
year = {2006},
volume = {43},
number = {6},
pages = {934--942}
}
@article{Gregersen:2009jg,
author = {Gregersen, Peter K},
title = {{Closing the gap between genotype and phenotype}},
journal = {Nature Genetics},
year = {2009},
volume = {41},
number = {9},
pages = {958--959},
month = sep
}
@article{Parker:2006tl,
author = {Parker, G},
title = {{Sexual conflict over mating and fertilization: an overview}},
journal = {{\ldots} Transactions of the Royal Society B: {\ldots}},
year = {2006}
}
@article{CluttonBrock:2009dc,
author = {Clutton-Brock, T},
title = {{Structure and function in mammalian societies}},
journal = {Philosophical Transactions of The Royal Society B-Biological Sciences},
year = {2009},
volume = {364},
number = {1533},
pages = {3229--3242},
month = oct
}
@article{Double:2000vm,
author = {Double, M and Cockburn, A},
title = {{Pre-dawn infidelity: females control extra-pair mating in superb fairy-wrens}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1442},
pages = {465--470}
}
@article{Nonacs:2007dz,
journal = {Evolution},
year = {2007},
volume = {61},
number = {5},
month = may
}
@article{Cavatorta:2008iu,
author = {Cavatorta, J R and Savage, A E and Yeam, I and Gray, S M and Jahn, M M},
title = {{Positive Darwinian Selection at Single Amino Acid Sites Conferring Plant Virus Resistance}},
journal = {Journal of Molecular Evolution},
year = {2008},
volume = {67},
number = {5},
pages = {551--559},
month = oct
}
@article{Gering:2009im,
author = {Gering, E J and Opazo, J C and Storz, J F},
title = {{Molecular evolution of cytochrome b in high- and low-altitude deer mice (genus \textit{Peromyscus})}},
journal = {Heredity},
year = {2008},
volume = {102},
number = {3},
pages = {226--235},
month = dec
}
@article{Ma:2010dg,
author = {Ma, Ronald C W},
title = {{Genetic variants of the protein kinase C-beta 1 gene and development of end-stage renal disease in patients with type 2 diabetes}},
year = {2010},
volume = {304},
number = {8},
pages = {881--889},
month = aug
}
@article{Heisenberg:2009bu,
author = {Heisenberg, Martin},
title = {{Is free will an illusion?}},
journal = {Nature},
year = {2009},
volume = {459},
number = {7244},
pages = {164--165},
month = may
}
@article{Rowe:2011kl,
author = {Rowe, Kevin C and Singhal, Sonal and \textbf{MacManes}, Matthew D and Ayroles, Julien F and Morelli, Toni Lyn and Rubidge, Emily M and Bi, Ke and Moritz, Craig C},
title = {{Museum genomics: low-cost and high-accuracy genetic data from historical specimens.}},
journal = {Molecular Ecology Resources},
year = {2011},
volume = {11},
number = {6},
pages = {1082--1092},
month = jul
}
@article{LANDGUTH:2011uq,
author = {LANDGUTH, E.L. and FEDY, B.C. and OYLER McCANCE, S. and GAREY, A.L. and EMEL, S.L. and MUMMA, M. and WAGNER, H.H. and FORTIN, M.J. and CUSHMAN, S.A.},
title = {{Effects of sample size, number of markers, and allelic richness on the detection of spatial genetic pattern}},
journal = {Molecular Ecology Resources},
year = {2011}
}
@article{Hohenlohe:2010eu,
author = {Hohenlohe, P A and Arnold, S J},
title = {{Dimensionality of mate choice, sexual isolation, and speciation}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {38},
pages = {16583--16588},
month = sep
}
@article{Delgado:2008bc,
author = {Delgado, Rodrigo and Fernandez-Llario, Pedro and Azevedo, Marisa and Beja-Pereira, Albano and Santos, Pedro},
title = {{Paternity assessment in free-ranging wild boar (Sus scrofa) {\textendash} Are littermates full-sibs?}},
journal = {Mammalian Biology - Zeitschrift fur Saugetierkunde},
year = {2008},
volume = {73},
number = {3},
pages = {169--176},
month = may
}
@article{Gadau:1996wg,
author = {Gadau, J and Heinze, J and Holldobler, B and Schmid, M},
title = {{Population and colony structure of the carpenter ant Camponotus floridanus}},
journal = {Molecular Ecology},
year = {1996},
volume = {5},
number = {6},
pages = {785--792}
}
@article{Griffith:2000vl,
author = {Griffith, SC},
title = {{High fidelity on islands: a comparative study of extrapair paternity in passerine birds}},
journal = {Behavioral Ecology},
year = {2000},
volume = {11},
number = {3},
pages = {265--273}
}
@article{Anonymous:jLsv-Adb,
author = {Wright, Lucy I and Fuller, Wayne J and Godley, Brendan J and McGowan, andrew and Tregenza, Tom and Broderick, Annette C},
title = {{Reconstruction of paternal genotypes over multiple breeding seasons reveals male green turtles do not breed annually.}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {14},
pages = {3625--3635},
month = jul
}
@article{Burke:2011ch,
author = {Burke, Catherine and Burke, Catherine and Thomas, Torsten and Thomas, Torsten and Lewis, Matt and Lewis, Matt and Steinberg, Peter and Steinberg, Peter and Kjelleberg, Staffan},
title = {{Composition, uniqueness and variability of the epiphytic bacterial community of the green alga Ulva australis.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {4},
pages = {590--600},
month = apr
}
@article{Gavasa:2012ja,
author = {Gavasa, Sat and Silva, Ana C and Gonzalez, Emmanuel and Molina, Juan and Stoddard, Philip K},
title = {{Social competition masculinizes the communication signals of female electric fish}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
volume = {66},
number = {7},
pages = {1057--1066},
month = apr
}
@article{Keller:1996vv,
author = {Keller, L and LHoste, G and LHoste, G and Balloux, F and Plumey, O and Plumey, O},
title = {{Queen number influences the primary sex ratio in the Argentine ant, Linepithema humile (=Iridomyrmex humilis)}},
journal = {Animal Behaviour},
year = {1996},
volume = {51},
pages = {445--449}
}
@article{MacManes:2012bu,
author = {\textbf{MacManes}, Matthew D and Lacey, Eileen A},
title = {{The Social Brain: Transcriptome Assembly and Characterization of the Hippocampus from a Social Subterranean Rodent, the Colonial Tuco-Tuco (\textit{Ctenomys} \textit{sociabilis})}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {9},
pages = {e45524},
month = sep
}
@article{Rusk:2009th,
author = {Rusk, Nicole and Rusk, Nicole},
title = {{Focus on next-generation sequencing data analysis. Forward}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {11 Suppl},
pages = {S1},
month = nov
}
@article{Mokkonen:2011hi,
author = {Mokkonen, M and Mokkonen, M and Kokko, H and Koskela, E and Koskela, E and Lehtonen, J and Lehtonen, J and Mappes, T and Mappes, T and Martiskainen, H and Martiskainen, H and Mills, S C and Mills, S C},
title = {{Negative Frequency-Dependent Selection of Sexually Antagonistic Alleles in Myodes glareolus}},
journal = {Science (New York, NY)},
year = {2011},
volume = {334},
number = {6058},
pages = {972--974},
month = nov
}
@article{SIGAL:1982tt,
author = {SIGAL, MD and SIGAL, MD and ARLIAN, LG and ARLIAN, LG},
title = {{Water-Balance of the Social Insect Formica-Exsectoides (Hymenoptera, Formicidae) and Its Ecological Implications}},
journal = {Physiological Zoology},
year = {1982},
volume = {55},
number = {4},
pages = {355--366}
}
@article{Ursenbacher:2009jj,
author = {Ursenbacher, S and Erny, C and Fumagalli, L},
title = {{Male Reproductive Success and Multiple Paternity in Wild, Low-Density Populations of the Adder (Vipera berus)}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {3},
pages = {365--370},
month = mar
}
@article{Sella:2009hs,
author = {Sella, Guy and Petrov, Dmitri A and Przeworski, Molly and andolfatto, Peter},
title = {{Pervasive Natural Selection in the \textit{Drosophila} Genome?}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {6},
pages = {e1000495},
month = jun
}
@article{Edvardsson:2008jx,
author = {Edvardsson, M and Hunt, J and Moore, P J and Moore, A J},
title = {{Female agreement over male attractiveness is not affected by cost of mating with experienced males}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {4},
pages = {854--859},
month = jul
}
@article{Fuxjager:2010km,
author = {Fuxjager, Matthew J and Montgomery, Jon L and Becker, Elizabeth A and Marler, Catherine A},
title = {{Deciding to win: interactive effects of residency, resources and {\textquoteleft}boldness{\textquoteright} on contest outcome in white-footed mice}},
journal = {Animal Behaviour},
year = {2010},
volume = {80},
number = {5},
pages = {921--927},
month = nov
}
@article{Csencsics:2010du,
author = {Csencsics, D and Brodbeck, S and Holderegger, R},
title = {{Cost-Effective, Species-Specific Microsatellite Development for the Endangered Dwarf Bulrush (Typha minima) Using Next-Generation Sequencing Technology}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {6},
pages = {789--793},
month = oct
}
@article{Hansen:2010if,
author = {Hansen, Kasper D and Brenner, Steven E and Dudoit, Sandrine},
title = {{Biases in Illumina transcriptome sequencing caused by random hexamer priming}},
journal = {Nucleic Acids Research},
year = {2010},
volume = {38},
number = {12},
pages = {e131--e131},
month = jul
}
@article{KOPCZYNSKI:1994wn,
author = {KOPCZYNSKI, ED and KOPCZYNSKI, ED and BATESON, MM and BATESON, MM and WARD, DM and WARD, DM},
title = {{RECOGNITION OF CHIMERIC SMALL-SUBUNIT RIBOSOMAL DNAS COMPOSED OF GENES FROM UNCULTIVATED MICROORGANISMS}},
journal = {Applied and Environmental Microbiology},
year = {1994},
volume = {60},
number = {2},
pages = {746--748}
}
@article{Ghazalpour:2011kj,
author = {Ghazalpour, Anatole and Bennett, Brian and Petyuk, Vladislav A and Orozco, Luz and Hagopian, Raffi and Mungrue, Imran N and Farber, Charles R and Sinsheimer, Janet and Kang, Hyun M and Furlotte, Nicholas and Park, Christopher C and Wen, Ping-Zi and Brewer, Heather and Weitz, Karl and Camp, David G and Pan, Calvin and Yordanova, Roumyana and Neuhaus, Isaac and Tilford, Charles and Siemers, Nathan and Gargalovic, Peter and Eskin, Eleazar and Kirchgessner, Todd and Smith, Desmond J and Smith, Richard D and Lusis, Aldons J},
title = {{Comparative Analysis of Proteome and Transcriptome Variation in Mouse}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {6},
pages = {e1001393},
month = jun
}
@article{Obbard:2009ex,
author = {Obbard, Darren J and Welch, John J and Little, Tom J},
title = {{Inferring selection in the Anopheles gambiae species complex: an example from immune-related serine protease inhibitors}},
journal = {Malaria Journal},
year = {2009},
volume = {8},
number = {1},
pages = {117}
}
@article{Walsh:2006vh,
author = {Walsh, Carolyn J and Wilhelm, Sabina I and Cameron-Macmillan, Maureen L and Storey, Anne E},
title = {{Extra-pair copulations in common murres I: a mate attraction strategy?}},
journal = {Behaviour},
year = {2006},
volume = {143},
pages = {1241--1262}
}
@article{HILL:1991ti,
author = {Guirao-Rico, S and HILL, WL and Aguade, M},
title = {{CORRELATES OF MALE MATING SUCCESS IN THE RUFF PHILOMACHUS-PUGNAX, A LEKKING SHOREBIRD}},
journal = {Behavioral Ecology and Sociobiology},
year = {1991},
volume = {29},
number = {5},
pages = {367--372}
}
@article{deAyala:2007hl,
author = {de Ayala, R M and Saino, N and Moller, A P and Anselmi, C},
title = {{Mouth coloration of nestlings covaries with offspring quality and influences parental feeding behavior}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {3},
pages = {526--534},
month = mar
}
@article{Lappan:2007kw,
author = {Lappan, Susan},
title = {{Social Relationships among Males in Multimale Siamang Groups}},
journal = {International Journal of Primatology},
year = {2007},
volume = {28},
number = {2},
pages = {369--387},
month = may
}
@article{Lackey:1996vc,
author = {Lackey, JA},
title = {{Chaetodipus fallax}},
journal = {Mammalian Species},
year = {1996},
pages = {1--6}
}
@article{SCOTT:1991tg,
author = {SCOTT, PC and MADDOX, JF and GOGOLINEWENS, KJ and BRANDON, MR},
title = {{THE NUCLEOTIDE-SEQUENCE AND EVOLUTION OF OVINE MHC CLASS-II B-GENES - DQB AND DRB}},
journal = {Immunogenetics},
year = {1991},
volume = {34},
number = {2},
pages = {80--87}
}
@article{User:2012em,
author = {User, Production},
title = {{evo_1574_LR}},
year = {2012},
pages = {1--12},
month = feb
}
@article{Parker:1998vp,
author = {Parker, PG and Snow, AA and Schug, MD and Booton, GC and Fuerst, PA and Fuerst, PA},
title = {{What molecules can tell us about populations: Choosing and using a molecular marker}},
journal = {Ecology},
year = {1998},
volume = {79},
number = {2},
pages = {361--382}
}
@article{Cantoni:1997vv,
author = {Cantoni, D and Brown, RE},
title = {{Paternal investment and reproductive success in the California mouse, \textit{Peromyscus} \textit{californicus}}},
journal = {Animal Behaviour},
year = {1997},
volume = {54},
pages = {377--386}
}
@article{Hayes:2006uo,
author = {Hayes, Matthew A and Britten, Hugh B and Barzen, Jeb A},
title = {{Extra-pair fertilizations in Sandhill Cranes revealed using microsatellite DNA markers}},
journal = {The Condor},
year = {2006},
volume = {108},
number = {4},
pages = {970--976}
}
@article{CLUTTONBROCK:1995tf,
author = {Clutton-Brock, TH and Parker, G A and Parker, G A},
title = {{Sexual Coercion in Animal Societies}},
journal = {Animal Behaviour},
year = {1995},
volume = {49},
pages = {1345--1365},
month = feb
}
@article{Rasmussen:2010ht,
author = {Rasmussen, Morten and Li, Yingrui and Lindgreen, Stinus and Pedersen, Jakob Skou and Albrechtsen, anders and Moltke, Ida and Metspalu, Mait and Metspalu, Ene and Kivisild, Toomas and Gupta, Ramneek and Bertalan, Marcelo and Nielsen, Kasper and Gilbert, M Thomas P and Wang, Yong and Raghavan, Maanasa and Campos, Paula F and Kamp, Hanne Munkholm and Wilson, andrew S and Gledhill, andrew and Tridico, Silvana and Bunce, Michael and Lorenzen, Eline D and Binladen, Jonas and Guo, Xiaosen and Zhao, Jing and Zhang, Xiuqing and Zhang, Hao and Li, Zhuo and Chen, Minfeng and Orlando, Ludovic and Kristiansen, Karsten and Bak, Mads and Tommerup, Niels and Bendixen, Christian and Pierre, Tracey L and Gronnow, Bjarne and Meldgaard, Morten and andreasen, Claus and Fedorova, Sardana A and Osipova, Ludmila P and Higham, Thomas F G and Ramsey, Christopher Bronk and Hansen, Thomas V O and Nielsen, Finn C and Crawford, Michael H and Brunak, Soren and Sicheritz-Ponten, Thomas and Villems, Richard and Nielsen, Rasmus and Krogh, anders and Wang, Jun and Willerslev, Eske},
title = {{Ancient human genome sequence of an extinct Palaeo-Eskimo}},
journal = {Nature},
year = {2010},
volume = {463},
number = {7282},
pages = {757--762},
month = feb
}
@article{Dean:2009bka,
author = {Dean, M D and Clark, N L and Findlay, G D and Karn, R C and Yi, X and Swanson, W J and Maccoss, M J and NACHMAN, M W},
title = {{Proteomics and Comparative Genomic Investigations Reveal Heterogeneity in Evolutionary Rate of Male Reproductive Proteins in Mice (Mus domesticus)}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {8},
pages = {1733--1743},
month = jul
}
@article{Woolfenden:2002et,
author = {Woolfenden, Bonnie and Gibbs, Lisle and Sealy, Spencer},
title = {{High opportunity for sexual selection in both sexes of an obligate brood parasitic bird, the brown-headed cowbird ( Molothrus ater )}},
journal = {Behavioral Ecology and Sociobiology},
year = {2002},
volume = {52},
number = {5},
pages = {417--425},
month = oct
}
@article{Aceto:2007de,
author = {Aceto, Serena and Montieri, Stefania and Sica, Maria and Gaudio, Luciano},
title = {{Molecular evolution of the OrcPI locus in natural populations of Mediterranean orchids}},
journal = {Gene},
year = {2007},
volume = {392},
number = {1-2},
pages = {299--305},
month = may
}
@article{Brook:2005hs,
author = {Brook, Itzhak},
title = {{The role of bacterial interference in otitis, sinusitis and tonsillitis.}},
journal = {Otolaryngology--head and neck surgery : official journal of American Academy of Otolaryngology-Head and Neck Surgery},
year = {2005},
volume = {133},
number = {1},
pages = {139--146},
month = jul
}
@article{Pontes:2007bi,
author = {Pontes, Daniela Santos and Pontes, Daniela Santos and Lima-Bittencourt, Cl{\'a}udia Iracema and Lima-Bittencourt, Cl{\'a}udia Iracema and Chartone-Souza, Edmar and Chartone-Souza, Edmar and Amaral Nascimento, andr{\'e}a Maria and Amaral Nascimento, andr{\'e}a Maria},
title = {{Molecular approaches: advantages and artifacts in assessing bacterial diversity.}},
journal = {Journal of industrial microbiology {\&} biotechnology},
year = {2007},
volume = {34},
number = {7},
pages = {463--473},
month = jul
}
@article{Anonymous:yzcoGWoP,
author = {Hadjidoukas, P E and Dimakopoulos, V V},
title = {{Nested parallelism in the OMPI OpenMP/C compiler}},
journal = {Euro-Par 2007 Parallel Processing},
year = {2007}
}
@article{Lucia:2008hy,
author = {Lucia, K E and Keane, B and Hayes, L D and Lin, Y K and Schaefer, R L and Solomon, N G},
title = {{Philopatry in prairie voles: an evaluation of the habitat saturation hypothesis}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {4},
pages = {774--783},
month = jul
}
@article{Fischer:2008kr,
author = {Fischer, K and Perlick, J and Galetz, T},
title = {{Residual reproductive value and male mating success: older males do better}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1642},
pages = {1517--1524},
month = jul
}
@article{SMITH:2013jk,
author = {Smith, Gilbert and Fang, Yongxiang and Liu, Xuan and Liu, Xuan and Kenny, John and Kenny, John and Cossins, andrew R and de Oliveira, Cassia Cardoso and de Oliveira, Cassia Cardoso and Etges, William J and Ritchie, Michael G},
title = {{Transcriptome-wide expression variation associated with environmental plasticity and mating success in cactophilic \textit{Drosophila} mojavensis}},
journal = {Evolution},
year = {2013},
pages = {n/a--n/a},
month = feb
}
@article{Byers:2006co,
author = {Byers, J A and Waits, L},
title = {{Good genes sexual selection in nature}},
journal = {PNAS},
year = {2006},
volume = {103},
number = {44},
pages = {16343--16345},
month = oct
}
@article{Gallardo:2005fm,
author = {Gallardo, Pedro A and Cort{\'e}s, Arturo and Bozinovic, Francisco},
title = {{Phenotypic flexibility at the molecular and organismal level allows desert-dwelling rodents to cope with seasonal water availability.}},
journal = {Physiological and Biochemical Zoology},
year = {2005},
volume = {78},
number = {2},
pages = {145--152},
month = mar
}
@article{Briggs:2009dp,
author = {Briggs, A W and Good, J M and Green, R E and Krause, J and Maricic, T and Stenzel, U and Lalueza-Fox, C and Rudan, P and Brajkovic, D and Kucan, Z and Gusic, I and Schmitz, R and Doronichev, V B and Golovanova, L V and de la Rasilla, M and Fortea, J and Rosas, A and Paabo, S},
title = {{Targeted Retrieval and Analysis of Five Neandertal mtDNA Genomes}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5938},
pages = {318--321},
month = jul
}
@article{Marin:2012bw,
author = {Marin, Juan C and Marin, Juan C and Gonz{\'a}lez, Benito A and Gonz{\'a}lez, Benito A and Poulin, Elie and Poulin, Elie and Casey, Ciara S and Casey, Ciara S and Johnson, Warren E},
title = {{The influence of the arid andean high plateau on the phylogeography and population genetics of guanaco ( Lama guanicoe) in South America}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = dec
}
@article{Lin:2011kd,
author = {Lin, Yong and Lin, Yong and Li, Jian and Li, Jian and Shen, Hui and Shen, Hui and Zhang, Lei and Zhang, Lei and Papasian, Christopher J and Deng, Hong-Wen},
title = {{Comparative studies of \textit{de novo} assembly tools for next-generation sequencing technologies.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {15},
pages = {2031--2037},
month = aug
}
@article{Mathews:2003ta,
author = {Mathews, LM},
title = {{Tests of the mate-guarding hypothesis for social monogamy: male snapping shrimp prefer to associate with high-value females}},
journal = {Behavioral Ecology},
year = {2003},
volume = {14},
number = {1},
pages = {63--67}
}
@article{Mcfarlane:2009ju,
author = {Mcfarlane, M L and Evans, M R and Feldheim, K A and Preault, M and Bowie, R C K and Cherry, M I},
title = {{Long tails matter in sugarbirds--positively for extrapair but negatively for within-pair fertilization success}},
journal = {Behavioral Ecology},
year = {2009},
volume = {21},
number = {1},
pages = {26--32},
month = dec
}
@article{Steijger:2013cv,
author = {Steijger, Tamara and Abril, Josep F and Engstr{\"o}m, P{\"a}r G and Kokocinski, Felix and Akerman, Martin and Alioto, Tyler and Ambrosini, Giovanna and Antonarakis, Stylianos E and Behr, Jonas and Bertone, Paul and Bohnert, Regina and Bucher, Philipp and Cloonan, Nicole and Derrien, Thomas and Djebali, Sarah and Du, Jiang and Dudoit, Sandrine and Gerstein, Mark and Gingeras, Thomas R and Gonzalez, David and Grimmond, Sean M and Guig{\'o}, Roderic and Habegger, Lukas and Harrow, Jennifer and Hubbard, Tim J and Iseli, Christian and Jean, G{\'e}raldine and Kahles, andr{\'e} and Lagarde, Julien and Leng, Jing and Lefebvre, Gregory and Lewis, Suzanna and Mortazavi, Ali and Niermann, Peter and R{\"a}tsch, Gunnar and Reymond, Alexandre and Ribeca, Paolo and Richard, Hugues and Rougemont, Jacques and Rozowsky, Joel and Sammeth, Michael and Sboner, andrea and Schulz, Marcel H and Searle, Steven M J and Solorzano, Naryttza Diaz and Solovyev, Victor and Stanke, Mario and Stevenson, Brian J and Stockinger, Heinz and Valsesia, Armand Weese, David and White, Simon and Wold, Barbara J and Wu, Jie and Wu, Thomas D and Zeller, Georg and Zerbino, Daniel and Zhang, Michael Q},
title = {{Assessment of transcript reconstruction methods for RNA-seq}},
journal = {Nature Methods},
year = {2013},
volume = {10},
number = {12},
pages = {1177--1184},
month = nov
}
@article{Balakrishnan:2013bs,
author = {Balakrishnan, C N and Chapus, C and Brewer, M S and Clayton, D F},
title = {{Brain transcriptome of the violet-eared waxbill Uraeginthus granatina and recent evolution in the songbird genome.}},
journal = {Open Biology},
year = {2013},
volume = {3},
number = {9},
pages = {130063--130063},
month = sep
}
@article{Steiger:2010dd,
author = {Steiger, Silke S and Fidler, andrew E and Fidler, andrew E and Mueller, Jakob C and Kempenaers, Bart},
title = {{Evidence for adaptive evolution of olfactory receptor genes in 9 bird species.}},
journal = {Journal of Heredity},
year = {2010},
volume = {101},
number = {3},
pages = {325--333},
month = apr
}
@article{Karn:2008fz,
author = {Karn, R C and Clark, N L and Nguyen, E D and Swanson, W J},
title = {{Adaptive Evolution in Rodent Seminal Vesicle Secretion Proteins}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {11},
pages = {2301--2310},
month = aug
}
@article{Barribeau:2011jn,
author = {Barribeau, S M and Barribeau, S M and Gerardo, N M and Gerardo, N M},
title = {{An evolutionarily and ecologically focused strategy for genome sequencing efforts}},
year = {2011},
pages = {1--4},
month = nov
}
@article{Gowaty:2012ga,
author = {Gowaty, Patricia Adair and Gowaty, Patricia Adair and Kim, Yong-Kyu and Kim, Yong-Kyu and anderson, Wyatt W},
title = {{No evidence of sexual selection in a repetition of Bateman's classic study of \textit{Drosophila} \textit{melanogaster}.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = jun
}
@article{SMITH:2012js,
author = {Smith, Gilbert and Lohse, Konrad and Etges, William J and Ritchie, Michael G},
title = {{Model-based comparisons of phylogeographic scenarios resolve the intraspecific divergence of cactophilic \textit{Drosophila} mojavensis.}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {13},
pages = {3293--3307},
month = jul
}
@article{Petersen:2012is,
author = {Petersen, Alexander M and Petersen, Alexander M and Riccaboni, Massimo and Riccaboni, Massimo and Stanley, H Eugene and Stanley, H Eugene and Pammolli, Fabio and Pammolli, Fabio},
title = {{Persistence and uncertainty in the academic career.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {14},
pages = {5213--5218},
month = apr
}
@article{Lusk:2010bk,
author = {Lusk, Richard W and Eisen, Michael B},
title = {{Evolutionary Mirages: Selection on Binding Site Composition Creates the Illusion of Conserved Grammars in \textit{Drosophila} Enhancers}},
journal = {PLOS Genetics},
year = {2010},
volume = {6},
number = {1},
pages = {e1000829},
month = jan
}
@article{Stewart:2009hf,
author = {Stewart, Sarah L M and Westneat, David F and Ritchison, Gary},
title = {{Extra-pair paternity in eastern bluebirds: effects of manipulated density and natural patterns of breeding synchrony}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {64},
number = {3},
pages = {463--473},
month = sep
}
@article{Ostrowski:2009dj,
author = {Ostrowski, M-F and Rousselle, Y and Tsitrone, A and Santoni, S and David, J and Reboud, X and Muller, M-H},
title = {{Using linked markers to estimate the genetic age of a volunteer population: a theoretical and empirical approach}},
journal = {Heredity},
year = {2009},
volume = {105},
number = {4},
pages = {358--369},
month = dec
}
@article{Bonduriansky:2009gz,
author = {Bonduriansky, Russell},
title = {{Reappraising Sexual Coevolution and the Sex Roles}},
journal = {PLOS Biology},
year = {2009},
volume = {7},
number = {12},
pages = {e1000255},
month = dec
}
@article{LewisRogers:2009fw,
author = {Lewis-Rogers, N and Bendall, M L and Crandall, K A},
title = {{Phylogenetic Relationships and Molecular Adaptation Dynamics of Human Rhinoviruses}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {5},
pages = {969--981},
month = apr
}
@article{Ruden:2011fu,
author = {Ruden, Douglas M},
title = {{The (new) new synthesis and epigenetic capacitors of morphological evolution}},
journal = {Nature Genetics},
year = {2011},
volume = {43},
number = {2},
pages = {88--89},
month = feb
}
@article{Dewsbury:1975ue,
author = {Dewsbury, DA and Dewsbury, DA},
title = {{DIVERSITY AND ADAPTATION IN RODENT COPULATORY-BEHAVIOR}},
journal = {Science (New York, NY)},
year = {1975},
volume = {190},
number = {4218},
pages = {947--954}
}
@article{Chen:2009bt,
author = {Chen, Shu-Hwa and Su, Sheng-Yao and Lo, Chen-Zen and Chen, Kuei-Hsien and Huang, Teng-Jay and Kuo, Bo-Han and Lin, Chung-Yen},
title = {{PALM: A Paralleled and Integrated Framework for Phylogenetic Inference with Automatic Likelihood Model Selectors}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {12},
pages = {e8116},
month = dec
}
@article{vanOosterhout:2006wu,
author = {van Oosterhout, Cock and Joyce, Domino A and Cummings, Stephen M and Blais, Jonatan and Blais, Jonatan and Barson, Nicola J and Barson, Nicola J and Ramnarine, Indar W and Mohammed, Ryan S and Mohammed, Ryan S and Persad, Nadia and Persad, Nadia and Cable, Joanne},
title = {{Balancing selection, random genetic drift, and genetic variation at the major histocompatibility complex in two wild populations of guppies (Poecilia reticulata)}},
journal = {Evolution},
year = {2006},
volume = {60},
number = {12},
pages = {2562--2574}
}
@article{Johnson:2004fk,
author = {Johnson, Robert A and Gibbs, Allen G},
title = {{Effect of mating stage on water balance, cuticular hydrocarbons and metabolism in the desert harvester ant, Pogonomyrmex barbatus}},
journal = {Journal of Insect Physiology},
year = {2004},
volume = {50},
number = {10},
pages = {943--953},
month = oct
}
@article{Rose:2009es,
author = {Rose, Alexandra P},
title = {{Temporal and Individual Variation in offspring Provisioning by Tree Swallows: A New Method of Automated Nest Attendance Monitoring}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {1},
pages = {e4111},
month = jan
}
@article{Jarman:1974vn,
author = {Jarman, P.J.},
title = {{The social organisation of antelope in relation to their ecology}},
journal = {Behaviour},
year = {1974},
volume = {74},
number = {3},
pages = {215--267}
}
@article{Lacey:1997vc,
author = {Lacey, EA and Braude, SH and Wieczorek, JR},
title = {{Burrow sharing by colonial tuco-tucos (\emph{\textit{Ctenomys} \textit{sociabilis}})}},
journal = {Journal of Mammalogy},
year = {1997},
volume = {78},
number = {2},
pages = {556--562}
}
@article{Lopes:2010ea,
author = {Lopes, J S and Beaumont, M A},
title = {{ABC: A useful Bayesian tool for the analysis of population data}},
journal = {Infection, Genetics and Evolution},
year = {2010},
volume = {10},
number = {6},
pages = {825--832},
month = aug
}
@article{Buston:2009dn,
author = {Buston, P M and Zink, A G},
title = {{Reproductive skew and the evolution of conflict resolution: a synthesis of transactional and tug-of-war models}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {3},
pages = {672--684},
month = may
}
@article{Anonymous:2013fi,
author = {Triska, M and Grocutt, D and Southern, J and Murphy, D J},
title = {{cisExpress: motif detection in DNA sequences}},
journal = {{\ldots} },
year = {2013}
}
@article{Illingworth:2010go,
author = {Illingworth, Robert S and Gruenewald-Schneider, Ulrike and Webb, Shaun and Kerr, Alastair R W and James, Keith D and Turner, Daniel J and Smith, Colin and Harrison, David J and andrews, Robert and Bird, Adrian P},
title = {{Orphan CpG Islands Identify Numerous Conserved Promoters in the Mammalian Genome}},
journal = {PLOS Genetics},
year = {2010},
volume = {6},
number = {9},
pages = {e1001134},
month = sep
}
@article{Sidlauskas:2009cs,
author = {Sidlauskas, Brian and Ganapathy, Ganeshkumar and Hazkani-Covo, Einat and Jenkins, Kristin P and Lapp, Hilmar and Mccall, Lauren W and Price, Samantha and Scherle, Ryan and Spaeth, Paula A and Kidd, David M},
title = {{LINKING BIG: THE CONTINUING PROMISE OF EVOLUTIONARY SYNTHESIS}},
journal = {Evolution},
year = {2009},
volume = {64},
number = {4},
pages = {871--880},
month = oct
}
@article{Anonymous:l--1nu06,
title = {{Ecology 1941 Spencer}},
year = {2005},
pages = {6},
month = apr
}
@article{Warren:2007eh,
author = {Warren, R L and Sutton, G G and Jones, S J M and Holt, R A},
title = {{Assembling millions of short DNA sequences using SSAKE}},
journal = {Bioinformatics (Oxford, England)},
year = {2007},
volume = {23},
number = {4},
pages = {500--501},
month = feb
}
@article{Engels:2009be,
author = {Engels, W R},
title = {{Exact Tests for Hardy-Weinberg Proportions}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {4},
pages = {1431--1441},
month = dec
}
@inproceedings{Kogan:2011vh,
author = {Kogan, A and Saslow, LR and Impett, EA},
title = {{Thin-slicing study of the oxytocin receptor (OXTR) gene and the evaluation and expression of the prosocial disposition}},
booktitle = {Proceedings of the {\ldots}},
year = {2011}
}
@article{Vermette:2002tk,
author = {Vermette, R and Fairbairn, DJ},
title = {{How well do mating frequency and duration predict paternity success in the polygynandrous water strider Aquarius remigis?}},
journal = {Evolution},
year = {2002},
volume = {56},
number = {9},
pages = {1808--1820}
}
@article{Weir:2010gr,
author = {Golding, Brian and Weir, Bruce S},
title = {{Statistical genetic issues for genome-wide association studiesThis article is one of a selection of papers from the conference {\textquotedblleft}Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming{\textquotedblright}.}},
journal = {Genome / National Research Council Canada = G{\'e}nome / Conseil national de recherches Canada},
year = {2010},
volume = {53},
number = {11},
pages = {869--875},
month = nov
}
@article{Morton:2010cg,
author = {Morton, D B and Clemens-Grisham, R and Hazelett, D J and Vermehren-Schmaedick, A},
title = {{Infertility and Male Mating Behavior Deficits Associated With Pde1c in \textit{Drosophila} \textit{melanogaster}}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {1},
pages = {159--165},
month = sep
}
@article{Valimaki:2010bd,
author = {Valimaki, Panu and Kaitala, Arja},
title = {{Properties of male ejaculates do not generate geographical variation in female mating tactics in a butterfly Pieris napi}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {5},
pages = {1173--1179},
month = may
}
@article{Akcay:2009kc,
author = {Ak{\c c}ay, Erol and Roughgarden, Joan},
title = {{The Perfect Family: Decision Making in Biparental Care}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7345},
month = oct
}
@article{Cushing:2003kh,
author = {Cushing, Bruce S and Mogekwu, Ngozi and Le, Wei-Wei and Hoffman, Gloria E and Carter, C Sue},
title = {{Cohabitation induced Fos immunoreactivity in the monogamous prairie vole}},
journal = {Brain Research},
year = {2003},
volume = {965},
number = {1-2},
pages = {203--211},
month = mar
}
@article{Arnold:1984ws,
author = {Arnold, SJ and Wade, MJ},
title = {{On the Measurement of Natural and Sexual Selection: Theory}},
journal = {Evolution},
year = {1984},
volume = {38},
number = {4},
pages = {709--719}
}
@article{Managadze:2013fq,
author = {Managadze, David and Managadze, David and Lobkovsky, Alexander E and Lobkovsky, Alexander E and Wolf, Yuri I and Wolf, Yuri I and Shabalina, Svetlana A and Shabalina, Svetlana A and Rogozin, Igor B and Rogozin, Igor B and Koonin, Eugene V and Koonin, Eugene V},
title = {{The Vast, Conserved Mammalian lincRNome}},
journal = {PLOS Computational Biology},
year = {2013},
volume = {9},
number = {2},
pages = {e1002917},
month = feb
}
@article{Filatov:2009hc,
author = {Filatov, D A},
title = {{Processing and population genetic analysis of multigenic datasets with ProSeq3 software}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {23},
pages = {3189--3190},
month = nov
}
@article{Wang:2012dx,
author = {Wang, Zi Long and Liu, Ting Ting and Huang, Zachary Y and Wu, Xiao Bo and Yan, Wei Yu and Zeng, Zhi Jiang},
title = {{Transcriptome Analysis of the Asian Honey Bee Apis cerana cerana}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {10},
pages = {e47954},
month = oct
}
@article{Schad:2005wl,
author = {Schad, J and Ganzhorn, JU and Sommer, S},
title = {{Parasite burden and constitution of major histocompatibility complex in the Malagasy mouse lemur, \emph{Microcebus murinus}}},
journal = {Evolution},
year = {2005},
volume = {59},
number = {2},
pages = {439--450}
}
@article{Hoffman:2012do,
author = {Hoffman, J I and TUCKER, R and TUCKER, R and BRIDGETT, S J and BRIDGETT, S J and CLARK, M S and CLARK, M S and FORCADA, J and FORCADA, J and Slate, J},
title = {{Rates of assay success and genotyping error when single nucleotide polymorphism genotyping in non-model organisms: a case study in the Antarctic fur seal.}},
journal = {Molecular Ecology Resources},
year = {2012},
month = jun
}
@article{Rho:2010gw,
author = {Rho, M and Tang, H and Ye, Y},
title = {{FragGeneScan: predicting genes in short and error-prone reads}},
journal = {Nucleic Acids Research},
year = {2010},
volume = {38},
number = {20},
pages = {e191--e191},
month = nov
}
@article{Holsinger:2009he,
author = {Holsinger, Kent E and Weir, Bruce S},
title = {{Genetics in geographically structured populations: defining, estimating and interpreting FST}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {9},
pages = {639--650},
month = sep
}
@article{Reif:2003ua,
author = {Reif, A and Lesch, KP},
title = {{Toward a molecular architecture of personality}},
journal = {Behavioural Brain Research},
year = {2003},
volume = {139},
number = {1-2},
pages = {1--20}
}
@article{Nunn:2003vg,
author = {Nunn, CL},
title = {{Behavioural defences against sexually transmitted diseases in primates}},
journal = {Animal Behaviour},
year = {2003},
volume = {66},
number = {1},
pages = {37--48}
}
@article{Vera:2008el,
author = {Vera, J Cristobal and Wheat, Christopher W and Fescemyer, Howard W and Frilander, Mikko J and Crawford, Douglas L and Hanski, Ilkka and Marden, James H},
title = {{Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {7},
pages = {1636--1647},
month = apr
}
@article{PARKER:1991un,
author = {Parker, GA and Simmons, LW and Simmons, LW},
title = {{A MODEL OF CONSTANT RANDOM SPERM DISPLACEMENT DURING MATING - EVIDENCE FROM SCATOPHAGA}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1991},
volume = {246},
number = {1316},
pages = {107--115}
}
@article{Yeates:2009kg,
author = {Yeates, S E and Einum, S and Fleming, I A and Megens, H J and Stet, R J M and Hindar, K and Holt, W V and Van Look, K J W and Gage, M J G},
title = {{Atlantic salmon eggs favour sperm in competition that have similar major histocompatibility alleles}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1656},
pages = {559--566},
month = feb
}
@article{Poon:2007dva,
author = {Poon, Art F Y and Lewis, Fraser I and Pond, Sergei L Kosakovsky and Frost, Simon D W},
title = {{An Evolutionary-Network Model Reveals Stratified Interactions in the V3 Loop of the HIV-1 Envelope}},
journal = {PLOS Computational Biology},
year = {2007},
volume = {3},
number = {11},
pages = {e231}
}
@article{Chaisson:2009bi,
author = {Chaisson, Mark J and Chaisson, Mark J and Brinza, Dumitru and Brinza, Dumitru and Pevzner, Pavel A and Pevzner, Pavel A},
title = {{\textit{De novo} fragment assembly with short mate-paired reads: Does the read length matter?}},
journal = {Genome Research},
volume = {19},
pages = {336--346}
}
@article{Zhao:2012cl,
author = {Zhao, L. and Morgan, T.E. and Mao, Z. and Lin, S and Cadenas, E. and Finch, C.E. and Pike, C.J. and Mack, W.J. and Brinton, R.D.},
title = {{Continuous versus Cyclic Progesterone Exposure Differentially Regulates Hippocampal Gene Expression and Functional Profiles}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e31267}
}
@article{Lie:2009gi,
author = {Lie, Hanne C and Simmons, Leigh W and Rhodes, Gillian and Plaistow, Stewart},
title = {{Does Genetic Diversity Predict Health in Humans?}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6391},
month = jul
}
@article{deBakker:2006br,
author = {de Bakker, Paul I W and Mcvean, Gil and Sabeti, Pardis C and Miretti, Marcos M and Green, Todd and Marchini, Jonathan and Ke, Xiayi and Monsuur, Alienke J and Whittaker, Pamela and Delgado, Marcos and Morrison, Jonathan and Richardson, Angela and Walsh, Emily C and Gao, Xiaojiang and Galver, Luana and Hart, John and Hafler, David A and Pericak-Vance, Margaret and Todd, John A and Daly, Mark J and Trowsdale, John and Wijmenga, Cisca and Vyse, Tim J and Beck, Stephan and Murray, Sarah Shaw and Carrington, Mary and Gregory, Simon and Deloukas, Panos and Rioux, John D},
title = {{A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC}},
journal = {Nature Genetics},
year = {2006},
volume = {38},
number = {10},
pages = {1166--1172},
month = sep
}
@article{CluttonBrock:1999uk,
author = {Clutton-Brock, TH and Gaynor, D and Gaynor, D and McIlrath, GM and McIlrath, GM and MacColl, ADC and Kansky, R and Kansky, R and Chadwick, P and Chadwick, P and Manser, M and Manser, M and Skinner, JD and Skinner, JD and Brotherton, PNM and Brotherton, PNM},
title = {{Predation, group size and mortality in a cooperative mongoose, Suricata suricatta}},
journal = {Journal of Animal Ecology},
year = {1999},
volume = {68},
number = {4},
pages = {672--683}
}
@article{Keller:2012ec,
author = {Keller, I and Keller, I and Wagner, C E and Wagner, C E and Greuter, L and Greuter, L and Mwaiko, S and Mwaiko, S and Selz, O M and Selz, O M and Sivasundar, A and Sivasundar, A and Wittwer, S and Wittwer, S and Seehausen, O and Seehausen, O},
title = {{Population genomic signatures of divergent adaptation, gene flow and hybrid speciation in the rapid radiation of Lake Victoria cichlid fishes}},
journal = {Molecular Ecology},
year = {2012},
pages = {n/a--n/a},
month = nov
}
@article{Hagelberg:2003wt,
author = {Hagelberg, E},
title = {{Recombination or mutation rate heterogeneity? Implications for Mitochondrial Eve}},
journal = {Trends In Genetics},
year = {2003},
volume = {19},
number = {2},
pages = {84--90}
}
@article{Markov:2009kr,
author = {Markov, A V and Lazebny, O E and Goryacheva, I I and Antipin, M I and Kulikov, A M},
title = {{Symbiotic bacteria affect mating choice in \textit{Drosophila} \textit{melanogaster}}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {5},
pages = {1011--1017},
month = may
}
@article{Bierut:2007et,
author = {Bierut, L J and Madden, P A F and Breslau, N and Johnson, E O and Hatsukami, D and Pomerleau, O F and Swan, G E and Rutter, J and Bertelsen, S and Fox, L and Fugman, D and Goate, A M and Hinrichs, A L and Konvicka, K and Martin, N G and Montgomery, G W and Saccone, N L and Saccone, S F and Wang, J C and Chase, G A and Rice, J P and Ballinger, D G},
title = {{Novel genes identified in a high-density genome wide association study for nicotine dependence}},
journal = {Human Molecular Genetics},
year = {2006},
volume = {16},
number = {1},
pages = {24--35},
month = nov
}
@article{Anonymous:2009wq,
title = {{In silico miRNA prediction in metazoan genomes: balancing between sensitivity
and specificity}},
journal = {BMC Genomics},
year = {2009},
pages = {1--56},
month = apr
}
@article{McFarland:1989kb,
author = {McFarland, L V and McFarland, L V and Mulligan, M E and Mulligan, M E and Kwok, R Y and Kwok, R Y and Stamm, W E and Stamm, W E},
title = {{Nosocomial acquisition of Clostridium difficile infection.}},
journal = {The New England journal of medicine},
year = {1989},
volume = {320},
number = {4},
pages = {204--210},
month = jan
}
@article{Weiss:2006dz,
author = {Weiss, S L},
title = {{Female-specific color is a signal of quality in the striped plateau lizard (Sceloporus virgatus)}},
journal = {Behavioral Ecology},
year = {2006},
volume = {17},
number = {5},
pages = {726--732},
month = jun
}
@article{Lander:2011dc,
author = {Lander, Eric S},
title = {{Initial impact of the sequencing of the human genome}},
journal = {Nature},
year = {2011},
volume = {470},
number = {7333},
pages = {187--197},
month = feb
}
@article{Benedict:2009bb,
author = {Benedict, Lauryn and McEntee, Jay P},
title = {{Context, Structural Variability and Distinctiveness of California Towhee ( Pipilo crissalis) Vocal Duets}},
journal = {Ethology},
year = {2009},
volume = {115},
number = {1},
pages = {77--86},
month = jan
}
@article{Wade:2009ig,
author = {Wade, Michael J and Brandvain, Yaniv and Brandvain, Yaniv},
title = {{Reversing mother's curse: selection on male mitochondrial fitness effects.}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {4},
pages = {1084--1089},
month = apr
}
@article{Viljakainen:2008ef,
author = {Viljakainen, Lumi and Pamilo, Pekka},
title = {{Selection on an Antimicrobial Peptide Defensin in Ants}},
journal = {Journal of Molecular Evolution},
year = {2008},
volume = {67},
number = {6},
pages = {643--652},
month = oct
}
@article{Kennedy:2002kd,
author = {Kennedy, Lorna and Ryvar, Ruth and Gaskell, Rosalind and Addie, Diane and Willoughby, Kim and Carter, Stuart and Thomson, Wendy and Ollier, William and Radford, Alan},
title = {{Sequence analysis of MHC DRB alleles in domestic cats from the United Kingdom}},
journal = {Immunogenetics},
year = {2002},
volume = {54},
number = {5},
pages = {348--352},
month = aug
}
@article{Cockburn:2003wp,
author = {Cockburn, A and Osmond, HL and Mulder, RA and Green, DJ and Double, MC},
title = {{Divorce, dispersal and incest avoidance in the cooperatively breeding superb fairy-wren Malurus cyaneus}},
journal = {Journal of Animal Ecology},
year = {2003},
volume = {72},
number = {2},
pages = {189--202}
}
@article{Ashby:2013cq,
author = {Ashby, B and Ashby, B and Gupta, S and Gupta, S},
title = {{Sexually transmitted infections in polygamous mating systems}},
journal = {Philosophical Transactions of The Royal Society B-Biological Sciences},
year = {2013},
volume = {368},
number = {1613},
pages = {20120048--20120048},
month = jan
}
@article{Brem:2002eu,
author = {Brem, RB and Brem, RB and Yvert, G and Yvert, G and Clinton, R and Clinton, R and Kruglyak, L},
title = {{Genetic dissection of transcriptional regulation in budding yeast}},
journal = {Science (New York, NY)},
year = {2002},
volume = {296},
number = {5568},
pages = {752--755}
}
@article{QUAY:1953we,
author = {QUAY, WB},
title = {{SEASONAL AND SEXUAL DIFFERENCES IN THE DORSAL SKIN GLAND OF THE KANGAROO RAT (DIPODOMYS)}},
journal = {Journal of Mammalogy},
year = {1953},
volume = {34},
number = {1},
pages = {1--14}
}
@article{Berg:2009jd,
author = {Berg, E C and Eadie, J M and Langen, T A and Russell, A F},
title = {{Reverse sex-biased philopatry in a cooperative bird: genetic consequences and a social cause}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {16},
pages = {3486--3499},
month = aug
}
@article{Setchell:2005dz,
author = {Setchell, Joanna M and Charpentier, Marie and Wickings, E Jean},
title = {{Sexual selection and reproductive careers in mandrills (Mandrillus sphinx)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2005},
volume = {58},
number = {5},
pages = {474--485},
month = may
}
@article{RadaIglesias:2011bf,
author = {Rada-Iglesias, Alvaro and Bajpai, Ruchi and Swigut, Tomek and Brugmann, Samantha A and Flynn, Ryan A and Wysocka, Joanna},
title = {{A unique chromatin signature uncovers early developmental enhancers in humans}},
journal = {Nature},
year = {2010},
volume = {470},
number = {7333},
pages = {279--283},
month = dec
}
@article{NAGY:1994vd,
author = {Nagy, Kenneth A},
title = {{Seasonal Water, Energy and Food Use by Free-Living, Arid-Habitat Mammals}},
journal = {Australian Journal of Zoology},
year = {1994},
volume = {42},
number = {1},
pages = {55--63}
}
@article{Hellin:2009kv,
author = {Hellin, Joan Lopez and Bech-Serra, Joan J and Moctezuma, Enrique Lara and Chocron, Sara and Santin, Sheila and Madrid, Alvaro and Vilalta, Ramon and Canals, Francesc and Torra, Roser and Meseguer, Anna and Nieto, Jose L},
title = {{Very Low-Molecular-Mass Fragments of Albumin in the Plasma of Patients With Focal Segmental Glomerulosclerosis}},
journal = {American Journal of Kidney Diseases},
year = {2009},
volume = {54},
number = {5},
pages = {871--880},
month = nov
}
@article{DeLuca:2011ki,
author = {De Luca, Gilles and De Luca, Gilles and Barakat, Mohamed and Barakat, Mohamed and Ortet, Philippe and Ortet, Philippe and Fochesato, Sylvain and Fochesato, Sylvain and Jourlin-Castelli, C{\'e}cile and Jourlin-Castelli, C{\'e}cile and Ansaldi, Mireille and Ansaldi, Mireille and Py, B{\'e}atrice and Py, B{\'e}atrice and Fichant, Gwennaele and Fichant, Gwennaele and Coutinho, Pedro M and Voulhoux, Rom{\'e} and Voulhoux, Rom{\'e} and Bastien, Olivier and Bastien, Olivier and Mar{\'e}chal, Eric and Mar{\'e}chal, Eric and Henrissat, Bernard and Quentin, Yves and Quentin, Yves and Noirot, Philippe and Noirot, Philippe and Filloux, Alain and Filloux, Alain and M{\'e}jean, Vincent and M{\'e}jean, Vincent and DuBow, Michael S and DuBow, Michael S and Barras, Fr{\'e}d{\'e}ric and Barras, Fr{\'e}d{\'e}ric and Barbe, Valerie and Barbe, Valerie and Weissenbach, Jean and Mihalcescu, Irina and Mihalcescu, Irina and Verm{\'e}glio, andr{\'e} and Verm{\'e}glio, andr{\'e} and Achouak, Wafa and Achouak, Wafa and Heulin, Thierry and Heulin, Thierry},
title = {{The Cyst-Dividing Bacterium Ramlibacter tataouinensis TTB310 Genome Reveals a Well-Stocked Toolbox for Adaptation to a Desert Environment}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {9},
pages = {e23784},
month = sep,
annote = {high GC content in desert adapter bacteria{\ldots} does this generalize to "desert species"
}
}
@article{Singleton:2010ik,
author = {Singleton, andrew B and Hardy, John and Traynor, Bryan J and Houlden, Henry},
title = {{Towards a complete resolution of the genetic architecture of disease}},
journal = {Trends In Genetics},
year = {2010},
volume = {26},
number = {10},
pages = {438--442},
month = oct
}
@article{Anonymous:O4qkUptv,
title = {{nj7317-873a}},
year = {2010},
pages = {1--3},
month = oct
}
@article{Mcguigan:2009ft,
author = {Mcguigan, Katrina and Sgr{\`o}, Carla M},
title = {{Evolutionary consequences of cryptic genetic variation}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {6},
pages = {305--311},
month = jun
}
@book{Endler:1986tz,
author = {Endler, John},
title = {{Natural Selection in the Wild}},
publisher = {Princeton University Press},
year = {1986},
month = apr
}
@article{Cheung:2008df,
author = {Cheung, Foo and Win, Joe and Lang, Jillian M and Hamilton, John and Vuong, Hue and Leach, Jan E and Kamoun, Sophien and andr{\'e} L{\'e}vesque, C and Tisserat, Ned and Buell, C Robin},
title = {{Analysis of the Pythium ultimum transcriptome using Sanger and Pyrosequencing approaches}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {542}
}
@article{Anonymous:xnqJnoeF,
title = {{Great ape DNA sequences reveal a reduced diversity and an expansion in humans}},
year = {2001},
pages = {1--3},
month = jan
}
@article{Modrek:2001ud,
author = {Modrek, B and Resch, A and Grasso, C and Lee, C},
title = {{Genome-wide detection of alternative splicing in expressed sequences of human genes.}},
journal = {Nucleic Acids Research},
year = {2001},
volume = {29},
number = {13},
pages = {2850--2859},
month = jul
}
@article{Pitnick:1999vw,
author = {Pitnick, S and Markow, T and Markow, T and Spicer, GS and Spicer, GS},
title = {{Evolution of multiple kinds of female sperm-storage organs in \textit{Drosophila}}},
journal = {Evolution},
year = {1999},
volume = {53},
number = {6},
pages = {1804--1822}
}
@article{Cohas:2007kd,
author = {Cohas, Aur{\'e}lie and Bonenfant, Christophe and Gaillard, Jean-Michel and Allain{\'e}, Dominique},
title = {{Are extra-pair young better than within-pair young? A comparison of survival and dominance in alpine marmot}},
journal = {Journal of Animal Ecology},
year = {2007},
volume = {76},
number = {4},
pages = {771--781},
month = jul
}
@article{Johnson:2012id,
author = {Johnson, Jeff A and Ambers, Angie D and Ambers, Angie D and Burnham, Kurt K and Burnham, Kurt K},
title = {{Genetics of Plumage Color in the Gyrfalcon (Falco rusticolus): Analysis of the Melanocortin-1 Receptor Gene.}},
journal = {Journal of Heredity},
year = {2012},
volume = {103},
number = {3},
pages = {315--321},
month = may
}
@article{Boesch:2010hz,
author = {Boesch, Christophe and Bol{\'e}, Camille and Eckhardt, Nadin and Boesch, Hedwige},
title = {{Altruism in Forest Chimpanzees: The Case of Adoption}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {1},
pages = {e8901},
month = jan
}
@article{Davis:2010gt,
author = {Davis, Jon R and DeNardo, Dale F},
title = {{Seasonal Patterns of Body Condition, Hydration State, and Activity of Gila Monsters (Heloderma suspectum) at a Sonoran Desert Site}},
journal = {Journal of Herpetology},
year = {2010},
volume = {44},
number = {1},
pages = {83--93},
month = mar
}
@article{EVANS:1986tb,
author = {EVANS, AM and MCCLURE, PA},
title = {{EFFECTS OF SOCIAL-ENVIRONMENT ON SEXUAL-MATURATION IN FEMALE COTTON RATS (SIGMODON-HISPIDUS)}},
journal = {Biology of Reproduction},
year = {1986},
volume = {35},
number = {5},
pages = {1081--1087}
}
@article{Pespeni:2013iv,
author = {Pespeni, Melissa H and Palumbi, Stephen R},
title = {{Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {13},
pages = {3580--3597},
month = jun
}
@article{Hartmann:1998ws,
author = {Hartmann, M and Golding, GB},
title = {{Searching for substitution rate heterogeneity}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {1998},
volume = {9},
number = {1},
pages = {64--71}
}
@article{Langmead:2009fv,
author = {Langmead, Ben and Trapnell, Cole and Pop, Mihai and Salzberg, Steven L},
title = {{Ultrafast and memory-efficient alignment of short DNA sequences to the human genome}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {3},
pages = {R25}
}
@article{Hain:2007jz,
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {18},
month = sep
}
@article{Kempenaers:1995wo,
author = {Kempenaers, B and Verheyen, G and DHONDT, AA},
title = {{Mate guarding and copulation behaviour in monogamous and polygynous blue tits: do males follow a best-of-a-bad-job strategy?}},
journal = {Behavioral Ecology and Sociobiology},
year = {1995},
volume = {36},
number = {1},
pages = {33--42}
}
@article{Huigens:2009eg,
author = {Huigens, M E and Pashalidou, F G and Qian, M H and Bukovinszky, T and Smid, H.M. and van Loon, J J A and Dicke, M and Fatouros, N E},
title = {{Hitch-hiking parasitic wasp learns to exploit butterfly antiaphrodisiac}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {3},
pages = {820--825},
month = jan
}
@article{Vignieri:2009gd,
author = {Vignieri, Sacha N},
title = {{The Genetic Effects of Ecological Disturbance: Flooding in Jumping Mice}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {1},
pages = {126--135},
month = jan
}
@article{Young:2007hk,
author = {Young, Larry J and Hammock, Elizabeth A D},
title = {{On switches and knobs, microsatellites and monogamy}},
journal = {Trends In Genetics},
year = {2007},
volume = {23},
number = {5},
pages = {209--212},
month = may
}
@article{Osoegawa:1998fx,
title = {{An improved approach for construction of bacterial artificial chromosome libraries}},
journal = {Genomics},
year = {1998},
volume = {52},
number = {1},
pages = {1--8}
}
@article{Newman:1999ve,
author = {Newman, S W and Newman, S W},
title = {{The medial extended amygdala in male reproductive behavior. A node in the mammalian social behavior network.}},
journal = {Annals of the New York Academy of Sciences},
year = {1999},
volume = {877},
pages = {242--257},
month = jun
}
@article{Manno:2008cu,
author = {Manno, Theodore G},
title = {{Social networking in the Columbian ground squirrel, Spermophilus columbianus}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {4},
pages = {1221--1228},
month = apr
}
@article{Brommer:2008cy,
author = {Ryman, Nils and Leimar, Olof},
title = {{Effect of mutation on genetic differentiation among nonequilibrium populations.}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {9},
pages = {2250--2259},
month = sep
}
@article{Powell:2011kk,
author = {Powell, Jeff R and Monaghan, Michael T and {\"O}PIK, MAARJA and Rillig, Matthias C},
title = {{Evolutionary criteria outperform operational approaches in producing ecologically relevant fungal species inventories}},
journal = {Molecular Ecology},
year = {2010},
volume = {20},
number = {3},
pages = {655--666},
month = dec
}
@article{Natali:2013kh,
author = {Natali, Lucia and Cossu, Rosa Maria and Barghini, Elena and Giordani, Tommaso and Buti, Matteo and Mascagni, Flavia and Morgante, Michele and Gill, Navdeep and Kane, Nolan C and Rieseberg, Loren and Cavallini, andrea},
title = {{The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {686}
}
@article{Wilson:2008du,
author = {Wilson, A J and Gelin, U and Perron, M C and R{\'e}ale, D},
title = {{Indirect genetic effects and the evolution of aggression in a vertebrate system}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1656},
pages = {533--541},
month = feb
}
@article{Libbrecht:2013jaa,
author = {Libbrecht, Romain and Libbrecht, Romain and Oxley, Peter R and Kronauer, Daniel JC and Kronauer, Daniel JC and Keller, Laurent},
title = {{Ant genomics sheds light on the molecular regulation of social organization}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {7},
pages = {212}
}
@article{Reichard:2007eta,
author = {Reichard, Martin and Le Comber, Steven C and Smith, Carl},
title = {{Sneaking from a female perspective}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {4},
pages = {679--688},
month = oct
}
@article{Rohland:2012hs,
author = {Rohland, Nadin and Reich, David},
title = {{Cost-effective, high-throughput DNA sequencing libraries for multiplexed target capture.}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {5},
pages = {939--946},
month = may
}
@article{Tallmon:2008jo,
author = {Tallmon, David A and Koyuk, Ally and Luikart, Gordon and Beaumont, Mark A},
title = {{COMPUTER PROGRAMS: onesamp: a program to estimate effective population size using approximate Bayesian computation}},
journal = {Molecular Ecology Resources},
year = {2008},
volume = {8},
number = {2},
pages = {299--301},
month = jun
}
@article{Yandell:2012kd,
author = {Yandell, Mark and Ence, Daniel},
title = {{A beginner's guide to eukaryotic genome annotation.}},
journal = {Nature Reviews Genetics},
year = {2012},
volume = {13},
number = {5},
pages = {329--342}
}
@article{Haasl:2011hd,
author = {Haasl, R J and Payseur, B A},
title = {{Multi-locus inference of population structure: a comparison between single nucleotide polymorphisms and microsatellites}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {1},
pages = {158--171},
month = mar
}
@article{Heimeier:2003dv,
author = {Heimeier, Rachel A and Donald, John A},
title = {{Renal C-type natriuretic peptide and natriuretic peptide receptor B mRNA expression are affected by water deprivation in the Spinifex Hopping mouse}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2003},
volume = {136},
number = {3},
pages = {565--575},
month = nov
}
@article{Fuhrmann:1966wf,
author = {Fuhrmann, W and Lichte, KH},
title = {{Human red cell acid phosphatase polymorphism}},
journal = {Human Genetics},
year = {1966},
volume = {3},
number = {2},
pages = {121--126}
}
@article{Tsutsui:2000vl,
author = {Tsutsui, ND and Suarez, AV and Holway, DA and Case, TJ},
title = {{Reduced genetic variation and the success of an invasive species}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {11},
pages = {5948--5953}
}
@article{Shah:2000te,
author = {Shah, SS and Ruth, A and Coffin, SE},
title = {{Infection due to Moraxella osloensis: Case report and review of the literature}},
journal = {Clinical Infectious Diseases},
year = {2000},
volume = {30},
number = {1},
pages = {179--181}
}
@article{Administrator:2014wa,
author = {{Administrator}},
title = {{Title pageGenomic Repeat Element Analyzer for Mammals (GREAM)}},
year = {2014},
pages = {1--13},
month = feb
}
@article{Pitnick:2000uy,
author = {Pitnick, S and Brown, WD and Brown, WD},
title = {{Criteria for demonstrating female sperm choice}},
journal = {Evolution},
year = {2000},
volume = {54},
number = {3},
pages = {1052--1056}
}
@article{Erlich:2009hf,
author = {Erlich, Y and Chang, K and Gordon, A and Ronen, R and Navon, O and Rooks, M and Hannon, G J},
title = {{DNA Sudoku--harnessing high-throughput sequencing for multiplexed specimen analysis}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {7},
pages = {1243--1253},
month = jul
}
@article{Wcislo:1997wy,
author = {Wcislo, WT and Danforth, BN},
title = {{Secondarily solitary: the evolutionary loss of social behavior}},
journal = {Trends In Ecology {\&} Evolution},
year = {1997},
volume = {12},
number = {12},
pages = {468--474}
}
@article{Chapman:2003uo,
author = {Chapman, T and Arnqvist, G and Bangham, J and Bangham, J and Rowe, L and Rowe, L},
title = {{Sexual conflict}},
journal = {Trends In Ecology {\&} Evolution},
year = {2003},
volume = {18},
number = {1},
pages = {41--47}
}
@article{Richman:2001ty,
author = {Richman, A D and Richman, A D and Herrera, L G and Herrera, L G and Nash, D},
title = {{MHC class II beta sequence diversity in the deer mouse (\emph{\textit{Peromyscus} \textit{maniculatus}}): implications for models of balancing selection}},
journal = {Molecular Ecology},
year = {2001},
volume = {10},
number = {12},
pages = {2765--2773}
}
@article{anderson:2008it,
author = {anderson, Jason S and Reisz, Robert R and Scott, Diane and Fr{\"o}bisch, Nadia B and Sumida, Stuart S},
title = {{A stem batrachian from the Early Permian of Texas and the origin of frogs and salamanders}},
journal = {Nature},
year = {2008},
volume = {453},
number = {7194},
pages = {515--518},
month = may
}
@article{Hunter:2010ei,
author = {Hunter, Rebecca L and Hunter, Rebecca L and Halanych, Kenneth M and Halanych, Kenneth M},
title = {{Phylogeography of the Antarctic planktotrophic brittle star Ophionotus victoriae reveals genetic structure inconsistent with early life history}},
journal = {Marine Biology},
year = {2010},
volume = {157},
number = {8},
pages = {1693--1704}
}
@article{KORPIMAKI:1996ue,
author = {KORPIM{\"A}KI, E and LAHTI, K and LAHTI, K and MAY, CA and MAY, CA and PARKIN, DT and PARKIN, DT and POWELL, GB and POWELL, GB and TOLONEN, P and TOLONEN, P and WETTON, JONH and WETTON, JONH},
title = {{Copulatory behaviour and paternity determined by DNA fingerprinting in kestrels: effects of cyclic food abundance}},
journal = {Animal Behaviour},
year = {1996},
volume = {51},
number = {4},
pages = {945--955}
}
@article{Webb:2004jv,
author = {Webb, Bruce A and Barney, Walter E and Dahlman, Douglas L and DeBorde, Stephanie N and Weer, Claire and Williams, Neil M and Donahue, James M and McDowell, Karen J},
title = {{Eastern tent caterpillars (\textit{Malacosoma} \textit{americanum}) cause mare reproductive loss syndrome.}},
journal = {Journal of Insect Physiology},
year = {2004},
volume = {50},
number = {2-3},
pages = {185--193},
month = feb
}
@article{Orban:2001ti,
author = {Orban, TI and Olah, E},
title = {{Purifying selection on silent sites - a constraint from splicing regulation?}},
journal = {Trends In Genetics},
year = {2001},
volume = {17},
number = {5},
pages = {252--253}
}
@article{Hill:2003ea,
author = {Hill, Tom C J and Walsh, Kerry A and Harris, James A and Moffett, Bruce F},
title = {{Using ecological diversity measures with bacterial communities.}},
journal = {FEMS microbiology ecology},
year = {2003},
volume = {43},
number = {1},
pages = {1--11},
month = feb,
annote = {ne}
}
@article{Yang:2009fc,
author = {Yang, Z and Nielsen, R and Goldman, N},
title = {{In defense of statistical methods for detecting positive selection}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {36},
pages = {E95--E95},
month = sep
}
@article{RIDDLE:2000kt,
author = {Riddle, B},
title = {{Phylogeography and Systematics of the \textit{Peromyscus} \textit{eremicus} Species Group and the Historical Biogeography of North American Warm Regional Deserts}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2000},
volume = {17},
number = {2},
pages = {145--160},
month = nov
}
@article{Datta:2011fl,
author = {Datta, Rhea R and Datta, Rhea R and Small, Stephen and Small, Stephen},
title = {{Gene regulation: piecing together the puzzle of enhancer evolution.}},
journal = {Current biology : CB},
year = {2011},
volume = {21},
number = {14},
pages = {R542--3},
month = jul
}
@article{Koboldt:2009dka,
author = {Koboldt, D C and Chen, K and Wylie, T and Larson, D E and McLellan, M D and Mardis, E R and Weinstock, G M and Wilson, R K and Ding, L},
title = {{VarScan: variant detection in massively parallel sequencing of individual and pooled samples}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {17},
pages = {2283--2285},
month = aug
}
@article{Male:2012gu,
author = {Male, Pierre-Jean G. and Male, Pierre-Jean G. and Martin, Jean-Fran{\c c}ois and Galan, Maxime and Deffontaine, Valerie and Deffontaine, Valerie and Bryja, Josef and Cosson, Jean-Francois and Michaux, Johan and Michaux, Johan and Charbonnel, Nathalie},
title = {{Discongruence of Mhc and cytochrome b phylogeographical patterns in Myodes glareolus (Rodentia: Cricetidae)}},
journal = {Biological Journal of The Linnean Society},
year = {2012},
volume = {105},
number = {4},
pages = {881--899}
}
@article{Chae:2013eq,
author = {Chae, Heejoon and Park, Jinwoo and Lee, Seong-Whan and Nephew, Kenneth P and Kim, Sun},
title = {{Comparative analysis using K-mer and K-flank patterns provides evidence for CpG island sequence evolution in mammalian genomes.}},
journal = {Nucleic Acids Research},
year = {2013},
volume = {41},
number = {9},
pages = {4783--4791},
month = may
}
@article{Lopes:2009fb,
author = {Lopes, J S and Balding, D and Beaumont, M A},
title = {{PopABC: a program to infer historical demographic parameters}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {20},
pages = {2747--2749},
month = oct
}
@article{PerezGonzalez:2009dn,
author = {Perez-gonzalez, J and Carranza, J},
title = {{Female-biased dispersal under conditions of low male mating competition in a polygynous mammal}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {22},
pages = {4617--4630},
month = nov
}
@article{Tachon:1999we,
author = {Tachon, G and Tachon, G and Murray, AM and Murray, AM and Gray, DA and Gray, DA and Cade, WH and Cade, WH},
title = {{Agonistic displays and the benefits of fighting in the field cricket, Gryllus bimaculatus}},
journal = {Journal of Insect Behavior},
year = {1999},
volume = {12},
number = {4},
pages = {533--543}
}
@article{Fraser:2009be,
author = {Fraser, B A and Ramnarine, I W and Neff, B D},
title = {{Selection at the MHC class IIB locus across guppy (Poecilia reticulata) populations}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {2},
pages = {155--167},
month = jul
}
@article{Burri:2008jh,
author = {Burri, R and Hirzel, H N and Salamin, N and Roulin, A and Fumagalli, L},
title = {{Evolutionary Patterns of MHC Class II B in Owls and Their Implications for the Understanding of Avian MHC Evolution}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {6},
pages = {1180--1191},
month = jan
}
@article{Yang:2002vy,
author = {Yang, Ziheng and Swanson, WJ},
title = {{Codon-substitution models to detect adaptive evolution that account for heterogeneous selective pressures among site classes}},
journal = {Molecular Biology and Evolution},
year = {2002},
volume = {19},
number = {1},
pages = {49--57}
}
@article{Eckert:2009ck,
author = {Eckert, andrew J and Pande, Barnaly and Ersoz, Elhan S and Wright, Mark H and Rashbrook, Vanessa K and Nicolet, Charles M and Neale, David B},
title = {{High-throughput genotyping and mapping of single nucleotide polymorphisms in loblolly pine (Pinus taeda L.)}},
journal = {Tree Genetics {\&} Genomes},
year = {2008},
volume = {5},
number = {1},
pages = {225--234},
month = nov
}
@article{Pasaniuc:2009gf,
author = {Pasaniuc, B and Sankararaman, S and Kimmel, G and Halperin, E},
title = {{Inference of locus-specific ancestry in closely related populations}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {12},
pages = {i213--i221},
month = may
}
@article{Crow:2010gn,
author = {Crow, Karen D and Munehara, Hiroyuki and Bernardi, Giacomo},
title = {{Sympatric speciation in a genus of marine reef fishes}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {10},
pages = {2089--2105},
month = mar
}
@article{KiemnecTyburczy:2010jf,
author = {Kiemnec-Tyburczy, Karen M and Kiemnec-Tyburczy, Karen M and Richmond, Jonathan Q and Richmond, Jonathan Q and Savage, Anna E and Savage, Anna E and Zamudio, Kelly R and Zamudio, Kelly R},
title = {{Selection, trans-species polymorphism, and locus identification of major histocompatibility complex class II$\beta$ alleles of New World ranid frogs}},
journal = {Immunogenetics},
year = {2010},
volume = {62},
number = {11-12},
pages = {741--751},
month = sep
}
@article{andolfatto:2011du,
author = {andolfatto, Peter and Davison, Dan and Davison, Dan and Erezyilmaz, Deniz and Erezyilmaz, Deniz and Hu, Tina and Hu, Tina and Mast, Joshua and Mast, Joshua and Sunayama-Morita, Tomoko and Sunayama-Morita, Tomoko and Stern, David L and Stern, David L},
title = {{Multiplexed shotgun genotyping for rapid and efficient genetic mapping.}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {4},
pages = {610--617},
month = apr
}
@article{Chittka:2010hh,
author = {Chittka, Alexandra and Chittka, Lars},
title = {{Epigenetics of Royalty}},
journal = {PLOS Biology},
year = {2010},
volume = {8},
number = {11},
pages = {e1000532},
month = nov
}
@article{Nielsen:2012gg,
author = {Nielsen, Rasmus and Korneliussen, Thorfinn and Korneliussen, Thorfinn and Albrechtsen, anders and Albrechtsen, anders and Li, Yingrui and Wang, Jun},
title = {{SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {7},
pages = {e37558},
month = jul
}
@article{Ng:2009go,
author = {Ng, Sarah B and Turner, Emily H and Robertson, Peggy D and Flygare, Steven D and Bigham, Abigail W and Lee, Choli and Shaffer, Tristan and Wong, Michelle and Bhattacharjee, Arindam and Eichler, Evan E and Bamshad, Michael and Nickerson, Deborah A and Shendure, Jay},
title = {{Targeted capture and massively parallel sequencing of 12 human exomes}},
journal = {Nature},
year = {2009},
volume = {461},
number = {7261},
pages = {272--276},
month = aug
}
@article{Hudson:2009da,
author = {Hudson, Nicholas J and Reverter, Antonio and Wang, YongHong and Wang, YongHong and Greenwood, Paul L and Greenwood, Paul L and Dalrymple, Brian P},
title = {{Inferring the Transcriptional Landscape of Bovine Skeletal Muscle by Integrating Co-Expression Networks}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7249}
}
@article{Stojnev:2009cy,
author = {Stojnev, Slavica and Pejcic, Miljana and Dolicanin, Zana and Velickovic, Ljubinka Jankovic and Dimov, Irena and Stefanovic, Vladisav},
title = {{Challenges of Genomics and Proteomics in Nephrology}},
journal = {Renal Failure},
year = {2009},
volume = {31},
number = {8},
pages = {765--772},
month = jan
}
@article{Sammeth:2009jx,
author = {Sammeth, Michael and Sammeth, Michael},
title = {{Complete alternative splicing events are bubbles in splicing graphs.}},
journal = {Journal of computational biology : a journal of computational molecular cell biology},
year = {2009},
volume = {16},
number = {8},
pages = {1117--1140},
month = aug
}
@article{Jordan:1998wz,
author = {Jordan, WC and Bruford, MW},
title = {{New perspectives on mate choice and the MHC}},
journal = {Heredity},
year = {1998},
volume = {81},
pages = {127--133}
}
@article{Anonymous:2013bm,
author = {Raczy, Come and Petrovski, Roman and Saunders, Christopher T and Chorny, Ilya and Kruglyak, Semyon and Margulies, Elliott H and Chuang, Han-Yu and K{\"a}llberg, Morten and Kumar, Swathi A and Liao, Arnold and Little, Kristina M and Str{\"o}mberg, Michael P and Tanner, Stephen W},
title = {{Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {16},
pages = {2041--2043},
month = aug
}
@article{Abney:2009ge,
author = {Abney, M},
title = {{A graphical algorithm for fast computation of identity coefficients and generalized kinship coefficients}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {12},
pages = {1561--1563},
month = may
}
@article{Aquiloni:2008en,
author = {Aquiloni, L and Gherardi, F},
title = {{Evidence of female cryptic choice in crayfish}},
journal = {Biology Letters},
year = {2008},
volume = {4},
number = {2},
pages = {163--165},
month = apr
}
@article{Kelleher:2009hv,
author = {Kelleher, E S and Markow, T A},
title = {{Duplication, Selection and Gene Conversion in a \textit{Drosophila} mojavensis Female Reproductive Protein Family}},
journal = {Genetics},
year = {2009},
volume = {181},
number = {4},
pages = {1451--1465},
month = apr
}
@article{Carnaval:2009jh,
author = {Carnaval, A C and Hickerson, M J and Haddad, C F B and Rodrigues, M T and Moritz, C},
title = {{Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5915},
pages = {785--789},
month = feb
}
@article{Jex:2011ew,
author = {Jex, Aaron R and Liu, Shiping and Li, Bo and Young, Neil D and Hall, Ross S and Li, Yingrui and Yang, Linfeng and Yang, Linfeng and Zeng, Na and Zeng, Na and Xu, Xun and Xiong, Zijun and Xiong, Zijun and Chen, Fangyuan and Chen, Fangyuan and Wu, Xuan and Wu, Xuan and Zhang, Guojie and Fang, Xiaodong and Kang, Yi and Kang, Yi and anderson, Garry A and anderson, Garry A and Harris, Todd W and Harris, Todd W and Campbell, Bronwyn E and Campbell, Bronwyn E and Vlaminck, Johnny and Vlaminck, Johnny and Wang, Tao and Wang, Tao and Cantacessi, Cinzia and Cantacessi, Cinzia and Schwarz, Erich M and Schwarz, Erich M and Ranganathan, Shoba and Geldhof, Peter and Geldhof, Peter and Nejsum, Peter and Nejsum, Peter and Sternberg, Paul W and Yang, Huanming and Wang, Jun and Wang, Jian and Gasser, Robin B},
title = {{Ascaris suum draft genome.}},
journal = {Nature},
year = {2011},
volume = {479},
number = {7374},
pages = {529--533},
month = nov
}
@article{Jeswiet:2011em,
author = {Jeswiet, Sarah B and Lee-Jenkins, Stacey S Y and Ramnarine, Indar W and Godin, Jean-Guy J},
title = {{Sperm competition risk and mate choice in male Trinidadian guppies, Poecilia reticulata}},
journal = {Animal Behaviour},
year = {2011},
volume = {81},
number = {3},
pages = {639--644},
month = mar
}
@article{Spaapen:2009wp,
author = {Spaapen, RM and Gestel, D and van Elk, M},
title = {{Genome-wide prediction of minor histocompatibility}},
journal = {Novel strategies {\ldots}},
year = {2009}
}
@article{Anonymous:2014ju,
title = {{OP-CBIO130789 1073..1080}},
year = {2014},
pages = {1--8},
month = apr
}
@article{Schloss:2005uq,
author = {Schloss, PD and Handelsman, J},
title = {{Introducing DOTUR, a computer program for defining operational taxonomic units and {\ldots}}},
journal = {Applied and Environmental Microbiology},
year = {2005}
}
@article{DalyEngel:2007kv,
author = {Daly-Engel, Toby S and Grubbs, R Dean and Bowen, Brian W and Toonen, Robert J},
title = {{Frequency of multiple paternity in an unexploited tropical population of sandbar sharks ( Carcharhinus plumbeus)}},
journal = {Canadian Journal of Fisheries and Aquatic Sciences},
year = {2007},
volume = {64},
number = {2},
pages = {198--204},
month = feb
}
@article{DiPoi:2010hg,
author = {Di-Poi, Nicolas and Montoya-Burgos, Juan I and Miller, Hilary and Pourquie, Olivier and Milinkovitch, Michel C and Duboule, Denis},
title = {{Changes in Hox genes{\textquoteright} structure and function during the evolution of the squamate body plan}},
journal = {Nature},
year = {2010},
volume = {464},
number = {7285},
pages = {99--103},
month = mar
}
@article{Sinervo:2001wv,
author = {Sinervo, A and Zamudio, KR},
title = {{The evolution of alternative reproductive strategies: Fitness differential, heritability, and genetic correlation between the sexes}},
journal = {Journal of Heredity},
year = {2001},
volume = {92},
number = {2},
pages = {198--205}
}
@article{Jombart:2009kq,
author = {Jombart, T and Pontier, D and Dufour, A-B},
title = {{Genetic markers in the playground of multivariate analysis}},
journal = {Heredity},
year = {2009},
volume = {102},
number = {4},
pages = {330--341},
month = jan
}
@article{Bordes:2007gr,
author = {Bordes, F and Blumstein, D T and Morand, S},
title = {{Rodent sociality and parasite diversity}},
journal = {Biology Letters},
year = {2007},
volume = {3},
number = {6},
pages = {692--694},
month = dec
}
@article{Simpson:1949gk,
author = {Simpson, EH},
title = {{Measurement of Diversity}},
journal = {Nature},
year = {1949},
volume = {163},
number = {4148},
pages = {688--688},
month = apr
}
@article{Macdonald:2011jw,
author = {Macdonald, Sally and Ashby, Jack},
title = {{Museums: Campus treasures}},
journal = {Nature},
year = {2011},
volume = {471},
number = {7337},
pages = {164--165},
month = mar
}
@article{Goodstadt:2010jp,
author = {Goodstadt, L},
title = {{Ruffus: a lightweight Python library for computational pipelines}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {21},
pages = {2778--2779},
month = oct
}
@article{Scott:2011ko,
author = {Scott, David and Scott, David and Shields, Alicia and Shields, Alicia and Straker, Michaela and Straker, Michaela and Dalrymple, Heidi and Dalrymple, Heidi and Dhillon, Priya K and Dhillon, Priya K and Harbinder, Singh and Harbinder, Singh},
title = {{Variation in the Male Pheromones and Mating Success of Wild Caught \textit{Drosophila} \textit{melanogaster}}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {8},
pages = {e23645},
month = aug
}
@article{Anonymous:nitohThV,
title = {{Sample size calculation based on exact test forassessing differential expression analysis inRNA-seq data}},
year = {2013},
pages = {1--7},
month = dec
}
@article{Rowe:2008gz,
author = {Rowe, Melissah and McGraw, Kevin J},
title = {{CAROTENOIDS IN THE SEMINAL FLUID OF WILD BIRDS: INTERSPECIFIC VARIATION IN FAIRY-WRENS}},
journal = {The Condor},
year = {2008},
volume = {110},
number = {4},
pages = {694--700},
month = nov
}
@article{Evans:2008dq,
author = {Evans, Jonathan P and Rutstein, Alison N},
title = {{Postcopulatory sexual selection favours intrinsically good sperm competitors}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {7},
pages = {1167--1173},
month = feb
}
@article{Kelt:1999wi,
author = {Kelt, DA and Rogovin, K and Shenbrot, G and Brown, JH},
title = {{Patterns in the structure of Asian and North American desert small mammal communities}},
journal = {Journal of Biogeography},
year = {1999},
volume = {26},
number = {4},
pages = {825--841}
}
@article{Anonymous:EAYl1r5T,
author = {Losos, Jonathan B and Arnold, Stevan J and Bejerano, Gill and Brodie III, E D and Hibbett, David and Hoekstra, Hopi E and Mindell, David P and Monteiro, Ant{\'o}nia and Moritz, Craig and Orr, H Allen and Petrov, Dmitri A and Renner, Susanne S and Ricklefs, Robert E and Soltis, Pamela S and Turner, Thomas L},
title = {{Evolutionary Biology for the 21st Century}},
journal = {PLOS Biology},
year = {2013},
volume = {11},
number = {1},
pages = {e1001466},
month = jan
}
@article{Anonymous:rZVGfRKw,
title = {{felsenstein2}},
year = {2002},
pages = {1--37},
month = jul
}
@article{Senapathy:2010hu,
author = {Senapathy, Periannan and Bhasi, Ashwini and Mattox, Jeffrey and Dhandapany, Perundurai S and Sadayappan, Sakthivel},
title = {{Targeted Genome-Wide Enrichment of Functional Regions}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {6},
pages = {e11138},
month = jun
}
@article{Anonymous:2012ui,
title = {{The genetic basis of alcoholism: multiple phenotypes, many genes, complex networks}},
year = {2012},
pages = {1--11},
month = feb
}
@article{Koutsogiannouli:2009dw,
author = {Koutsogiannouli, E A and Moutou, K A and Sarafidou, T and Stamatis, C and Spyrou, V and Mamuris, Z},
title = {{Major histocompatibility complex variation at class II DQA locus in the brown hare ( Lepus europaeus)}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {22},
pages = {4631--4649},
month = nov
}
@article{JOHNSTONE:2011ho,
author = {JOHNSTONE, K A and JOHNSTONE, K A and LUBIENIECKI, K P and LUBIENIECKI, K P and KOOP, B F and KOOP, B F and DAVIDSON, W S and DAVIDSON, W S},
title = {{Expression of olfactory receptors in different life stages and life histories of wild Atlantic salmon (Salmo salar).}},
journal = {Molecular Ecology},
year = {2011},
month = aug
}
@article{Mainguy:2009hg,
author = {Mainguy, J and Cote, S D and Festa-Bianchet, M and Coltman, D W},
title = {{Father-offspring phenotypic correlations suggest intralocus sexual conflict for a fitness-linked trait in a wild sexually dimorphic mammal}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1675},
pages = {4067--4075},
month = oct
}
@article{Boyle:2008hm,
author = {Boyle, Alan P. and Davis, Sean and Davis, Sean and Shulha, Hennady P. and Shulha, Hennady P. and Meltzer, Paul and Meltzer, Paul and Margulies, Elliott H and Margulies, Elliott H and Weng, Zhiping and Weng, Zhiping and Furey, Terrence S. and Crawford, Gregory E.},
title = {{High-resolution mapping and characterization of open chromatin across the genome}},
journal = {Cell},
year = {2008},
volume = {132},
number = {2},
pages = {311--322}
}
@article{Stamatakis:2006wc,
author = {Stamatakis, A},
title = {{RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models}},
journal = {Bioinformatics (Oxford, England)},
year = {2006}
}
@article{Hughes:2008dh,
author = {Hughes, A L},
title = {{The origin of adaptive phenotypes}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {36},
pages = {13193--13194},
month = sep
}
@article{Lank:1992ul,
author = {Lank, DB and Smith, CM},
title = {{FEMALES PREFER LARGER LEKS - FIELD EXPERIMENTS WITH RUFFS (PHILOMACHUS-PUGNAX)}},
journal = {Behavioral Ecology and Sociobiology},
year = {1992},
volume = {30},
number = {5},
pages = {323--329}
}
@article{Simcox:2005fj,
author = {Simcox, Helen and Colegrave, Nick and Heenan, Adel and Howard, Chris and Braithwaite, Victoria A},
title = {{Context-dependent male mating preferences for unfamiliar females}},
journal = {Animal Behaviour},
year = {2005},
volume = {70},
number = {6},
pages = {1429--1437},
month = dec
}
@article{Kishino:1989wy,
author = {Kishino, H and Hasegawa, M},
title = {{Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea.}},
journal = {Journal of Molecular Evolution},
year = {1989},
volume = {29},
number = {2},
pages = {170--179},
month = aug
}
@article{Dohm:2008kya,
author = {Dohm, Juliane C and Lottaz, Claudio and Borodina, Tatiana and Himmelbauer, Heinz},
title = {{Substantial biases in ultra-short read data sets from high-throughput DNA sequencing}},
journal = {Nucleic Acids Research},
year = {2008},
volume = {36},
number = {16},
pages = {e105--e105},
month = sep
}
@article{Weber:2009em,
author = {Weber, Jesse N and Hoekstra, Hopi E},
title = {{The evolution of burrowing behaviour in deer mice (genus \textit{Peromyscus})}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {3},
pages = {603--609},
month = mar
}
@article{Stewart:2011hf,
author = {Stewart, L and Hindmarch, C C T and Qiu, J and Tung, Y C L and Yeo, G S H and Murphy, D},
title = {{Hypothalamic Transcriptome Plasticity in Two Rodent Species Reveals Divergent Differential Gene Expression But Conserved Pathways}},
journal = {Journal of Neuroendocrinology},
year = {2011},
volume = {23},
number = {2},
pages = {177--185},
month = jan
}
@article{Bussiere:2005kj,
author = {Bussiere, L F},
title = {{Preferred males are not always good providers: female choice and male investment in tree crickets}},
journal = {Behavioral Ecology},
year = {2004},
volume = {16},
number = {1},
pages = {223--231},
month = jul
}
@article{Jansen:2001wk,
author = {Jansen, S and Jansen, S and Ekhlasi-Hundrieser, M and Ekhlasi-Hundrieser, M and T{\"o}pfer-Petersen, E and T{\"o}pfer-Petersen, E},
title = {{Sperm adhesion molecules: structure and function}},
journal = {Cells, tissues, organs},
year = {2001},
volume = {168},
number = {1-2},
pages = {82--92}
}
@article{Novembre:2010ic,
author = {Novembre, John and Di Rienzo, Anna},
title = {{Spatial patterns of variation due to natural selection in humans}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {11},
pages = {745--755},
month = oct
}
@article{Kempenaers:1999uw,
author = {Kempenaers, B and Congdon, B and Boag, P and Robertson, RJ},
title = {{Extrapair paternity and egg hatchability in tree swallows: evidence for the genetic compatibility hypothesis?}},
journal = {Behavioral Ecology},
year = {1999},
volume = {10},
number = {3},
pages = {304--311}
}
@article{Risso:2011fc,
author = {Risso, Davide and Risso, Davide and Schwartz, Katja and Schwartz, Katja and Sherlock, Gavin and Sherlock, Gavin and Dudoit, Sandrine},
title = {{GC-Content Normalization for RNA-Seq Data}},
journal = {BMC Bioinformatics},
year = {2011},
volume = {12},
number = {1},
pages = {480}
}
@article{Yendrek:2012bd,
author = {Yendrek, Craig R and Ainsworth, Elizabeth A and Thimmapuram, Jyothi},
title = {{The bench scientist's guide to statistical analysis of RNA-Seq data}},
journal = {BMC Research Notes},
year = {2012},
volume = {5},
number = {1},
pages = {506}
}
@article{Gill:1985tv,
author = {Gill, P and Jeffreys, A and Werrett, D},
title = {{Forensic application of DNA{\textquoteleft}fingerprints{\textquoteright}}},
journal = {Nature},
year = {1985}
}
@article{Kassen:2004hg,
author = {Kassen, Rees and Rainey, Paul B},
title = {{THE ECOLOGY AND GENETICS OF MICROBIAL DIVERSITY}},
journal = {Annual Review of Microbiology},
year = {2004},
volume = {58},
number = {1},
pages = {207--231},
month = oct
}
@article{BAUM:1992tf,
author = {BAUM, D and BAUM, D},
title = {{PHYLOGENETIC SPECIES CONCEPTS}},
journal = {Trends In Ecology {\&} Evolution},
year = {1992},
volume = {7},
number = {1},
pages = {1--2}
}
@article{Altshuler:2005tq,
author = {Altshuler, E and Ramos, O and Nunez, Y and Fernandez, J and Batista-Leyva, AJ and Noda, C},
title = {{Symmetry breaking in escaping ants}},
journal = {The American Naturalist},
year = {2005},
volume = {166},
number = {6},
pages = {643--649}
}
@article{Koboldt:2010db,
author = {Koboldt, D C and Ding, L and Mardis, E R and Wilson, R K},
title = {{Challenges of sequencing human genomes}},
journal = {Briefings In Bioinformatics},
year = {2010},
volume = {11},
number = {5},
pages = {484--498},
month = sep
}
@article{Bouckaert:2010dv,
author = {Bouckaert, Remco R and Bouckaert, Remco R},
title = {{DensiTree: making sense of sets of phylogenetic trees.}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {10},
pages = {1372--1373},
month = may
}
@article{Han:2010ic,
author = {Han, Kin-Lan and Robbins, Mark B and Braun, Michael J},
title = {{A multi-gene estimate of phylogeny in the nightjars and nighthawks (Caprimulgidae)}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2010},
volume = {55},
number = {2},
pages = {443--453},
month = may
}
@article{Bassi:2007kc,
author = {Bassi, Sebastian},
title = {{A Primer on Python for Life Science Researchers}},
journal = {PLOS Computational Biology},
year = {2007},
volume = {3},
number = {11},
pages = {e199}
}
@article{Klemme:2007jr,
author = {Klemme, Ines and Eccard, Jana Anja and Yl{\"o}nen, Hannu},
title = {{Why do female bank voles, Clethrionomys glareolus, mate multiply?}},
journal = {Animal Behaviour},
year = {2007},
volume = {73},
number = {4},
pages = {623--628},
month = apr
}
@article{Choi:2009bs,
author = {Choi, M and Scholl, U I and Ji, W and Liu, T and Tikhonova, I R and Zumbo, P and Nayir, A and Bakkaloglu, A and Ozen, S and Sanjad, S and Nelson-Williams, C and Farhi, A and Mane, S and Lifton, R P},
title = {{Genetic diagnosis by whole exome capture and massively parallel DNA sequencing}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {45},
pages = {19096--19101},
month = nov
}
@article{Mares:1977cv,
author = {Mares, M A},
title = {{Water economy and salt balance in a south american desert rodent, Eligmodontia typus}},
journal = {Comparative Biochemistry and Physiology Part A: {\ldots}},
year = {1977},
volume = {56},
number = {3},
pages = {325--332}
}
@article{AddoBediako:2001we,
author = {Addo-Bediako, A and Addo-Bediako, A and Chown, SL and Chown, SL and Gaston, KJ and Gaston, KJ},
title = {{Revisiting water loss in insects: a large scale view}},
journal = {Journal of Insect Physiology},
year = {2001},
volume = {47},
number = {12},
pages = {1377--1388}
}
@article{Hotzy:2009db,
author = {Hotzy, Cosima and Arnqvist, Goran},
title = {{Sperm Competition Favors Harmful Males in Seed Beetles}},
journal = {Current Biology},
year = {2009},
volume = {19},
number = {5},
pages = {404--407},
month = mar
}
@article{Anonymous:2014ff,
title = {{OP-CBIO140011 1241..1249}},
year = {2014},
pages = {1--9},
month = apr
}
@techreport{Cleary:2014iq,
author = {Cleary, J G and Braithwaite, R and Gaastra, K and Hilbush, B S and Inglis, S and Irvine, S A and Jackson, A and Littin, R and Nohzadeh-Malakshah, S and Shah, M and Rathod, M and Ware, D and Trigg, L and De La Vega, F M},
title = {{Joint variant and \textit{de novo} mutation identification on pedigrees from high-throughput sequencing data}},
year = {2014},
month = jan
}
@article{Roberts:2009dx,
author = {Roberts, S Craig},
title = {{Complexity and context of MHC-correlated mating preferences in wild populations}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {15},
pages = {3121--3123},
month = aug
}
@article{Becks:2010im,
author = {Becks, Lutz and Agrawal, Aneil F},
title = {{Higher rates of sex evolve in spatially heterogeneous environments}},
journal = {Nature},
year = {2010},
volume = {468},
number = {7320},
pages = {89--92},
month = oct
}
@article{Anonymous:-99WmEJr,
author = {Hensman, James and Glaus, Peter and Honkela, Antti and Rattray, Magnus},
title = {{Fast Approximate Inference of Transcript Expression Levels from RNA-seq Data}},
journal = {arXiv.org},
year = {2013},
eprint = {1308.5953v1},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = aug
}
@article{McGowen:2012bn,
author = {McGowen, M R and Grossman, L I and Wildman, D E},
title = {{Dolphin genome provides evidence for adaptive evolution of nervous system genes and a molecular rate slowdown}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1743},
pages = {3643--3651},
month = aug
}
@article{DeBry:2001vi,
author = {DeBry, RW and Seshadri, S},
title = {{Nuclear intron sequences for phylogenetics of closely related mammals: An example using the phylogeny of Mus}},
journal = {Journal of Mammalogy},
year = {2001},
volume = {82},
number = {2},
pages = {280--288}
}
@article{Korb:2010jz,
author = {Korb, Judith and Foster, Kevin R},
title = {{Ecological competition favours cooperation in termite societies}},
journal = {Ecology Letters},
year = {2010},
volume = {13},
number = {6},
pages = {754--760},
month = may
}
@article{Dunn:2001ul,
author = {Dunn, PO and Whittingham, LA and Pitcher, TE},
title = {{Mating systems, sperm competition, and the evolution of sexual dimorphism in birds}},
journal = {Evolution},
year = {2001},
volume = {55},
number = {1},
pages = {161--175}
}
@article{KosakovskyPond:2006hh,
author = {Kosakovsky Pond, Sergei L and Kosakovsky Pond, Sergei L and Frost, Simon D W and Frost, Simon D W and Grossman, Zehava and Grossman, Zehava and Gravenor, Michael B and Gravenor, Michael B and Richman, Douglas D and Richman, Douglas D and Brown, andrew J Leigh and Brown, andrew J Leigh},
title = {{Adaptation to Different Human Populations by HIV-1 Revealed by Codon-Based Analyses}},
journal = {PLOS Computational Biology},
year = {2006},
volume = {2},
number = {6},
pages = {530--538}
}
@article{vanOosterhout:2009dl,
author = {van Oosterhout, Cock},
title = {{A new theory of MHC evolution: beyond selection on the immune genes}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1657},
pages = {657--665}
}
@article{IVENS:2012ip,
author = {IVENS, A B F and IVENS, A B F and KRONAUER, D J C and KRONAUER, D J C and PEN, I and PEN, I and WEISSING, F J and WEISSING, F J and Boomsma, J J},
title = {{Reproduction and dispersal in an ant-associated root aphid community}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = jul
}
@article{Tsuruda:2012jl,
author = {Tsuruda, Jennifer M and Tsuruda, Jennifer M and Harris, Jeffrey W and Harris, Jeffrey W and Bourgeois, Lanie and Bourgeois, Lanie and Danka, Robert G and Danka, Robert G and Hunt, Greg J},
title = {{High-Resolution Linkage Analyses to Identify Genes That Influence Varroa Sensitive Hygiene Behavior in Honey Bees}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {11},
pages = {e48276},
month = nov
}
@article{Adelson:2009bp,
author = {Adelson, D L and Raison, J M and Edgar, R C},
title = {{Characterization and distribution of retrotransposons and simple sequence repeats in the bovine genome}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {31},
pages = {12855--12860},
month = aug
}
@article{Feil:2004fx,
author = {FEIL, E and ENRIGHT, M},
title = {{Analyses of clonality and the evolution of bacterial pathogens}},
journal = {Current Opinion in Microbiology},
year = {2004},
volume = {7},
number = {3},
pages = {308--313},
month = jun
}
@article{Pichler:2001tu,
author = {Pichler, F and Pichler, F and Dalebout, M and Dalebout, M},
title = {{Nondestructive DNA extraction from sperm whale teeth and scrimshaw}},
journal = {Molecular Ecology},
year = {2001}
}
@article{Kundu:2004ht,
author = {Kundu, Samit and Kundu, Samit and Faulkes, Christopher G},
title = {{Patterns of MHC selection in African mole-rats, family Bathyergidae: the effects of sociality and habitat.}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2004},
volume = {271},
number = {1536},
pages = {273--278},
month = feb
}
@article{DOBZHANST:1967uy,
author = {DOBZHANST and DOBZHANST and PAVLOVSKO and PAVLOVSKO},
title = {{REPEATED MATING AND SPERM MIXING IN DROSOPHILA PSEUDOOBSCURA}},
journal = {The American Naturalist},
year = {1967},
volume = {101},
number = {922},
pages = {527--{\&}}
}
@article{Reid:2012ir,
author = {Reid, J M and Sardell, R J},
title = {{Indirect selection on female extra-pair reproduction? Comparing the additive genetic value of maternal half-sib extra-pair and within-pair offspring}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1734},
pages = {1700--1708},
month = mar
}
@article{Chuong:2010hr,
author = {Chuong, Edward B and Chuong, Edward B and Tong, Wenfei and Tong, Wenfei and Hoekstra, Hopi E},
title = {{Maternal-fetal conflict: rapidly evolving proteins in the rodent placenta.}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {6},
pages = {1221--1225},
month = jun
}
@article{tHoen:2008hn,
author = {'t Hoen, P A C and Ariyurek, Y and Thygesen, H H and Vreugdenhil, E and Vossen, R H A M and de Menezes, R X and Boer, J M and van Ommen, G J B and den Dunnen, J T},
title = {{Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms}},
journal = {Nucleic Acids Research},
year = {2008},
volume = {36},
number = {21},
pages = {e141--e141},
month = oct
}
@article{LopezGonzalez:2013eh,
author = {L{\'o}pez-Gonz{\'a}lez, Celia and L{\'o}pez-Gonz{\'a}lez, Celia and Garc{\'\i}a-Mendoza, Diego F and Garc{\'\i}a-Mendoza, Diego F and Correa-Ram{\'\i}rez, Miguel M and Correa-Ram{\'\i}rez, Miguel M},
title = {{Morphologic characterization of \textit{Peromyscus} schmidlyi(Rodentia: Cricetidae), an endemic of the Sierra Madre Occidental, Mexico}},
journal = {Journal of Mammalogy},
year = {2013},
volume = {94},
number = {4},
pages = {923--937},
month = aug
}
@article{Xu:2010gg,
author = {Xu, Shuhua and Gupta, Sanchit and JIN, L I},
title = {{PEAS V1.0: a package for elementary analysis of SNP data}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {6},
pages = {1085--1088},
month = apr
}
@article{Oppelt:2010eb,
author = {Oppelt, Claus and Oppelt, Claus and Starkloff, Anett and Starkloff, Anett and Rausch, Philipp and Rausch, Philipp and von Holst, Dietrich and von Holst, Dietrich and R{\"o}del, Heiko G and R{\"o}del, Heiko G},
title = {{Major histocompatibility complex variation and age-specific endoparasite load in subadult European rabbits.}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {19},
pages = {4155--4167},
month = aug
}
@article{Do:2013dr,
author = {Do, C and Do, C and Waples, R S and Waples, R S and Peel, D and Peel, D and Macbeth, G M and Macbeth, G M and Tillett, B J and Tillett, B J and Ovenden, J R and Ovenden, J R},
title = {{NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size ( Ne) from genetic data}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = aug
}
@article{Mcphee:2008ek,
author = {Mcphee, Megan V and Osborne, Megan J and Turner, Thomas F},
title = {{Genetic diversity, population structure, and demographic history of the Rio Grande sucker, Catostomus (Pantosteus) plebeius, in New Mexico}},
journal = {Copeia},
year = {2008},
number = {1},
pages = {191--199}
}
@article{Canals:2009kd,
author = {Canals, M and Figueroa, D P and Miranda, J P and Sabat, P},
title = {{ARTICLE IN PRESS}},
journal = {Journal of Thermal Biology},
year = {2009},
volume = {34},
number = {6},
pages = {310--314},
month = aug
}
@article{Dowling:2006vm,
author = {Dowling, Damian K and Mulder, Raoul A},
title = {{Red plumage and its association with reproductive success in red-capped robins}},
journal = {Annales Zoologici Fennici},
year = {2006},
volume = {43},
number = {4},
pages = {311--321}
}
@article{DESROCHERS:2010vv,
author = {DESROCHERS, A},
title = {{Morphological response of songbirds to 100 years of landscape change in North America}},
journal = {Ecology},
year = {2010},
volume = {91},
number = {6},
pages = {1577--1582}
}
@article{Unckless:2009dl,
author = {Unckless, R L and Orr, H A},
title = {{The Population Genetics of Adaptation: Multiple Substitutions on a Smooth Fitness Landscape}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {3},
pages = {1079--1086},
month = nov
}
@article{Myers:2004jq,
journal = {Molecular Ecology},
volume = {13},
number = {7}
}
@article{Crawford:2010ez,
author = {Crawford, K M and Whitney, K D},
title = {{Population genetic diversity influences colonization success}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {6},
pages = {1253--1263},
month = mar
}
@article{Pigliucci:2005jo,
author = {Pigliucci, Massimo},
title = {{Expanding evolution}},
journal = {Nature},
year = {2005},
volume = {435},
number = {7042},
pages = {565--566},
month = jun
}
@article{DeSilva:2011dw,
author = {DeSilva, Jeremy M},
title = {{A shift toward birthing relatively large infants early in human evolution.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {3},
pages = {1022--1027},
month = jan
}
@article{Terborgh:1985wb,
author = {Terborgh, J and Terborgh, J and Goldizen, A W},
title = {{On the mating system of the cooperatively breeding saddle-backed tamarin (\emph{Saguinus fuscicollis})}},
journal = {Behavioral Ecology and Sociobiology},
year = {1985},
volume = {16},
number = {4},
pages = {293--299}
}
@article{Loiselle:2007kx,
author = {Loiselle, B A and Ryder, T B and Duraes, R and Tori, W and Blake, J G and Parker, P G},
title = {{Kin selection does not explain male aggregation at leks of 4 manakin species}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {2},
pages = {287--291},
month = feb
}
@article{jaltman:2010um,
author = {{jaltman}},
title = {{TruSeq_RNA_SamplePrep.book}},
year = {2010},
pages = {1--118},
month = nov
}
@article{Angert:2008cc,
author = {Angert, Amy L and Bradshaw Jr, H D and Schemske, Douglas W},
title = {{USING EXPERIMENTAL EVOLUTION TO INVESTIGATE GEOGRAPHIC RANGE LIMITS IN MONKEYFLOWERS}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {10},
pages = {2660--2675},
month = oct
}
@article{Outlaw:2010jo,
author = {Outlaw, D C and Ricklefs, R E},
title = {{Comparative Gene Evolution in Haemosporidian (Apicomplexa) Parasites of Birds and Mammals}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {3},
pages = {537--542},
month = feb
}
@article{Carninci:2006in,
author = {Carninci, Piero and Sandelin, Albin and Lenhard, Boris and Katayama, Shintaro and Shimokawa, Kazuro and Ponjavic, Jasmina and Semple, Colin A M and Taylor, Martin S and Engstr{\"o}m, P{\"a}r G and Frith, Martin C and Forrest, Alistair R R and Alkema, Wynand B and Tan, Sin Lam and Plessy, Charles and Kodzius, Rimantas and Ravasi, Timothy and Kasukawa, Takeya and Fukuda, Shiro and Kanamori-Katayama, Mutsumi and Kitazume, Yayoi and Kawaji, Hideya and Kai, Chikatoshi and Nakamura, Mari and Konno, Hideaki and Nakano, Kenji and Mottagui-Tabar, Salim and Arner, Peter and Chesi, Alessandra and Gustincich, Stefano and Persichetti, Francesca and Suzuki, Harukazu and Grimmond, Sean M and Wells, Christine A and Orlando, Valerio and Wahlestedt, Claes and Liu, Edison T and Harbers, Matthias and Kawai, Jun and Bajic, Vladimir B and Hume, David A and Hayashizaki, Yoshihide},
title = {{Genome-wide analysis of mammalian promoter architecture and evolution}},
journal = {Nature Genetics},
year = {2006},
volume = {38},
number = {6},
pages = {626--635},
month = apr
}
@article{Arnqvist:1999vt,
author = {Arnqvist, G and Danielsson, I},
title = {{Copulatory behavior, genital morphology, and male fertilization success in water striders}},
journal = {Evolution},
year = {1999},
volume = {53},
number = {1},
pages = {147--156}
}
@article{Williams:2009ig,
author = {Williams, Thomas M and Carroll, Sean B},
title = {{Genetic and molecular insights into the development and evolution of sexual dimorphism.}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {11},
pages = {797--804},
month = nov
}
@article{Degrange:2010jo,
author = {Degrange, Federico J and Tambussi, Claudia P and Moreno, Karen and Witmer, Lawrence M and Wroe, Stephen},
title = {{Mechanical Analysis of Feeding Behavior in the Extinct {\textquotedblleft}Terror Bird{\textquotedblright} andalgalornis steulleti (Gruiformes: Phorusrhacidae)}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {8},
pages = {e11856},
month = aug
}
@article{Woodard:2011jv,
author = {Woodard, S Hollis and Woodard, S Hollis and Fischman, Brielle J and Fischman, Brielle J and Venkat, Aarti and Venkat, Aarti and Hudson, Matt E and Hudson, Matt E and Varala, Kranthi and Varala, Kranthi and Cameron, Sydney A and Cameron, Sydney A and Clark, andrew G and Robinson, Gene E},
title = {{Genes involved in convergent evolution of eusociality in bees.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {18},
pages = {7472--7477},
month = may
}
@article{Bressac:2009kj,
author = {Bressac, Christophe and Thi Khanh, Hong Do and Chevrier, Claude},
title = {{Effects of age and repeated mating on male sperm supply and paternity in a parasitoid wasp}},
journal = {Entomologia Experimentalis Et Applicata},
year = {2009},
volume = {130},
number = {2},
pages = {207--213},
month = feb
}
@article{Brown:2010gx,
author = {Brown, S P and Taylor, P D},
title = {{Joint evolution of multiple social traits: a kin selection analysis}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {277},
number = {1680},
pages = {415--422},
month = dec
}
@article{CasasMarce:2010gh,
author = {Casas-Marce, M and Revilla, E and Godoy, J A},
title = {{Searching for DNA in museum specimens: a comparison of sources in a mammal species}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {3},
pages = {502--507},
month = may
}
@article{Huang:1999wb,
author = {Huang, X and Huang, X and Madan, A and Madan, A},
title = {{CAP3: A DNA sequence assembly program.}},
journal = {Genome Research},
year = {1999},
volume = {9},
number = {9},
pages = {868--877},
month = sep
}
@article{Bejerano:2004dh,
author = {Bejerano, G},
title = {{Ultraconserved Elements in the Human Genome}},
journal = {Science (New York, NY)},
year = {2004},
volume = {304},
number = {5675},
pages = {1321--1325},
month = may
}
@article{Jennings:2009hb,
author = {Jennings, Paul and Aydin, Sonia and Bennett, Jason and Mcbride, Rachael and Weiland, Christina and Tuite, Niamh and Gruber, Leonhard N and Perco, Paul and Gaora, Peadar O and Ellinger-Ziegelbauer, Heidrun and Ahr, Hans-Juergen and Kooten, Cees Van and Daha, Mohamed R and Prieto, Pilar and Ryan, Michael P and Pfaller, Walter and Mcmorrow, Tara},
title = {{Inter-laboratory comparison of human renal proximal tubule (HK-2) transcriptome alterations due to Cyclosporine A exposure and medium exhaustion}},
journal = {Toxicology in Vitro},
year = {2009},
volume = {23},
number = {3},
pages = {486--499},
month = apr
}
@article{Feldman:2006fl,
author = {Feldman, Chris R and SPICER, GREG S},
title = {{Comparative phylogeography of woodland reptiles in California: repeated patterns of cladogenesis and population expansion}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {8},
pages = {2201--2222},
month = may
}
@article{Lutz:1996vs,
author = {Lutz, B and Lu, HC and Eichele, G and Eichele, G and Miller, D and Miller, D and Kaufman, TC and Kaufman, TC},
title = {{Rescue of \textit{Drosophila} labial null mutant by the chicken ortholog Hoxb-1 demonstrates that the function of Hox genes is phylogenetically conserved}},
journal = {Genes {\&} Development},
year = {1996},
volume = {10},
number = {2},
pages = {176--184}
}
@article{Planet:2012co,
author = {Planet, E and Planet, E and Attolini, C S O and Attolini, C S O and Reina, O and Reina, O and Flores, O and Flores, O and Rossell, D and Rossell, D},
title = {{htSeqTools: high-throughput sequencing quality control, processing and visualization in R}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {4},
pages = {589--590},
month = feb
}
@article{Peng:2011ji,
author = {Peng, Y and Yang, Z and Zhang, H and Cui, C and Qi, X and Luo, X and Tao, X and Wu, T and Ouzhuluobu and Basang and Ciwangsangbu and Danzengduojie and Chen, H and Shi, H and Su, B},
title = {{Genetic Variations in Tibetan Populations and High-Altitude Adaptation at the Himalayas}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {2},
pages = {1075--1081},
month = jan
}
@article{Tirado:2008hh,
author = {Tirado, C and Cort{\'e}s, A and Bozinovic, F},
title = {{Water balance in two South American Phyllotis desert rodents, P. xanthopygus rupestris and P. darwini darwini}},
journal = {Journal of Arid Environments},
year = {2008},
volume = {72},
number = {5},
pages = {664--670},
month = may
}
@article{Delong:2009hw,
author = {Delong, Edward F},
title = {{The microbial ocean from genomes to biomes}},
journal = {Nature},
year = {2009},
volume = {459},
number = {7244},
pages = {200--206},
month = may
}
@article{Janssen:2008th,
author = {Janssen, Michael H and Arcese, Peter and Sloan, Mark S and Jewell, Kelly J},
title = {{Polyandry and Sex Ratio in the Song Sparrow}},
journal = {Wilson Journal of Ornithology},
year = {2008},
volume = {120},
number = {2},
pages = {395--398}
}
@article{MAHER:1994wa,
author = {MAHER, CR and MAHER, CR},
title = {{PRONGHORN MALE SPATIAL-ORGANIZATION - POPULATION DIFFERENCES IN DEGREE OF NONTERRITORIALITY}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {1994},
volume = {72},
number = {3},
pages = {455--464}
}
@article{Cassens:2003eo,
author = {Cassens, I and van Waerebeek, K and Best, P B and Crespo, E A and Reyes, J and Milinkovitch, M C},
title = {{The phylogeography of dusky dolphins (Lagenorhynchus obscurus): a critical examination of network methods and rooting procedures}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {7},
pages = {1781--1792},
month = jul
}
@article{anderson:2002wx,
author = {anderson, MJ and Dixson, AF},
title = {{Sperm competition - Motility and the midpiece in primates}},
journal = {Nature},
year = {2002},
volume = {416},
number = {6880},
pages = {496--496}
}
@article{Shtutman:2010ca,
author = {Shtutman, M and Maliyekkel, A and Shao, Y and Carmack, C S and Baig, M and Warholic, N and Cole, K and Broude, E V and Harkins, T T and Ding, Y and Roninson, I B},
title = {{Function-based gene identification using enzymatically generated normalized shRNA library and massive parallel sequencing}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {16},
pages = {7377--7382},
month = apr
}
@misc{image:lyYTomdY,
title = {{image}},
month = jun,
year = {2014}
}
@article{Busch:2008dv,
author = {Busch, Joseph D and Waser, Peter M and Dewoody, J andrew},
title = {{Characterization of expressed class II MHC sequences in the banner-tailed kangaroo rat (\textit{Dipodomys} spectabilis) reveals multiple DRB loci.}},
journal = {Immunogenetics},
year = {2008},
volume = {60},
number = {11},
pages = {677--688},
month = nov
}
@article{Axelrod:1981vw,
author = {Axelrod, R and Hamilton, W D},
title = {{The evolution of cooperation}},
journal = {Science (New York, NY)},
year = {1981},
volume = {211},
number = {4489},
pages = {1390--1396},
month = mar
}
@article{Jin:2012cx,
author = {Jin, Wenfei and Xu, Shuhua and Wang, Haifeng and Yu, Yongguo and Shen, Yiping and Wu, Bailin and Jin, Li},
title = {{Genome-wide detection of natural selection in African Americans pre- and post-admixture.}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {3},
pages = {519--527},
month = mar
}
@article{Fitzgerald:2002wb,
author = {Fitzgerald, T D and Jeffers, P M and Mantella, D},
title = {{Depletion of host-derived cyanide in the gut of the eastern tent caterpillar, \textit{Malacosoma} \textit{americanum}.}},
journal = {Journal of Chemical Ecology},
year = {2002},
volume = {28},
number = {2},
pages = {257--268},
month = feb
}
@article{Nowak:2010jl,
author = {Nowak, Martin A and Tarnita, Corina E and Tarnita, Corina E and Wilson, Edward O and Wilson, Edward O},
title = {{The evolution of eusociality.}},
journal = {Nature},
year = {2010},
volume = {466},
number = {7310},
pages = {1057--1062},
month = aug
}
@article{Lee:2008hd,
author = {Lee, Aline Magdalena and Engen, Steinar and S{\ae}ther, Bernt-Erik},
title = {{Understanding mating systems: A mathematical model of the pair formation process}},
journal = {Theoretical Population Biology},
year = {2008},
volume = {73},
number = {1},
pages = {112--124},
month = feb
}
@article{Vredevoe:2004vp,
author = {Vredevoe, LK and Vredevoe, LK and Stevens, JR and Stevens, JR and Schneider, BS and Schneider, BS},
title = {{Detection and characterization of Borrelia bissettii in rodents from the central California coast}},
journal = {Journal of Medical Entomology},
year = {2004},
volume = {41},
number = {4},
pages = {736--745}
}
@article{Doyle:2003vu,
author = {Doyle, CK and Davis, BK and Cook, RG and Rich, RR and Rodgers, JR},
title = {{Hyperconservation of the N-formyl peptide binding site of M3: Evidence that M3 is an old eutherian molecule with conserved recognition of a pathogen-associated molecular pattern}},
journal = {Journal of Immunology},
year = {2003},
volume = {171},
number = {2},
pages = {836--844}
}
@article{Perezgonzalez:2009hs,
author = {Perez-gonzalez, J and Mateos, C and Carranza, J},
title = {{Polygyny can increase rather than decrease genetic diversity contributed by males relative to females: evidence from red deer}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {8},
pages = {1591--1600},
month = apr
}
@article{Endler:2007de,
author = {Endler, Annett and H{\"o}lldobler, Bert and Liebig, J{\"u}rgen},
title = {{Lack of physical policing and fertility cues in egg-laying workers of the ant Camponotus floridanus}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {5},
pages = {1171--1180},
month = nov
}
@article{Cornell:2003ur,
author = {Cornell, HV and Cornell, HV and Hawkins, BA and Hawkins, BA},
title = {{Herbivore responses to plant secondary compounds: A test of phytochemical coevolution theory}},
journal = {The American Naturalist},
year = {2003},
volume = {161},
number = {4},
pages = {507--522}
}
@article{Lozupone:2011dh,
author = {Lozupone, Catherine and Lladser, Manuel E and Lladser, Manuel E and Knights, Dan and Knights, Dan and Stombaugh, Jesse and Stombaugh, Jesse and Knight, Rob},
title = {{UniFrac: an effective distance metric for microbial community comparison.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {2},
pages = {169--172},
month = feb
}
@article{Anonymous:oGHQXdQy,
title = {{Baa.pl: A tool to evaluate}},
year = {2013},
pages = {1--9},
month = sep
}
@article{Eriksson:2009kx,
author = {Eriksson, A and Mehlig, B and Panova, M and andre, C and Johannesson, K},
title = {{Multiple paternity: determining the minimum number of sires of a large brood}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {2},
pages = {282--291},
month = mar
}
@article{Schatz:2009ga,
author = {Schatz, M C},
title = {{CloudBurst: highly sensitive read mapping with MapReduce}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {11},
pages = {1363--1369},
month = may
}
@article{Bo:1994kv,
author = {B{\"o}, Lars and B{\"o}, Lars and M{\"o}rk, Sverre and M{\"o}rk, Sverre and Kong, Pei Ann and Kong, Pei Ann and Nyland, Harald and Nyland, Harald and Pardo, Carlos A and Pardo, Carlos A and Trapp, Bruce D and Trapp, Bruce D},
title = {{Detection of MHC class II-antigens on macrophages and microglia, but not on astrocytes and endothelia in active multiple sclerosis lesions}},
journal = {Journal of Neuroimmunology},
year = {1994},
volume = {51},
number = {2},
pages = {135--146},
month = may
}
@article{WATTS:1992wb,
author = {WATTS, CH and WATTS, CH and MAY, RM and MAY, RM},
title = {{THE INFLUENCE OF CONCURRENT PARTNERSHIPS ON THE DYNAMICS OF HIV/AIDS}},
journal = {Mathematical Biosciences},
year = {1992},
volume = {108},
number = {1},
pages = {89--104}
}
@article{Yuan:2011ep,
author = {Yuan, Lihong and Yuan, Lihong and Zhao, Xudong and Zhao, Xudong and Lin, Benfu and Lin, Benfu and Rossiter, Stephen J and He, Lingjiang and He, Lingjiang and Zuo, Xueguo and Zuo, Xueguo and He, Guimei and He, Guimei and Jones, Gareth and Geiser, Fritz and Geiser, Fritz and Zhang, Shuyi and Zhang, Shuyi},
title = {{Adaptive evolution of leptin in heterothermic bats.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {11},
pages = {e27189}
}
@article{Neafsey:2010ij,
author = {Neafsey, D E and Lawniczak, M K N and Park, D J and Redmond, S N and Coulibaly, M B and Traore, S F and Sagnon, N and Costantini, C and Johnson, C and Wiegand, R C and Collins, F H and Lander, E S and Wirth, D F and Kafatos, F C and Besansky, N J and Christophides, G K and Muskavitch, M A T},
title = {{SNP Genotyping Defines Complex Gene-Flow Boundaries Among African Malaria Vector Mosquitoes}},
journal = {Science (New York, NY)},
year = {2010},
volume = {330},
number = {6003},
pages = {514--517},
month = oct
}
@article{Reers:2011fx,
author = {Reers, Hendrik and Reers, Hendrik and Jacot, Alain and Forstmeier, Wolfgang},
title = {{Do zebra finch parents fail to recognise their own offspring?}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {4},
pages = {e18466}
}
@article{Cezilly:2000tf,
author = {Cezilly, F and Preault, M and Dubois, F and Faivre, B and Patris, B},
title = {{Pair-bonding in birds and the active role of females: a critical review of the empirical evidence}},
journal = {Behavioural Processes},
year = {2000},
volume = {51},
number = {1-3},
pages = {83--92}
}
@article{Duval:2008bn,
author = {DuVal, E H and Kempenaers, B},
title = {{Sexual selection in a lekking bird: the relative opportunity for selection by female choice and male competition}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1646},
pages = {1995--2003},
month = sep
}
@article{Reeve:1998tw,
author = {Reeve, HK and Emlen, ST and Keller, L},
title = {{Reproductive sharing in animal societies: reproductive incentives or incomplete control by dominant breeders?}},
journal = {Behavioral Ecology},
year = {1998},
volume = {9},
number = {3},
pages = {267--278}
}
@article{CluttonBrock:2005jv,
author = {CLUTTONBROCK, T and RUSSELL, A and Sharpe, L and JORDAN, N},
title = {{{\textquoteleft}False feeding{\textquoteright} and aggression in meerkat societies}},
journal = {Animal Behaviour},
year = {2005},
volume = {69},
number = {6},
pages = {1273--1284},
month = jun
}
@article{HARTLEY:1995vx,
author = {HARTLEY, IR and Davies, NB and HATCHWELL, BJ and DESROCHERS, A and NEBEL, D and Burke, T},
title = {{THE POLYGYNANDROUS MATING SYSTEM OF THE ALPINE ACCENTOR, PRUNELLA-COLLARIS .2. MULTIPLE PATERNITY AND PARENTAL EFFORT}},
journal = {Animal Behaviour},
year = {1995},
volume = {49},
number = {3},
pages = {789--803}
}
@article{CordobaAguilar:2003kz,
author = {C{\'o}rdoba-Aguilar, Alex and Contreras-Gardu{\~n}o, Jorge},
title = {{Sexual conflict}},
journal = {Trends In Ecology {\&} Evolution},
year = {2003},
volume = {18},
number = {9},
pages = {439--440},
month = sep
}
@article{Bjork:2007cd,
author = {Bjork, A and Starmer, W T and Higginson, D M and Rhodes, C J and Pitnick, S},
title = {{Complex interactions with females and rival males limit the evolution of sperm offence and defence}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1619},
pages = {1779--1788},
month = jul
}
@article{Smith:1997wz,
author = {Smith, FA},
title = {{Neotoma cinerea}},
journal = {Mammalian Species},
year = {1997},
pages = {1--8}
}
@article{Huang:2013kf,
author = {Huang, You-Jun and Liu, Li-Li and Huang, Jian-Qin and Wang, Zheng-Jia and Chen, Fang-Fang and Zhang, Qi-Xiang and Zheng, Bing-Song and Chen, Ming},
title = {{Use of transcriptome sequencing to understand the pistillate flowering in hickory (Carya cathayensis Sarg.)}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {691}
}
@article{Lassmann:2009fe,
author = {Lassmann, T and Hayashizaki, Y and Daub, C O},
title = {{TagDust--a program to eliminate artifacts from next generation sequencing data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {21},
pages = {2839--2840},
month = oct
}
@article{Anonymous:CA_NvPW0,
title = {{Terrestrial adaptations in the Anomura (Crustacea: Decapoda): Memoirs of Museum Victoria. 60(1): 13-26 (2003). 14p.}},
year = {2003},
pages = {1--14},
month = jan
}
@article{VeloAnton:2013ee,
author = {Velo-Ant{\'o}n, G and Velo-Ant{\'o}n, G and Parra, J L and Parra, J L and Parra-Olea, G and Parra-Olea, G and Zamudio, K R and Zamudio, K R},
title = {{Tracking climate change in a dispersal-limited species: reduced spatial and genetic connectivity in a montane salamander}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = may
}
@article{Tadros:2009gb,
author = {Tadros, W and Lipshitz, H D},
title = {{The maternal-to-zygotic transition: a play in two acts.}},
journal = {Development},
year = {2009},
volume = {136},
number = {18},
pages = {3033--3042},
month = sep
}
@article{Thurman:2013fe,
author = {Thurman, Robert E and Thurman, Robert E and Rynes, Eric and Rynes, Eric and Humbert, Richard and Humbert, Richard and Vierstra, Jeff and Vierstra, Jeff and Maurano, Matthew T and Maurano, Matthew T and Haugen, Eric and Haugen, Eric and Sheffield, Nathan C. and Stergachis, andrew B and Stergachis, andrew B and Wang, Hao and Wang, Hao and Vernot, Benjamin and Vernot, Benjamin and Garg, Kavita and Garg, Kavita and John, Sam and John, Sam and Sandstrom, Richard and Sandstrom, Richard and Bates, Daniel and Bates, Daniel and Boatman, Lisa and Boatman, Lisa and Canfield, Theresa K and Canfield, Theresa K and Diegel, Morgan and Diegel, Morgan and Dunn, Douglas and Dunn, Douglas and Ebersol, Abigail K and Ebersol, Abigail K and Frum, Tristan and Frum, Tristan and Giste, Erika and Giste, Erika and Johnson, Audra K and Johnson, Audra K and Johnson, Ericka M and Johnson, Ericka M and Kutyavin, Tanya and Kutyavin, Tanya and Lajoie, Bryan and Lajoie, Bryan and Lee, Bum-Kyu and Lee, Kristen and Lee, Kristen and London, Darin and Lotakis, Dimitra and Lotakis, Dimitra and Neph, Shane and Neph, Shane and Neri, Fidencio and Neri, Fidencio and Nguyen, Eric D and Nguyen, Eric D and Qu, Hongzhu and Qu, Hongzhu and Reynolds, Alex P and Reynolds, Alex P and Roach, Vaughn and Roach, Vaughn and Safi, Alexias and Safi, Alexias and Sanchez, Minerva E and Sanchez, Minerva E and Sanyal, Amartya and Sanyal, Amartya and Shafer, Anthony and Shafer, Anthony and Simon, Jeremy M. and Song, Lingyun and Vong, Shinny and Vong, Shinny and Weaver, Molly and Weaver, Molly and Yan, Yongqi and Yan, Yongqi and Zhang, Zhancheng and Zhang, Zhuzhu and Lenhard, Boris and Lenhard, Boris and Tewari, Muneesh and Tewari, Muneesh and Dorschner, Michael O and Dorschner, Michael O and Hansen, R Scott and Hansen, R Scott and Navas, Patrick A and Navas, Patrick A and Stamatoyannopoulos, George and Stamatoyannopoulos, George and Iyer, Vishwanath R. and Lieb, Jason D. and Sunyaev, Shamil R and Sunyaev, Shamil R and Akey, Joshua M and Akey, Joshua M and Sabo, Peter J and Sabo, Peter J and Kaul, Rajinder and Kaul, Rajinder and Furey, Terrence S. and Dekker, Job and Dekker, Job and Crawford, Gregory E. and Stamatoyannopoulos, John A and Stamatoyannopoulos, John A},
title = {{The accessible chromatin landscape of the human genome}},
journal = {Nature},
year = {2013},
volume = {488},
number = {7414},
pages = {75--82},
month = apr
}
@article{Lynch:2010fc,
author = {Lynch, M},
title = {{Scaling expectations for the time to establishment of complex adaptations}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {38},
pages = {16577--16582},
month = sep
}
@article{Anon:2010gv,
title = {{Do scientists really need a PhD?}},
journal = {Nature},
year = {2010},
volume = {464},
number = {7285},
pages = {7--7},
month = mar
}
@article{Traglia:2009df,
author = {Traglia, Michela and Sala, Cinzia and Masciullo, Corrado and Cverhova, Valeria and Lori, Francesca and Pistis, Giorgio and Bione, Silvia and Gasparini, Paolo and Ulivi, Sheila and Ciullo, Marina and Nutile, Teresa and Bosi, Emanuele and Sirtori, Marcella and Mignogna, Giovanna and Rubinacci, Alessandro and Buetti, Iwan and Camaschella, Clara and Petretto, Enrico and Toniolo, Daniela},
title = {{Heritability and Demographic Analyses in the Large Isolated Population of Val Borbera Suggest Advantages in Mapping Complex Traits Genes}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7554},
month = oct
}
@article{Lucas:1996tz,
author = {Lucas, JR and CREEL, SR and WASER, PM},
title = {{How to measure inclusive fitness, revisited}},
journal = {Animal Behaviour},
year = {1996},
volume = {51},
pages = {225--228}
}
@article{Mack:2006cn,
author = {Mack, P D},
title = {{Mating-responsive genes in reproductive tissues of female \textit{Drosophila} \textit{melanogaster}}},
journal = {Proceedings of the National Academy of Sciences},
year = {2006},
volume = {103},
number = {27},
pages = {10358--10363},
month = jul
}
@article{anders:2012es,
author = {anders, S and Reyes, A and Huber, W},
title = {{Detecting differential usage of exons from RNA-seq data}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {10},
pages = {2008--2017},
month = oct
}
@article{Gregory:2003ur,
author = {Gregory, T Ryan and Hebert, Paul DN},
title = {{Genome size variation in lepidopteran insects}},
journal = {Canadian journal of zoology},
year = {2003},
volume = {81},
number = {8},
pages = {1399--1405}
}
@article{ChavezGalarza:2013jr,
author = {Ch{\'a}vez-Galarza, Julio and Henriques, Dora and Johnston, J Spencer and Azevedo, Jo{\~a}o C and Patton, John C and Mu{\~n}oz, Irene and de La R{\'u}a, Pilar and Pinto, M Alice},
title = {{Signatures of selection in the Iberian honey bee ( Apis mellifera iberiensis) revealed by a genome scan analysis of single nucleotide polymorphisms (SNPs)}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = sep
}
@article{Qanbari:2014ei,
author = {Qanbari, Saber and Pausch, Hubert and Jansen, Sandra and Somel, Mehmet and Strom, Tim M and Fries, Ruedi and Nielsen, Rasmus and Simianer, Henner},
title = {{Classic Selective Sweeps Revealed by Massive Sequencing in Cattle}},
journal = {PLOS Genetics},
year = {2014},
volume = {10},
number = {2},
pages = {e1004148},
month = feb
}
@article{Gravlee:2009gd,
author = {Gravlee, Clarence C and Non, Amy L and Mulligan, Connie J},
title = {{Genetic Ancestry, Social Classification, and Racial Inequalities in Blood Pressure in Southeastern Puerto Rico}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e6821},
month = sep
}
@article{Gribbin:2009um,
author = {Gribbin and Simon},
title = {{Can evolution explain how minds work?}},
year = {2009},
pages = {1--2},
month = apr
}
@article{Robertson:2001tg,
author = {Robertson, BC and Degnan, SM and Kikkawa, J and Moritz, CC},
title = {{Genetic monogamy in the absence of paternity guards: the Capricorn silvereye, Zosterops lateralis chlorocephalus, on Heron Island}},
journal = {Behavioral Ecology},
year = {2001},
volume = {12},
number = {6},
pages = {666--673}
}
@article{CluttonBrock:1984wc,
author = {Clutton-Brock, TH and ALBON, SD and ALBON, SD and GUINNESS, FE and GUINNESS, FE},
title = {{MATERNAL DOMINANCE, BREEDING SUCCESS AND BIRTH SEX-RATIOS IN RED DEER}},
journal = {Nature},
year = {1984},
volume = {308},
number = {5957},
pages = {358--360}
}
@article{Papanicolaou:2009eh,
author = {Papanicolaou, Alexie and Stierli, Remo and Ffrench-Constant, Richard H and Heckel, David G},
title = {{Next generation transcriptomes for next generation genomes using est2assembly}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {447}
}
@article{Rottingen:2002tu,
author = {Rottingen, JA and Garnett, GP},
title = {{The epidemiological and control implications of HIV transmission probabilities within partnerships}},
journal = {Sexually Transmitted Diseases},
year = {2002},
volume = {29},
number = {12},
pages = {818--827}
}
@article{Luogen:2009hi,
author = {Luogen, C and Luogen, C and Jianing, X and Jianing, X and Jing, X and Jing, X and Ying, W and Ying, W and Zhongying, L and Zhongying, L},
title = {{Downregulation of ubiquitin gene expression in the deltamethrin-resistant diamondback moth ( \textit{Plutella} \textit{xylostella}L.)}},
journal = {Journal of Applied Entomology},
year = {2009},
volume = {133},
number = {7},
pages = {533--538},
month = aug
}
@article{Halley:2004ds,
author = {Halley, J D and Burd, M},
title = {{Nonequilibrium dynamics of social groups: insights from foraging Argentine ants}},
journal = {Insectes Sociaux},
year = {2004},
volume = {51},
number = {3},
month = aug
}
@article{SCHWAIGER:1993wt,
author = {SCHWAIGER, FW and BUITKAMP, J and WEYERS, E and Epplen, JT},
title = {{TYPING OF ARTIODACTYL MHC-DRB GENES WITH THE HELP OF INTRONIC SIMPLE REPEATED DNA-SEQUENCES}},
journal = {Molecular Ecology},
year = {1993},
volume = {2},
number = {1},
pages = {55--59}
}
@article{Schloss:2009do,
author = {Schloss, P D and Westcott, S L and Ryabin, T and Hall, J R and Hartmann, M and Hollister, E B and Lesniewski, R A and Oakley, B B and Parks, D H and Robinson, C J and Sahl, J W and Stres, B and Thallinger, G G and Van Horn, D J and Weber, C F},
title = {{Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities}},
journal = {Applied and Environmental Microbiology},
year = {2009},
volume = {75},
number = {23},
pages = {7537--7541},
month = nov
}
@article{Bryant:2012ep,
author = {Bryant, D and Bryant, D and Bouckaert, R and Bouckaert, R and FELSENSTEIN, J and FELSENSTEIN, J and Rosenberg, N A and Rosenberg, N A and RoyChoudhury, A and RoyChoudhury, A},
title = {{Inferring Species Trees Directly from Biallelic Genetic Markers: Bypassing Gene Trees in a Full Coalescent Analysis}},
journal = {Molecular Biology and Evolution},
year = {2012},
volume = {29},
number = {8},
pages = {1917--1932},
month = jul
}
@article{West:2007fp,
journal = {Journal of Evolutionary Biology},
year = {2008},
volume = {0},
number = {0},
month = feb
}
@article{Lu:2008bw,
author = {Lu, W and Abdel-Razik, A E S and Ashton, N and Balment, R J},
title = {{Urotensin II: Lessons from comparative studies for general endocrinology}},
journal = {General and Comparative Endocrinology},
year = {2008},
volume = {157},
number = {1},
pages = {14--20},
month = may
}
@book{Darwin:1871vh,
author = {Darwin, C},
title = {{The Descent of Man, and Selection in Relation to Sex}},
publisher = {J. Murray},
year = {1871},
address = {London},
edition = {1st}
}
@article{Maccallum:2009du,
author = {Maccallum, Iain and Przybylski, Dariusz and Gnerre, Sante and Burton, Joshua and Shlyakhter, Ilya and Gnirke, andreas and Malek, Joel and McKernan, Kevin and Ranade, Swati and Shea, Terrance P and Williams, Louise and Young, Sarah and Nusbaum, Chad and Jaffe, David B},
title = {{ALLPATHS 2: small genomes assembled accurately and with high continuity from short paired reads}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {10},
pages = {R103}
}
@article{Degner:2009gu,
author = {Degner, J F and Marioni, J C and Pai, A A and Pickrell, J K and Nkadori, E and Gilad, Y and Pritchard, J K},
title = {{Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {24},
pages = {3207--3212},
month = dec
}
@article{Zhang:2003wk,
author = {Zhang, SM and Zhang, SM and Wang, DQ and Wang, DQ and Zhang, YP and Zhang, YP},
title = {{Mitochondrial DNA variation, effective female population size and population history of the endangered Chinese sturgeon, Acipenser sinensis}},
journal = {Conservation Genetics},
year = {2003},
volume = {4},
number = {6},
pages = {673--683}
}
@article{Calisi:2008do,
author = {Calisi, R M and Malone, J H and Hews, D K},
title = {{Female secondary coloration in the Mexican boulder spiny lizard is associated with nematode load}},
journal = {Journal of Zoology},
year = {2008},
volume = {276},
number = {4},
pages = {358--367},
month = dec
}
@article{Webberley:2002kl,
author = {Webberley, K Mary and Hurst, Gregory D D and Buszko, Jaros{\l}aw and Majerus, Michael E N},
title = {{Lack of parasite-mediated sexual selection in a ladybird/sexually transmitted disease system}},
journal = {Animal Behaviour},
year = {2002},
volume = {63},
number = {1},
pages = {131--141},
month = jan
}
@article{Leinonen:2011cc,
author = {Leinonen, T and Cano, J M and Meril{\"a}, J},
title = {{Genetic basis of sexual dimorphism in the threespine stickleback Gasterosteus aculeatus}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {2},
pages = {218--227},
month = aug
}
@article{Rivas:2005ga,
author = {Rivas, Jes{\'u}s A and Burghardt, Gordon M},
title = {{Snake Mating Systems, Behavior, and Evolution: The Revisionary Implications of Recent Findings.}},
journal = {Journal of Comparative Psychology},
year = {2005},
volume = {119},
number = {4},
pages = {447--454},
annote = {Notes
they state that promiscuity implies a lack of discrimination/ pg 450, 2nd col. }
}
@inproceedings{Ghalambor:2003tu,
author = {Ghalambor, CK and Ghalambor, CK and Walker, JA and Walker, JA and Reznick, DN},
title = {{Multi-trait selection, adaptation, and constraints on the evolution of burst swimming performance}},
booktitle = {Integrative and Comparative Biology},
year = {2003},
pages = {431--438},
organization = {Univ Calif Riverside, Dept Biol, Riverside, CA 92521 USA}
}
@article{Brucker:2012gj,
author = {Brucker, Robert M and Brucker, Robert M and Funkhouser, Lisa J and Funkhouser, Lisa J and Setia, Shefali and Setia, Shefali and Pauly, Rini and Pauly, Rini and Bordenstein, Seth R and Bordenstein, Seth R},
title = {{Insect Innate Immunity Database (IIID): An Annotation Tool for Identifying Immune Genes in Insect Genomes}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {9},
pages = {e45125},
month = sep
}
@article{Bradley:2000vr,
author = {Bradley, RD and Tiemann-Boege, I and Kilpatrick, CW and Schmidly, DJ},
title = {{Taxonomic status of \textit{Peromyscus} boylii sacarensis: Inferences from DNA sequences of the mitochondrial cytochrome-B gene}},
journal = {Journal of Mammalogy},
year = {2000},
volume = {81},
number = {3},
pages = {875--884}
}
@article{Koyanagi:2008kp,
author = {Koyanagi, Mitsumasa and Nagata, Takashi and Katoh, Kazutaka and Katoh, Kazutaka and Yamashita, Shigeki and Yamashita, Shigeki and Tokunaga, Fumio and Tokunaga, Fumio},
title = {{Molecular Evolution of Arthropod Color Vision Deduced from Multiple Opsin Genes of Jumping Spiders}},
journal = {Journal of Molecular Evolution},
year = {2008},
volume = {66},
number = {2},
pages = {130--137},
month = jan
}
@article{GOTTSCHALK:1963wf,
author = {Gottschalk, Carl W and Pehling, G and Ullrick, K J and Lassiter, W E and Schmidt-Nielsen, B and O'Dell, Roberta and Mylle, M},
title = {{Micropuncture Study of Composition of Loop of Henle Fluid in Desert Rodents}},
journal = {American Journal of Physiology},
year = {1963},
volume = {204},
number = {4},
pages = {532--535}
}
@article{Rousseau:2009dq,
author = {Rousseau, C and Gonnet, M and Le Romancer, M and Nicolas, J},
title = {{CRISPI: a CRISPR interactive database}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {24},
pages = {3317--3318},
month = dec
}
@article{CRIST:1995uz,
author = {CRIST, TO and WIENS, JA},
title = {{Individual-Movements and Estimation of Population-Size in Darkling Beetles (Coleoptera, Tenebrionidae)}},
journal = {Journal of Animal Ecology},
year = {1995},
volume = {64},
number = {6},
pages = {733--746}
}
@article{Tao:2013hv,
author = {Tao, T and Zhao, L and Lv, Y and Chen, J and Hu, Y and Zhang, T and Zhou, B},
title = {{Transcriptome Sequencing and Differential Gene Expression Analysis of Delayed Gland Morphogenesis in \textit{Gossypium australe} during Seed Germination}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {9},
pages = {e75323}
}
@article{Kikkawa:2009de,
author = {Kikkawa, Eri F and Tsuda, Tomi T and Sumiyama, Daisuke and Naruse, Taeko K and Fukuda, Michio and Kurita, Masanori and Wilson, Rory P and LeMaho, Yvon and Miller, Gary D and Tsuda, Michio and Murata, Koichi and Kulski, Jerzy K and Inoko, Hidetoshi},
title = {{Trans-species polymorphism of the Mhc class II DRB-like gene in banded penguins (genus Spheniscus)}},
journal = {Immunogenetics},
year = {2009},
volume = {61},
number = {5},
pages = {341--352},
month = mar
}
@article{Schielzeth:2011bp,
author = {Schielzeth, H and Bolund, E and Kempenaers, B and Forstmeier, W},
title = {{Quantitative genetics and fitness consequences of neophilia in zebra finches}},
journal = {Behavioral Ecology},
year = {2011},
volume = {22},
number = {1},
pages = {126--134},
month = mar
}
@article{Paris:2008du,
author = {Paris, Mathilde and Pettersson, Katarina and Schubert, Michael and Bertrand, Stephanie and Pongratz, Ingemar and Escriva, Hector and Laudet, Vincent},
title = {{An amphioxus orthologue of the estrogen receptor that does not bind estradiol: Insights into estrogen receptor evolution}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {219}
}
@article{Lukacs:2010bj,
author = {Lukacs, Morten F and Harstad, Havard and Bakke, Hege G and Beetz-Sargent, Marianne and McKinnel, Linda and Lubieniecki, Krzysztof P and Koop, Ben F and Grimholt, Unni},
title = {{Comprehensive analysis of MHC class I genes from the U-, S-, and Z-lineages in Atlantic salmon}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {154}
}
@article{Wakeley:2009jd,
author = {Wakeley, J and Sargsyan, O},
title = {{Extensions of the Coalescent Effective Population Size}},
journal = {Genetics},
year = {2008},
volume = {181},
number = {1},
pages = {341--345},
month = nov
}
@booklet{Dobzhansky:1937wg,
title = {{Genetics and the Origin of Species}},
author = {Dobzhansky, TG},
howpublished = {Columbia University Press},
year = {1937}
}
@article{Pike:2010fd,
author = {Pike, T W},
title = {{Collaboration networks and scientific impact among behavioral ecologists}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {2},
pages = {431--435},
month = feb
}
@incollection{Fitzgerald:1993ui,
author = {Fitzgerald, T D},
title = {{Sociality in caterpillars}},
booktitle = {Caterpillars: Ecological and Evolutionary Constraints on Foraging},
year = {1993},
pages = {372--403},
publisher = {Chapman and Hall},
address = {New York}
}
@article{Richman:2002vh,
author = {Richman, AD and Herrera, LG and Nash, D},
title = {{Characterization of \textit{Peromyscus} MHC class II beta sequences by ligation-anchored RT PCR and denaturing gradient gel electrophoresis}},
journal = {European Journal of Immunogenetics},
year = {2002},
volume = {29},
number = {3},
pages = {213--217}
}
@article{Smukowski:2011cv,
author = {Smukowski, C S and Noor, M A F},
title = {{Recombination rate variation in closely related species}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {6},
pages = {496--508},
month = jun
}
@article{Jin:2007bo,
author = {Jin, L and Tao, L and Pavlova, S I and So, J-S and Kiwanuka, N and Namukwaya, Z and Saberbein, B A and Wawer, M},
title = {{Species diversity and relative abundance of vaginal lactic acid bacteria from women in Uganda and Korea}},
journal = {Journal of Applied Microbiology},
year = {2006},
volume = {0},
number = {0},
pages = {061120055200078--???},
month = nov
}
@article{Dufour:2002dx,
author = {Dufour, DL and Sauther, ML},
title = {{Comparative and evolutionary dimensions of the energetics of human pregnancy and lactation}},
journal = {American journal of human biology : the official journal of the Human Biology Council},
year = {2002},
volume = {14},
number = {5},
pages = {584--602},
month = aug
}
@article{Huck:2005cd,
author = {Polk, John D},
title = {{Paternity and kinship patterns in polyandrous moustached tamarins (Saguinus mystax)}},
journal = {American Journal of Physical Anthropology},
year = {2005},
volume = {127},
number = {4},
pages = {449--464},
month = aug
}
@article{Wagner:1996vz,
author = {Wagner, RH and Schug, MD and Morton, ES},
title = {{Condition dependent control of paternity by female purple martins: Implications for coloniality}},
journal = {Behavioral Ecology and Sociobiology},
year = {1996},
volume = {38},
number = {6},
pages = {379--389}
}
@article{Haasl:2010kr,
author = {Haasl, R J and Payseur, B A},
title = {{The Number of Alleles at a Microsatellite Defines the Allele Frequency Spectrum and Facilitates Fast Accurate Estimation of ~}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {12},
pages = {2702--2715},
month = nov
}
@article{Fisher:2006ch,
author = {Fisher, D O and Double, M C and Moore, B D},
title = {{Number of mates and timing of mating affect offspring growth in the small marsupial Antechinus agilis}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
number = {2},
pages = {289--297},
month = feb
}
@article{Chuang:2014it,
author = {Chuang, T J and Chen, F C},
title = {{DNA Methylation is Associated with an Increased Level of Conservation at Nondegenerate Nucleotides in Mammals}},
journal = {Molecular Biology and Evolution},
year = {2014},
volume = {31},
number = {2},
pages = {387--396},
month = jan
}
@article{Lahdenpera:2011es,
author = {Lahdenpera, Mirkka and Russell, andrew F and Tremblay, Marc and Lummaa, Virpi},
title = {{SELECTION ON MENOPAUSE IN TWO PREMODERN HUMAN POPULATIONS: NO EVIDENCE FOR THE MOTHER HYPOTHESIS}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {2},
pages = {476--489},
month = nov
}
@article{Summers:2009ey,
author = {Summers, Kyle and Roney, Kelly E. and Roney, Kelly E. and da Silva, Jack and da Silva, Jack and Capraro, Gerald and Capraro, Gerald and Cuthbertson, Brandon J. and Cuthbertson, Brandon J. and Kazianis, Steven and Kazianis, Steven and Rosenthal, Gil G. and Rosenthal, Gil G. and Ryan, Michael J. and Ryan, Michael J. and McConnell, Thomas J. and McConnell, Thomas J.},
title = {{Divergent patterns of selection on the DAB and DXB MHC class II loci in Xiphophorus fishes}},
journal = {Genetica},
year = {2009},
volume = {135},
number = {3},
pages = {379--390}
}
@article{Wang:2003ta,
author = {Wang, JL and Whitlock, MC and Whitlock, MC},
title = {{Estimating effective population size and migration rates from genetic samples over space and time}},
journal = {Genetics},
year = {2003},
volume = {163},
number = {1},
pages = {429--446}
}
@article{Prabhu:2009hr,
author = {Prabhu, S and Pe'er, I},
title = {{Overlapping pools for high-throughput targeted resequencing}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {7},
pages = {1254--1261},
month = jul
}
@article{Wlasiuk:2010fz,
author = {Wlasiuk, Gabriela and Nachman, Michael W},
title = {{PROMISCUITY AND THE RATE OF MOLECULAR EVOLUTION AT PRIMATE IMMUNITY GENES}},
journal = {Evolution},
year = {2010},
month = apr
}
@article{Widemo:1997uq,
author = {Widemo, F},
title = {{The social implications of traditional use of lek sites in the ruff Philomachus pugnax}},
journal = {Behavioral Ecology},
year = {1997},
volume = {8},
number = {2},
pages = {211--217}
}
@article{Wegner:2009ks,
author = {Wegner, K Mathias},
title = {{Massive parallel MHC genotyping: titanium that shines}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {9},
pages = {1818--1820},
month = may
}
@article{Dudley:2009kl,
author = {Dudley, Joel T and Butte, Atul J},
title = {{A Quick Guide for Developing Effective Bioinformatics Programming Skills}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {12},
pages = {e1000589},
month = dec
}
@article{Wilson:2006ja,
author = {Wilson, K L and Wilson, K L and Fitch, K R and Fitch, K R and Bafus, B T and Bafus, B T and Wakimoto, B T},
title = {{Sperm plasma membrane breakdown during \textit{Drosophila} fertilization requires Sneaky, an acrosomal membrane protein}},
journal = {Development},
year = {2006},
volume = {133},
number = {24},
pages = {4871--4879},
month = nov
}
@article{Marcais:2011dk,
author = {Mar{\c c}ais, Guillaume and Kingsford, Carl},
title = {{A fast, lock-free approach for efficient parallel counting of occurrences of k-mers.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {6},
pages = {764--770},
month = mar
}
@article{Watts:2009tn,
author = {Watts, K and Watts, K and Holekamp, K and Holekamp, K},
title = {{ECOLOGICAL DETERMINANTS OF SURVIVAL AND
REPRODUCTION IN THE SPOTTED HYENA}},
journal = {Journal of Mammalogy},
year = {2009},
pages = {1--11},
month = mar
}
@article{Albrecht:2006gs,
author = {Albrecht, T and Schnitzer, J and Kreisinger, J and Exnerova, A and Bryja, J and Munclinger, P},
title = {{Extrapair paternity and the opportunity for sexual selection in long-distant migratory passerines}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {2},
pages = {477--486},
month = feb
}
@article{Kokko:1999ge,
author = {Kokko, Hanna and Mackenzie, Aulay and Mackenzie, Aulay and Reynolds, John D and Reynolds, John D and Lindstr{\"o}m, Jan and Lindstr{\"o}m, Jan and Sutherland, William J and Sutherland, William J},
title = {{Measures of Inequality Are Not Equal}},
journal = {The American Naturalist},
year = {1999},
volume = {154},
number = {3},
pages = {358--382},
month = sep
}
@article{Cirulli:2007ky,
author = {Cirulli, Elizabeth T and Kliman, Richard M and Noor, Mohamed A F},
title = {{Fine-Scale Crossover Rate Heterogeneity in \textit{Drosophila} \textit{pseudoobscura}}},
journal = {Journal of Molecular Evolution},
year = {2006},
volume = {64},
number = {1},
pages = {129--135},
month = dec
}
@article{Johnson:2007fh,
author = {Johnson, D S and Mortazavi, A and Myers, R M and Wold, B},
title = {{Genome-Wide Mapping of in Vivo Protein-DNA Interactions}},
journal = {Science (New York, NY)},
year = {2007},
volume = {316},
number = {5830},
pages = {1497--1502},
month = jun
}
@article{Hill:1968fc,
author = {Hill, W G and Robertson, Alan},
title = {{Linkage disequilibrium in finite populations}},
journal = {Theoretical and Applied Genetics},
year = {1968},
volume = {38},
number = {6},
pages = {226--231},
month = jun
}
@article{Leadbeater:2010jx,
author = {Leadbeater, Ellouise and Carruthers, Jonathan M and Green, Jonathan P and van Heusden, Jasper and Field, Jeremy},
title = {{Unrelated Helpers in a Primitively Eusocial Wasp: Is Helping Tailored Towards Direct Fitness?}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {8},
pages = {e11997},
month = aug
}
@article{Strassmann:2010bq,
author = {Strassmann, Joan E and Queller, David C},
title = {{THE SOCIAL ORGANISM: CONGRESSES, PARTIES, AND COMMITTEES}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {3},
pages = {605--616},
month = mar
}
@article{Anonymous:2012hj,
title = {{Oldest known dinosaurian nesting site and reproductive biology of the Early Jurassic sauropodomorph Massospondylus}},
year = {2012},
pages = {1--7},
month = jan
}
@article{Mortazavi:2008jj,
author = {Mortazavi, Ali and Williams, Brian A and Mccue, Kenneth and Schaeffer, Lorian and Wold, Barbara},
title = {{Mapping and quantifying mammalian transcriptomes by RNA-Seq}},
journal = {Nature Methods},
year = {2008},
volume = {5},
number = {7},
pages = {621--628},
month = may
}
@article{sflorenda:2012tf,
author = {{sflorenda}},
title = {{Ultra-high resolution HLA genotyping and allele discovery by highly multiplexed cDNA amplicon pyrosequencing}},
year = {2012},
pages = {1--26},
month = aug
}
@article{Tollenaere:2012ju,
author = {Tollenaere, Charlotte and Tollenaere, Charlotte and Ivanova, Svilena and Ivanova, Svilena and Duplantier, Jean-Marc and Loiseau, Anne and Rahalison, Lila and Rahalison, Lila and Rahelinirina, Soanandrasana and Rahelinirina, Soanandrasana and Brouat, Carine and Brouat, Carine},
title = {{Contrasted patterns of selection on MHC-linked microsatellites in natural populations of the Malagasy plague reservoir.}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {3},
pages = {e32814}
}
@article{Lacey:1998wn,
author = {Lacey, EA and Braude, SH and Braude, SH and Wieczorek, JR},
title = {{Solitary burrow use by adult Patagonian tuco-tucos (\emph{\textit{Ctenomys} haigi})}},
journal = {Journal of Mammalogy},
year = {1998},
volume = {79},
number = {3},
pages = {986--991}
}
@article{Whittingham:1992wj,
author = {Whittingham, LA and Taylor, PD and Robertson, RJ},
title = {{CONFIDENCE OF PATERNITY AND MALE PARENTAL CARE}},
journal = {The American Naturalist},
year = {1992},
volume = {139},
number = {5},
pages = {1115--1125}
}
@article{Orr:2009kh,
author = {Orr, H Allen},
title = {{Fitness and its role in evolutionary genetics}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {8},
pages = {531--539},
month = aug
}
@article{MORRIS:2011gu,
author = {MORRIS, GEOFFREY P and MORRIS, GEOFFREY P and GRABOWSKI, PAUL P and GRABOWSKI, PAUL P and Borevitz, Justin O and Borevitz, Justin O},
title = {{Genomic diversity in switchgrass (Panicum virgatum): from the continental scale to a dune landscape}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {23},
pages = {4938--4952},
month = nov
}
@article{Segurel:2012gd,
author = {S{\'e}gurel, Laure and S{\'e}gurel, Laure and Thompson, Emma E and Thompson, Emma E and Flutre, Timoth{\'e}e and Flutre, Timoth{\'e}e and Lovstad, Jessica and Lovstad, Jessica and Venkat, Aarti and Margulis, Susan W and Margulis, Susan W and Moyse, Jill and Moyse, Jill and Ross, Steve and Ross, Steve and Gamble, Kathryn and Gamble, Kathryn and Sella, Guy and Sella, Guy and Ober, Carole and Ober, Carole and Przeworski, Molly},
title = {{The ABO blood group is a trans-species polymorphism in primates.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = oct
}
@article{Ptak:2003wl,
author = {Ptak, SE and Ptak, SE and Lachmann, M and Lachmann, M},
title = {{On the evolution of polygyny: a theoretical examination of the polygyny threshold model}},
journal = {Behavioral Ecology},
year = {2003},
volume = {14},
number = {2},
pages = {201--211}
}
@booklet{Lack:1968wm,
title = {{Ecological Adaptations for Breeding in Birds}},
author = {Lack, DL},
howpublished = {Distributed in the U.S.A. by Barnes {\&} Noble, London},
year = {1968}
}
@article{Crew:1990ws,
author = {Crew, MD and FILIPOWSKY, ME and ZELLER, EC and Smith, GS and WALFORD, RL},
title = {{MAJOR HISTOCOMPATIBILITY COMPLEX CLASS-I GENES OF PEROMYSCUS-LEUCOPUS}},
journal = {Immunogenetics},
year = {1990},
volume = {32},
number = {6},
pages = {371--379}
}
@article{Hediger:2004is,
author = {Hediger, Matthias A and Romero, Michael F and Peng, Ji-Bin and Rolfs, andreas and Takanaga, Hitomi and Bruford, Elspeth A},
title = {{The ABCs of solute carriers: physiological, pathological and therapeutic implications of human membrane transport proteins}},
journal = {Pfl�gers Archiv European Journal of Physiology},
year = {2004},
volume = {447},
number = {5},
pages = {465--468},
month = feb
}
@article{Dobberfuhl:2005bv,
author = {Dobberfuhl, Adam P and Ullmann, Jeremy F P and Shumway, Caroly A},
title = {{Visual Acuity, Environmental Complexity, and Social Organization in African Cichlid Fishes.}},
journal = {Behavioral Neuroscience},
year = {2005},
volume = {119},
number = {6},
pages = {1648--1655}
}
@article{Langfelder:2008bd,
author = {Langfelder, Peter and Horvath, Steve},
title = {{WGCNA: an R package for weighted correlation network analysis}},
journal = {BMC Bioinformatics},
year = {2008},
volume = {9},
number = {1},
pages = {559}
}
@article{Schroder:2010jy,
author = {Schr{\"o}der, Jan and Bailey, James and Conway, Thomas and Zobel, Justin},
title = {{Reference-Free Validation of Short Read Data}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {9},
pages = {e12681},
month = sep
}
@article{Cock:2009hj,
author = {Cock, P J A and Antao, T and Chang, J T and Chapman, B A and Cox, C J and Dalke, A and Friedberg, I and Hamelryck, T and Kauff, F and Wilczynski, B and de Hoon, M J L},
title = {{Biopython: freely available Python tools for computational molecular biology and bioinformatics}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {11},
pages = {1422--1423},
month = may
}
@article{Keleman:2013gj,
author = {Keleman, Krystyna and Keleman, Krystyna and Vrontou, Eleftheria and Vrontou, Eleftheria and Kr{\"u}ttner, Sebastian and Kr{\"u}ttner, Sebastian and Yu, Jai Y and Yu, Jai Y and Kurtovic-Kozaric, Amina and Kurtovic-Kozaric, Amina and Dickson, Barry J and Dickson, Barry J},
title = {{Dopamine neurons modulate pheromone responses in \textit{Drosophila} courtship learning}},
journal = {Nature},
year = {2013},
volume = {488},
number = {7414},
pages = {145--149},
month = apr
}
@article{Hoebe:2004km,
author = {Hoebe, Kasper and Janssen, Edith and Beutler, Bruce},
title = {{The interface between innate and adaptive immunity}},
journal = {Nature Immunology},
year = {2004},
volume = {5},
number = {10},
pages = {971--974},
month = oct
}
@article{Westneat:1993ty,
author = {Westneat, DF},
title = {{Polygyny and Extrapair Fertilizations in Eastern Red-Winged Blackbirds (\emph{\textit{Agelaius phoeniceus}})}},
journal = {Behavioral Ecology},
year = {1993},
volume = {4},
number = {1},
pages = {49--60}
}
@article{Young:2010gm,
author = {Young, Kyle A and Genner, Martin J and Haesler, Marcel P and Joyce, Domino A},
title = {{SEQUENTIAL FEMALE ASSESSMENT DRIVES COMPLEX SEXUAL SELECTION ON BOWER SHAPE IN A CICHLID FISH}},
journal = {Evolution},
year = {2010},
month = apr
}
@article{Musolf:2004gs,
author = {Musolf, Kerstin and Meyer-Lucht, Yvonne and Sommer, Simone},
title = {{Evolution of MHC-DRB class II polymorphism in the genus Apodemus and a comparison of DRB sequences within the family Muridae (Mammalia: Rodentia)}},
journal = {Immunogenetics},
year = {2004},
volume = {56},
number = {6},
month = sep
}
@article{Rantala:2012dw,
author = {Rantala, M J and Rantala, M J and Coetzee, V and Coetzee, V and Moore, F R and Moore, F R and Skrinda, I and Skrinda, I and Kecko, S and Kecko, S and Krama, T and Krama, T and Kivleniece, I and Kivleniece, I and Krams, I and Krams, I},
title = {{Adiposity, compared with masculinity, serves as a more valid cue to immunocompetence in human mate choice}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1751},
pages = {20122495--20122495},
month = nov
}
@book{Fitzgerald:1995ur,
author = {Fitzgerald, T D},
title = {{The Tent Caterpillars}},
publisher = {Cornell University Press},
year = {1995}
}
@article{cfan:2011ts,
author = {{cfan}},
title = {{Illumina Adapter Sequence Letter }},
year = {2011},
pages = {1--15},
month = oct
}
@article{Elgot:2012hv,
author = {Elgot, Abdeljalil and El Hiba, Omar and Gamrani, Halima},
title = {{Neuroscience Letters}},
journal = {Neuroscience Letters},
year = {2012},
volume = {515},
number = {1},
pages = {55--60},
month = apr
}
@article{Wall:2005cu,
author = {Wall, D P},
title = {{Functional genomic analysis of the rates of protein evolution}},
journal = {Proceedings of the National Academy of Sciences},
year = {2005},
volume = {102},
number = {15},
pages = {5483--5488},
month = apr
}
@article{Jennions:1998tm,
author = {Jennions, MD},
title = {{The effect of leg band symmetry on female-male association in zebra finches}},
journal = {Animal Behaviour},
year = {1998},
volume = {55},
pages = {61--67}
}
@article{Araki:2005cl,
author = {Araki, Hitoshi and Blouin, Michael S},
title = {{Unbiased estimation of relative reproductive success of different groups: evaluation and correction of bias caused by parentage assignment errors}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {13},
pages = {4097--4109},
month = aug
}
@article{Brodsky:2010el,
author = {Brodsky, L and Kogan, S and BenJacob, E and Nevo, E},
title = {{A binary search approach to whole-genome data analysis}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {39},
pages = {16893--16898},
month = sep
}
@article{Shepherd:1999tc,
author = {Shepherd, UL and Kelt, DA},
title = {{Mammalian species richness and morphological complexity along an elevational gradient in the arid south-west}},
journal = {Journal of Biogeography},
year = {1999},
volume = {26},
number = {4},
pages = {843--855}
}
@article{Chan:2009bz,
author = {Chan, R and Stuart-Fox, D and Jessop, T S},
title = {{Why are females ornamented? A test of the courtship stimulation and courtship rejection hypotheses}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {6},
pages = {1334--1342},
month = nov
}
@article{Hagenblad:2009bt,
author = {Hagenblad, Jenny and Olsson, Maria and Parker, Heidi G and Ostrander, Elaine A and Ellegren, Hans},
title = {{Population genomics of the inbred Scandinavian wolf}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {7},
pages = {1341--1351},
month = apr
}
@article{Anonymous:4eqUeIzC,
title = {{Ecology 1998 Wahaj}},
year = {1999},
pages = {11},
month = oct
}
@article{Rieske:2005dy,
author = {Rieske, L K and Rieske, L K and Townsend, L H and Townsend, L H},
title = {{Orientation and Dispersal Patterns of the Eastern Tent Caterpillar, \textit{Malacosoma} \textit{americanum} F. (Lepidoptera: Lasiocampidae)}},
journal = {Journal of Insect Behavior},
year = {2005},
volume = {18},
number = {2},
pages = {193--207},
month = mar
}
@article{Li:2008fs,
author = {Li, Xiao-Yong and MacArthur, Stewart and Bourgon, Richard and Nix, David and Pollard, Daniel A and Iyer, Venky N and Hechmer, Aaron and Simirenko, Lisa and Stapleton, Mark and Hendriks, Cris L Luengo and Chu, Hou Cheng and Ogawa, Nobuo and Inwood, William and Sementchenko, Victor and Beaton, Amy and Weiszmann, Richard and Celniker, Susan E and Knowles, David W and Gingeras, Tom and Speed, Terence P and Eisen, Michael B and Biggin, Mark D},
title = {{Transcription Factors Bind Thousands of Active and Inactive Regions in the \textit{Drosophila} Blastoderm}},
journal = {PLOS Biology},
year = {2008},
volume = {6},
number = {2},
pages = {e27}
}
@article{VanBel:2013gz,
author = {Van Bel, Michiel and Proost, Sebastian and Van Neste, Christophe and Deforce, Dieter and Van de Peer, Yves and Vandepoele, Klaas},
title = {{TRAPID: an efficient online tool for the functional and comparative analysis of \textit{de novo} RNA-Seq transcriptomes}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {12},
pages = {R134}
}
@article{Solomon:2004it,
author = {Solomon, Nancy G and Keane, Brian and Knoch, Lana R and Hogan, Paula J},
title = {{Multiple paternity in socially monogamous prairie voles ( \textit{Microtus ochrogaster})}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2004},
volume = {82},
number = {10},
pages = {1667--1671},
month = oct
}
@article{Horner:2010fn,
author = {Horner, D S and Pavesi, G and Castrignano, T and De Meo, P D and Liuni, S and Sammeth, M and Picardi, E and Pesole, G},
title = {{Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing}},
journal = {Briefings In Bioinformatics},
year = {2010},
volume = {11},
number = {2},
pages = {181--197},
month = mar
}
@article{Bielawski:2004kf,
author = {Bielawski, Josephp and Yang, Ziheng},
title = {{A Maximum Likelihood Method for Detecting Functional Divergence at Individual Codon Sites, with Application to Gene Family Evolution}},
journal = {Journal of Molecular Evolution},
year = {2004},
volume = {59},
number = {1},
month = jul
}
@article{Sloan:2009kk,
author = {Sloan, Chantel D and andrew, Angeline D and Duell, Eric J and Williams, Scott M and Karagas, Margaret R and Moore, Jason H},
title = {{Genetic Population Structure Analysis in New Hampshire Reveals Eastern European Ancestry}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e6928},
month = sep
}
@article{Sun:2009gb,
author = {Sun, J X and Mullikin, J C and Patterson, N and Reich, D E},
title = {{Microsatellites Are Molecular Clocks That Support Accurate Inferences about History}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {5},
pages = {1017--1027},
month = apr
}
@article{Elgot:2009df,
author = {Elgot, Abdeljalil and Ahboucha, Samir and Bouyatas, My Mustapha and F{\`e}vre-Montange, Mich{\`e}lle and Gamrani, Halima},
title = {{Water deprivation affects serotoninergic system and glycoprotein secretion in the sub-commissural organ of a desert rodent Meriones shawi}},
journal = {Neuroscience Letters},
year = {2009},
volume = {466},
number = {1},
pages = {6--10},
month = nov
}
@article{Anonymous:CHNX5OxC,
title = {{Rstats Full Ref}},
year = {2011},
pages = {1--3447},
month = apr
}
@article{Chen:2010ic,
author = {Chen, H and Patterson, N and Reich, D},
title = {{Population differentiation as a test for selective sweeps}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {3},
pages = {393--402},
month = mar
}
@article{Lazarus:2002wg,
author = {Lazarus, R and Vercelli, D and Palmer, LJ and Klimecki, WJ and Silverman, EK and Richter, B and Riva, A and Ramoni, M and Martinez, FD and Weiss, ST and Kwiatkowski, DJ},
title = {{Single nucleotide polymorphisms in innate immunity genes: abundant variation and potential role in complex human disease}},
journal = {Immunological Reviews},
year = {2002},
volume = {190},
number = {1},
pages = {9--25}
}
@article{Gribble:2012gy,
author = {Gribble, Kristin E and Gribble, Kristin E and Mark Welch, David B and Mark Welch, David B},
title = {{The mate recognition protein gene mediates reproductive isolation and speciation in the Brachionus plicatilis cryptic species complex}},
journal = {BMC Evolutionary Biology},
year = {2012},
volume = {12},
number = {1},
pages = {134}
}
@article{Dugdale:2008eh,
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {7},
month = apr
}
@article{Buhler:2011kk,
author = {Buhler, Stephane and Sanchez-Mazas, Alicia},
title = {{HLA DNA Sequence Variation among Human Populations: Molecular Signatures of Demographic and Selective Events}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {2},
pages = {e14643},
month = feb
}
@article{Critelli:1998uq,
author = {Critelli, JW and Critelli, JW and Suire, DM and Suire, DM},
title = {{Obstacles to condom use: The combination of other forms of birth control and short-term monogamy}},
journal = {Journal of American College Health},
year = {1998},
volume = {46},
number = {5},
pages = {215--219}
}
@article{Bredy:2007dg,
author = {Bredy, Timothy W and Brown, Richard E and Meaney, Michael J},
title = {{Effect of resource availability on biparental care, and offspring neural and behavioral development in the California mouse (\textit{Peromyscus} \textit{californicus})}},
journal = {The European journal of neuroscience},
year = {2007},
volume = {25},
number = {2},
pages = {567--575},
month = jan
}
@article{Li:2010de,
author = {Li, J and Browning, S and Mahal, S P and Oelschlegel, A M and Weissmann, C},
title = {{Darwinian Evolution of Prions in Cell Culture}},
journal = {Science (New York, NY)},
year = {2010},
volume = {327},
number = {5967},
pages = {869--872},
month = feb
}
@article{Anonymous:60RJdhAG,
title = {{sperm characteristics}},
year = {2009},
pages = {1--8},
month = oct
}
@article{Anonymous:2013bb,
title = {{Mol Ecol 2013 Orsini}},
year = {2013},
pages = {1--49},
month = oct
}
@article{Evans:2008fn,
author = {Evans, Jonathan P and Simmons, Leigh W},
title = {{The genetic basis of traits regulating sperm competition and polyandry: can selection favour the evolution of good- and sexy-sperm?}},
journal = {Genetica},
year = {2007},
volume = {134},
number = {1},
pages = {5--19},
month = jul
}
@article{Turner:2008gw,
author = {Turner, Leslie M and Hoekstra, Hopi E},
title = {{Reproductive protein evolution within and between species: maintenance of divergent ZP3 alleles in \textit{Peromyscus}.}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {11},
pages = {2616--2628},
month = jun
}
@article{Li:2012fv,
author = {Li, Wen and Ehrich, Marion},
title = {{Transient alterations of the blood-brain barrier tight junction and receptor potential channel gene expression by chlorpyrifos}},
journal = {Journal of Applied Toxicology},
year = {2012},
volume = {33},
number = {10},
pages = {1187--1191},
month = may
}
@article{Thrall:2000tc,
author = {Thrall, PH and Antonovics, J and Dobson, AP and Dobson, AP},
title = {{Sexually transmitted diseases in polygynous mating systems: prevalence and impact on reproductive success}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1452},
pages = {1555--1563}
}
@article{Anonymous:2hbpQxzG,
title = {{Phylogeography of the Trans-Volcanic bunchgrass lizard (Sceloporus bicanthalis) across the highlands of south-eastern Mexico}},
year = {2013},
pages = {1--14},
month = sep
}
@article{Lebigre:2012gz,
author = {Lebigre, Christophe and Lebigre, Christophe and Arcese, Peter and Sardell, Rebecca J and Sardell, Rebecca J and Keller, Lukas F and Keller, Lukas F and Reid, Jane M and Reid, Jane M},
title = {{EXTRA-PAIR PATERNITY AND THE VARIANCE IN MALE FITNESS IN SONG SPARROWS (MELOSPIZA MELODIA)}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = apr
}
@article{Lewellen:1999tn,
author = {Lewellen, RH and Vessey, SH},
title = {{Estimating densities of \textit{Peromyscus} leucopus using live-trap and nestbox censuses}},
journal = {Journal of Mammalogy},
year = {1999},
volume = {80},
number = {2},
pages = {400--409}
}
@article{Anonymous:2012wy,
title = {{Does aggression and explorative behaviour decrease with lost warning coloration?}},
year = {2012},
pages = {1--11},
month = nov
}
@article{Hoogland:1983va,
author = {Hoogland, JL},
title = {{Black-Tailed Prairie Dog Coteries Are Cooperatively Breeding Units}},
journal = {The American Naturalist},
year = {1983},
volume = {121},
number = {2},
pages = {275--280}
}
@article{Anonymous:2000vz,
title = {{Water loss in desert ants: caste variation and the effect of cuticle abrasion}},
year = {2000},
pages = {1--6},
month = feb
}
@article{Lanfear:2014if,
author = {Lanfear, Robert and Kokko, Hanna and Eyre-Walker, Adam},
title = {{Population size and the rate of evolution}},
journal = {Trends In Ecology {\&} Evolution},
year = {2014},
volume = {29},
number = {1},
pages = {33--41},
month = jan
}
@article{Birkhead:2002fr,
author = {Birkhead, Timothy R and Pizzari, Tommaso},
title = {{EVOLUTION OF SEXPOSTCOPULATORY SEXUAL SELECTION}},
journal = {Nature Reviews Genetics},
year = {2002},
volume = {3},
number = {4},
pages = {262--273},
month = apr
}
@article{Linn:2007dl,
author = {Linn, Christopher D and Molina, Yamile and Difatta, Jamie and Christenson, Terry E},
title = {{The adaptive advantage of prolonged mating: a test of alternative hypotheses}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {3},
pages = {481--485},
month = sep
}
@article{Acuna:2012ic,
author = {Acuna, R and Acuna, R and Padilla, B E and Padilla, B E and Florez-Ramos, C P and Florez-Ramos, C P and Rubio, J D and Rubio, J D and Herrera, J C and Herrera, J C and Benavides, P and Benavides, P and Lee, S J and Lee, S J and Yeats, T H and Yeats, T H and Egan, A N and Egan, A N and Doyle, J J and Doyle, J J and Rose, J K C and Rose, J K C},
title = {{Adaptive horizontal transfer of a bacterial gene to an invasive insect pest of coffee}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = feb
}
@article{CluttonBrock:2009vc,
author = {Clutton-Brock, TH and McAuliffe, Katherine},
title = {{Female mate choice in mammals}},
journal = {The Quarterly review of biology},
year = {2009},
volume = {84},
number = {1},
pages = {3--27},
month = mar
}
@article{Froeschke:2005dr,
author = {Froeschke, G},
title = {{MHC Class II DRB Variability and Parasite Load in the Striped Mouse (Rhabdomys pumilio) in the Southern Kalahari}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {22},
number = {5},
pages = {1254--1259},
month = feb
}
@article{STACEY:1982ty,
author = {STACEY, PB},
title = {{FEMALE PROMISCUITY AND MALE REPRODUCTIVE SUCCESS IN SOCIAL BIRDS AND MAMMALS}},
journal = {The American Naturalist},
year = {1982},
volume = {120},
number = {1},
pages = {51--64}
}
@article{Spear:2010fp,
author = {Spear, G T and Spear, G T and Gilbert, D and Gilbert, D and Landay, A L and Landay, A L and Zariffard, R and Zariffard, R and French, A L and French, A L and Patel, P and Patel, P and Gillevet, P M and Gillevet, P M},
title = {{Pyrosequencing of the Genital Microbiotas of HIV-Seropositive and -Seronegative Women Reveals Lactobacillus iners as the Predominant Lactobacillus Species}},
journal = {Applied and Environmental Microbiology},
year = {2010},
volume = {77},
number = {1},
pages = {378--381},
month = dec
}
@article{Datta:2010dh,
author = {Datta, S and Prado, R and Rodriguez, A and Escalante, A A},
title = {{Characterizing molecular adaptation: a hierarchical approach to assess the selective influence of amino acid properties}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {22},
pages = {2818--2825},
month = nov
}
@article{Wit:2012ho,
author = {Wit, Pierre and Wit, Pierre and Pespeni, Melissa H and Pespeni, Melissa H and Ladner, Jason T and Ladner, Jason T and Barshis, Daniel J and Barshis, Daniel J and Seneca, Fran{\c c}ois and Seneca, Fran{\c c}ois and Jaris, Hannah and Jaris, Hannah and Therkildsen, Nina Overgaard and Therkildsen, Nina Overgaard and Morikawa, Megan and Morikawa, Megan and Palumbi, Stephen R},
title = {{The simple fool's guide to population genomics via RNA-Seq: an introduction to high-throughput sequencing data analysis}},
journal = {Molecular Ecology Resources},
year = {2012},
pages = {n/a--n/a},
month = aug
}
@article{Mcguire:2010kt,
author = {Mcguire, Amy L and Majumder, Mary A and Halpern, Scott D and Swindell, J S and Yaeger, Laura V and Gibbs, Richard A and Wheeler, Thomas M},
title = {{Taking DNA from the dead}},
journal = {Nature Reviews Genetics},
year = {2010},
volume = {11},
number = {5},
pages = {318--318},
month = mar
}
@article{Pearse:2009eo,
author = {Pearse, Devon E and anderson, Eric C},
title = {{Multiple paternity increases effective population size}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {15},
pages = {3124--3127},
month = aug
}
@article{Anonymous:cNaxuoaS,
author = {O'Neil, Shawn T and Emrich, Scott J},
title = {{Assessing De Novo transcriptome assembly metrics for consistency and utility.}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
pages = {465}
}
@article{Ferreira:2013by,
author = {Ferreira, Pedro G and Patalano, Solenn and Chauhan, Ritika and Ffrench-Constant, Richard and Gabaldon, Toni and Guigo, Roderic and Sumner, Seirian},
title = {{Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {2},
pages = {R20}
}
@article{Adler:2011ks,
author = {Adler, P B and Adler, P B and Seabloom, E W and Seabloom, E W and Borer, E T and Borer, E T and Hillebrand, H and Hillebrand, H and Hautier, Y and Hautier, Y and Hector, A and Hector, A and Harpole, W S and Harpole, W S and O'Halloran, L R and O'Halloran, L R and Grace, J B and Grace, J B and anderson, T M and anderson, T M and Bakker, J D and Bakker, J D and Biederman, L A and Biederman, L A and Brown, C S and Brown, C S and Buckley, Y M and Buckley, Y M and Calabrese, L B and Calabrese, L B and Chu, C J and Chu, C J and Cleland, E E and Cleland, E E and Collins, S L and Collins, S L and Cottingham, K L and Cottingham, K L and Crawley, M J and Crawley, M J and Damschen, E I and Damschen, E I and Davies, K F and Davies, K F and DeCrappeo, N M and DeCrappeo, N M and Fay, P A and Fay, P A and Firn, J and Firn, J and Frater, P and Frater, P and Gasarch, E I and Gasarch, E I and Gruner, D S and Gruner, D S and Hagenah, N and Hagenah, N and Hille Ris Lambers, J and Hille Ris Lambers, J and Humphries, H and Humphries, H and Jin, V L and Jin, V L and Kay, A D and Kay, A D and Kirkman, K P and Kirkman, K P and Klein, J A and Klein, J A and Knops, J M H and Knops, J M H and La Pierre, K J and La Pierre, K J and Lambrinos, J G and Lambrinos, J G and Li, W and Li, W and MacDougall, A S and MacDougall, A S and McCulley, R L and McCulley, R L and Melbourne, B A and Melbourne, B A and Mitchell, C E and Mitchell, C E and Moore, J L and Moore, J L and Morgan, J W and Morgan, J W and Mortensen, B and Mortensen, B and Orrock, J L and Orrock, J L and Prober, S M and Prober, S M and Pyke, D A and Pyke, D A and Risch, A C and Risch, A C and Schuetz, M and Schuetz, M and Smith, M D and Smith, M D and Stevens, C J and Stevens, C J and Sullivan, L L and Sullivan, L L and Wang, G and Wang, G and Wragg, P D and Wragg, P D and Wright, J P and Wright, J P and Yang, L H and Yang, L H},
title = {{Productivity Is a Poor Predictor of Plant Species Richness}},
journal = {Science (New York, NY)},
year = {2011},
volume = {333},
number = {6050},
pages = {1750--1753},
month = sep
}
@article{Christoffels:2014bg,
author = {Christoffels, Alan},
title = {{A glance at quality score: implication for \textit{de novo} transcriptome reconstruction of Illumina reads}},
year = {2014},
pages = {1--5},
month = feb
}
@article{Cardinal:2010ir,
author = {Cardinal, S and Straka, J and Danforth, B N},
title = {{Comprehensive phylogeny of apid bees reveals the evolutionary origins and antiquity of cleptoparasitism}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {37},
pages = {16207--16211},
month = sep
}
@article{Suen:2011kc,
author = {Suen, Garret and Teiling, Clotilde and Li, Lewyn and Holt, Carson and Abouheif, Ehab and Bornberg-Bauer, Erich and Bouffard, Pascal and Caldera, Eric J and Cash, Elizabeth and Cavanaugh, Amy and Denas, Olgert and Elhaik, Eran and Fave, Marie-Julie and Gadau, J{\"u}rgen and Gibson, Joshua D and Graur, Dan and Grubbs, Kirk J and Hagen, Darren E and Harkins, Timothy T and Helmkampf, Martin and Hu, Hao and Johnson, Brian R and Kim, Jay and Marsh, Sarah E and Moeller, Joseph A and Munoz-Torres, Monica C and Murphy, Marguerite C and Naughton, Meredith C and Nigam, Surabhi and Overson, Rick and Rajakumar, Rajendhran and Reese, Justin T and Scott, Jarrod J and Smith, Chris R and Tao, Shu and Tsutsui, Neil D and Viljakainen, Lumi and Wissler, Lothar and Yandell, Mark D and Zimmer, Fabian and Taylor, James and Slater, Steven C and Clifton, Sandra W and Warren, Wesley C and Elsik, Christine G and Smith, Christopher D and Weinstock, George M and Gerardo, Nicole M and Currie, Cameron R},
title = {{The Genome Sequence of the Leaf-Cutter Ant Atta cephalotes Reveals Insights into Its Obligate Symbiotic Lifestyle}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {2},
pages = {e1002007},
month = feb
}
@article{Huchard:2012iy,
author = {Huchard, E and Huchard, E and Canale, C I and Canale, C I and Le Gros, C and Le Gros, C and Perret, M and Perret, M and Henry, P Y and Henry, P Y and Kappeler, P M and Kappeler, P M},
title = {{Convenience polyandry or convenience polygyny? Costly sex under female control in a promiscuous primate}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1732},
pages = {1371--1379},
month = feb
}
@article{Brauch:2005hx,
author = {Brauch, K M},
title = {{Digital transcriptome analysis indicates adaptive mechanisms in the heart of a hibernating mammal}},
journal = {Physiological Genomics},
year = {2005},
volume = {23},
number = {2},
pages = {227--234},
month = oct
}
@article{ZELENINA:2005tv,
author = {ZELENINA, MARINA and ZELENIN, SERGEY and APERIA, ANITA},
title = {{Water Channels (Aquaporins) and Their Role for Postnatal Adaptation}},
journal = {Pediatric research},
year = {2005},
volume = {57},
number = {5 Part 2},
pages = {47R},
month = may
}
@article{Anonymous:llsmCU1o,
title = {{Auk 1995 Mauck}},
year = {2003},
pages = {10},
month = sep
}
@article{Ingolia:2009dp,
author = {Ingolia, N T and Ghaemmaghami, S and Newman, J R S and Weissman, J S},
title = {{Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5924},
pages = {218--223},
month = apr
}
@article{Panhuis:2006kp,
author = {Panhuis, T M},
title = {{Molecular Evolution and Population Genetic Analysis of Candidate Female Reproductive Genes in \textit{Drosophila}}},
journal = {Genetics},
year = {2006},
volume = {173},
number = {4},
pages = {2039--2047},
month = may
}
@article{Crisp:2009gn,
author = {Crisp, Michael D and Arroyo, Mary T K and Cook, Lyn G and Gandolfo, Maria A and Jordan, Gregory J and Mcglone, Matt S and Weston, Peter H and Westoby, Mark and Wilf, Peter and Linder, H Peter},
title = {{Phylogenetic biome conservatism on a global scale}},
journal = {Nature},
year = {2009},
volume = {458},
number = {7239},
pages = {754--756},
month = feb
}
@article{Gilchrist:2007dq,
author = {Gilchrist, Jason S and Russell, andrew F},
title = {{Who cares? Individual contributions to pup care by breeders vs non-breeders in the cooperatively breeding banded mongoose (Mungos mungo)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {61},
number = {7},
pages = {1053--1060},
month = jan
}
@article{Parmley:2006kl,
author = {Parmley, J L},
title = {{Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {23},
number = {2},
pages = {301--309},
month = sep
}
@article{Waibel:2011hp,
author = {Waibel, Markus and Waibel, Markus and Floreano, Dario and Floreano, Dario and Keller, Laurent},
title = {{A Quantitative Test of Hamilton's Rule for the Evolution of Altruism.}},
journal = {PLOS Biology},
year = {2011},
volume = {9},
number = {5},
pages = {e1000615},
month = may
}
@article{Hosken:2001tk,
author = {Hosken, DJ and Ward, PI},
title = {{Experimental evidence for testis size evolution via sperm competition}},
journal = {Ecology Letters},
year = {2001},
volume = {4},
number = {1},
pages = {10--13}
}
@article{Cole:2009dm,
author = {Cole, J R and Wang, Q and Cardenas, E and Fish, J and Chai, B and Farris, R J and Kulam-Syed-Mohideen, A S and McGarrell, D M and Marsh, T and Garrity, G M and Tiedje, J M},
title = {{The Ribosomal Database Project: improved alignments and new tools for rRNA analysis}},
journal = {Nucleic Acids Research},
year = {2009},
volume = {37},
number = {Database},
pages = {D141--D145},
month = jan
}
@article{Campos:2011wp,
author = {Campos, R and Storz, J},
title = {{Copy number polymorphism in the a-globin gene cluster of European rabbit}},
year = {2011}
}
@article{Barrett:2011km,
author = {Barrett, Rowan D H and Barrett, Rowan D H and Hoekstra, Hopi E and Hoekstra, Hopi E},
title = {{Molecular spandrels: tests of adaptation at the genetic level.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {11},
pages = {767--780},
month = nov
}
@article{CluttonBrock:2010hya,
author = {Clutton-Brock, Tim and Sheldon, Ben C},
title = {{Individuals and populations: the role of long-term, individual-based studies of animals in ecology and evolutionary biology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {10},
pages = {562--573},
month = oct
}
@article{Rojek:2006dg,
author = {Rojek, A and Rojek, A and Fuchtbauer, EM and Fuchtbauer, EM and Kwon, TH and Kwon, TH and Frokiaer, J and Nielsen, S},
title = {{Severe urinary concentrating defect in renal collecting duct-selective AQP2 conditional-knockout mice}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2006},
volume = {103},
number = {15},
pages = {6037--6042}
}
@article{Kristiansson:2009de,
author = {Kristiansson, Erik and Asker, Noomi and F{\"o}rlin, Lars and Larsson, DG Joakim},
title = {{Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {345}
}
@article{WETTON:1991vq,
author = {WETTON, JH and PARKIN, DT},
title = {{AN ASSOCIATION BETWEEN FERTILITY AND CUCKOLDRY IN THE HOUSE SPARROW, PASSER-DOMESTICUS}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1991},
volume = {245},
number = {1314},
pages = {227--233}
}
@article{Eklund:2000ws,
author = {Eklund, AC and Ober, C},
title = {{Polymorphic microsatellite markers within the MHC of \textit{\textit{Peromyscus} polionotus}}},
journal = {Hereditas},
year = {2000},
volume = {133},
number = {2},
pages = {179--181}
}
@incollection{Schaub:2008bl,
author = {Schaub, Stefan and Wilkins, John A and Nickerson, Peter},
title = {{Proteomics and Renal Transplantation: Searching for Novel Biomarkers and Therapeutic Targets}},
booktitle = {Proteomics for the Investigation of Acute Kidney Injury},
year = {2008},
pages = {65--75},
publisher = {KARGER},
address = {Basel},
month = apr
}
@article{Gompert:2011ca,
author = {Gompert, Z and Buerkle, C A},
title = {{A Hierarchical Bayesian Model for Next-Generation Population Genomics}},
journal = {Genetics},
year = {2011},
volume = {187},
number = {3},
pages = {903--917},
month = mar
}
@article{Winternitz:2012co,
author = {Winternitz, J C and Winternitz, J C and Yabsley, M J and Yabsley, M J and Altizer, S M and Altizer, S M},
title = {{Parasite infection and host dynamics in a naturally fluctuating rodent population}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2012},
volume = {90},
number = {9},
pages = {1149--1160},
month = sep
}
@article{Glaser:1925tz,
author = {Glaser, R W},
title = {{Hydrogen ion concentrations in the blood of insects.}},
journal = {The Journal of general physiology},
year = {1925},
volume = {7},
number = {5},
pages = {599--602}
}
@article{Fitzpatrick:2009kf,
author = {Fitzpatrick, J L and Montgomerie, R and Desjardins, J K and Stiver, K A and Kolm, N and Balshine, S},
title = {{From the Cover: Female promiscuity promotes the evolution of faster sperm in cichlid fishes}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {4},
pages = {1128--1132},
month = jan
}
@booklet{Kuhn:1962vq,
title = {{The Structure of Scientific Revolutions}},
author = {Kuhn, TS},
howpublished = {The University of Chicago Press},
address = {Chicago},
year = {1962}
}
@article{Sakaluk:2006uh,
author = {Sakaluk, SK and Avery, RL and Avery, RL and Weddle, CB and Weddle, CB},
title = {{Cryptic sexual conflict in gift-giving insects: Chasing the chase-away}},
journal = {The American Naturalist},
year = {2006},
volume = {167},
number = {1},
pages = {94--104}
}
@article{Donaldson:2008cn,
author = {Donaldson, Z R and Young, L J},
title = {{Oxytocin, Vasopressin, and the Neurogenetics of Sociality}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5903},
pages = {900--904},
month = nov
}
@article{Brown:2007hw,
author = {Brown, Meredeth and Carthew, Susan M and Cooper, Steven J B},
title = {{Monogamy in an Australian arboreal marsupial, the yellow-bellied glider ( Petaurus australis)}},
journal = {Australian Journal of Zoology},
year = {2007},
volume = {55},
number = {3},
pages = {185}
}
@article{Gleason:2012et,
author = {Gleason, Erin D and Holschbach, Mary A and Holschbach, Mary A and Marler, Catherine A},
title = {{Compatibility drives female preference and reproductive success in the monogamous California mouse (\textit{Peromyscus} \textit{californicus}) more strongly than male testosterone measures}},
journal = {Hormones and Behavior},
year = {2012},
volume = {61},
number = {1},
pages = {100--107},
month = jan
}
@article{Maenhout:2009jt,
author = {Maenhout, S and De Baets, B and Haesaert, G},
title = {{CoCoa: a software tool for estimating the coefficient of coancestry from multilocus genotype data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {20},
pages = {2753--2754},
month = oct
}
@article{ANDERSON:1983vt,
author = {ANDERSON, DR and Burnham, KP and WHITE, GC and WHITE, GC and OTIS, DL and OTIS, DL},
title = {{DENSITY-ESTIMATION OF SMALL-MAMMAL POPULATIONS USING A TRAPPING WEB AND DISTANCE SAMPLING METHODS}},
journal = {Ecology},
year = {1983},
volume = {64},
number = {4},
pages = {674--680}
}
@article{HernandezLopez:2008ee,
author = {Hernandez-Lopez, L and Cerda-Molina, A L and Paez-Ponce, D L and Mondragon-Ceballos, R},
title = {{The seminal coagulum favours passage of fast-moving sperm into the uterus in the black-handed spider monkey}},
journal = {Reproduction},
year = {2008},
volume = {136},
number = {4},
pages = {411--421},
month = jun
}
@article{Anonymous:j0sqXMXb,
author = {Norris, K and Evans, M R},
title = {{Ecological immunology: life history trade-offs and immune defense in birds}},
journal = {Behavioral Ecology},
year = {2000}
}
@article{vananders:2013hz,
author = {van anders, Sari M and Goodson, James L and Kingsbury, Marcy A},
title = {{Beyond {\textquotedblleft}Oxytocin~=~Good{\textquotedblright}: Neural Complexities and the Flipside of Social Bonds}},
journal = {Archives of Sexual Behavior},
year = {2013},
volume = {42},
number = {7},
pages = {1115--1118},
month = may
}
@article{LU:2012ko,
author = {LU, BIN and ZHENG, YUCHI and MURPHY, ROBERT W and ZENG, XIAOMAO},
title = {{Coalescence patterns of endemic Tibetan species of stream salamanders (Hynobiidae: Batrachuperus).}},
journal = {Molecular Ecology},
year = {2012},
month = may
}
@article{Braun:2009bg,
author = {Braun, Rosemary and Rowe, William and Schaefer, Carl and Zhang, Jinghui and Buetow, Kenneth},
title = {{Needles in the Haystack: Identifying Individuals Present in Pooled Genomic Data}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {10},
pages = {e1000668},
month = oct
}
@article{Lombardo:1999ur,
author = {Lombardo, MP and Thorpe, PA and Power, HW},
title = {{The beneficial sexually transmitted microbe hypothesis of avian copulation}},
journal = {Behavioral Ecology},
year = {1999},
volume = {10},
number = {3},
pages = {333--337}
}
@article{Pitcher:2005ff,
author = {PITCHER, T E and Dunn, P O and Whittingham, L A},
title = {{Sperm competition and the evolution of testes size in birds}},
journal = {Journal of Evolutionary Biology},
year = {2005},
volume = {18},
number = {3},
pages = {557--567},
month = mar
}
@article{Oberg:2011ho,
author = {Oberg, Fredrik and Sj{\"o}hamn, Jennie and Fischer, Gerhard and Moberg, andreas and Pedersen, anders and Neutze, Richard and Hedfalk, Kristina},
title = {{Glycosylation increases the thermostability of human aquaporin 10 protein.}},
journal = {The Journal of biological chemistry},
year = {2011},
volume = {286},
number = {36},
pages = {31915--31923},
month = sep
}
@article{COFFIN:1995wk,
author = {COFFIN, JM},
title = {{HIV POPULATION-DYNAMICS IN-VIVO - IMPLICATIONS FOR GENETIC-VARIATION, PATHOGENESIS, AND THERAPY}},
journal = {Science (New York, NY)},
year = {1995},
volume = {267},
number = {5197},
pages = {483--489}
}
@article{Giraud:2011bq,
author = {Giraud, T and Giraud, T and Shykoff, J A},
title = {{Bacterial cooperation controlled by mobile elements: kin selection versus infectivity}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {3},
pages = {277--278}
}
@article{Gillespie:2013ft,
author = {Gillespie, Meagan J and Gillespie, Meagan J and Crowley, Tamsyn M and Crowley, Tamsyn M and Haring, Volker R and Haring, Volker R and Wilson, Susanne L and Wilson, Susanne L and Harper, Jennifer A and Harper, Jennifer A and Payne, Jean S and Payne, Jean S and Green, Diane and Green, Diane and Monaghan, Paul and Monaghan, Paul and Donald, John A and Nicholas, Kevin R and Nicholas, Kevin R and Moore, Robert J and Moore, Robert J},
title = {{Transcriptome analysis of pigeon milk production � role of cornification and triglyceride synthesis genes}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {1--1},
month = mar
}
@article{Giorello:2014iv,
title = {{Characterization of the kidney transcriptome of the South American olive mouse Abrothrix olivacea}},
year = {2014},
volume = {15},
number = {1},
pages = {1--10},
month = jun
}
@article{Burney:2009cm,
author = {Burney, Curtis W and Brumfield, Robb T},
title = {{Ecology Predicts Levels of Genetic Differentiation in Neotropical Birds}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {3},
pages = {358--368},
month = sep
}
@article{Dalziel:2014im,
author = {Dalziel, Anne C and Bittman, Jesse and Mandic, Milica and Ou, Michelle and Schulte, Patricia M},
title = {{Origins and functional diversification of salinity-responsive Na +, K +ATPase $\alpha$1 paralogs in salmonids}},
journal = {Molecular Ecology},
year = {2014},
pages = {n/a--n/a},
month = jun
}
@article{Singhal:2013dq,
author = {Singhal, Sonal},
title = {{\textit{De novo}transcriptomic analyses for non-model organisms: an evaluation of methods across a multi-species data set}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {n/a--n/a},
month = feb
}
@article{Taylor:1996vb,
author = {Taylor, PD},
title = {{Inclusive fitness arguments in genetic models of behaviour}},
journal = {Journal of Mathematical Biology},
year = {1996},
volume = {34},
number = {5-6},
pages = {654--674}
}
@article{Chen:2010ke,
author = {Chen, Kehong and Chen, Kehong and Wang, Yong-tang and Wang, Yong-tang and Gu, Wei and Gu, Wei and Zeng, Ling and Zeng, Ling and Jiang, Dong-po and Jiang, Dong-po and Du, Ding-yuan and Du, Ding-yuan and Hu, Ping and Hu, Ping and Duan, Zhao-xia and Duan, Zhao-xia and Liu, Qing and Huang, S. N. and Huang, S. N. and Jiang, Jian-xin and Jiang, Jian-xin},
title = {{Functional significance of the Toll-like receptor 4 promoter gene polymorphisms in the Chinese Han population}},
journal = {Critical Care Medicine},
year = {2010},
volume = {38},
number = {5},
pages = {1292--1299}
}
@article{Berthier:2002uv,
author = {Berthier, P and Beaumont, MA and Cornuet, JM and Luikart, G},
title = {{Likelihood-based estimation of the effective population size using temporal changes in allele frequencies: A genealogical approach}},
journal = {Genetics},
year = {2002},
volume = {160},
number = {2},
pages = {741--751}
}
@article{Baton:2009hw,
author = {Baton, Luke A and Robertson, Anne and Warr, Emma and Strand, Michael R and Dimopoulos, George},
title = {{Genome-wide transcriptomic profiling of Anopheles gambiae hemocytes reveals pathogen-specific signatures upon bacterial challenge and Plasmodium berghei infection}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {257}
}
@article{Casey:1981wk,
author = {Casey, Timothy M},
title = {{Energetics and thermoregulation of \textit{Malacosoma} \textit{americanum} (Lepidoptera: Lasiocampidae) during hovering flight}},
journal = {Physiological Zoology},
year = {1981},
pages = {362--371}
}
@article{Zagordi:2011cs,
author = {Zagordi, Osvaldo and Zagordi, Osvaldo and Bhattacharya, Arnab and Bhattacharya, Arnab and Eriksson, Nicholas and Eriksson, Nicholas and Beerenwinkel, Niko and Beerenwinkel, Niko},
title = {{ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data}},
journal = {BMC Bioinformatics},
year = {2011},
volume = {12},
number = {1},
pages = {119}
}
@article{Hayes:1998te,
author = {Hayes, JP and Hayes, JP and Bible, CA and Bible, CA and Boone, JD and Boone, JD},
title = {{Repeatability of mammalian physiology: Evaporative water loss and oxygen consumption of \textit{Dipodomys} \textit{merriami}}},
journal = {Journal of Mammalogy},
year = {1998},
volume = {79},
number = {2},
pages = {475--485}
}
@article{Carnegie:2011ca,
author = {Carnegie, Sarah D and Carnegie, Sarah D and Fedigan, Linda M and Fedigan, Linda M and Ziegler, Toni E and Ziegler, Toni E},
title = {{Social and environmental factors affecting fecal glucocorticoids in wild, female white-faced capuchins (\textit{Cebus capucinus}).}},
journal = {American Journal of Primatology},
year = {2011},
month = apr
}
@article{Geyer:2009bh,
author = {Geyer, Laura B. and Geyer, Laura B. and Lessios, H. A.},
title = {{Lack of Character Displacement in the Male Recognition Molecule, Bindin, in Altantic Sea Urchins of the Genus Echinometra}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {9},
pages = {2135--2146}
}
@article{Williams:2012bw,
author = {Williams, L E and Wernegreen, J J},
title = {{Purifying Selection, Sequence Composition, and Context-Specific Indel Mutations Shape Intraspecific Variation in a Bacterial Endosymbiont}},
journal = {Genome Biology and Evolution},
year = {2012},
volume = {4},
number = {1},
pages = {44--51},
month = jan
}
@article{Gerhardt:2009jq,
author = {Gerhardt, H Carl and Brooks, Robert},
title = {{EXPERIMENTAL ANALYSIS OF MULTIVARIATE FEMALE CHOICE IN GRAY TREEFROGS ( HYLA VERSICOLOR): EVIDENCE FOR DIRECTIONAL AND STABILIZING SELECTION}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {10},
pages = {2504--2512},
month = oct
}
@article{DeLucaJr:2010jv,
author = {De Luca Jr, Laurival A and Pereira-Derderian, Daniela T B and Vendramini, Regina C and David, Richard B and Menani, Jos{\'e} V},
title = {{Physiology {\&} Behavior}},
journal = {Physiology {\&} Behavior},
year = {2010},
volume = {100},
number = {5},
pages = {535--544},
month = jul
}
@article{Brady:2004wz,
author = {Brady, MJ and Slade, NA},
title = {{Long-term dynamics of a grassland rodent community}},
journal = {Journal of Mammalogy},
year = {2004},
volume = {85},
number = {3},
pages = {552--561}
}
@article{Branson:2009jf,
author = {Branson, Kristin and Robie, Alice A and Bender, John and Pietro Perona and Dickinson, Michael H},
title = {{High-throughput ethomics in large groups of \textit{Drosophila}}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {6},
pages = {451--457},
month = jun
}
@article{Whitehead:2009kb,
author = {Whitehead, andrew},
title = {{Comparative mitochondrial genomics within and among species of killifish}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
annote = {model A but clade based test}
}
@article{bhanson:2012cw,
author = {Emlen, D J and Warren, I A and Johns, A and Dworkin, I and Lavine, L C},
title = {{A Mechanism of Extreme Growth and Reliable Signaling in Sexually Selected Ornaments and Weapons}},
journal = {Science (New York, NY)},
year = {2012},
volume = {337},
number = {6096},
pages = {860--864},
month = aug
}
@article{Nawy:2012ww,
author = {Nawy, Tal and Nawy, Tal},
title = {{High-resolution chromatin immunoprecipitation.}},
journal = {Nature Methods},
year = {2012},
volume = {9},
number = {2},
pages = {130--130},
month = feb
}
@article{Sunagawa:2009cv,
author = {Sunagawa, Shinichi and Wilson, Emily C and Thaler, Michael and Smith, Marc L and Caruso, Carlo and Pringle, John R and Weis, Virginia M and Medina, M{\'o}nica and Schwarz, Jodi A},
title = {{Generation and analysis of transcriptomic resources for a model system on the rise: the sea anemone Aiptasia pallida and its dinoflagellate endosymbiont}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {258}
}
@article{GINSBERG:1989wv,
author = {GINSBERG, JR and HUCK, UW},
title = {{SPERM COMPETITION IN MAMMALS}},
journal = {Trends In Ecology {\&} Evolution},
year = {1989},
volume = {4},
number = {3},
pages = {74--79}
}
@article{Heidet:2010fj,
author = {Heidet, L and Decramer, S and Pawtowski, A and Moriniere, V and Bandin, F and Knebelmann, B and Lebre, A S and Faguer, S and Guigonis, V and Antignac, C and Salomon, R},
title = {{Spectrum of HNF1B Mutations in a Large Cohort of Patients Who Harbor Renal Diseases}},
journal = {Clinical Journal of the American Society of Nephrology},
year = {2010},
volume = {5},
number = {6},
pages = {1079--1090},
month = jun
}
@article{Adrian:2008ix,
author = {Adrian, Oliver and Kaiser, Sylvia and Sachser, Norbert and Jandewerth, Pia and L{\"o}ttker, Petra and Epplen, J{\"o}rg T and Hennessy, Michael B},
title = {{Female influences on pair formation, reproduction and male stress responses in a monogamous cavy (Galea monasteriensis)}},
journal = {Hormones and Behavior},
year = {2008},
volume = {53},
number = {3},
pages = {403--412},
month = mar
}
@article{Anonymous:2010ux,
title = {{How to use the DEGseq Package}},
year = {2010},
pages = {1--14},
month = may
}
@article{Anonymous:DJA1iqWr,
title = {{Biotechniques 1996 Brownstein}},
year = {1999},
pages = {5},
month = mar
}
@article{Org:2009in,
author = {Org, E and Eyheramendy, S and Juhanson, P and Gieger, C and Lichtner, P and Klopp, N and Veldre, G and Doring, A and Viigimaa, M and Sober, S and Tomberg, K and Eckstein, G and {KORA} and Kelgo, P and Rebane, T and Shaw-Hawkins, S and Howard, P and Onipinla, A and Dobson, R J and Newhouse, S J and BROWN, M and Dominiczak, A and Connell, J and Samani, N and Farrall, M and {BRIGHT} and Caulfield, M J and Munroe, P B and Illig, T and Wichmann, H E and Meitinger, T and Laan, M},
title = {{Genome-wide scan identifies CDH13 as a novel susceptibility locus contributing to blood pressure determination in two European populations}},
journal = {Human Molecular Genetics},
year = {2009},
volume = {18},
number = {12},
pages = {2288--2296},
month = may
}
@article{Leuner:2011co,
author = {Leuner, Benedetta and Caponiti, Julia M and Gould, Elizabeth},
title = {{Oxytocin stimulates adult neurogenesis even under conditions of stress and elevated glucocorticoids.}},
journal = {Hippocampus},
year = {2011},
month = jun
}
@article{Bagley:1999um,
author = {Bagley, MJ and Lindquist, DG and Geller, JB},
title = {{Microsatellite variation, effective population size, and population genetic structure of vermilion snapper, Rhomboplites aurorubens, off the southeastern USA}},
journal = {Marine Biology},
year = {1999},
volume = {134},
number = {4},
pages = {609--620}
}
@article{Fukamachi:2009dr,
author = {Fukamachi, Shoji and Kinoshita, Masato and Aizawa, Kouichi and Oda, Shoji and Meyer, Axel and Mitani, Hiroshi},
title = {{Dual control by a single gene of secondary sexual characters and mating preferences in medaka}},
journal = {BMC biology},
year = {2009},
volume = {7},
number = {1},
pages = {64}
}
@article{Vedder:2010dy,
author = {Vedder, Oscar and Vedder, Oscar and Komdeur, Jan and Velde, Marco and Velde, Marco and Schut, Elske and Schut, Elske and Magrath, Michael J L and Magrath, Michael J L},
title = {{Polygyny and extra-pair paternity enhance the opportunity for sexual selection in blue tits}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {65},
number = {4},
pages = {741--752},
month = oct
}
@article{Milano:2011wz,
author = {Milano, Ilaria and Babbucci, Massimiliano and Panitz, Frank and Ogden, Rob and Nielsen, Rasmus O and Taylor, Martin I and Helyar, Sarah J and Carvalho, Gary R and Espi{\~n}eira, Montserrat and Atanassova, Miroslava and Tinti, Fausto and Maes, Gregory E and Patarnello, Tomaso and {FishPopTrace Consortium} and Bargelloni, Luca},
title = {{Novel tools for conservation genomics: comparing two high-throughput approaches for SNP discovery in the transcriptome of the European hake.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {11},
pages = {e28008}
}
@article{Stefflova:2011wc,
author = {Stefflova, K and Dulik, M and Barnholtz-Sloan, J and Pai, A},
title = {{Dissecting the Within-Africa Ancestry of Populations of African Descent in the Americas}},
journal = {PLOS ONE},
year = {2011}
}
@article{RaghuChandramohan:2013uz,
author = {Raghu Chandramohan, Po-Yen Wu John H Phan May D Wang},
title = {{Benchmarking RNA-Seq Quantification Tools}},
year = {2013},
pages = {1--4},
month = apr
}
@article{Whitney:2010ct,
author = {Whitney, Kenneth D and Garland, Theodore},
title = {{Did Genetic Drift Drive Increases in Genome Complexity?}},
journal = {PLOS Genetics},
year = {2010},
volume = {6},
number = {8},
pages = {e1001080},
month = aug
}
@article{Levine:2010bv,
author = {Levine, Mike and Levine, Mike},
title = {{Transcriptional enhancers in animal development and evolution.}},
journal = {Current biology : CB},
year = {2010},
volume = {20},
number = {17},
pages = {R754--63},
month = sep
}
@article{Vanaphan:2012hm,
author = {Vanaphan, Nancy and Vanaphan, Nancy and Dauwalder, Brigitte and Dauwalder, Brigitte and Zufall, Rebecca A. and Zufall, Rebecca A.},
title = {{Diversification of takeout, a male-biased gene family in \textit{Drosophila}}},
journal = {Gene},
year = {2012},
volume = {491},
number = {2},
pages = {142--148}
}
@article{Heled:2010ia,
author = {Heled, J and Drummond, A J},
title = {{Bayesian Inference of Species Trees from Multilocus Data}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {3},
pages = {570--580},
month = feb
}
@article{IANC1592120028BO,
author = {Iancu, Ovidiu D and Kawane, Sunita and Bottomly, Daniel and Searles, Robert and Hitzemann, Robert and McWeeney, Shannon},
title = {{Utilizing RNA-Seq data for \textit{de novo} coexpression network inference.}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {12},
pages = {1592--1597},
month = jun
}
@article{Little:2009iv,
author = {Little, Ainslie EF and Currie, Cameron R},
title = {{Parasites may help stabilize cooperative relationships}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {124}
}
@article{CURRIE:1991wa,
author = {CURRIE, KL},
title = {{GENORM - A GENERALIZED NORM CALCULATION}},
journal = {Computers {\&} Geosciences},
year = {1991},
volume = {17},
number = {1},
pages = {77--89}
}
@article{Bastide:2013ka,
author = {Bastide, H{\'e}lo{\"\i}se and Betancourt, andrea and Betancourt, andrea and Nolte, Viola and Nolte, Viola and Tobler, Raymond and Tobler, Raymond and St{\"o}be, Petra and St{\"o}be, Petra and Futschik, andreas and Schl{\"o}tterer, Christian},
title = {{A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in \textit{Drosophila} \textit{melanogaster}}},
journal = {PLOS Genetics},
year = {2013},
volume = {9},
number = {6},
pages = {e1003534},
month = jun
}
@article{Scaduto:2010dx,
author = {Scaduto, D I and Brown, J M and Haaland, W C and Zwickl, D J and Hillis, D M and Metzker, M L},
title = {{Inaugural Article: Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {50},
pages = {21242--21247},
month = dec
}
@article{RIDDLE:1995um,
author = {RIDDLE, BR and RIDDLE, BR},
title = {{MOLECULAR BIOGEOGRAPHY IN THE POCKET MICE (PEROGNATHUS AND CHAETODIPUS) AND GRASSHOPPER MICE (ONYCHOMYS) - THE LATE CENOZOIC DEVELOPMENT OF A NORTH-AMERICAN ARIDLANDS RODENT GUILD}},
journal = {Journal of Mammalogy},
year = {1995},
volume = {76},
number = {2},
pages = {283--301}
}
@article{Olmstead:2012wg,
author = {Olmstead, Richard},
title = {{Phylogeny and biogeography in Solanaceae, Verbenaceae and Bignoniaceae: a comparison of continental and intercontinental diversification patterns}},
year = {2012},
pages = {1--23},
month = dec
}
@article{RamosOnsins:2002vn,
author = {Ramos-Onsins, SE and Rozas, J},
title = {{Statistical properties of new neutrality tests against population growth}},
journal = {Molecular Biology and Evolution},
year = {2002},
volume = {19},
number = {12},
pages = {2092--2100}
}
@article{Chan:2006et,
author = {Chan, Yvonne L and anderson, Christian N K and Hadly, Elizabeth A},
title = {{Bayesian Estimation of the Timing and Severity of a Population Bottleneck from Ancient DNA}},
journal = {PLOS Genetics},
year = {2006},
volume = {2},
number = {4},
pages = {e59}
}
@article{Bryant:2008eb,
author = {Bryant, J A and Lamanna, C and Morlon, H and Kerkhoff, A J and Enquist, B J and Green, J L},
title = {{Colloquium Paper: Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {Supplement 1},
pages = {11505--11511},
month = aug
}
@article{Santamaria:2009km,
author = {Santamaria, R and Theron, R},
title = {{Treevolution: visual analysis of phylogenetic trees}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {15},
pages = {1970--1971},
month = jul
}
@article{Mathews:2007br,
author = {Mathews, L M},
title = {{Evidence for high rates of in-pair paternity in the socially monogamous snapping shrimp Alpheus angulosus}},
journal = {Aquatic Biology},
year = {2007},
volume = {1},
pages = {55--62}
}
@article{Mailund:2011dv,
author = {Mailund, Thomas and Dutheil, Julien Y and Hobolth, Asger and Lunter, Gerton and Schierup, Mikkel H},
title = {{Estimating divergence time and ancestral effective population size of bornean and sumatran orangutan subspecies using a coalescent hidden markov model.}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {3},
pages = {e1001319},
month = mar
}
@article{Lin:2009wt,
author = {Lin, Ting-Ting and You, En-Min and Lin, Y Kirk},
title = {{SOCIAL AND GENETIC MATING SYSTEMS OF THE ASIAN LESSER WHITE-TOOTHED SHREW, CROCIDURA SHANTUNGENSIS, IN TAIWAN}},
journal = {Journal of Mammalogy},
year = {2009},
volume = {90},
number = {6},
pages = {1370--1380}
}
@article{Schaschl:2006ic,
author = {Schaschl, H and Schaschl, H and Wandeler, P and Wandeler, P and Suchentrunk, F and Suchentrunk, F and Obexer-Ruff, G and Obexer-Ruff, G and Goodman, S J and Goodman, S J},
title = {{Selection and recombination drive the evolution of MHC class II DRB diversity in ungulates}},
journal = {Heredity},
year = {2006},
volume = {97},
number = {6},
pages = {427--437}
}
@article{Gordon:2009ie,
author = {Gordon, Richard and Poulin, Bryan},
title = {{Cost of the NSERC Science Grant Peer Review System Exceeds the Cost of Giving Every Qualified Researcher a Baseline Grant}},
journal = {Accountability in Research},
year = {2009},
volume = {16},
number = {1},
pages = {13--40},
month = jan
}
@article{Olsson:2009hg,
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {1},
month = jan
}
@article{Briskie:1992ug,
author = {Briskie, JV and Montgomerie, R},
title = {{SPERM SIZE AND SPERM COMPETITION IN BIRDS}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1992},
volume = {247},
number = {1319},
pages = {89--95}
}
@article{Malhis:2010em,
author = {Malhis, N and Jones, S J M},
title = {{High quality SNP calling using Illumina data at shallow coverage}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {8},
pages = {1029--1035},
month = apr
}
@article{Bradley:2007jo,
author = {Feng, Bing-Jian and Sun, Liang-Dan and Soltani-Arabshahi, Razieh and Bowcock, Anne M and Nair, Rajan P and Stuart, Philip and Elder, James T and Schrodi, Steven J and Begovich, Ann B and Abecasis, Gon{\c c}alo R and Zhang, Xue-Jun and Callis-Duffin, Kristina P and Krueger, Gerald G and Goldgar, David E},
title = {{Toward a Molecular Phylogeny for \textit{Peromyscus}: Evidence from Mitochondrial Cytochrome- b Sequences}},
journal = {Journal of Mammalogy},
year = {2007},
volume = {88},
number = {5},
pages = {1146--1159},
month = oct
}
@article{Cabral:2008di,
author = {Cabral, Larry G and Foley, Brad R and Nuzhdin, Sergey V},
title = {{Does Sex Trade with Violence among Genotypes in \textit{Drosophila} \textit{melanogaster}?}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {4},
pages = {e1986},
month = apr
}
@article{Bowen:2006hg,
author = {Bowen, L and ALDRIDGE, B M and DeLong, R and Melin, S and Godinez, C and Zavala, A and Gulland, F and Lowenstine, L and STOTT, J L and JOHNSON, M L},
title = {{MHC gene configuration variation in geographically disparate populations of California sea lions (Zalophus californianus)}},
journal = {Molecular Ecology},
year = {2005},
volume = {15},
number = {2},
pages = {529--533},
month = dec
}
@article{Gero:2009kk,
author = {Gero, S and Engelhaupt, D and Rendell, L and Whitehead, H},
title = {{Who Cares? Between-group variation in alloparental caregiving in sperm whales}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {4},
pages = {838--843},
month = jul
}
@article{Firman:2008jg,
author = {Firman, R C and Simmons, L W},
title = {{Polyandry, sperm competition, and reproductive success in mice}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {4},
pages = {695--702},
month = jul
}
@article{Atkinson:2008cy,
author = {Atkinson, Q D and Gray, R D and Drummond, A J},
title = {{mtDNA Variation Predicts Population Size in Humans and Reveals a Major Southern Asian Chapter in Human Prehistory}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {25},
number = {2},
pages = {468--474},
month = jan
}
@article{Pilot:2009fa,
author = {Pilot, M and DAHLHEIM, M E and Hoelzel, A R},
title = {{Social cohesion among kin, gene flow without dispersal and the evolution of population genetic structure in the killer whale ( Orcinus orca)}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {1},
pages = {20--31},
month = jan
}
@article{Kanazawa:2005fl,
author = {Kanazawa, Satoshi},
title = {{Big and tall parents have more sons: Further generalizations of the Trivers{\textendash}Willard hypothesis}},
journal = {Journal of Theoretical Biology},
year = {2005},
volume = {235},
number = {4},
pages = {583--590},
month = aug
}
@article{Narraway:2010bu,
author = {Narraway, C and Hunt, J and Wedell, N and Hosken, D J},
title = {{Genotype-by-environment interactions for female preference}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {12},
pages = {2550--2557},
month = oct
}
@article{Narum:2013fw,
author = {Narum, Shawn R and Buerkle, C Alex and Davey, John W and Miller, Michael R and Hohenlohe, Paul A},
title = {{Genotyping-by-sequencing in ecological and conservation genomics.}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {11},
pages = {2841--2847},
month = jun
}
@article{Paszkiewicz:2010dla,
author = {Studholme, David J},
title = {{\textit{De novo} assembly of short sequence reads.}},
journal = {Briefings In Bioinformatics},
year = {2010},
volume = {11},
number = {5},
pages = {457--472},
month = sep
}
@article{Nickel:2008fh,
author = {Nickel, Gabrielle C and Nickel, Gabrielle C and Tefft, David L and Tefft, David L and Goglin, Karrie and Goglin, Karrie and Adams, Mark D and Adams, Mark D},
title = {{An empirical test for branch-specific positive selection}},
journal = {Genetics},
year = {2008},
volume = {179},
number = {4},
pages = {2183--2193}
}
@article{Sjodin:2005fm,
author = {Sjodin, P},
title = {{On the Meaning and Existence of an Effective Population Size}},
journal = {Genetics},
year = {2005},
volume = {169},
number = {2},
pages = {1061--1070},
month = feb
}
@article{Debban:2013ht,
author = {Debban, C L and Dyer, K A},
title = {{No evidence for behavioural adaptations to nematode parasitism by the fly \textit{Drosophila} putrida}},
journal = {Journal of Evolutionary Biology},
year = {2013},
pages = {n/a--n/a},
month = may
}
@article{Griffin:2013cf,
author = {Griffin, Ashleigh S and Alonzo, Suzanne H and Cornwallis, Charlie K},
title = {{Why do cuckolded males provide paternal care?}},
journal = {PLOS Biology},
year = {2013},
volume = {11},
number = {3},
pages = {e1001520},
month = mar
}
@article{vanSomeren:2010jo,
author = {Van Someren, E J W},
title = {{Doing with less sleep remains a dream}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {37},
pages = {16003--16004},
month = sep
}
@article{Jiang:2009bw,
author = {Jiang, Hui and Wong, Wing Hung},
title = {{Statistical inferences for isoform expression in RNA-Seq}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {8},
pages = {1026--1032}
}
@article{Grafen:2006fg,
author = {Grafen, Alan},
title = {{Optimization of inclusive fitness}},
journal = {Journal of Theoretical Biology},
year = {2006},
volume = {238},
number = {3},
pages = {541--563},
month = feb
}
@article{Cronin:2009cn,
author = {Cronin, M A and Amstrup, S C and TALBOT, S L and SAGE, G K and Amstrup, K S},
title = {{Genetic Variation, Relatedness, and Effective Population Size of Polar Bears (Ursus maritimus) in the southern Beaufort Sea, Alaska}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {6},
pages = {681--690},
month = nov
}
@article{Thuman:2003vi,
author = {Thuman, KA and Widemo, F and Griffith, SC},
title = {{Condition-dependent sex allocation in a lek-breeding wader, the ruff (Philomachus pugnax)}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {1},
pages = {213--218}
}
@article{Kleven:2004ep,
author = {Kleven, Oddmund and Lifjeld, Jan T},
title = {{Extrapair paternity and offspring immunocompetence in the reed bunting, Emberiza schoeniclus}},
journal = {Animal Behaviour},
year = {2004},
volume = {68},
number = {2},
pages = {283--289},
month = aug
}
@article{Haydock:2003ve,
author = {Haydock, J and Koenig, WD},
title = {{Patterns of reproductive skew in the polygynandrous acorn woodpecker}},
journal = {The American Naturalist},
year = {2003},
volume = {162},
number = {3},
pages = {277--289}
}
@article{Anthony:2000tb,
author = {Anthony, LL and Anthony, LL and Blumstein, DT and Blumstein, DT},
title = {{Integrating behaviour into wildlife conservation: the multiple ways that behaviour can reduce N$_{e}$}},
journal = {Biological Conservation},
year = {2000},
volume = {95},
number = {3},
pages = {303--315}
}
@article{Rahardja:2011ca,
author = {Rahardja, D P and Toleng, A L and Lestari, V S},
title = {{Thermoregulation and water balance in fat-tailed sheep and Kacang goat under sunlight exposure and water restriction in a hot and dry area.}},
journal = {Animal : an international journal of animal bioscience},
year = {2011},
volume = {5},
number = {10},
pages = {1587--1593},
month = aug
}
@article{Douglass:2000th,
author = {Douglass, RJ and Kuenzi, AJ and Wilson, T and van Horne, RC},
title = {{Effects of bleeding nonanesthetized wild rodents on handling mortality and subsequent recapture}},
journal = {Journal of Wildlife Diseases},
year = {2000},
volume = {36},
number = {4},
pages = {700--704}
}
@article{Shorter:2012ib,
author = {Shorter, Kimberly R and Crossland, Janet P and Webb, Denessia and Szalai, Gabor and Felder, Michael R and Vrana, Paul B},
title = {{\textit{Peromyscus} as a Mammalian Epigenetic Model}},
journal = {Genetics Research International},
year = {2012},
volume = {2012},
pages = {1--11}
}
@article{Pond:2009hq,
author = {Kosakovsky Pond, S and Wadhawan, S and Chiaromonte, F and Ananda, G and Chung, W Y and Taylor, J and Nekrutenko, A and {The Galaxy Team}},
title = {{Windshield splatter analysis with the Galaxy metagenomic pipeline}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {11},
pages = {2144--2153},
month = nov
}
@article{Ophir:2008cc,
author = {Ophir, A G and Wolff, J O and Phelps, S M},
title = {{Variation in neural V1aR predicts sexual fidelity and space use among male prairie voles in semi-natural settings}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {4},
pages = {1249--1254},
month = jan
}
@article{Barbosa:2010fd,
author = {Barbosa, M and Dornelas, M and Magurran, A E},
title = {{Effects of polyandry on male phenotypic diversity}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {11},
pages = {2442--2452},
month = sep
}
@article{Alda:2009fv,
author = {Alda, Fernando and Gaitero, Tania and Su{\'a}rez, M{\'o}nica and Doadrio, Ignacio},
title = {{Molecular characterisation and recent evolution of myxoma virus in Spain}},
journal = {Archives of Virology},
year = {2009},
volume = {154},
number = {10},
pages = {1659--1670},
month = sep
}
@article{Castoe:2009wl,
author = {Castoe, T and de Koning, A and Kim, H and Gu, W and Noonan, B},
title = {{Evidence for an ancient adaptive episode of convergent molecular evolution.}},
journal = {Proceedings of the National Academy of Sciences of the {\ldots}},
year = {2009}
}
@article{Frank:2013ha,
author = {Frank, S. A.},
title = {{Natural selection. VI. Partitioning the information in fitness and characters by path analysis}},
journal = {Journal of Evolutionary Biology},
year = {2013},
pages = {n/a--n/a},
month = jan
}
@article{Hyde:2008gd,
author = {Hyde, J R and Kimbrell, C A and Budrick, J E and Lynn, E A and Vetter, R D},
title = {{Cryptic speciation in the vermilion rockfish (Sebastes miniatus) and the role of bathymetry in the speciation process}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {4},
pages = {1122--1136},
month = feb
}
@article{Chiori:2009gf,
author = {Chiori, Roxane and Jager, Muriel and Denker, Elsa and Wincker, Patrick and Da Silva, Corinne and Le Guyader, Herve and Manuel, Michael and Queinnec, Eric},
title = {{Are Hox Genes Ancestrally Involved in Axial Patterning? Evidence from the Hydrozoan Clytia hemisphaerica (Cnidaria)}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {1},
pages = {e4231},
month = jan
}
@article{Becker:2012kh,
author = {Becker, E.A. and Petruno, S. and Marler, C.A.},
title = {{A Comparison of Scent Marking between a Monogamous and Promiscuous Species of \textit{Peromyscus}: Pair Bonded Males Do Not Advertise to Novel Females}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {2},
pages = {e32002}
}
@article{Falkenberg:1998vg,
author = {Falkenberg, JC and Clarke, JA and Clarke, JA},
title = {{Microhabitat use of deer mice: Effects of interspecific interaction risks}},
journal = {Journal of Mammalogy},
year = {1998},
volume = {79},
number = {2},
pages = {558--565}
}
@article{Cutrera:2006wl,
author = {Cutrera, AP and Lacey, EA and Busch, C},
title = {{Intraspecific variation in effective population size in talar tuco-tucos (\emph{\textit{Ctenomys} talarum}): The role of demography}},
journal = {Journal of Mammalogy},
year = {2006},
volume = {87},
number = {1},
pages = {108--116}
}
@article{Anonymous:2007tz,
title = {{foraging in the desert ant,}},
year = {2007},
pages = {1--9},
month = mar
}
@article{Li:2010cl,
author = {Li, Bo and Ruotti, Victor and Ruotti, Victor and Stewart, Ron M and Stewart, Ron M and Thomson, James A and Thomson, James A and Dewey, Colin N},
title = {{RNA-Seq gene expression estimation with read mapping uncertainty}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {4},
pages = {493--500}
}
@article{Lank:1995vj,
author = {Lank, DB and Smith, CM and Hanotte, O and Hanotte, O and Burke, T and Cooke, F and Cooke, F},
title = {{GENETIC POLYMORPHISM FOR ALTERNATIVE MATING-BEHAVIOR IN LEKKING MALE RUFF PHILOMACHUS-PUGNAX}},
journal = {Nature},
year = {1995},
volume = {378},
number = {6552},
pages = {59--62}
}
@article{vandenAbbeele:2010gd,
author = {van den Abbeele, Jan and Caljon, Guy and de Ridder, Karin and de Baetselier, Patrick and Coosemans, Marc},
title = {{Trypanosoma brucei Modifies the Tsetse Salivary Composition, Altering the Fly Feeding Behavior That Favors Parasite Transmission}},
journal = {PLOS pathogens},
year = {2010},
volume = {6},
number = {6},
pages = {e1000926},
month = jun
}
@article{Ma:1998tm,
author = {Ma, TH and Ma, TH and Yang, BX and Yang, BX and Gillespie, A and Gillespie, A and Carlson, EJ and Carlson, EJ and Epstein, CJ and Epstein, CJ and Verkman, AS and Verkman, AS},
title = {{Severely impaired urinary concentrating ability in transgenic mice lacking aquaporin-1 water channels}},
journal = {The Journal of biological chemistry},
year = {1998},
volume = {273},
number = {8},
pages = {4296--4299}
}
@article{Chen:2009bx,
author = {Chen, Y and Souaiaia, T and Chen, T},
title = {{PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {19},
pages = {2514--2521},
month = sep
}
@article{BroadInstituteSequencingPlatformandWholeGenomeAssemblyTeam:2011fq,
author = {{Broad Institute Sequencing Platform and Whole Genome Assembly Team} and Team, Baylor College of Medicine Human Genome Sequencing Center Sequencing and {Genome Institute at Washington University} and {Broad Institute Sequencing Platform and Whole Genome Assembly Team} and Team, Baylor College of Medicine Human Genome Sequencing Center Sequencing and {Genome Institute at Washington University}},
title = {{A high-resolution map of human evolutionary constraint using 29 mammals}},
journal = {Nature},
year = {2011},
volume = {478},
number = {7370},
pages = {476--481},
month = oct
}
@article{Fitzgerald:2012cb,
author = {Fitzgerald, Terrence D and Miller, Steven and Smith, Michael},
title = {{Thermal properties of the tent of early instar colonies of the eastern tent caterpillar, \textit{Malacosoma} \textit{americanum}(Lepidoptera: Lasiocampidae)}},
journal = {Journal of Thermal Biology},
year = {2012}
}
@article{Wolf:2009cs,
author = {Wolf, Mosheh and Wolf, Mosheh and Friggens, Michael and Friggens, Michael and Salazar-Bravo, Jorge and Salazar-Bravo, Jorge},
title = {{Does weather shape rodents? Climate related changes in morphology of two heteromyid species.}},
journal = {Die Naturwissenschaften},
year = {2009},
volume = {96},
number = {1},
pages = {93--101},
month = jan
}
@article{Benedict:2009ut,
author = {Benedict, L},
title = {{Long-Term Occupancy of Home Ranges and Short-Term Changes in Use of Habitat by California {\ldots}}},
journal = {The Southwestern Naturalist},
year = {2009}
}
@article{Xia:1998wl,
author = {Xia, XH and Xia, XH},
title = {{The rate heterogeneity of nonsynonymous substitutions in mammalian mitochondrial genes}},
journal = {Molecular Biology and Evolution},
year = {1998},
volume = {15},
number = {3},
pages = {336--344}
}
@article{Klepsatel:2013fs,
author = {Klepsatel, P and Klepsatel, P and G{\'a}likov{\'a}, M and G{\'a}likov{\'a}, M and De Maio, N and De Maio, N and Ricci, S and Ricci, S and Schlotterer, C and Flatt, T and Flatt, T},
title = {{Reproductive and post-reproductive life history of wild-caught \textit{Drosophila} \textit{melanogaster}under laboratory conditions}},
journal = {Journal of Evolutionary Biology},
year = {2013},
pages = {n/a--n/a},
month = may
}
@article{Miller:2008bv,
author = {Miller, Michael W and Swanson, Heather M and Wolfe, Lisa L and Quartarone, Fred G and Huwer, Sherri L and Southwick, Charles H and Lukacs, Paul M},
title = {{Lions and Prions and Deer Demise}},
journal = {PLOS ONE},
year = {2008},
volume = {3},
number = {12},
pages = {e4019},
month = dec
}
@article{Anonymous:2013kza,
title = {{Mol Ecol 2013 Crawford}},
year = {2013},
pages = {1--48},
month = oct
}
@article{jaltman:2011vy,
author = {{jaltman}},
title = {{TruSeq RNA}},
year = {2011},
pages = {1--126},
month = jul
}
@article{vanderMaarel:2008ke,
author = {van der Maarel, S M},
title = {{Epigenetic mechanisms in health and disease}},
journal = {Annals of the Rheumatic Diseases},
year = {2008},
volume = {67},
number = {Suppl 3},
pages = {iii97--iii100},
month = dec
}
@article{Lafferty:2012ge,
author = {Lafferty, K D and Lafferty, K D and Shaw, J C and Shaw, J C},
title = {{Comparing mechanisms of host manipulation across host and parasite taxa}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {56--66},
month = dec
}
@article{Kelly:1994jc,
author = {Kelly, C P and Kelly, C P and Pothoulakis, C and Pothoulakis, C and LaMont, J T and LaMont, J T},
title = {{Clostridium difficile colitis.}},
journal = {The New England journal of medicine},
year = {1994},
volume = {330},
number = {4},
pages = {257--262},
month = jan
}
@article{Bedulina:2013bp,
author = {Bedulina, D S and Bedulina, D S and Evgen'ev, M B and Evgen'ev, M B and Timofeyev, M A and Timofeyev, M A and Protopopova, M V and Protopopova, M V and Garbuz, D G and Garbuz, D G and Pavlichenko, V V and Pavlichenko, V V and Luckenbach, T and Luckenbach, T and Shatilina, Z M and Shatilina, Z M and Axenov-Gribanov, D V and Axenov-Gribanov, D V and Gurkov, A N and Gurkov, A N and Sokolova, I M and Sokolova, I M and Zatsepina, O G and Zatsepina, O G},
title = {{Expression patterns and organization of the hsp70genes correlate with thermotolerance in two congener endemic amphipod species ( Eulimnogammarus cyaneusand E. verrucosus) from Lake Baikal}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = jan
}
@article{Dufourny:2008er,
author = {Dufourny, Laurence and Levasseur, Anthony and Migaud, Martine and Callebaut, Isabelle and Pontarotti, Pierre and Malpaux, Benoit and Monget, Philippe},
title = {{GPR50 is the mammalian ortholog of Mel1c: Evidence of rapid evolution in mammals}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {105}
}
@article{SWARBRICK:1997ua,
author = {SWARBRICK, PA and CRAWFORD, AM},
title = {{The red deer (Cervus elaphus) contains two expressed major histocompatibility complex class II DQB genes}},
journal = {Animal Genetics},
year = {1997},
volume = {28},
number = {1},
pages = {49--51}
}
@article{Linksvayer:2009cc,
author = {Linksvayer, Timothy A and Wade, Michael J},
title = {{GENES WITH SOCIAL EFFECTS ARE EXPECTED TO HARBOR MORE SEQUENCE VARIATION WITHIN AND BETWEEN SPECIES}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {7},
pages = {1685--1696},
month = jul
}
@article{Junier:2010hl,
author = {Junier, T and Zdobnov, E M},
title = {{The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {13},
pages = {1669--1670},
month = jun
}
@article{Brownie:1997wu,
author = {Brownie, J and Brownie, J and Shawcross, S and Shawcross, S and Theaker, J and Theaker, J and Whitcombe, D and Whitcombe, D and Ferrie, R and Ferrie, R and Newton, C and Newton, C and Little, S and Little, S},
title = {{The elimination of primer-dimer accumulation in PCR}},
journal = {Nucleic Acids Research},
year = {1997},
volume = {25},
number = {16},
pages = {3235--3241}
}
@article{Yezerinac:1995uo,
author = {Yezerinac, SM and Weatherhead, PJ and Boag, PT},
title = {{Extra-Pair Paternity and the Opportunity for Sexual Selection in a Socially Monogamous Bird (\emph{Dendroica petechia})}},
journal = {Behavioral Ecology and Sociobiology},
year = {1995},
volume = {37},
number = {3},
pages = {179--188}
}
@article{Zhang:2010gd,
author = {Zhang, Fujie and Guo, Hongyan and Zheng, Huajun and Zhou, Tong and Zhou, Yijun and Wang, Shengyue and Fang, Rongxiang and Qian, Wei and Chen, Xiaoying},
title = {{Massively parallel pyrosequencing-based transcriptome analyses of small brown planthopper (\textit{Laodelphax striatellus}), a vector insect transmitting rice stripe virus (RSV)}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {303}
}
@article{Koenig:2009gy,
author = {Koenig, Walter D and Walters, Eric L and Haydock, Joseph},
title = {{Helpers and egg investment in the cooperatively breeding acorn woodpecker: testing the concealed helper effects hypothesis}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {11},
pages = {1659--1665},
month = may
}
@article{Kokko:2006gc,
author = {Kokko, Hanna and Gunnarsson, Tomas G and Morrell, Lesley J and Gill, Jennifer A},
title = {{Why do female migratory birds arrive later than males?}},
journal = {Journal of Animal Ecology},
year = {2006},
volume = {75},
number = {6},
pages = {1293--1303},
month = nov
}
@article{Close:2009gd,
author = {Close, Timothy J and Bhat, Prasanna R and Lonardi, Stefano and Wu, Yonghui and Rostoks, Nils and Ramsay, Luke and Druka, Arnis and Stein, Nils and Svensson, Jan T and Wanamaker, Steve and Bozdag, Serdar and Roose, Mikeal L and Moscou, Matthew J and Chao, Shiaoman and Varshney, Rajeev K and Sz{\H{u}}cs, P{\'e}ter and Sato, Kazuhiro and Hayes, Patrick M and Matthews, David E and Kleinhofs, andris and Muehlbauer, Gary J and DeYoung, Joseph and Marshall, David F and Madishetty, Kavitha and Fenton, Raymond D and Condamine, Pascal and Graner, andreas and Waugh, Robbie},
title = {{Development and implementation of high-throughput SNP genotyping in barley}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {582}
}
@article{Oakes:2008cg,
author = {Oakes, Robert S and Kirkhamm, Justin K and Nelson, Raoul D and Siegler, Richard L},
title = {{Duration of oliguria and anuria as predictors of chronic renal-related sequelae in post-diarrheal hemolytic uremic syndrome}},
journal = {Pediatric nephrology (Berlin, Germany)},
year = {2008},
volume = {23},
number = {8},
pages = {1303--1308},
month = may
}
@article{Barnett:2009fs,
author = {Barnett, Ross and Shapiro, Beth and Barnes, Ian and Ho, Simon Y W and Burger, Joachim and Yamaguchi, Nobuyuki and Higham, Thomas F G and Wheeler, H Todd and Rosendahl, Wilfried and Sher, andrei V and Sotnikova, Marina and Kuznetsova, Tatiana and Baryshnikov, Gennady F and Martin, Larry D and Harington, C Richard and Burns, James A and Cooper, Alan},
title = {{Phylogeography of lions ( Panthera leossp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {8},
pages = {1668--1677},
month = apr
}
@article{Otto:2009ip,
author = {Otto, Sarah P},
title = {{The Evolutionary Enigma of Sex}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {s1},
pages = {S1--S14},
month = jul
}
@article{Nelson:2006bx,
author = {Nelson, Martha I and Simonsen, Lone and Viboud, Cecile and Miller, Mark A and Taylor, Jill and George, Kirsten St and Griesemer, Sara B and Ghedin, Elodie and Sengamalay, Naomi A and Spiro, David J and Volkov, Igor and Grenfell, Bryan T and Lipman, David J and Taubenberger, Jeffery K and Holmes, Edward C},
title = {{Stochastic Processes Are Key Determinants of Short-Term Evolution in Influenza A Virus}},
journal = {PLOS pathogens},
year = {2006},
volume = {2},
number = {12},
pages = {e125}
}
@article{NIELSEN:1999vg,
author = {Nielsen, S and KWON, TAEH},
title = {{Physiology and Pathophysiology of Renal Aquaporins}},
journal = {Journal of the {\ldots}},
year = {1999}
}
@article{Cutter:2006iy,
author = {Cutter, Asher D and Charlesworth, Brian},
title = {{Selection Intensity on Preferred Codons Correlates with Overall Codon Usage Bias in Caenorhabditis remanei}},
journal = {Current Biology},
year = {2006},
volume = {16},
number = {20},
pages = {2053--2057},
month = oct
}
@article{Pilastro:2004wj,
author = {Pilastro, A and Simonato, M and Bisazza, A and Evans, JP and Evans, JP},
title = {{Cryptic female preference for colorful males in guppies}},
journal = {Evolution},
year = {2004},
volume = {58},
number = {3},
pages = {665--669}
}
@article{Ishibashi:2009bm,
author = {Ishibashi, Kenichi},
title = {{New members of mammalian aquaporins: AQP10-AQP12.}},
journal = {Handbook of experimental pharmacology},
year = {2009},
number = {190},
pages = {251--262}
}
@article{Zala:2008hy,
author = {Zala, Sarah M and Potts, Wayne K and Penn, Dustin J},
title = {{Exposing males to female scent increases the cost of controlling Salmonella infection in wild house mice}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {6},
pages = {895--900},
month = nov
}
@article{Blanckenhorn:2007cna,
author = {Blanckenhorn, W U and Arthur, B I and Meile, P and Ward, P I},
title = {{Sexual conflict over copula timing: a mathematical model and a test in the yellow dung fly}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {5},
pages = {958--966},
month = jul
}
@article{Dimopoulos:2000ws,
author = {Dimopoulos, G and Dimopoulos, G and Casavant, TL and Casavant, TL and Chang, SR and Chang, SR and Scheetz, T and Scheetz, T and Roberts, C and Roberts, C and Donohue, M and Donohue, M and Schultz, J and Schultz, J and Benes, V and Benes, V and Bork, P and Bork, P and Ansorge, W and Ansorge, W and Soares, MB and Soares, MB and Kafatos, FC and Kafatos, FC},
title = {{Anopheles gambiae pilot gene discovery project: Identification of mosquito innate immunity genes from expressed sequence tags generated from immune-competent cell lines}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {12},
pages = {6619--6624}
}
@article{Geneious:2010un,
author = {Drummond, AJ and Ashton, B and Buxton, S and Cheung, M and Cooper, A and Duran, C and Field, M and Heled, J and Kearse, M and Markowitz, S and Moir, R and Stones-Havas, S and Sturrock, S and Thierer, T and Thierer, T and Wilson, A},
title = {{Geneious}},
year = {2010},
month = mar
}
@article{Ali:1998uk,
author = {Ali, FS},
title = {{Life tables of Phytoseiulus macropilis (Banks) (Gamasida : Phytoseiidae) at different temperatures}},
journal = {Experimental {\&} Applied Acarology},
year = {1998},
volume = {22},
number = {6},
pages = {335--342}
}
@article{Natali:2013kha,
author = {Natali, Lucia and Cossu, Rosa M and Barghini, Elena and Giordani, Tommaso and Buti, Matteo and Mascagni, Flavia and Morgante, Michele and Gill, Navdeep and Kane, Nolan C and Rieseberg, Loren and Cavallini, andrea},
title = {{The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {686--28},
month = oct
}
@article{Li:2008in,
author = {Li, R and Li, Y and Kristiansen, K and Wang, J},
title = {{SOAP: short oligonucleotide alignment program}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {5},
pages = {713--714},
month = feb
}
@article{Emlen:1998uu,
author = {Emlen, ST and Wrege, PH and Webster, MS},
title = {{Cuckoldry as a cost of polyandry in the sex-role-reversed wattled jacana, \emph{\textit{Jacana jacana}}}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1998},
volume = {265},
number = {1413},
pages = {2359--2364}
}
@article{Vahed:2007eu,
author = {Vahed, Karim},
title = {{All that Glisters is not Gold: Sensory Bias, Sexual Conflict and Nuptial Feeding in Insects and Spiders}},
journal = {Ethology},
year = {2007},
volume = {113},
number = {2},
pages = {105--127},
month = feb
}
@inproceedings{Ouajd:2009up,
author = {Ouajd, Souilem and Ouajd, Souilem and Kamel, Barhoumi and Kamel, Barhoumi},
title = {{Physiological Particularities of Dromedary (Camelus dromedarius) and Experimental Implications}},
booktitle = {Scandinavian Journal of Laboratory Animal Science},
year = {2009},
pages = {19--29},
organization = {Natl Sch Vet Med, Lab Physiol {\&} Pharmacol, Sidi Thabet 2020, Tunisia}
}
@article{Chao:1992to,
author = {Chao, A},
title = {{Estimating the Number of Classes via Sample Coverage}},
journal = {Journal of The American Statistical Association},
year = {1992},
volume = {87},
number = {417},
pages = {210--217},
month = mar
}
@article{Radwan:2007ir,
author = {Radwan, J and Kawa{\l}ko, A and Kawa{\l}ko, A and W{\'o}jcik, J M and W{\'o}jcik, J M and Babik, W},
title = {{MHC-DRB3 variation in a free-living population of the European bison, Bison bonasus.}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {3},
pages = {531--540},
month = feb
}
@article{Thye:2009tn,
author = {Thye, T. and Browne, E.N. and Chinbuah, M.A. and Gyapong, J. and Osei, I. and Owusu-Dabo, E. and Brattig, N.W. and Niemann, S. and R{\"u}sch-Gerdes, S. and Horstmann, R.D.},
title = {{IL10 haplotype associated with tuberculin skin test response but not with pulmonary TB}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {5},
pages = {e5420}
}
@article{Aguilar:2008bk,
author = {Aguilar, T M and Maia, R and Santos, E S A and Macedo, R H},
title = {{Parasite levels in blue-black grassquits correlate with male displays but not female mate preference}},
journal = {Behavioral Ecology},
year = {2007},
volume = {19},
number = {2},
pages = {292--301},
month = dec
}
@article{RiosCardenas:2008eu,
author = {Rios-Cardenas, Oscar and Webster, Michael S},
title = {{A molecular genetic examination of the mating system of pumpkinseed sunfish reveals high pay-offs for specialized sneakers}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {9},
pages = {2310--2320},
month = apr
}
@article{Boetzer:2011gr,
author = {Boetzer, M and Boetzer, M and Henkel, C V and Henkel, C V and Jansen, H J and Jansen, H J and Butler, D and Butler, D and Pirovano, W and Pirovano, W},
title = {{Scaffolding pre-assembled contigs using SSPACE}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {4},
pages = {578--579},
month = feb
}
@article{Hao:2011iz,
author = {Hao, X and Jiang, R and Chen, T},
title = {{Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {5},
pages = {611--618},
month = feb
}
@article{Alcaide:2012cl,
author = {Alcaide, Miguel and Alcaide, Miguel and Rodr{\'\i}guez, Airam and Rodr{\'\i}guez, Airam and Negro, Juan Jos{\'e} and Negro, Juan Jos{\'e} and Serrano, David and Serrano, David},
title = {{Male transmission ratio distortion supports MHC-linked cryptic female choice in the lesser kestrel (Aves: Falconidae)}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
month = aug
}
@article{Carling:2003wd,
author = {Carling, MD and Wiseman, PA and Byers, JA},
title = {{Microsatellite analysis reveals multiple paternity in a population of wild pronghorn antelopes (Antilocapra americana)}},
journal = {Journal of Mammalogy},
year = {2003},
volume = {84},
number = {4},
pages = {1237--1243}
}
@article{Heckel:2003wb,
author = {Heckel, G and von Helversen, O},
title = {{Genetic mating system and the significance of harem associations in the bat Saccopteryx bilineata}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {1},
pages = {219--227}
}
@article{Smith:1993uj,
author = {Smith, Margaret F and Patton, James L},
title = {{The diversification of South American murid rodents: Evidence from mitochondrial DNA sequence data for the Akodontine tribe}},
journal = {Biological Journal of The Linnean Society},
year = {1993},
volume = {50},
number = {3},
pages = {149--177}
}
@article{Pickrell:2010bq,
author = {Pickrell, Joseph K and Marioni, John C and Pai, Athma A and Degner, Jacob F and Engelhardt, Barbara E. and Engelhardt, Barbara E. and Nkadori, Everlyne and Veyrieras, Jean-Baptiste and Veyrieras, Jean-Baptiste and Stephens, Matthew and Stephens, Matthew and Gilad, Yoav and Pritchard, Jonathan K},
title = {{Understanding mechanisms underlying human gene expression variation with RNA sequencing}},
journal = {Nature},
year = {2010},
volume = {464},
number = {7289},
pages = {768--772}
}
@article{Moreno:2001fs,
author = {Moreno, Jos{\'e} C and Pauws, Erwin and van Kampen, Antoine H C and Jedlickov{\'a}, Marcela and de Vijlder, Jan J M and Ris-Stalpers, Carrie},
title = {{Cloning of Tissue-Specific Genes Using Serial Analysis of Gene Expression and a Novel Computational Substraction Approach}},
journal = {Genomics},
year = {2001},
volume = {75},
number = {1-3},
pages = {70--76},
month = jul
}
@article{Larizza:2002tv,
author = {Larizza, A and Pesole, G and Reyes, A and Sbisa, E and Saccone, C},
title = {{Lineage specificity of the evolutionary dynamics of the mtDNA D-loop region in rodents}},
journal = {Journal of Molecular Evolution},
year = {2002},
volume = {54},
number = {2},
pages = {145--155}
}
@article{LaviMoshayoff:2010fm,
author = {Lavi-Moshayoff, V and Wasserman, G and Meir, T and Silver, J and Naveh-Many, T},
title = {{PTH increases FGF23 gene expression and mediates the high-FGF23 levels of experimental kidney failure: a bone parathyroid feedback loop}},
journal = {AJP: Renal Physiology},
year = {2010},
volume = {299},
number = {4},
pages = {F882--F889},
month = oct
}
@article{Trtkova:1995uw,
author = {Trtkova, K and Mayer, WE and OHUigin, C and Klein, J},
title = {{Mhc-DRB genes and the origin of new world monkeys}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {1995},
volume = {4},
number = {4},
pages = {408--419}
}
@article{Bonneaud:2006il,
author = {Bonneaud, C and Chastel, O and Federici, P and Westerdahl, H and Sorci, G},
title = {{Complex Mhc-based mate choice in a wild passerine}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1590},
pages = {1111--1116},
month = may
}
@article{Heinsohn:2007gl,
author = {Heinsohn, Robert and Ebert, Daniel and Legge, Sarah and Peakall, Rod},
title = {{Genetic evidence for cooperative polyandry in reverse dichromatic Eclectus parrots}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {4},
pages = {1047--1054},
month = oct
}
@article{Biro:2010ee,
author = {Biro, Peter A and Stamps, Judy A},
title = {{Do consistent individual differences in metabolic rate promote consistent individual differences in behavior?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {11},
pages = {653--659},
month = nov
}
@article{SCHWAIGER:1994tm,
author = {SCHWAIGER, FW and WEYERS, E and BUITKAMP, J and EDE, AJ and EDE, AJ and CRAWFORD, A and CRAWFORD, A and Epplen, JT},
title = {{INTERDEPENDENT MHC-DRB EXON-PLUS-INTRON EVOLUTION IN ARTIODACTYLS}},
journal = {Molecular Biology and Evolution},
year = {1994},
volume = {11},
number = {2},
pages = {239--249}
}
@article{Pickrell:2009if,
author = {Pickrell, J K and Coop, G and Novembre, J and Kudaravalli, S and Li, J Z and Absher, D and Srinivasan, B S and Barsh, G S and Myers, R M and Feldman, M W and Pritchard, J K},
title = {{Signals of recent positive selection in a worldwide sample of human populations}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {5},
pages = {826--837},
month = may
}
@article{Rose:2010kj,
author = {Rose, Jed E. and Rose, Jed E. and Behm, Frederique M. and Behm, Frederique M. and Drgon, Tomas and Drgon, Tomas and Johnson, Catherine and Johnson, Catherine and Uhl, George R. and Uhl, George R.},
title = {{Personalized Smoking Cessation: Interactions between Nicotine Dose, Dependence and Quit-Success Genotype Score}},
journal = {Molecular Medicine},
year = {2010},
volume = {16},
number = {7-8},
pages = {247--253}
}
@article{SIGURDARDOTTIR:1991tu,
author = {SIGURDARDOTTIR, S and BORSCH, C and GUSTAFSSON, K and andersson, L},
title = {{CLONING AND SEQUENCE-ANALYSIS OF 14 DRB ALLELES OF THE BOVINE MAJOR HISTOCOMPATIBILITY COMPLEX BY USING THE POLYMERASE CHAIN-REACTION}},
journal = {Animal Genetics},
year = {1991},
volume = {22},
number = {3},
pages = {199--209}
}
@article{Hardcastle:2013id,
author = {Hardcastle, Thomas J and Kelly, Krystyna A},
title = {{Empirical Bayesian analysis of paired high-throughput sequencing data with a beta-binomial distribution}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {135}
}
@article{LopezSepulcre:2002bc,
author = {L{\'o}pez-Sepulcre, andr{\'e}s and Kokko, Hanna},
title = {{The role of kin recognition in the evolution of conspecific brood parasitism}},
journal = {Animal Behaviour},
year = {2002},
volume = {64},
number = {2},
pages = {215--222},
month = aug
}
@article{Terakita:2005wl,
author = {Terakita, A},
title = {{The opsins}},
journal = {Genome Biology},
year = {2005},
volume = {6},
number = {3}
}
@article{Meyer:2010eh,
author = {Meyer, Matthias and Meyer, Matthias and Kircher, Martin and Kircher, Martin},
title = {{Illumina sequencing library preparation for highly multiplexed target capture and sequencing.}},
journal = {Cold Spring Harbor protocols},
year = {2010},
volume = {2010},
number = {6},
pages = {pdb.prot5448},
month = jun
}
@article{Reinhold:2002tl,
author = {Reinhold, K and Kurtz, J and Engqvist, L},
title = {{Cryptic male choice: sperm allocation strategies when female quality varies}},
journal = {Journal of Evolutionary Biology},
year = {2002},
volume = {15},
number = {2},
pages = {201--209}
}
@article{Jann:2009eg,
author = {Jann, Oliver C and Jann, Oliver C and King, Annemarie and King, Annemarie and Corrales, Nestor and Corrales, Nestor and anderson, Susan I and anderson, Susan I and Jensen, Kirsty and Jensen, Kirsty and Ait-Ali, Tahar and Ait-Ali, Tahar and Tang, Haizhou and Tang, Haizhou and Wu, Chunhua and Wu, Chunhua and Cockett, Noelle E and Cockett, Noelle E and Archibald, Alan L and Archibald, Alan L and Glass, Elizabeth J and Glass, Elizabeth J},
title = {{Comparative genomics of Toll-like receptor signalling in five species}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {216}
}
@article{Bellin:2009jl,
author = {Bellin, Diana and Ferrarini, Alberto and Chimento, Antonio and Kaiser, Olaf and Levenkova, Natasha and Bouffard, Pascal and Delledonne, Massimo},
title = {{Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {555}
}
@article{andersson:2006jd,
author = {andersson, Malte and Simmons, Leigh W},
title = {{Sexual selection and mate choice}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {6},
pages = {296--302},
month = jun
}
@article{Waples:2007ka,
author = {Waples, R S and Yokota, M},
title = {{Temporal Estimates of Effective Population Size in Species With Overlapping Generations}},
journal = {Genetics},
year = {2006},
volume = {175},
number = {1},
pages = {219--233},
month = oct
}
@article{Frank:2010ix,
author = {Frank, S. A.},
title = {{Demography and the tragedy of the commons}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {1},
pages = {32--39}
}
@article{Hostomska:2009dy,
author = {Hostomsk{\'a}, Jitka and Volfov{\'a}, V{\v e}ra and Mu, Jianbing and Garfield, Mark and Rohou{\v s}ov{\'a}, Iva and Volf, Petr and Valenzuela, Jesus G and Jochim, Ryan C},
title = {{Analysis of salivary transcripts and antigens of the sand fly Phlebotomus arabicus}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {282}
}
@article{Cant:2006jd,
author = {Cant, MA},
title = {{A tale of two theories: parent-offspring conflict and reproductive skew}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
pages = {255--263}
}
@article{Holt:2009ia,
author = {Holt, K E and Teo, Y Y and Li, H and Nair, S and Dougan, G and Wain, J and Parkhill, J},
title = {{Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {16},
pages = {2074--2075},
month = aug
}
@article{Kimelberg:2004vi,
author = {Kimelberg, HK},
title = {{ScienceDirect - Neuroscience : Water homeostasis in the brain: Basic concepts}},
journal = {Neuroscience},
year = {2004}
}
@article{Lifjeld:1991td,
author = {Lifjeld, JT and Slagsvold, T and Lampe, Helene M},
title = {{Low-frequency of extra-pair paternity in pied flycatchers revealed by DNA fingerprinting}},
journal = {Behavioral Ecology and Sociobiology},
year = {1991},
volume = {29},
number = {2},
pages = {95--101}
}
@article{Hodges:2009ik,
author = {Hodges, Emily and Hodges, Emily and Rooks, Michelle and Rooks, Michelle and Xuan, Zhenyu and Xuan, Zhenyu and Bhattacharjee, Arindam and Bhattacharjee, Arindam and Benjamin Gordon, D and Benjamin Gordon, D and Brizuela, Leonardo and Brizuela, Leonardo and Richard McCombie, W and Richard McCombie, W and Hannon, Gregory J and Hannon, Gregory J},
title = {{Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing.}},
journal = {Nature protocols},
year = {2009},
volume = {4},
number = {6},
pages = {960--974}
}
@article{Patterson:2010eh,
author = {Patterson, D J and Cooper, J and Kirk, P M and Pyle, R L and Remsen, D P},
title = {{Names are key to the big new biology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2010},
volume = {25},
number = {12},
pages = {686--691},
month = dec
}
@article{ANDERSON:2012jp,
author = {ANDERSON, KIRK E and ANDERSON, KIRK E and Russell, Jacob A and Russell, Jacob A and Moreau, Corrie S and Moreau, Corrie S and KAUTZ, STEFANIE and KAUTZ, STEFANIE and SULLAM, KAREN E and SULLAM, KAREN E and HU, YI and HU, YI and BASINGER, URSULA and BASINGER, URSULA and MOTT, BRENDON M and MOTT, BRENDON M and BUCK, NORMAN and BUCK, NORMAN and WHEELER, DIANA E and WHEELER, DIANA E},
title = {{Highly similar microbial communities are shared among related and trophically similar ant species}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = jan
}
@article{Chenoweth:2010wr,
author = {Chenoweth, SF and McGuigan, K},
title = {{The Genetic Basis of Sexually-Selected Variation}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2010},
volume = {41},
number = {1}
}
@article{Haynes:2007hw,
author = {Haynes, Kenneth F and McLaughlin, John and Stamper, Shelby and Rucker, Charlene and Webster, Francis X and Czokajlo, Darek and Kirsch, Philipp},
title = {{Pheromone trap for the eastern tent caterpillar moth}},
journal = {Environmental Entomology},
year = {2007},
volume = {36},
number = {5},
pages = {1199--1205}
}
@article{Reed:2007gn,
author = {Reed, D H},
title = {{Selection and the rate of loss of genetic variation: Natural selection and genetic diversity}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {1},
pages = {1--2},
month = may
}
@article{Servin:2004is,
author = {Servin, Alain L},
title = {{Antagonistic activities of lactobacilli and bifidobacteria against microbial pathogens.}},
journal = {FEMS Microbiology Reviews},
year = {2004},
volume = {28},
number = {4},
pages = {405--440},
month = oct
}
@article{Herlyn:2005do,
author = {Herlyn, Holger and Zischler, Hans},
title = {{Sequence evolution, processing, and posttranslational modification of zonadhesin D domains in primates, as inferred from cDNA data}},
journal = {Gene},
year = {2005},
volume = {362},
pages = {85--97},
month = dec
}
@article{Vahed:2006gz,
author = {Vahed, K},
title = {{Larger ejaculate volumes are associated with a lower degree of polyandry across bushcricket taxa}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1599},
pages = {2387--2394},
month = sep
}
@article{Ord:2011en,
author = {Ord, Terry J and Charles, Grace K and Hofer, Rebecca K},
title = {{The Evolution of Alternative Adaptive Strategies for Effective Communication in Noisy Environments}},
journal = {The American Naturalist},
year = {2011},
volume = {177},
number = {1},
pages = {54--64},
month = jan
}
@article{GrosseWilde:2011cu,
author = {Grosse-Wilde, Ewald and Kuebler, Linda S and Bucks, Sascha and Vogel, Heiko and Wicher, Dieter and Hansson, Bill S},
title = {{Antennal transcriptome of Manduca sexta.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {18},
pages = {7449--7454},
month = may
}
@article{Yang:2011jy,
author = {Yang, S Samuel and Yang, S Samuel and Tu, Zheng Jin and Tu, Zheng Jin and Cheung, Foo and Xu, Wayne Wenzhong and Xu, Wayne Wenzhong and Lamb, JoAnn FS and Lamb, JoAnn FS and Jung, Hans-Joachim G and Jung, Hans-Joachim G and Vance, Carroll P and Vance, Carroll P and Gronwald, John W and Gronwald, John W},
title = {{Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {199},
month = apr
}
@article{Bukovetzky:2012jya,
author = {Bukovetzky, Elena and Schwimmer, Hagit and Fares, Fuad and Haim, Abraham},
title = {{Hormones and Behavior}},
journal = {Hormones and Behavior},
year = {2012},
volume = {61},
number = {1},
pages = {84--90},
month = jan
}
@article{Ramm:2007cm,
author = {Ramm, S A and Oliver, P L and Ponting, C P and Stockley, P and Emes, R D},
title = {{Sexual Selection and the Adaptive Evolution of Mammalian Ejaculate Proteins}},
journal = {Molecular Biology and Evolution},
year = {2007},
volume = {25},
number = {1},
pages = {207--219},
month = nov
}
@article{GYLLENSTEN:1994tg,
author = {GYLLENSTEN, U and BERGSTROM, T and BERGSTROM, T and JOSEFSSON, A and JOSEFSSON, A and SUNDVALL, M and SUNDVALL, M and SAVAGE, A and SAVAGE, A and BLUMER, ES and BLUMER, ES and GIRALDO, LH and GIRALDO, LH and SOTO, LH and SOTO, LH and WATKINS, DI and WATKINS, DI},
title = {{THE COTTON-TOP TAMARIN REVISITED - MHC CLASS-I POLYMORPHISM OF WILD TAMARINS, AND POLYMORPHISM AND ALLELIC DIVERSITY OF THE CLASS-II DQA1, DQB1, AND DRB LOCI}},
journal = {Immunogenetics},
year = {1994},
volume = {40},
number = {3},
pages = {167--176}
}
@article{Zuk:2002hx,
author = {Zuk, Marlene and Stoehr, andrew M},
title = {{Immune Defense and Host Life History}},
journal = {The American Naturalist},
year = {2002},
volume = {160},
number = {s4},
pages = {S9--S22},
month = oct
}
@article{Lenton:2009gi,
author = {Lenton, Alison P and Fasolo, Barbara and Todd, Peter M},
title = {{The relationship between number of potential mates and mating skew in humans}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {1},
pages = {55--60},
month = jan
}
@article{Anonymous:ffUPYGak,
title = {{Eureka Genomics Aug 2009}},
year = {2009},
pages = {1--23},
month = aug
}
@article{GarcaGonzlez:2008ep,
journal = {Evolution},
year = {2008},
volume = {62},
number = {7},
month = jul
}
@article{Mayer:1992vv,
author = {Mayer, WE and OHUigin, C and ZALESKARUTCZYNSKA, Z and ZALESKARUTCZYNSKA, Z and Klein, J},
title = {{TRANSSPECIES ORIGIN OF MHC-DRB POLYMORPHISM IN THE CHIMPANZEE}},
journal = {Immunogenetics},
year = {1992},
volume = {37},
number = {1},
pages = {12--23}
}
@article{Punta:2011ko,
author = {Punta, M and Punta, M and Coggill, P C and Coggill, P C and Eberhardt, R Y and Eberhardt, R Y and Mistry, J and Mistry, J and Tate, J and Tate, J and Boursnell, C and Boursnell, C and Pang, N and Pang, N and Forslund, K and Forslund, K and Ceric, G and Ceric, G and Clements, J and Clements, J and Heger, A and Heger, A and Holm, L and Holm, L and Sonnhammer, E L L and Sonnhammer, E L L and Eddy, S R and Bateman, A and Bateman, A and Finn, R D and Finn, R D},
title = {{The Pfam protein families database}},
journal = {Nucleic Acids Research},
year = {2011},
volume = {40},
number = {D1},
pages = {D290--D301},
month = dec
}
@article{Anonymous:nJBpuX6j,
author = {Chew, R M and Chew, A E},
title = {{The primary productivity of a desert-shrub (Larrea tridentata) community}},
journal = {Ecological Monographs},
year = {1965},
volume = {35},
number = {4},
pages = {355}
}
@article{Karlsson:2010jd,
author = {Karlsson, Anna-Carin and Karlsson, Anna-Carin and Jensen, Per and Jensen, Per and Elgland, Mathias and Elgland, Mathias and Laur, Katriann and Laur, Katriann and Fyrner, Timmy and Fyrner, Timmy and Konradsson, Peter and Konradsson, Peter and Laska, Matthias and Laska, Matthias},
title = {{Red junglefowl have individual body odors.}},
journal = {The Journal of experimental biology},
year = {2010},
volume = {213},
number = {Pt 10},
pages = {1619--1624},
month = may
}
@article{Best:2008ec,
author = {Best, A and White, A and Boots, M},
title = {{Maintenance of host variation in tolerance to pathogens and parasites}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {52},
pages = {20786--20791},
month = dec
}
@article{Hopkins:2010ba,
author = {Hopkins, Bradley W and Hopkins, Bradley W and Longnecker, Michael T and Longnecker, Michael T and Pietrantonio, Patricia V and Pietrantonio, Patricia V},
title = {{Transcriptional overexpression of CYP6B8/CYP6B28 and CYP6B9 is a mechanism associated with cypermethrin survivorship in field-collected Helicoverpa zea (Lepidoptera: Noctuidae) moths}},
journal = {Pest management science},
year = {2010},
volume = {67},
number = {1},
pages = {21--25},
month = oct
}
@article{Cipollini:1997tm,
author = {Cipollini, ML and Levey, DJ},
title = {{Secondary metabolites of fleshy vertebrate-dispersed fruits: Adaptive hypotheses and implications for seed dispersal}},
journal = {The American Naturalist},
year = {1997},
volume = {150},
number = {3},
pages = {346--372}
}
@article{Anonymous:FrW9lWCA,
title = {{RACER: Rapid and Accurate Correction of Errors in Reads}},
year = {2013},
pages = {1--4},
month = apr
}
@article{Calisi:2007cz,
author = {Calisi, Rebecca M and Hews, Diana K},
title = {{Steroid correlates of multiple color traits in the spiny lizard, Sceloporus pyrocephalus}},
journal = {Journal of Comparative Physiology B-Biochemical Systemic and Environmental Physiology},
year = {2007},
volume = {177},
number = {6},
pages = {641--654},
month = may
}
@article{Boisvert:2010dz,
author = {Boisvert, S{\'e}bastien and Laviolette, Fran{\c c}ois and Corbeil, Jacques},
title = {{Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies.}},
journal = {Journal of computational biology : a journal of computational molecular cell biology},
year = {2010},
volume = {17},
number = {11},
pages = {1519--1533},
month = nov
}
@article{Szulkin:2010dx,
author = {Szulkin, Marta and Szulkin, Marta and Bierne, Nicolas and Bierne, Nicolas and David, Patrice and David, Patrice},
title = {{Heterozygosity-fitness correlations: a time for reappraisal.}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {5},
pages = {1202--1217},
month = may
}
@article{Cant:2009dr,
author = {Cant, Michael A and Johnstone, Rufus A},
title = {{How Threats Influence the Evolutionary Resolution of Within-Group Conflict}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {6},
pages = {759--771},
month = jun
}
@article{Canestrari:2005ds,
author = {Canestrari, Daniela and Marcos, Jos and Baglione, Vittorio},
title = {{Effect of parentage and relatedness on the individual contribution to cooperative chick care in carrion crows Corvus corone corone}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {57},
number = {5},
pages = {422--428},
month = dec
}
@article{Spottiswoode:2004ep,
author = {Spottiswoode, C},
title = {{Extrapair paternity, migration, and breeding synchrony in birds}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {1},
pages = {41--57},
month = jan
}
@article{Anonymous:IrTgEriZ,
author = {al-Kahtani, Mohammed A and Zuleta, Carlos and Caviedes-Vidal, Enrique and Garland, Theodore},
title = {{Kidney mass and relative medullary thickness of rodents in relation to habitat, body size, and phylogeny.}},
journal = {Physiological and Biochemical Zoology},
year = {2004},
volume = {77},
number = {3},
pages = {346--365},
month = may
}
@article{Cordell:2009jb,
author = {Cordell, Heather J},
title = {{Detecting gene{\textendash}gene interactions that underlie human diseases}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {6},
pages = {392--404},
month = jun
}
@article{Anisimova:2007ct,
author = {Anisimova, M and Liberles, D A},
title = {{The quest for natural selection in the age of comparative genomics}},
journal = {Heredity},
year = {2007},
volume = {99},
number = {6},
pages = {567--579},
month = sep
}
@article{Carvalho:2013esa,
author = {Carvalho, Renato A and Carvalho, Renato A and Omoto, Celso and Omoto, Celso and Field, Linda M and Field, Linda M and Williamson, Martin S and Williamson, Martin S and Bass, Chris and Bass, Chris},
title = {{Investigating the Molecular Mechanisms of Organophosphate and Pyrethroid Resistance in the Fall Armyworm Spodoptera frugiperda}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {4},
pages = {e62268},
month = apr
}
@article{Genuis:2004fr,
author = {Genuis, Stephen J and Genuis, Shelagh K},
title = {{Managing the sexually transmitted disease pandemic: A time for reevaluation}},
journal = {American Journal of Obstetrics and Gynecology},
year = {2004},
volume = {191},
number = {4},
pages = {1103--1112},
month = oct
}
@article{Alneberg:2013ug,
author = {Alneberg, Johannes and Bjarnason, Brynjar Smari and \textit{de Bruijn}, Ino and Schirmer, Melanie and Quick, Joshua and Ijaz, Umer Z and Loman, Nicholas J and andersson, anders F and Quince, Christopher},
title = {{CONCOCT: Clustering cONtigs on COverage and ComposiTion}},
journal = {arXiv.org},
year = {2013},
eprint = {1312.4038v1},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = dec
}
@article{Slansky:2008uz,
author = {Slansky, Frank and Kaufman, Phillip E and Bailey, Mark},
title = {{FIRST RECORD OF CUTEREBRA FONTINELLA (DIPTERA: OESTRIDAE) LARVAE INFESTING A FLORIDA RAT (RODENTIA: MURIDAE)}},
journal = {Florida Entomologist},
year = {2008},
volume = {91},
number = {4},
pages = {706--708}
}
@article{Krzywinski:2013ca,
author = {Krzywinski, Martin and Altman, Naomi},
title = {{Points of significance: Power and sample size}},
journal = {Nature Methods},
year = {2013},
volume = {10},
number = {12},
pages = {1139--1140},
month = nov
}
@article{GomezAlamillo:2010kz,
author = {Gomez-Alamillo, C and Benito-Hernandez, A and Ramos-Barron, M A and Ag{\"u}eros, C and Rodrigo, E and Ruiz, J C and Sanchez, M and San Cosme, L and Arias, M},
title = {{Analysis of Urinary Gene Expression of Epithelial-Mesenchymal Transition Markers in Kidney Transplant Recipients}},
journal = {Transplantation Proceedings},
year = {2010},
volume = {42},
number = {8},
pages = {2886--2888},
month = oct
}
@article{BOS:2011er,
author = {BOS, N and BOS, N and LEF{\`{E}}VRE, T and LEF{\`{E}}VRE, T and JENSEN, A B and JENSEN, A B and D'Ettorre, P},
title = {{Sick ants become unsociable.}},
journal = {Journal of Evolutionary Biology},
year = {2011},
month = nov
}
@article{Queller:2011th,
author = {Queller, D C},
title = {{Expanded social fitness and Hamilton's rule for kin, kith, and kind}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2011},
volume = {108},
number = {Supplement 2},
pages = {10792}
}
@article{Aron:2001ui,
author = {Aron, S},
title = {{Reproductive strategy: an essential component in the success of incipient colonies of the invasive Argentine ant}},
journal = {Insectes Sociaux},
year = {2001},
volume = {48},
number = {1},
pages = {25--27}
}
@article{Wilburn:2012cl,
author = {Wilburn, Damien B and Wilburn, Damien B and Bowen, Kathleen E and Bowen, Kathleen E and Gregg, Ronald G and Gregg, Ronald G and Cai, Jian and Cai, Jian and Feldhoff, Pamela W and Feldhoff, Pamela W and Houck, Lynne D and Houck, Lynne D and Feldhoff, Richard C and Feldhoff, Richard C},
title = {{PROTEOMIC AND UTR ANALYSES OF A RAPIDLY EVOLVING HYPERVARIABLE FAMILY OF VERTEBRATE PHEROMONES}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = feb
}
@article{Strope:2009ws,
author = {Strope, Cory},
title = {{iSGv2_revision}},
year = {2009},
pages = {1--39},
month = jul
}
@article{Broquet:2009id,
author = {Broquet, Thomas and Yearsley, Jonathan and Hirzel, Alexandre H and Goudet, J{\'e}r{\^o}me and Perrin, Nicolas},
title = {{Inferring recent migration rates from individual genotypes}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {6},
pages = {1048--1060},
month = mar
}
@article{Presgraves:2009fc,
author = {Presgraves, Daven C and Yi, Soojin V},
title = {{Doubts about complex speciation between humans and chimpanzees}},
journal = {Trends In Ecology {\&} Evolution},
year = {2009},
volume = {24},
number = {10},
pages = {533--540},
month = oct
}
@article{Suzuki:2008wh,
author = {Suzuki, Yoshiyuki},
title = {{False-positive results obtained from the branch-site test of positive selection}},
journal = {Genes {\&} genetic systems},
year = {2008},
volume = {83},
number = {4},
pages = {331--338},
month = aug
}
@article{Watts:2008tc,
author = {Watts, Bryan D and Wilson, Michael D and Smith, Fletcher M and Paxton, Barton J and Williams, J Bill},
title = {{Breeding range extension of the Coastal Plain Swamp Sparrow}},
journal = {Wilson Journal of Ornithology},
year = {2008},
volume = {120},
number = {2},
pages = {393--395}
}
@article{Gioeli:1971vg,
author = {Gioeli, R P and DeLuca, C},
title = {{Modification of the use of the pipette filler for reducing the hazards of contamination}},
journal = {Applied microbiology},
year = {1971},
volume = {22},
number = {5},
pages = {946--947},
month = nov
}
@article{Maklakov:2009fi,
author = {Maklakov, Alexei A and Arnqvist, Goran},
title = {{Testing for Direct and Indirect Effects of Mate Choice by Manipulating Female Choosiness}},
journal = {Current Biology},
year = {2009},
volume = {19},
number = {22},
pages = {1903--1906},
month = dec
}
@article{Brenet:2011dq,
author = {Brenet, Fabienne and Moh, Michelle and Funk, Patricia and Feierstein, Erika and Viale, Agnes J and Socci, Nicholas D and Scandura, Joseph M},
title = {{DNA Methylation of the First Exon Is Tightly Linked to Transcriptional Silencing}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {1},
pages = {e14524},
month = jan
}
@article{Nozawa:2009bx,
author = {Nozawa, M and Suzuki, Y and NEI, M},
title = {{Response to Yang et al.: Problems with Bayesian methods of detecting positive selection at the DNA sequence level}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {36},
pages = {E96--E96},
month = sep
}
@article{Rodriguez:2013im,
author = {Rodriguez, JP Perea},
title = {{Differences in Placentophagia in Relation to Reproductive Status in the California Mouse (\textit{Peromyscus} \textit{californicus})}},
journal = {Developmental {\ldots}},
year = {2013}
}
@article{vanPuyvelde:2009hn,
author = {van Puyvelde, K and van Geert, A and Triest, L},
title = {{atetra, a new software program to analyse tetraploid microsatellite data: comparison with tetra and tetrasat}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {10},
number = {2},
pages = {331--334},
month = mar
}
@article{Poiani:2002bm,
author = {Poiani, A and Gwozdz, J},
title = {{Cloacal microorganisms and mating systems of four Australian bird species}},
journal = {Emu},
year = {2002},
volume = {102},
number = {3},
pages = {291}
}
@article{Fletcher:2009ed,
author = {Fletcher, W and Yang, Z},
title = {{INDELible: A Flexible Simulator of Biological Sequence Evolution}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {8},
pages = {1879--1888},
month = jul
}
@article{Miller:2010gxa,
author = {Miller, Jason R and Koren, Sergey and Sutton, Granger},
title = {{Assembly algorithms for next-generation sequencing data}},
journal = {Genomics},
year = {2010},
volume = {95},
number = {6},
pages = {315--327},
month = jun
}
@article{Lipshitz:2009ca,
author = {Lipshitz, Howard D},
title = {{Follow the mRNA: a new model for Bicoid gradient formation}},
journal = {Nature Reviews Molecular Cell Biology},
year = {2009},
volume = {10},
number = {8},
pages = {509--512},
month = aug
}
@article{Prince:2002wg,
author = {Prince, K L and Prince, K L and Glenn, T C and Glenn, T C and Dewey, M J and Dewey, M J},
title = {{Cross-species amplification among peromyscines of new microsatellite DNA loci from the oldfield mouse (\textit{\textit{Peromyscus} polionotus} subgriseus)}},
journal = {Molecular Ecology Notes},
year = {2002},
volume = {2},
number = {2},
pages = {133--136},
month = jun
}
@article{Chirhart:2005kj,
author = {Chirhart, Scott E and Honeycutt, Rodney L and Greenbaum, Ira F},
title = {{Microsatellite variation and evolution in the \textit{Peromyscus} \textit{maniculatus} species group}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2005},
volume = {34},
number = {2},
pages = {408--415},
month = feb
}
@article{Schully:2006bh,
author = {Schully, Sheri Dixon and Hellberg, Michael E},
title = {{Positive Selection on Nucleotide Substitutions and Indels in Accessory Gland Proteins of the \textit{Drosophila} \textit{pseudoobscura} Subgroup}},
journal = {Journal of Molecular Evolution},
year = {2006},
volume = {62},
number = {6},
pages = {793--802},
month = apr
}
@article{Dondero:2011jd,
author = {Dondero, Francesco and Dondero, Francesco and Banni, Mohamed and Banni, Mohamed and Negri, Alessandro and Negri, Alessandro and Boatti, Lara and Boatti, Lara and Dagnino, Alessandro and Dagnino, Alessandro and Viarengo, Aldo and Viarengo, Aldo},
title = {{Interactions of a pesticide / heavy metal mixture in marine bivalves: a transcriptomic assessment.}},
journal = {BMC Genomics},
year = {2011},
volume = {12},
number = {1},
pages = {195},
month = apr
}
@article{Sanchez:2011im,
author = {S{\'a}nchez, V{\'\i}ctor and S{\'a}nchez, V{\'\i}ctor and Hern{\'a}ndez-Ba{\~n}os, Blanca Estela and Hern{\'a}ndez-Ba{\~n}os, Blanca Estela and Cordero, Carlos and Cordero, Carlos},
title = {{The Evolution of a Female Genital Trait Widely Distributed in the Lepidoptera: Comparative Evidence for an Effect of Sexual Coevolution}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {8},
pages = {e22642},
month = aug
}
@article{Grassly:2008ek,
author = {Grassly, Nicholas C and Fraser, Christophe},
title = {{Mathematical models of infectious disease transmission}},
journal = {Nature Reviews Microbiology},
year = {2008},
month = may
}
@article{Anonymous:2013koa,
author = {Lajoie, Marc J and Rovner, Alexis J and Goodman, Daniel B and Aerni, Hans-Rudolf and Haimovich, Adrian D and Kuznetsov, Gleb and Mercer, Jaron A and Wang, Harris H and Carr, Peter A and Mosberg, Joshua A and Rohland, Nadin and Schultz, Peter G and Jacobson, Joseph M and Rinehart, Jesse and Church, George M and Isaacs, Farren J},
title = {{Genomically Recoded Organisms Expand Biological Functions}},
journal = {Science},
year = {2013},
volume = {342},
number = {6156},
pages = {357--360},
month = oct
}
@article{Furey:2012haa,
author = {Furey, Terrence S},
title = {{ChIP{\textendash}seq and beyond: new and improved methodologies to detect and characterize protein{\textendash}DNA interactions}},
journal = {Nature Reviews Genetics},
year = {2012},
volume = {13},
number = {12},
pages = {840--852},
month = oct
}
@article{andres:2009bu,
author = {andres, A M and Hubisz, M J and Indap, A and Torgerson, D G and Degenhardt, J D and Boyko, A R and Gutenkunst, R N and White, T J and Green, E D and Bustamante, C D and Clark, A G and Nielsen, R},
title = {{Targets of Balancing Selection in the Human Genome}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {12},
pages = {2755--2764},
month = nov
}
@article{Scholes:2009gr,
author = {Scholes, D R and Suarez, A V},
title = {{Speed-versus-accuracy trade-offs during nest relocation in Argentine ants (Linepithema humile) and odorous house ants (Tapinoma sessile)}},
journal = {Insectes Sociaux},
year = {2009},
volume = {56},
number = {4},
pages = {413--418},
month = aug
}
@article{Cameron:2009bn,
author = {Cameron, Elissa Z and Dalerum, Fredrik},
title = {{A Trivers-Willard Effect in Contemporary Humans: Male-Biased Sex Ratios among Billionaires}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {1},
pages = {e4195},
month = jan
}
@article{GUSTAFSSON:1993up,
author = {GUSTAFSSON, K and RASK, L and andersson, L},
title = {{STRUCTURE OF PORCINE MHC CLASS-II DRB GENES}},
journal = {Immunogenetics},
year = {1993},
volume = {37},
number = {4},
pages = {312--313}
}
@article{HANSEN:1950vu,
author = {HANSEN, MF},
title = {{A NEW DILEPIDID TAPEWORM AND NOTES ON OTHER TAPEWORMS OF RODENTS}},
journal = {American Midland Naturalist},
year = {1950},
volume = {43},
number = {2},
pages = {471--479}
}
@article{Akey:2009kz,
author = {Akey, J M},
title = {{Constructing genomic maps of positive selection in humans: Where do we go from here?}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {5},
pages = {711--722},
month = may
}
@article{OConnell:2010km,
author = {O'Connell, Mary J and Loughran, Noeleen B and Walsh, Thomas A and Donoghue, Mark T A and Schmid, Karl J and Spillane, Charles},
title = {{A phylogenetic approach to test for evidence of parental conflict or gene duplications associated with protein-encoding imprinted orthologous genes in placental mammals}},
journal = {Mammalian Genome},
year = {2010},
volume = {21},
number = {9-10},
pages = {486--498},
month = oct
}
@article{Thomson:2010bz,
author = {Thomson, Robert C and Shaffer, H Bradley},
title = {{Rapid progress on the vertebrate tree of life}},
journal = {BMC biology},
year = {2010},
volume = {8},
number = {1},
pages = {19}
}
@article{Weinstock:2006kq,
author = {Weinstock, George M and Robinson, Gene E and Gibbs, Richard A and Worley, Kim C and Evans, Jay D and Maleszka, Ryszard and Robertson, Hugh M and Weaver, Daniel B and Beye, Martin and Bork, Peer and Elsik, Christine G and Hartfelder, Klaus and Hunt, Greg J and Zdobnov, Evgeny M and Amdam, Gro V and Bitondi, Mrcia M G and Collins, Anita M and Cristino, Alexandre S and Michael, H and Lattorff, G and Lobo, Carlos H and Moritz, Robin F A and Nunes, Francis M F and Page, Robert E and Sim{\~o}es, Zil L P and Wheeler, Diana and Carninci, Piero and Fukuda, Shiro and Hayashizaki, Yoshihide and Kai, Chikatoshi and Kawai, Jun and Sakazume, Naoko and Sasaki, Daisuke and Tagami, Michihira and Albert, Stefan and Baggerman, Geert and Beggs, Kyle T and Bloch, Guy and Cazzamali, Giuseppe and Cohen, Mira and Drapeau, Mark David and Eisenhardt, Dorothea and Emore, Christine and Ewing, Michael A and Fahrbach, Susan E and Foret, Sylvain and Grimmelikhuijzen, Cornelis J P and Hauser, Frank and Hummon, Amanda B and Huybrechts, Jurgen and Jones, andrew K and Kadowaki, Tatsuhiko and Kaplan, Noam and Kucharski, Robert and Leboulle, Gerard and Linial, Michal and Littleton, J Troy and Mercer, Alison R and Richmond, Timothy A and RodriguezZas, Sandra L and Rubin, Elad B and Sattelle, David B and Schlipalius, David and Schoofs, Liliane and Shemesh, Yair and Sweedler, Jonathan V and Velarde, Rodrigo and Verleyen, Peter and Vierstraete, Evy and Williamson, Michael R and Ament, Seth A and Brown, Susan J and Corona, Miguel and Dearden, Peter K and Dunn, W Augustine and Elekonich, Michelle M and Fujiyuki, Tomoko and Gattermeier, Irene and Gempe, Tanja and Hasselmann, Martin and Kage, Eriko and Kamikouchi, Azusa and Kubo, Takeo and Kunieda, Takekazu and Lorenzen, Marce and Milshina, Natalia V and Morioka, Mizue and Ohashi, Kazuaki and Overbeek, Ross and Ross, Christian A and Schioett, Morten and Shippy, Teresa and Takeuchi, Hideaki and Toth, Amy L and Willis, Judith H and Wilson, Megan J and Gordon, Karl H J and Letunic, Ivica and Hackett, Kevin and Peterson, Jane and Felsenfeld, Adam and Guyer, Mark and Solignac, Michel and Agarwala, Richa and Cornuet, Jean-Marie and Monnerot, Monique and Mougel, Florence and Reese, Justin T and Vautrin, Dominique and Gillespie, Joseph J and Cannone, Jamie J and Gutell, Robin R and Johnston, J Spencer and Eisen, Michael B and Iyer, Venky N and Iyer, Vivek and Kosarev, Peter and Mackey, Aaron J and Solovyev, Victor and Souvorov, Alexandre and Aronstein, Katherine A and Bilikova, Katarina and Chen, Yan Ping and Clark, andrew G and Decanini, Laura I and Gelbart, William M and Hetru, Charles and Hultmark, Dan and Imler, Jean-Luc and Jiang, Haobo and Kanost, Michael and Kimura, Kiyoshi and Lazzaro, Brian P and Lopez, Dawn L and Simuth, Jozef and Thompson, Graham J and Zou, Zhen and de Jong, Pieter and Sodergren, Erica and Cs{\H{u}}r{\"o}s, Mikl{\'o}s and Milosavljevic, Aleksandar and Osoegawa, Kazutoyo and Richards, Stephen and Shu, Chung-Li and Duret, Laurent and Elhaik, Eran and Graur, Dan and Anzola, Juan M and Campbell, Kathryn S and Childs, Kevin L and Collinge, Derek and Crosby, Madeline A and Dickens, C Michael and Gramates, L Sian and Grozinger, Christina M and Jones, Peter L and Jorda, Mireia and Ling, Xu and Matthews, Beverly B and Miller, Jonathan and Mizzen, Craig and Peinado, Miguel A and Reid, Jeffrey G and Russo, Susan M and Schroeder, andrew J and St Pierre, Susan E and Wang, Ying and Zhou, Pinglei and Jiang, Huaiyang and Kitts, Paul and Ruef, Barbara and Venkatraman, Anand Zhang, Lan and Aquino-Perez, Gildardo and Whitfield, Charles W and Behura, Susanta K and Berlocher, Stewart H and Sheppard, Walter S and Smith, Deborah R and Suarez, andrew V and Tsutsui, Neil D and Wei, Xuehong and Wheeler, David and Havlak, Paul and Li, Bingshan and Liu, Yue and Jolivet, Angela and Lee, Sandra and Nazareth, Lynne V and Pu, Ling-Ling and Thorn, Rachel and Stolc, Viktor and Newman, Thomas and Samanta, Manoj and Tongprasit, Waraporn A and Claudianos, Charles and Berenbaum, May R and Biswas, Sunita and de Graaf, Dirk C and Feyereisen, Rene and Johnson, Reed M and Oakeshott, John G and Ranson, Hilary and Schuler, Mary A and Muzny, Donna and Chacko, Joseph and Davis, Clay and Dinh, Huyen and Gill, Rachel and Hernandez, Judith and Hines, Sandra and Hume, Jennifer and Jackson, LaRonda and Kovar, Christie and Lewis, Lora and Miner, George and Morgan, Margaret and Nguyen, Ngoc and Okwuonu, Geoffrey and Paul, Heidi and Santibanez, Jireh and Savery, Glenford and Svatek, Amanda and Villasana, Donna and Wright, Rita},
title = {{Insights into social insects from the genome of the honeybee Apis mellifera}},
journal = {Nature},
year = {2006},
volume = {443},
number = {7114},
pages = {931--949},
month = oct
}
@article{Manske:2009ew,
author = {Manske, H M and Kwiatkowski, D P},
title = {{SNP-o-matic}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {18},
pages = {2434--2435},
month = aug
}
@article{Fitzgerald:1988vg,
author = {Fitzgerald, T D and Casey, Tim and Joos, Barbara},
title = {{Daily foraging schedule of field colonies of the eastern tent caterpillar \textit{Malacosoma} \textit{americanum}}},
journal = {Oecologia},
year = {1988},
volume = {76},
number = {4},
pages = {574--578}
}
@article{Campbell:2008vg,
author = {Campbell, Polly},
title = {{The relationship between roosting ecology and degree of polygyny in harem-forming bats: perspectives from Cynopterus}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {6},
pages = {1351--1359},
month = dec
}
@article{Storz:2007hh,
author = {Storz, Jay F and Sabatino, Stephen J and Hoffmann, Federico G and Gering, Eben J and Moriyama, Hideaki and Ferrand, Nuno and Monteiro, Bruno and Nachman, Michael W},
title = {{The Molecular Basis of High-Altitude Adaptation in Deer Mice}},
journal = {PLOS Genetics},
year = {2007},
volume = {3},
number = {3},
pages = {e45}
}
@article{Simpson:2010fd,
author = {Simpson, J T and Durbin, R},
title = {{Efficient construction of an assembly string graph using the FM-index}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {12},
pages = {i367--i373},
month = jun
}
@article{Schluens:2009ek,
author = {SCHL{\"U}NS, E A and Wegener, B J and SCHL{\"U}NS, H and Azuma, N and Robson, S K A and Crozier, R H},
title = {{Breeding system, colony and population structure in the weaver ant Oecophylla smaragdina}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {1},
pages = {156--167},
month = jan
}
@article{Anonymous:_ZJ9fgOD,
title = {{ape}},
year = {2011},
pages = {1--211},
month = mar
}
@article{Progar:2010hc,
author = {Progar, R A and Rinella, M J and Fekedulegn, D and Butler, L},
title = {{Nuclear polyhedrosis virus as a biological control agent for \textit{Malacosoma} \textit{americanum} (Lepidoptera: Lasiocampidae)}},
journal = {Journal of Applied Entomology},
year = {2010},
volume = {134},
number = {8},
pages = {641--646}
}
@article{Fowler:2009hp,
author = {Fowler, J H and Dawes, C T and Christakis, N A},
title = {{From the Cover: Model of genetic variation in human social networks}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {6},
pages = {1720--1724},
month = feb
}
@article{Lu:2012bi,
author = {Lu, S and Zong, C and Fan, W and Yang, M and Li, J and Chapman, A R and Zhu, P and Hu, X and Xu, L and Yan, L and Bai, F and Qiao, J and Tang, F and Li, R and Xie, X S},
title = {{Probing Meiotic Recombination and Aneuploidy of Single Sperm Cells by Whole-Genome Sequencing}},
journal = {Science (New York, NY)},
year = {2012},
volume = {338},
number = {6114},
pages = {1627--1630},
month = dec
}
@article{Nguyen:2009ed,
author = {Nguyen, Van Hoa and Lavenier, Dominique},
title = {{PLAST: parallel local alignment search tool for database comparison}},
journal = {BMC Bioinformatics},
year = {2009},
volume = {10},
number = {1},
pages = {329}
}
@article{Laayouni:2009fx,
author = {Laayouni, H and Bertranpetit, J},
title = {{From the detection of population structure to the reconstruction of population history: the historical reading of the human genome}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {5},
pages = {362--363},
month = jul
}
@article{Lemaitre:2009gp,
author = {Lema{\^\i}tre, J-F and Ramm, S A and Barton, R A and Stockley, P},
title = {{Sperm competition and brain size evolution in mammals}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {11},
pages = {2215--2221},
month = nov
}
@article{Coltman:1999vm,
author = {Coltman, DW and Smith, JA and BANCROFT, DR and Pilkington, J and MacColl, ADC and Clutton-Brock, TH and Pemberton, JM},
title = {{Density-dependent variation in lifetime breeding success and natural and sexual selection in Soay rams}},
journal = {The American Naturalist},
year = {1999},
volume = {154},
number = {6},
pages = {730--746}
}
@article{Lackey:1991ty,
author = {Lackey, JA},
title = {{Chaetodipus spinatus}},
journal = {Mammalian Species},
year = {1991},
pages = {1--4}
}
@article{Barrett:2008do,
author = {Barrett, R D H and Rogers, S M and Schluter, D},
title = {{Natural Selection on a Major Armor Gene in Threespine Stickleback}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5899},
pages = {255--257},
month = oct
}
@article{Charlesworth:1993vy,
author = {Charlesworth, B and MORGAN, MT and CHARLESWORTH, D},
title = {{THE EFFECT OF DELETERIOUS MUTATIONS ON NEUTRAL MOLECULAR VARIATION}},
journal = {Genetics},
year = {1993},
volume = {134},
number = {4},
pages = {1289--1303}
}
@article{Anthes:2006es,
author = {Anthes, Nils and Putz, Annika and Michiels, Nico K},
title = {{Sex role preferences, gender conflict and sperm trading in simultaneous hermaphrodites: a new framework}},
journal = {Animal Behaviour},
year = {2006},
volume = {72},
number = {1},
pages = {1--12},
month = jul
}
@article{Kokko:1998uy,
author = {Kokko, H},
title = {{Should advertising parental care be honest?}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1998},
volume = {265},
number = {1408},
pages = {1871--1878}
}
@article{Lunn:2004iv,
author = {Lunn, Mary and Sloan, William T and Curtis, Thomas P},
title = {{Estimating bacterial diversity from clone libraries with flat rank abundance distributions}},
journal = {Environmental Microbiology},
year = {2004},
volume = {6},
number = {10},
pages = {1081--1085},
month = oct
}
@article{Stephens:2005tq,
author = {Stephens, PA and Stephens, PA and Russell, AF and Young, AJ and Young, AJ and Sutherland, WJ and Clutton-Brock, TH},
title = {{Dispersal, eviction, and conflict in meerkats (Suricata suricatta): An evolutionarily stable strategy model}},
journal = {The American Naturalist},
year = {2005},
volume = {165},
number = {1},
pages = {120--135}
}
@article{Lei:2009jc,
author = {Lei, Shu-Feng and Yang, Tie-Lin and Tan, Li-Jun and Chen, Xiang-Ding and Guo, Yan and Guo, Yan-Fang and Zhang, Liang and Liu, Xiao-Gang and Yan, Han and Pan, Feng and Zhang, Zhi-Xin and Peng, Yu-Mei and Zhou, Qi and He, Li-Na and Zhu, Xue-Zhen and Cheng, Jing and Liu, Yao-Zhong and Papasian, Christopher J and Deng, Hong-Wen},
title = {{Genome-wide association scan for stature in Chinese: evidence for ethnic specific loci}},
journal = {Human Genetics},
year = {2008},
volume = {125},
number = {1},
pages = {1--9},
month = nov
}
@article{Woodruff:2010fc,
author = {Woodruff, Julie A. and Lacey, Eileen A and Bentley, George},
title = {{Contrasting Fecal Corticosterone Metabolite Levels in Captive and Free-Living Colonial Tuco-Tucos (\emph{\textit{Ctenomys} \textit{sociabilis}})}},
journal = {Journal of Experimental Zoology Part A-Ecological Genetics and Physiology},
year = {2010},
volume = {313A},
number = {8},
pages = {498--507}
}
@article{Grigoryev:2008fd,
author = {Grigoryev, D N and Liu, M and Hassoun, H T and Cheadle, C and Barnes, K C and Rabb, H},
title = {{The Local and Systemic Inflammatory Transcriptome after Acute Kidney Injury}},
journal = {Journal of the American Society of Nephrology},
year = {2008},
volume = {19},
number = {3},
pages = {547--558},
month = jan
}
@article{Tull:2007va,
author = {Tull, John C and Sears, Michael W},
title = {{Moistened seeds increase rodent trap success}},
journal = {Western North American Naturalist},
year = {2007},
volume = {67},
number = {4},
pages = {520--523}
}
@article{Fisher:2010ti,
author = {Fisher, DO and Fisher, DO and Nuske, S and Nuske, S and Green, S and Green, S and Seddon, JM and Seddon, JM and McDonald, B and McDonald, B},
title = {{The evolution of sociality in small, carnivorous marsupials: the lek hypothesis revisited}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
pages = {1--13}
}
@article{Schneider:2008kd,
author = {Schneider, J M and Bilde, T},
title = {{Benefits of cooperation with genetic kin in a subsocial spider}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {31},
pages = {10843--10846},
month = aug
}
@article{Turner:2008dx,
author = {Turner, Leslie M and Chuong, Edward B and Hoekstra, Hopi E},
title = {{Comparative analysis of testis protein evolution in rodents.}},
journal = {Genetics},
year = {2008},
volume = {179},
number = {4},
pages = {2075--2089},
month = aug
}
@article{Anonymous:JMkooLIu,
title = {{The rate of human mutation}},
year = {2012},
pages = {1--2},
month = aug
}
@article{Zerbino:2011uh,
author = {Zerbino, D},
title = {{Velvet Manual}},
year = {2011},
pages = {1--21},
month = mar
}
@article{Faaborg:1995tb,
author = {Faaborg, J and Faaborg, J and Parker, PG and Delay, L and Delay, L and deVries, T and deVries, T and Bednarz, JC and Bednarz, JC and Paz, S Maria and Paz, S Maria and Naranjo, J and Naranjo, J and Waite, T A and Waite, T A},
title = {{Confirmation of cooperative polyandry in the Galapagos Hawk (\emph{\textit{Buteo galapagoensis}})}},
journal = {Behavioral Ecology and Sociobiology},
year = {1995},
volume = {36},
number = {2},
pages = {83--90}
}
@article{Mcvean:2002ws,
author = {Mcvean, Gil and Awadalla, Philip and Fearnhead, Paul and Fearnhead, Paul},
title = {{A coalescent-based method for detecting and estimating recombination from gene sequences.}},
journal = {Genetics},
year = {2002},
volume = {160},
number = {3},
pages = {1231--1241},
month = mar
}
@article{Griffith:2007ve,
author = {Griffith, Simon C},
title = {{The evolution of infidelity in socially monogamous passerines: Neglected components of direct and indirect selection}},
journal = {The American Naturalist},
year = {2007},
volume = {169},
number = {2},
pages = {274--281}
}
@article{Anonymous:2007tu,
title = {{Is bigger better? Water balance in the polymorphic desert harvester ant}},
year = {2007},
pages = {1--10},
month = sep
}
@article{Peng:2012cp,
author = {Peng, Y and Leung, H C M and Yiu, S M and Chin, F Y L},
title = {{IDBA-UD: a \textit{de novo} assembler for single-cell and metagenomic sequencing data with highly uneven depth}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {11},
pages = {1420--1428},
month = may
}
@article{Aitken:2004bt,
author = {Aitken, Nicola and Smith, Steven and Schwarz, Carsten and Morin, Phillip A},
title = {{Single nucleotide polymorphism (SNP) discovery in mammals: a targeted-gene approach}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {6},
pages = {1423--1431},
month = apr
}
@article{DelbarcoTrillo:2004fy,
author = {delBarco-Trillo, Javier and Ferkin, Michael H},
title = {{Male mammals respond to a risk of sperm competition conveyed by odours of conspecific males}},
journal = {Nature},
year = {2004},
volume = {431},
number = {7007},
pages = {446--449},
month = sep
}
@article{Arnqvist:2005vv,
author = {Arnqvist, G and KIRKPATRICK, M},
title = {{The evolution of infidelity in socially monogamous passerines: The strength of direct and indirect selection on extrapair copulation behavior in females}},
journal = {The American Naturalist},
year = {2005},
volume = {165},
number = {5},
pages = {S26--S37}
}
@article{Fletcher:2010hs,
author = {Fletcher, William and Yang, Ziheng},
title = {{The Effect of Insertions, Deletions, and Alignment Errors on the Branch-Site Test of Positive Selection}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {10},
pages = {2257--2267}
}
@article{Karaket:2011tn,
author = {Karaket, T},
title = {{CERVUS vs. COLONY for successful parentage and sibship determinations in freshwater prawn Macrobrachium rosenbergii de Man}},
journal = {Aquaculture},
year = {2011}
}
@article{Lal:2009ew,
author = {Lal, G and Bromberg, J S},
title = {{Epigenetic mechanisms of regulation of Foxp3 expression}},
journal = {Blood},
year = {2009},
volume = {114},
number = {18},
pages = {3727--3735},
month = oct
}
@article{Salzberg:2012fr,
author = {Salzberg, S L and Salzberg, S L and Phillippy, A M and Zimin, A and Zimin, A and Puiu, D and Puiu, D and Magoc, T and Magoc, T and Koren, S and Treangen, T J and Treangen, T J and Schatz, M C and Delcher, A L and Delcher, A L and Roberts, M and Roberts, M and Marcais, G and Marcais, G and Pop, M and Yorke, J A and Yorke, J A},
title = {{GAGE: A critical evaluation of genome assemblies and assembly algorithms}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {3},
pages = {557--567},
month = mar
}
@article{Shufeldt:1907ty,
author = {Shufeldt, RW and Shufeldt, RW},
title = {{Polygamy and other modes of mating among birds}},
journal = {The American Naturalist},
year = {1907},
volume = {41},
pages = {161--175}
}
@article{Aury:2008ie,
author = {Aury, Jean-Marc and Cruaud, Corinne and Barbe, Valerie and Rogier, Odile and Mangenot, Sophie and Samson, Gaelle and Poulain, Julie and Anthouard, Veronique and Scarpelli, Claude and Artiguenave, Francois and Wincker, Patrick},
title = {{High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {603}
}
@article{Bateman:1948wk,
author = {Bateman, AJ},
title = {{Intra-Sexual Selection in \textit{Drosophila}}},
journal = {Heredity},
year = {1948},
volume = {2},
number = {3},
pages = {349--368}
}
@article{Schmoll:2005td,
author = {Schmoll, T and Dietrich, V and Winkel, W and Epplen, JT and Schurr, F and Lubjuhn, T},
title = {{Paternal genetic effects on offspring fitness are context dependent within the extrapair mating system of a socially monogamous passerine}},
journal = {Evolution},
year = {2005},
volume = {59},
number = {3},
pages = {645--657}
}
@article{Hoffmann:2011fp,
author = {Hoffmann, Ary A and Sgr{\`o}, Carla M},
title = {{Climate change and evolutionary adaptation}},
journal = {Nature},
year = {2011},
volume = {470},
number = {7335},
pages = {479--485},
month = feb
}
@article{Kolaczkowski:2009ch,
author = {Kolaczkowski, Bryan and Thornton, Joseph W},
title = {{Long-Branch Attraction Bias and Inconsistency in Bayesian Phylogenetics}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {12},
pages = {e7891},
month = dec
}
@article{Hawkins:1994wg,
author = {Hawkins, BA and Cornell, HV},
title = {{MAXIMUM PARASITISM RATES AND SUCCESSFUL BIOLOGICAL-CONTROL}},
journal = {Science (New York, NY)},
year = {1994},
volume = {266},
number = {5192},
pages = {1886--1886}
}
@article{Han:2014im,
author = {Han, Hong and Irimia, Manuel and Ross, P Joel and Sung, Hoon-Ki and Alipanahi, Babak and David, Laurent and Golipour, Azadeh and Gabut, Mathieu and Michael, Iacovos P and Nachman, Emil N and Wang, Eric and Trcka, Dan and Thompson, Tadeo and O{\textquoteright}Hanlon, Dave and Slobodeniuc, Valentina and Barbosa-Morais, Nuno L and Burge, Christopher B and Moffat, Jason and Frey, Brendan J and Nagy, andras and Ellis, James and Wrana, Jeffrey L and Blencowe, Benjamin J},
title = {{MBNL proteins repress ES-cell-specific alternative splicing and reprogramming.}},
journal = {Nature},
year = {2013},
volume = {498},
number = {7453},
pages = {241--245},
month = jun
}
@article{Johnson:2010cn,
author = {Johnson, W E and Onorato, D P and Roelke, M E and Land, E D and Cunningham, M and Belden, R C and McBride, R and Jansen, D and Lotz, M and Shindle, D and Howard, J and Wildt, D E and Penfold, L M and Hostetler, J A and Oli, M K and O{\textquoteright}Brien, S J},
title = {{Genetic Restoration of the Florida Panther}},
journal = {Science (New York, NY)},
year = {2010},
volume = {329},
number = {5999},
pages = {1641--1645},
month = sep
}
@article{Lowe:2012dl,
author = {Lowe, Craig B and Haussler, David},
title = {{29 Mammalian Genomes Reveal Novel Exaptations of Mobile Elements for Likely Regulatory Functions in the Human Genome}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e43128},
month = aug
}
@article{KIRSCHNER:1979ta,
author = {KIRSCHNER, LE and PULEO, JR},
title = {{WIPE-RINSE TECHNIQUE FOR QUANTITATING MICROBIAL-CONTAMINATION ON LARGE SURFACES}},
journal = {Applied and Environmental Microbiology},
year = {1979},
volume = {38},
number = {3},
pages = {466--470}
}
@article{Boomsma:2007ud,
author = {Boomsma, Jacobus J},
title = {{Kin selection versus sexual selection: Why the ends do not meet}},
journal = {Current biology : CB},
year = {2007},
volume = {17},
number = {16},
pages = {R673--R683}
}
@article{Morin:2008gf,
author = {Morin, Ryan and Bainbridge, Matthew and Fejes, Anthony and Hirst, Martin and Krzywinski, Martin and Pugh, Trevor and McDonald, Helen and Varhol, Richard and Jones, Steven and Marra, Marco},
title = {{Profiling the HeLa S3 transcriptome using randomly primed cDNA and massively parallel short-read sequencing}},
journal = {BioTechniques},
year = {2008},
volume = {45},
number = {1},
pages = {81--94},
month = jul
}
@article{Poon:2009ia,
author = {Poon, Art F Y and Brouwer, Kimberly C and Strathdee, Steffanie A and Firestone-Cruz, Michelle and Lozada, Remedios M and Kosakovsky Pond, Sergei L and Heckathorn, Douglas D and Frost, Simon D W},
title = {{Parsing Social Network Survey Data from Hidden Populations Using Stochastic Context-Free Grammars}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e6777},
month = sep
}
@article{Near:2012ef,
author = {Near, Thomas J and Near, Thomas J and Dornburg, Alex and Dornburg, Alex and Kuhn, Kristen L and Kuhn, Kristen L and Eastman, Joseph T and Eastman, Joseph T and Pennington, Jillian N and Pennington, Jillian N and Patarnello, Tomaso and Patarnello, Tomaso and Zane, Lorenzo and Fern{\'a}ndez, Daniel A and Fern{\'a}ndez, Daniel A and Jones, Christopher D and Jones, Christopher D},
title = {{Ancient climate change, antifreeze, and the evolutionary diversification of Antarctic fishes.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = feb,
annote = {q
w
}
}
@article{Drummond:2005dw,
author = {Drummond, A J},
title = {{Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {22},
number = {5},
pages = {1185--1192},
month = feb
}
@article{Liu:2009jh,
author = {Liu, K and Raghavan, S and Nelesen, S and Linder, C R and Warnow, T},
title = {{Rapid and Accurate Large-Scale Coestimation of Sequence Alignments and Phylogenetic Trees}},
journal = {Science (New York, NY)},
year = {2009},
volume = {324},
number = {5934},
pages = {1561--1564},
month = jun
}
@article{Eldon:2006vc,
author = {Eldon, B and Wakeley, J},
title = {{Coalescent processes when the distribution of offspring number among individuals is highly skewed}},
journal = {Genetics},
year = {2006},
volume = {172},
number = {4},
pages = {2621--2633}
}
@article{Lohmueller:2009dw,
author = {Lohmueller, K E and Bustamante, C D and Clark, A G},
title = {{Methods for Human Demographic Inference Using Haplotype Patterns From Genomewide Single-Nucleotide Polymorphism Data}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {1},
pages = {217--231},
month = apr
}
@article{Lembo:2007hb,
author = {Lembo, T and Haydon, D T and Velasco-Villa, A and Rupprecht, C E and Packer, C and Brandao, P E and Kuzmin, I V and Fooks, A R and Barrat, J and Cleaveland, S},
title = {{Molecular epidemiology identifies only a single rabies virus variant circulating in complex carnivore communities of the Serengeti}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1622},
pages = {2123--2130},
month = sep
}
@article{Aubry:2009ip,
author = {AUBRY, KEITH B and STATHAM, MARK J and SACKS, BENJAMIN N and PERRINE, JOHN D and WISELY, SAMANTHA M},
title = {{Phylogeography of the North American red fox: vicariance in Pleistocene forest refugia}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {12},
pages = {2668--2686},
month = jun
}
@article{SanchezGracia:2012ih,
author = {Sanchez-Gracia, Alejandro and Castresana, Jose and Castresana, Jose},
title = {{Impact of Deep Coalescence on the Reliability of Species Tree Inference from Different Types of DNA Markers in Mammals}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e30239},
month = jan
}
@article{Smith:1984vc,
author = {Smith, E and VanBelle, G},
title = {{Nonparametric Estimation of Species Richness}},
journal = {Biometrics},
year = {1984},
volume = {40},
number = {1},
pages = {119--129}
}
@article{Paterson:2010ct,
author = {Paterson, Steve and Vogwill, Tom and Buckling, Angus and Benmayor, Rebecca and Spiers, andrew J and Thomson, Nicholas R and Quail, Mike and Smith, Frances and Walker, Danielle and Libberton, Ben and Fenton, andrew and Hall, Neil and Brockhurst, Michael A},
title = {{Antagonistic coevolution accelerates molecular evolution}},
journal = {Nature},
year = {2010},
volume = {464},
number = {7286},
pages = {275--278},
month = feb
}
@article{Forstmeier:2012jj,
author = {Forstmeier, Wolfgang and Schielzeth, Holger and Mueller, Jakob C and Ellegren, Hans and Kempenaers, Bart},
title = {{Heterozygosity-fitness correlations in zebra finches: microsatellite markers can be better than their reputation.}},
journal = {Molecular Ecology},
year = {2012},
month = may
}
@article{Francino:1997tp,
author = {Francino, O and Francino, O and Amills, M and Amills, M and Sanchez, A and Sanchez, A},
title = {{Canine Mhc DRB1 genotyping by PCR-RFLP analysis}},
journal = {Animal Genetics},
year = {1997},
volume = {28},
number = {1},
pages = {41--45}
}
@article{Barber:1999wy,
author = {Barber, PH and Barber, PH},
title = {{Phylogeography of the canyon treefrog, Hyla arenicolor (Cope) based on mitochondrial DNA sequence data}},
journal = {Molecular Ecology},
year = {1999},
volume = {8},
number = {4},
pages = {547--562}
}
@article{Bollmer:2012jz,
author = {Bollmer, J L and Dunn, P O and Freeman-Gallant, C R and Whittingham, L A},
title = {{Social and extra-pair mating in relation to major histocompatibility complex variation in common yellowthroats}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1748},
pages = {4778--4785},
month = oct
}
@article{Hendrickson:2013ek,
author = {Hendrickson, Sher L},
title = {{A genome wide study of genetic adaptation to high altitude in feral andean Horses of the paramo}},
journal = {BMC Evolutionary Biology},
year = {2013},
volume = {13},
number = {1},
pages = {273}
}
@article{Li:2012bl,
author = {Li, Shijun and Li, Shijun and Wang, Cui and Wang, Cui and Yu, Wenhua and Yu, Wenhua and Zhao, Shuhong and Gong, Yanzhang and Gong, Yanzhang},
title = {{Identification of Genes Related to White and Black Plumage Formation by RNA-Seq from White and Black Feather Bulbs in Ducks}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e36592},
month = may
}
@article{Anonymous:mva5BZCI,
title = {{Gilchrist Eviction abortion {\&} infanticide BE 2006 (10)}},
year = {2006},
pages = {1--6},
month = jun
}
@article{Whiteside:2011cb,
author = {Whiteside, Helen M and Dawson, Deborah A and Soulsbury, Carl D and Harris, Stephen},
title = {{Mother Knows Best: Dominant Females Determine offspring Dispersal in Red Foxes}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {7},
pages = {e22145},
month = jul
}
@article{Widdig:2004cw,
author = {Widdig, A and Bercovitch, F B and Jurgen Streich, W and Sauermann, U and Nurnberg, P and Krawczak, M},
title = {{A longitudinal analysis of reproductive skew in male rhesus macaques}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2004},
volume = {271},
number = {1541},
pages = {819--826},
month = apr
}
@article{Fitzpatrick:2009dg,
author = {Fitzpatrick, Benjamin M and Johnson, Jarrett R and Kump, D Kevin and Shaffer, H Bradley and Smith, Jeramiah J and Voss, S Randal},
title = {{Rapid fixation of non-native alleles revealed by genome-wide SNP analysis of hybrid tiger salamanders}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {176}
}
@article{Hanriot:2008kl,
author = {Hanriot, Lucie and Keime, C{\'e}line and Gay, Nadine and Faure, Claudine and Dossat, Carole and Wincker, Patrick and Scote-Blachon, Celine and Peyron, Christelle and Gandrillon, Olivier},
title = {{A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {418}
}
@article{Lancaster:2007jx,
author = {Lancaster, Melanie L and Goldsworthy, Simon D and Sunnucks, Paul},
title = {{Multiple mating strategies explain unexpected genetic mixing of New Zealand fur seals with two congenerics in a recently recolonized population}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {24},
pages = {5267--5276}
}
@article{Wedekind:1997vb,
author = {Wedekind, C and Furi, S and Furi, S},
title = {{Body odour preferences in men and women: do they aim for specific MHC combinations or simply heterozygosity?}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1387},
pages = {1471--1479}
}
@article{Eizaguirre:2009ds,
author = {Eizaguirre, C and Eizaguirre, C and Yeates, S E and Yeates, S E and Lenz, T L and Lenz, T L and Kalbe, M and Kalbe, M and Milinski, M and Milinski, M},
title = {{MHC-based mate choice combines good genes and maintenance of MHC polymorphism.}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {15},
pages = {3316--3329},
month = aug
}
@article{Turner:2010es,
author = {Turner, Leslie M and Turner, Leslie M and Young, Adrian R and Young, Adrian R and R{\"o}mpler, Holger and R{\"o}mpler, Holger and Sch{\"o}neberg, Torsten and Phelps, Steven M and Hoekstra, Hopi E},
title = {{Monogamy evolves through multiple mechanisms: evidence from V1aR in deer mice.}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {6},
pages = {1269--1278},
month = jun
}
@article{Donovan:2000wi,
author = {Donovan, B and Donovan, B},
title = {{The repertoire of human efforts to avoid sexually transmissible diseases: past and present. Part 2: Strategies used during or after sex}},
journal = {Sexually Transmitted Infections},
year = {2000},
volume = {76},
number = {2},
pages = {88--93}
}
@article{Parkinson:2009ix,
author = {Parkinson, N and Stead, D and Bew, J and Heeney, J and Tsror Lahkim, L and Elphinstone, J},
title = {{Dickeya species relatedness and clade structure determined by comparison of recA sequences}},
journal = {INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY},
year = {2009},
volume = {59},
number = {10},
pages = {2388--2393},
month = oct
}
@article{Benedict:2007va,
author = {Benedict, Lauryn},
title = {{offspring discrimination without recognition: California Towhee responses to chick distress calls}},
journal = {The Condor},
year = {2007},
volume = {109},
number = {1},
pages = {79--87}
}
@article{Muers:2012ej,
author = {Muers, Mary and Muers, Mary},
title = {{Functional genomics: Complexities of occupancy and sequence.}},
journal = {Nature Reviews Genetics},
year = {2012},
volume = {13},
number = {5},
pages = {297}
}
@article{Anonymous:SkCywKup,
title = {{1307.7933-2}},
year = {2013},
pages = {1--15},
month = nov
}
@article{Kantardjieff:2009bc,
author = {Kantardjieff, Anne and Nissom, Peter Morin and Chuah, Song Hui and Yusufi, Faraaz and Jacob, Nitya M and Mulukutla, Bhanu Chandra and Yap, Miranda and Hu, Wei-Shou},
title = {{Developing genomic platforms for Chinese hamster ovary cells}},
journal = {Biotechnology Advances},
year = {2009},
volume = {27},
number = {6},
pages = {1028--1035},
month = nov
}
@article{Dong:2013hk,
author = {Dong, X and Zhai, Y and Hu, M and Zhong, G and Huang, W and Zheng, Z},
title = {{Proteomic and Properties Analysis of Botanical Insecticide Rhodojaponin III-Induced Response of the Diamondback Moth, \textit{Plutella} \textit{xyllostella} (L.)}},
journal = {PLOS ONE},
year = {2013},
volume = {8},
number = {7},
pages = {e67723}
}
@article{Levin:2009cc,
author = {Levin, Joshua Z and Berger, Michael F and Adiconis, Xian and Rogov, Peter and Melnikov, Alexandre and Fennell, Timothy and Nusbaum, Chad and Garraway, Levi A and Gnirke, andreas},
title = {{Targeted next-generation sequencing of a cancer transcriptome enhances detection of sequence variants and novel fusion transcripts}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {10},
pages = {R115}
}
@article{Pushkarev:2009cw,
author = {Pushkarev, Dmitry and Neff, Norma F and Quake, Stephen R},
title = {{Single-molecule sequencing of an individual human genome}},
journal = {Nature Biotechnology},
year = {2009},
volume = {27},
number = {9},
pages = {847--850},
month = aug
}
@article{HUTCHINSON:2007hm,
author = {HUTCHINSON, JOHN M C and Griffith, Simon C},
title = {{Extra-pair paternity in the Skylark Alauda arvensis}},
journal = {Ibis},
year = {2007},
volume = {150},
number = {1},
pages = {90--97},
month = oct
}
@article{Martin:2006db,
author = {Martin II, Lynn B and Glasper, Erica R and Nelson, Randy J and DeVries, A Courtney},
title = {{Prolonged separation delays wound healing in monogamous California mice, \textit{Peromyscus} \textit{californicus}, but not in polygynous white-footed mice, P. leucopus}},
journal = {Physiology {\&} Behavior},
year = {2006},
volume = {87},
number = {5},
pages = {837--841},
month = may
}
@article{Markman:2009hj,
author = {Markman, Shai and Hill, Naomi and Todrank, Josephine and Heth, Giora and Blaustein, Leon},
title = {{Differential aggressiveness between fire salamander (Salamandra infraimmaculata) larvae covaries with their genetic similarity}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {8},
pages = {1149--1155},
month = apr
}
@article{Spradling:2001tp,
author = {Spradling, TA and Hafner, MS and Demastes, JW},
title = {{Differences in rate of cytochrome-b evolution among species of rodents}},
journal = {Journal of Mammalogy},
year = {2001},
pages = {65--80}
}
@article{Asher:2008kp,
author = {Asher, Matthias and Lippmann, Tanja and Epplen, J{\"o}rg T and Kraus, Cornelia and Trillmich, Fritz and Sachser, Norbert},
title = {{Large males dominate: ecology, social organization, and mating system of wild cavies, the ancestors of the guinea pig}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {9},
pages = {1509--1521},
month = apr
}
@article{Song:2011dv,
author = {Song, Xiang and Song, Xiang and Goicoechea, Jose Luis and Goicoechea, Jose Luis and Ammiraju, Jetty S S and Ammiraju, Jetty S S and Luo, Meizhong and Luo, Meizhong and He, Ruifeng and He, Ruifeng and Lin, Jinke and Lin, Jinke and Lee, So-Jeong and Lee, So-Jeong and Sisneros, Nicholas and Sisneros, Nicholas and Watts, Tom and Watts, Tom and Kudrna, David A and Kudrna, David A and Golser, Wolfgang and Golser, Wolfgang and Ashley, Elizabeth and Ashley, Elizabeth and Collura, Kristi and Collura, Kristi and Braidotti, Michele and Braidotti, Michele and Yu, Yeisoo and Yu, Yeisoo and Matzkin, Luciano M and McAllister, Bryant F and McAllister, Bryant F and Markow, Therese Ann and Markow, Therese Ann and Wing, Rod A and Wing, Rod A},
title = {{The 19 Genomes of \textit{Drosophila}: A BAC Library Resource for Genus-Wide and Genome-Scale Comparative Evolutionary Research.}},
journal = {Genetics},
year = {2011},
volume = {187},
number = {4},
pages = {1023--1030},
month = apr
}
@article{Whitlock:2006vw,
author = {Whitlock, A and Sztatecsny, M and Jehle, R},
title = {{AFLPs: genetic markers for paternity studies in newts (Triturus vulgaris)}},
journal = {Amphibia-Reptilia},
year = {2006},
volume = {27},
number = {1},
pages = {126--129}
}
@article{Bales:2007iz,
author = {Bales, Karen L and Mason, William A and Catana, Ciprian and Cherry, Simon R and Mendoza, Sally P},
title = {{Neural correlates of pair-bonding in a monogamous primate}},
journal = {Brain Research},
year = {2007},
volume = {1184},
pages = {245--253},
month = dec
}
@article{Gray:2001wh,
author = {Gray, RH and Gray, RH and Wawer, MJ and Wawer, MJ and Brookmeyer, R and Brookmeyer, R and Sewankambo, NK and Sewankambo, NK and Serwadda, D and Serwadda, D and Wabwire-Mangen, F and Wabwire-Mangen, F and Lutalo, T and Lutalo, T and Li, XB and Li, XB and vanCott, T and vanCott, T and Quinn, TC and Quinn, TC},
title = {{Probability of HIV-1 transmission per coital act in monogamous, heterosexual, HIV-1-discordant couples in Rakai, Uganda}},
journal = {Lancet},
year = {2001},
volume = {357},
number = {9263},
pages = {1149--1153}
}
@article{Haynes:2012gs,
author = {Haynes, GD},
title = {{Identification of Novel Single Nucleotide Polymorphisms (SNPs) in Deer (Odocoileus spp.) Using the BovineSNP50 BeadChip}},
journal = {PLOS ONE},
year = {2012}
}
@article{Griffin:2002ty,
author = {Griffin, AS and West, SA},
title = {{Kin selection: fact and fiction}},
journal = {Trends In Ecology {\&} Evolution},
year = {2002},
volume = {17},
number = {1},
pages = {15--21}
}
@article{Zeng:2009fq,
author = {Zeng, K and Charlesworth, B},
title = {{Estimating Selection Intensity on Synonymous Codon Usage in a Nonequilibrium Population}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {2},
pages = {651--662},
month = oct
}
@article{Manov:2013cw,
author = {Manov, Irena and Manov, Irena and Hirsh, Mark and Hirsh, Mark and Iancu, Theodore C and Iancu, Theodore C and Malik, Assaf and Malik, Assaf and Sotnichenko, Nick and Sotnichenko, Nick and Band, Mark and Band, Mark and Avivi, Aaron and Avivi, Aaron and Shams, Imad and Shams, Imad},
title = {{Pronounced cancer resistance in a subterranean rodent, the blind mole-rat, Spalax: in vivo andin vitro evidence}},
year = {2013},
volume = {11},
number = {1},
pages = {1--1},
month = aug
}
@article{Malay:2010gb,
author = {Malay, Maria Celia {Machel D and Paulay, Gustav},
title = {{PERIPATRIC SPECIATION DRIVES DIVERSIFICATION AND DISTRIBUTIONAL PATTERN OF REEF HERMIT CRABS (DECAPODA: DIOGENIDAE: CALCINUS)}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {3},
pages = {634--662},
month = mar
}
@article{Flatz:2010io,
author = {Flatz, Ramona and Gerber, Leah R},
title = {{First Evidence for Adoption in California Sea Lions}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {11},
pages = {e13873},
month = nov
}
@article{Cote:2012cm,
author = {C{\^o}t{\'e}, Olivier and Lillie, Brandon N and Hayes, Michael Anthony and Clark, Mary Ellen and Bosch, Laura and Katavolos, Paula and Viel, Laurent and Bienzle, Dorothee},
title = {{Multiple secretoglobin 1A1 genes are differentially expressed in horses}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {712}
}
@article{BRAND:1968wa,
author = {BRAND, LR and RYCKMAN, RE},
title = {{LABORATORY LIFE HISTORIES OF PEROMYSCUS EREMICUS AND PEROMYSCUS INTERPARIETALIS}},
journal = {Journal of Mammalogy},
year = {1968},
volume = {49},
number = {3},
pages = {495--{\&}}
}
@article{Paigen:2010jv,
author = {Paigen, Kenneth and Petkov, Petko},
title = {{Mammalian recombination hot spots: properties, control and evolution}},
journal = {Nature Reviews Genetics},
year = {2010},
volume = {11},
number = {3},
pages = {221--233},
month = mar
}
@article{PAYNE:1991vc,
author = {PAYNE, RB and PAYNE, LL and Rowley, I and RUSSELL, EM},
title = {{SOCIAL RECOGNITION AND RESPONSE TO SONG IN COOPERATIVE RED-WINGED FAIRY-WRENS}},
journal = {Auk},
year = {1991},
volume = {108},
number = {4},
pages = {811--819}
}
@article{Gompert:2008ky,
author = {Gompert, Zachariah and Fordyce, James A and Forister, Matthew L and Nice, Chris C},
title = {{Recent colonization and radiation of North American Lycaeides (Plebejus) inferred from mtDNA}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2008},
volume = {48},
number = {2},
pages = {481--490},
month = aug
}
@article{Tajima:1989un,
author = {Tajima, F},
title = {{Statistical method for testing the neutral mutation hypothesis by DNA polymorphism}},
journal = {Genetics},
year = {1989},
volume = {123},
number = {3},
pages = {585--595}
}
@article{Dunn:1995wv,
author = {Dunn, PO and Cockburn, A and Mulder, RA},
title = {{FAIRY-WREN HELPERS OFTEN CARE FOR YOUNG TO WHICH THEY ARE UNRELATED}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1995},
volume = {259},
number = {1356},
pages = {339--343}
}
@article{BroJorgensen:2007hf,
author = {Bro-Jorgensen, Jakob},
title = {{THE INTENSITY OF SEXUAL SELECTION PREDICTS WEAPON SIZE IN MALE BOVIDS}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {6},
pages = {1316--1326},
month = jun
}
@article{Illig:2010kf,
author = {Illig, Thomas and Gieger, Christian and Zhai, Guangju and R{\"o}misch-Margl, Werner and Wang-Sattler, Rui and Prehn, Cornelia and Altmaier, Elisabeth and Kastenm{\"u}ller, Gabi and Kato, Bernet S and Mewes, Hans-Werner and Meitinger, Thomas and de Angelis, Martin Hrabe and Kronenberg, Florian and Soranzo, Nicole and Wichmann, H Erich and Spector, Tim D and Adamski, Jerzy and Suhre, Karsten},
title = {{A genome-wide perspective of genetic variation in human metabolism}},
journal = {Nature Genetics},
year = {2009},
volume = {42},
number = {2},
pages = {137--141},
month = dec
}
@article{Messer:2013kh,
author = {Messer, Philipp W and Petrov, Dmitri A},
title = {{Population genomics of rapidadaptation by soft selective sweeps}},
journal = {Trends In Ecology {\&} Evolution},
year = {2013},
volume = {28},
number = {11},
pages = {659--669},
month = nov
}
@article{Wang:2009hp,
author = {Wang, Han},
title = {{Comparative genomic analysis of teleost fish bmal genes}},
journal = {Genetica},
year = {2008},
volume = {136},
number = {1},
pages = {149--161},
month = oct
}
@article{Neame:2009js,
author = {Neame, Elizabeth},
title = {{Gene expression: Structure versus codon bias}},
journal = {Nature Reviews Genetics},
year = {2009},
month = apr
}
@article{Naud:2008dp,
author = {Naud, M-J and Curtis, J M R and Woodall, L C and Gaspar, M B},
title = {{Mate choice, operational sex ratio, and social promiscuity in a wild population of the long-snouted seahorse Hippocampus guttulatus}},
journal = {Behavioral Ecology},
year = {2008},
volume = {20},
number = {1},
pages = {160--164},
month = dec
}
@article{Dalziell:2008kq,
author = {Dalziell, Anastasia H and Cockburn, andrew},
title = {{Dawn song in superb fairy-wrens: a bird that seeks extrapair copulations during the dawn chorus}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {2},
pages = {489--500},
month = feb
}
@article{Ebersberger:2009ke,
author = {Ebersberger, Ingo and Strauss, Sascha and von Haeseler, Arndt},
title = {{HaMStR: Profile hidden markov model based search for orthologs in ESTs}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {157}
}
@article{Feldman:2010cf,
author = {Feldman, C R and Brodie, E D and Pfrender, M E},
title = {{Genetic architecture of a feeding adaptation: garter snake (Thamnophis) resistance to tetrodotoxin bearing prey}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1698},
pages = {3317--3325},
month = sep
}
@article{Hamady:2010dr,
author = {Hamady, Micah and Hamady, Micah and Lozupone, Catherine and Lozupone, Catherine and Knight, Rob},
title = {{Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data}},
journal = {Isme Journal},
year = {2010},
volume = {4},
number = {1},
pages = {17--27}
}
@article{Ramm:2005gu,
author = {Ramm, S A and Parker, G A and Stockley, P},
title = {{Sperm competition and the evolution of male reproductive anatomy in rodents}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2005},
volume = {272},
number = {1566},
pages = {949--955},
month = may
}
@article{Carmichael:2007bw,
author = {Carmichael, L E and Szor, G and Berteaux, D and Giroux, M A and Cameron, C and Strobeck, C},
title = {{Free love in the far north: plural breeding and polyandry of arctic foxes ( Alopex lagopus) on Bylot Island, Nunavut}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2007},
volume = {85},
number = {3},
pages = {338--343},
month = feb
}
@article{Gupta:2009uq,
author = {Gupta, P},
title = {{Single-molecule DNA sequencing technologies for future genomics research}},
journal = {Trends in Biotechnology},
year = {2009}
}
@article{Falkow:2004kj,
author = {Falkow, Stanley},
title = {{Opinion: Molecular Koch's postulates applied to bacterial pathogenicity {\textemdash} a personal recollection 15 years later}},
journal = {Nature Reviews Microbiology},
year = {2004},
volume = {2},
number = {1},
pages = {67--72},
month = jan
}
@article{Feng:2009bt,
author = {Feng, Bing-Jian and Sun, Liang-Dan and Soltani-Arabshahi, Razieh and Bowcock, Anne M and Nair, Rajan P and Stuart, Philip and Elder, James T and Schrodi, Steven J and Begovich, Ann B and Abecasis, Gon{\c c}alo R and Zhang, Xue-Jun and Callis-Duffin, Kristina P and Krueger, Gerald G and Goldgar, David E},
title = {{Multiple Loci within the Major Histocompatibility Complex Confer Risk of Psoriasis}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {8},
pages = {e1000606},
month = aug
}
@article{Rovero:2008jx,
author = {Rovero, F and Rathbun, G B and Perkin, A and Jones, T and Ribble, D O and Leonard, C and Mwakisoma, R R and Doggart, N},
title = {{A new species of giant sengi or elephant-shrew (genus Rhynchocyon) highlights the exceptional biodiversity of the Udzungwa Mountains of Tanzania}},
journal = {Journal of Zoology},
year = {2008},
volume = {274},
number = {2},
pages = {126--133},
month = feb
}
@article{Laurent:2007wa,
author = {Laurent, V and Planes, S},
title = {{Effective population size estimation on Sardina pilchardus in the Bay of Biscay using a temporal genetic approach}},
journal = {Biological Journal of The Linnean Society},
year = {2007},
volume = {90},
number = {4},
pages = {591--602}
}
@article{Kent:2002jd,
author = {Kent, W James},
title = {{BLAT{\textemdash}the BLAST-like alignment tool}},
journal = {Genome Research},
year = {2002},
volume = {12},
number = {4},
pages = {656--664}
}
@article{Promerova:2009cr,
author = {Promerov{\'a}, M and Promerov{\'a}, M and Albrecht, T and Bryja, J},
title = {{Extremely high MHC class I variation in a population of a long-distance migrant, the Scarlet Rosefinch (Carpodacus erythrinus)}},
journal = {Immunogenetics},
year = {2009},
volume = {61},
number = {6},
pages = {451--461},
month = may
}
@article{Zelano:2002ty,
author = {Zelano, Bethanne and Edwards, Scott V},
title = {{An MHC component to kin recognition and mate choice in birds: Predictions, progress, and prospects}},
journal = {The American Naturalist},
year = {2002},
volume = {160},
pages = {S225--S237}
}
@article{Baldini:2013ki,
author = {Baldini, Francesco and Gabrieli, Paolo and South, Adam and Valim, Clarissa and Mancini, Francesca and Catteruccia, Flaminia},
title = {{The Interaction between a Sexually Transferred Steroid Hormone and a Female Protein Regulates Oogenesis in the Malaria Mosquito Anopheles gambiae}},
journal = {PLOS Biology},
year = {2013},
volume = {11},
number = {10},
pages = {e1001695},
month = oct
}
@article{Grillo:1996uy,
author = {Grillo, G and Grillo, G and Attimonelli, M and Attimonelli, M and Liuni, S and Liuni, S and Pesole, G and Pesole, G},
title = {{CLEANUP: A fast computer program for removing redundancies from nucleotide sequence databases}},
journal = {Computer applications in the biosciences : CABIOS},
year = {1996},
volume = {12},
number = {1},
pages = {1--8}
}
@article{Venables:2011wz,
author = {Venables, WN},
title = {{R-intro}},
year = {2011},
pages = {1--109},
month = apr
}
@article{GarciaGonzalez:2007hma,
author = {Garcia-Gonzalez, Francisco and Simmons, Leigh W},
title = {{SHORTER SPERM CONFER HIGHER COMPETITIVE FERTILIZATION SUCCESS}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {4},
pages = {816--824},
month = apr
}
@article{Kutsukake:2009jv,
author = {Kutsukake, Nobuyuki and Clutton Brock, Tim H},
title = {{Grooming and the value of social relationships in cooperatively breeding meerkats}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {2},
pages = {271--279},
month = feb
}
@article{Narzisi:2011bo,
author = {Narzisi, Giuseppe and Mishra, Bud},
title = {{Comparing \textit{de novo} genome assembly: the long and short of it.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {4},
pages = {e19175}
}
@article{EyreWalker:2013hf,
author = {Eyre-Walker, Adam and Stoletzki, Nina},
title = {{The Assessment of Science: The Relative Merits of Post-Publication Review, the Impact Factor, and the Number of Citations}},
journal = {PLOS Biology},
year = {2013},
volume = {11},
number = {10},
pages = {e1001675},
month = oct
}
@article{Hittinger:2010hg,
author = {Hittinger, C T and Johnston, M and Tossberg, J T and Rokas, A},
title = {{Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {4},
pages = {1476--1481},
month = jan
}
@article{Gottelli:2007ib,
author = {Gottelli, D and Wang, J and Bashir, S and Durant, S M},
title = {{Genetic analysis reveals promiscuity among female cheetahs}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1621},
pages = {1993--2001},
month = aug
}
@article{Walters:2011fl,
author = {Walters, James R and Walters, James R and Harrison, Richard G and Harrison, Richard G},
title = {{Decoupling of Rapid and Adaptive Evolution Among Seminal Fluid Proteins in Heliconius Butterflies with Divergent Mating Systems}},
journal = {Evolution},
year = {2011},
volume = {65},
number = {10},
pages = {2855--2871}
}
@article{Zielinski:2013dg,
author = {Zieli{\'{n}}ski, P and Stuglik, M T and Dudek, K and Konczal, M and Babik, W},
title = {{Development, validation and high-throughput analysis of sequence markers in nonmodel species.}},
journal = {Molecular Ecology Resources},
year = {2014},
volume = {14},
number = {2},
pages = {352--360},
month = mar
}
@article{Kelt:2008tp,
author = {Kelt, Douglas A and Wilson, James A and Konno, Eddy S and Konno, Eddy S and Braswell, Jessica D and Braswell, Jessica D and Deutschman, Douglas and Deutschman, Douglas},
title = {{Differential responses of two species of kangaroo rat (\textit{Dipodomys}) to heavy rains: A humbling reappraisal}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {1},
pages = {252--254}
}
@article{GU:1995vd,
author = {GU, X and Fu, YX and LI, WH},
title = {{Maximum-Likelihood-Estimation of the Heterogeneity of Substitution Rate Among Nucleotide Sites}},
journal = {Molecular Biology and Evolution},
year = {1995},
volume = {12},
number = {4},
pages = {546--557}
}
@article{Blekhman:2008eq,
author = {Blekhman, Ran and Man, Orna and Herrmann, Leslie and Boyko, Adam R and Indap, Amit and Kosiol, Carolin and Bustamante, Carlos D and Teshima, Kosuke M and Przeworski, Molly},
title = {{Natural Selection on Genes that Underlie Human Disease Susceptibility}},
journal = {Current Biology},
year = {2008},
volume = {18},
number = {12},
pages = {883--889},
month = jun
}
@article{Gold:2008kc,
author = {Gold, B and Kirchhoff, T and Stefanov, S and Lautenberger, J and Viale, A and Garber, J and Friedman, E and Narod, S and Olshen, A B and Gregersen, P and Kosarin, K and Olsh, A and Bergeron, J and Ellis, N A and Klein, R J and Clark, A G and Norton, L and Dean, M and Boyd, J and offit, K},
title = {{Genome-wide association study provides evidence for a breast cancer risk locus at 6q22.33}},
journal = {PNAS},
year = {2008},
volume = {105},
number = {11},
pages = {4340--4345},
month = mar
}
@article{Kokko:1996vl,
author = {Kokko, H and Lindstrom, J},
title = {{Kin selection and the evolution of leks: Whose success do young males maximize?}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1996},
volume = {263},
number = {1372},
pages = {919--923}
}
@article{Bradic:2013kg,
author = {Bradic, M and Teotonio, H and Borowsky, R L},
title = {{The Population Genomics of Repeated Evolution in the Blind Cavefish Astyanax mexicanus}},
journal = {Molecular Biology and Evolution},
year = {2013},
volume = {30},
number = {11},
pages = {2383--2400},
month = oct
}
@article{Cizkova:2010es,
author = {C{\'\i}{\v z}kov{\'a}, D and de Bellocq, J Gouy and Baird, S J E and Pialek, J and Bryja, J},
title = {{Genetic structure and contrasting selection pattern at two major histocompatibility complex genes in wild house mouse populations}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {5},
pages = {727--740},
month = sep
}
@article{Gay:2011jj,
author = {Gay, Laurene and Hosken, David J and Eady, Paul and Vasudev, Ram and Tregenza, Tom},
title = {{THE EVOLUTION OF HARM-EFFECT OF SEXUAL CONFLICTS AND POPULATION SIZE}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {3},
pages = {725--737},
month = nov
}
@article{Jungreis:2011ib,
author = {Jungreis, I and Lin, M F and Spokony, R and Chan, C S and Negre, N and Victorsen, A and White, K P and Kellis, M},
title = {{Evidence of abundant stop codon readthrough in \textit{Drosophila} and other metazoa}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {12},
pages = {2096--2113},
month = dec
}
@article{HECK:1975vq,
author = {HECK, KL and VanBelle, G and SIMBERLOFF, D},
title = {{Explicit Calculation of Rarefaction Diversity Measurement and Determination of Sufficient Sample Size}},
journal = {Ecology},
year = {1975},
volume = {56},
number = {6},
pages = {1459--1461}
}
@article{Palanza:2005ko,
author = {Palanza, P and Dellaseta, D and Ferrari, P and Parmigiani, S},
title = {{Female competition in wild house mice depends upon timing of female/male settlement and kinship between females}},
journal = {Animal Behaviour},
year = {2005},
volume = {69},
number = {6},
pages = {1259--1271},
month = jun
}
@article{Green:2011da,
author = {Green, Eric D and Guyer, Mark S and Manolio, Teri A and Peterson, Jane L},
title = {{Charting a course for genomic medicine from base pairs to bedside}},
journal = {Nature},
year = {2011},
volume = {470},
number = {7333},
pages = {204--213},
month = feb
}
@article{Lane:2008iu,
author = {LANE, J and Boutin, S and GUNN, M and Slate, J and COLTMAN, D},
title = {{Female multiple mating and paternity in free-ranging North American red squirrels}},
journal = {Animal Behaviour},
year = {2008},
volume = {75},
number = {6},
pages = {1927--1937},
month = jun
}
@article{Koopman:2007wi,
author = {Koopman, Marni E and Mcdonald, David B and Hayward, Gregory D},
title = {{Microsatellite analysis reveals genetic monogamy among female boreal owls}},
journal = {Journal of Raptor Research},
year = {2007},
volume = {41},
number = {4},
pages = {314--318}
}
@article{Drooz:1985vt,
author = {Drooz, A T and Bradnam, Keith R and Fass, Joseph N and Alexandrov, Anton and Baranay, Paul and Bechner, Michael and and Boisvert, S{\'e}bastien and Chapman, Jarrod A and Chapuis, Guillaume and Chikhi, Rayan and Chitsaz, Hamidreza and Chou, Wen-Chi and Corbeil, Jacques and Del Fabbro, Cristian and Docking, T Roderick and Durbin, Richard and Earl, Dent and Emrich, Scott and Fedotov, Pavel and Fonseca, Nuno A and Ganapathy, Ganeshkumar and Gibbs, Richard A and Gnerre, Sante and Godzaridis, El{\'e}nie and Goldstein, Steve and Haimel, Matthias and Hall, Giles and Haussler, David and Hiatt, Joseph B and Ho, Isaac Y and Howard, Jason and Hunt, Martin and Jackman, Shaun D and Jaffe, David B and Jarvis, Erich and Jiang, Huaiyang and Kazakov, Sergey and Kersey, Paul J and Kitzman, Jacob O and Knight, James R and Koren, Sergey and Lam, Tak-Wah and Lavenier, Dominique and Laviolette, Fran{\c c}ois and Li, Yingrui and Li, Zhenyu and Liu, Binghang and Liu, Yue and Luo, Ruibang and Maccallum, Iain and \textbf{MacManes}, Matthew D and Maillet, Nicolas and Melnikov, Sergey and Vieira, Bruno Miguel and Naquin, Delphine and Ning, Zemin and Otto, Thomas D and Paten, Benedict and Paulo, Oct{\'a}vio S and Phillippy, Adam M and Pina-Martins, Francisco and Place, Michael and Przybylski, Dariusz and Qin, Xiang and Qu, Carson and Ribeiro, Filipe J and Richards, Stephen and Rokhsar, Daniel S and Ruby, J Graham and Scalabrin, Simone and Schatz, Michael C and Schwartz, David C and Sergushichev, Alexey and Sharpe, Ted and Shaw, Timothy I and Shendure, Jay and Shi, Yujian and Simpson, Jared T and Song, Henry and Tsarev, Fedor and Vezzi, Francesco and Vicedomini, Riccardo and Wang, Jun and Worley, Kim C and Yin, Shuangye and Yiu, Siu-Ming and Yuan, Jianying and Zhang, Guojie and Zhang, Hao and Zhou, Shiguo and Korf, Ian F},
title = {{Insects of eastern forests}},
journal = {USDA For. Serv. Misc. Publ. 1426},
year = {1985}
}
@article{Hadly:2003vna,
author = {Hadly, E A and Hadly, E A and van Tuinen, M and van Tuinen, M and Chan, Y and Chan, Y and Heiman, K and Heiman, K},
title = {{Ancient DNA evidence of prolonged population persistence with negligible genetic diversity in an endemic tuco-tuco (\emph{\textit{Ctenomys} \textit{sociabilis}})}},
journal = {Journal of Mammalogy},
year = {2003},
volume = {84},
number = {2},
pages = {403--417}
}
@article{Brown:2003ic,
author = {Brown, M W and Schmitt, J J and Abraham, Barbara J},
title = {{Seasonal and Diurnal Dynamics of Spiders (Araneae) in West Virginia Orchards and the Effect of Orchard Management on Spider Communities}},
journal = {Environmental Entomology},
year = {2003},
volume = {32},
number = {4},
pages = {830--839},
month = aug
}
@article{Liu:2013vw,
author = {Liu, B and Liu, B and Shi, Y and Shi, Y and Yuan, J and Yuan, J and Hu, X and Hu, X and Zhang, H and Zhang, H and Li, N and Li, Z and Li, Z},
title = {{Estimation of genomic characteristics by analyzing k-mer frequency in \textit{de novo} genome projects}},
journal = {arXiv.org},
year = {2013},
eprint = {631FF6F8-5BE5-42C0-8504-4327C61CFA68},
eprinttype = {scholar},
pages = {1--47}
}
@article{Beuchat:1996vb,
author = {Beuchat, CA},
title = {{Structure and concentrating ability of the mammalian kidney: correlations with habitat}},
journal = {American Journal of Physiology-Regulatory},
year = {1996}
}
@article{Wetzel:2009fr,
author = {Wetzel, Daniel P and Westneat, David F},
title = {{Heterozygosity and extra-pair paternity: biased tests result from the use of shared markers}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {9},
pages = {2010--2021},
month = may
}
@article{Walum:2008hc,
author = {Walum, H and Westberg, L and Henningsson, S and Neiderhiser, J M and Reiss, D and Igl, W and Ganiban, J M and Spotts, E L and Pedersen, N L and Eriksson, E and Lichtenstein, P},
title = {{Genetic variation in the vasopressin receptor 1a gene (AVPR1A) associates with pair-bonding behavior in humans}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {37},
pages = {14153--14156},
month = sep
}
@article{Meldrum:2009bp,
author = {Meldrum, Gennifer E and Ruckstuhl, Kathreen E},
title = {{Mixed-sex group formation by bighorn sheep in winter: trading costs of synchrony for benefits of group living}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {4},
pages = {919--929},
month = apr
}
@article{Anonymous:2012ky,
title = {{A Maximum-Likelihood Method to Correct for Allelic Dropout in Microsatellite Data with No Replicate Genotypes}},
year = {2012},
pages = {1--27},
month = sep
}
@article{Wienemann:2011dt,
author = {Wienemann, Tobias and Wienemann, Tobias and Schmitt-Wagner, Dirk and Schmitt-Wagner, Dirk and Meuser, Katja and Meuser, Katja and Segelbacher, Gernot and Segelbacher, Gernot and Schink, Bernhard and Schink, Bernhard and Brune, andreas and Brune, andreas and Berthold, Peter and Berthold, Peter},
title = {{The bacterial microbiota in the ceca of Capercaillie}},
journal = {Systematic and applied microbiology},
year = {2011},
pages = {1--10},
month = aug
}
@article{Tchekneva:2008fk,
author = {Tchekneva, Elena E. and Tchekneva, Elena E. and Khuchua, Zaza and Khuchua, Zaza and Davis, Linda S. and Davis, Linda S. and Kadkina, Veronika and Kadkina, Veronika and Dunn, Stephen R. and Dunn, Stephen R. and Bachman, Sebastian and Bachman, Sebastian and Ishibashi, Kenichi and Ishibashi, Kenichi and Rinchik, Eugene M. and Rinchik, Eugene M. and Harris, Raymond C. and Harris, Raymond C. and Dikov, Mikhail M. and Dikov, Mikhail M. and Breyer, Matthew D. and Breyer, Matthew D.},
title = {{Single amino acid substitution in aquaporin 11 causes renal failure}},
journal = {Journal of the American Society of Nephrology : JASN},
year = {2008},
volume = {19},
number = {10},
pages = {1955--1964}
}
@article{Li:2009gf,
author = {LI, Y D and Liang, H and Gu, Z and Lin, Z and Guan, W and Zhou, L and LI, Y Q and Li, W-H},
title = {{Detecting positive selection in the budding yeast genome}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {12},
pages = {2430--2437},
month = dec
}
@article{Nicotra:2009eu,
author = {Nicotra, Matthew L and Powell, Anahid E and Rosengarten, Rafael D and Moreno, Maria and Grimwood, Jane and Lakkis, Fadi G and Dellaporta, Stephen L and Buss, Leo W},
title = {{A Hypervariable Invertebrate Allodeterminant}},
journal = {Current Biology},
year = {2009},
volume = {19},
number = {7},
pages = {583--589},
month = apr
}
@article{Feldhamer:2008wp,
author = {Feldhamer, GA and Rodman, LB and Carter, TC and Schauber, EM},
title = {{Multiple Captures of White-Footed Mice (\textit{Peromyscus} Leucopus): Evidence for Social Structure?}},
journal = {The American Midland Naturalist},
year = {2008},
volume = {160},
number = {1},
pages = {171--177}
}
@article{Elgot:2012ko,
author = {Elgot, Abdeljalil and El Hiba, Omar and Gamrani, Halima},
title = {{Acta Histochemica}},
journal = {Acta Histochemica},
year = {2012},
volume = {114},
number = {6},
pages = {603--607},
month = oct
}
@article{Zane:2006hs,
author = {Zane, L and Marcato, S and Bargelloni, L and Bortolotto, E and Papetti, C and Simonato, M and Varotto, V and Patarnello, T},
title = {{Demographic history and population structure of the Antarctic silverfish Pleuragramma antarcticum}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {14},
pages = {4499--4511},
month = sep
}
@article{Wang:2009cs,
author = {Wang, Yong and Qian, Pei-Yuan},
title = {{Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7401},
month = oct
}
@article{Hoffman:2011gx,
author = {Hoffman, J I and Clarke, A and Clarke, A and Linse, K and Linse, K and Peck, L S and Peck, L S},
title = {{Effects of brooding and broadcasting reproductive modes on the population genetic structure of two Antarctic gastropod molluscs}},
journal = {Marine Biology},
year = {2011},
volume = {158},
number = {2},
pages = {287--296}
}
@article{vanBaalen:2006vy,
author = {van Baalen, M and Beekman, M},
title = {{The costs and benefits of genetic heterogeneity in resistance against parasites in social insects}},
journal = {The American Naturalist},
year = {2006},
volume = {167},
number = {4},
pages = {568--577}
}
@article{Shanmugam:1996ed,
author = {Shanmugam, S},
title = {{Ontogeny of Angiotensin II Receptors}},
journal = {Cell biology international},
year = {1996},
volume = {20},
number = {3},
pages = {169--176},
month = mar
}
@article{Lupold:2009hf,
author = {L{\"u}pold, S and Calhim, S and Immler, S and Birkhead, T R},
title = {{Sperm morphology and sperm velocity in passerine birds}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1659},
pages = {1175--1181},
month = mar
}
@article{Pfau:1999vg,
author = {Pfau, Russell S and Van Den Bussche, Ronald A and Van Den Bussche, Ronald A and McBee, Karen and McBee, Karen and Lochmiller, Robert L and Lochmiller, Robert L},
title = {{Allelic diversity at the Mhc-DQA locus in cotton rats (\emph{Sigmodon hispidus}) and a comparison of DQA sequences within the family Muridae (Mammalia : Rodentia)}},
journal = {Immunogenetics},
year = {1999},
volume = {49},
number = {10},
pages = {886--893}
}
@article{Ives:2010be,
author = {Ives, Anthony R and Helmus, Matthew R and Helmus, Matthew R},
title = {{Phylogenetic Metrics of Community Similarity}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {5},
pages = {E128--E142}
}
@article{Colautti:2013ewa,
author = {Colautti, Robert I and Barrett, Spencer C H},
title = {{Rapid Adaptation to Climate Facilitates Range Expansion of an Invasive Plant}},
journal = {Science},
year = {2013},
volume = {342},
number = {6156},
pages = {364--366},
month = oct
}
@article{Deaton:2011cz,
author = {Deaton, Aim{\'e}e M and Bird, Adrian},
title = {{CpG islands and the regulation of transcription.}},
journal = {Genes {\&} Development},
year = {2011},
volume = {25},
number = {10},
pages = {1010--1022},
month = may
}
@article{Parkhomchuk:2009kk,
author = {Parkhomchuk, D and Borodina, T and Amstislavskiy, V and Banaru, M and Hallen, L and Krobitsch, S and Lehrach, H and Soldatov, A},
title = {{Transcriptome analysis by strand-specific sequencing of complementary DNA}},
journal = {Nucleic Acids Research},
year = {2009},
volume = {37},
number = {18},
pages = {e123--e123},
month = oct
}
@article{Yang:2013iz,
author = {Yang, Ya and Smith, Stephen A},
title = {{Optimizing \textit{de novo} assembly of short-read RNA-seq data for phylogenomics.}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
pages = {328}
}
@article{Hinde:2010cv,
author = {Hinde, C A and Johnstone, R A and Kilner, R M},
title = {{Parent-offspring Conflict and Coadaptation}},
journal = {Science (New York, NY)},
year = {2010},
volume = {327},
number = {5971},
pages = {1373--1376},
month = mar
}
@article{Stone:2005cc,
author = {Stone, EA and Stone, EA and Sidow, A and Sidow, A},
title = {{Physicochemical constraint violation by missense substitutions mediates impairment of protein function and disease severity}},
journal = {Genome Research},
year = {2005},
volume = {15},
number = {7},
pages = {978--986}
}
@article{Leggett:2013bqa,
author = {Leggett, Richard M},
title = {{Sequencing quality assessment tools to enable data-driveninformatics for high throughput genomics}},
year = {2013},
pages = {1--5},
month = dec
}
@article{Walling:2010kx,
author = {Walling, Craig A and Pemberton, Josephine M and Hadfield, Jarrod D and Kruuk, Loeske E B},
title = {{Comparing parentage inference software: reanalysis of a red deer pedigree}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {9},
pages = {1914--1928},
month = may
}
@article{Elgar:2000vj,
author = {Elgar, MA and Schneider, JM and Herberstein, ME},
title = {{Female control of paternity in the sexually cannibalistic spider Argiope keyserlingi}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1460},
pages = {2439--2443}
}
@article{Araki:2007fp,
author = {Araki, Hitoshi and Waples, Robin S and Blouin, Michael S},
title = {{A potential bias in the temporal method for estimating N ein admixed populations under natural selection}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {11},
pages = {2261--2271},
month = jun
}
@article{Bi:2012cg,
author = {Bi, Ke and Vanderpool, Dan and Singhal, Sonal and Linderoth, Tyler and Moritz, Craig and Good, Jeffrey M},
title = {{Transcriptome-based exon capture enables highly cost-effective comparative genomic data collection at moderate evolutionary scales.}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
pages = {403}
}
@article{Knornschild:2011bv,
author = {Kn{\"o}rnschild, Mirjam and Ueberschaer, Katja and Helbig, Maria and Kalko, Elisabeth K V},
title = {{Sexually Selected Infanticide in a Polygynous Bat}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {9},
pages = {e25001--8},
month = sep
}
@article{Walsberg:2000uu,
author = {Walsberg, GE},
title = {{Small mammals in hot deserts: Some generalizations revisited}},
journal = {Bioscience},
year = {2000},
volume = {50},
number = {2},
pages = {109--120}
}
@article{Cox:2010ts,
author = {Cox, MJ and Allgaier, M and Taylor, B and Baek, MS and Huang, YJ},
title = {{Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients}},
journal = {PLOS ONE},
year = {2010}
}
@article{Hoggard:2011dp,
author = {Hoggard, Stephen J and Hoggard, Stephen J and Wilson, Peter D and Wilson, Peter D and Beattie, andrew J and Beattie, andrew J and Stow, Adam J and Stow, Adam J},
title = {{Social complexity and nesting habits are factors in the evolution of antimicrobial defences in wasps.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {7},
pages = {e21763}
}
@article{anderson:2011ey,
author = {anderson, Jennifer L and anderson, Jennifer L and Albergotti, Lori and Albergotti, Lori and Ellebracht, Barbara and Ellebracht, Barbara and Huey, Raymond B and Phillips, Patrick C and Phillips, Patrick C},
title = {{Does thermoregulatory behavior maximize reproductive fitness of natural isolates of Caenorhabditis elegans?}},
journal = {BMC Evolutionary Biology},
year = {2011},
volume = {11},
number = {1},
pages = {157},
month = jun
}
@article{Kishino:1990vc,
author = {Kishino, H and Kishino, H and MIYATA, T and MIYATA, T and Hasegawa, M and Hasegawa, M},
title = {{Maximum-Likelihood Inference of Protein Phylogeny and the Origin of Chloroplasts}},
journal = {Journal of Molecular Evolution},
year = {1990},
volume = {31},
number = {2},
pages = {151--160}
}
@article{DEWALT:1993tz,
author = {DEWALT, TS and ZIMMERMAN, EG and PLANZ, JV},
title = {{MITOCHONDRIAL-DNA PHYLOGENY OF SPECIES OF THE BOYLII AND TRUEI GROUPS OF THE GENUS PEROMYSCUS}},
journal = {Journal of Mammalogy},
year = {1993},
volume = {74},
number = {2},
pages = {352--362}
}
@article{Barreiro:2009it,
author = {Barreiro, Luis B and Ben-Ali, Meriem and Quach, Helene and Laval, Guillaume and Patin, Etienne and Pickrell, Joseph K and Bouchier, Christiane and Tichit, Magali and Neyrolles, Olivier and Gicquel, Brigitte and Kidd, Judith R and Kidd, Kenneth K and Alcais, Alexandre and Ragimbeau, Josiane and Pellegrini, Sandra and Abel, Laurent and Casanova, Jean-Laurent and Quintana-Murci, Lluis},
title = {{Evolutionary Dynamics of Human Toll-Like Receptors and Their Different Contributions to Host Defense}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {7},
pages = {e1000562},
month = jul
}
@article{Davis:2008ju,
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {1},
month = jan
}
@article{Juola:2011wf,
author = {Juola, F A and Dearborn, D C},
title = {{Sequence-based evidence for major histocompatibility complex-disassortative mating in a colonial seabird}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2011}
}
@article{Kasumovic:2003hw,
author = {Kasumovic, M M and Ratcliffe, L M and Boag, P T},
title = {{A method to improve confidence in paternity assignment in an open mating system}},
journal = {Canadian Journal of Zoology-Revue Canadienne De Zoologie},
year = {2003},
volume = {81},
number = {12},
pages = {2073--2076},
month = dec
}
@article{Reeder:liXlUbh-,
author = {Reeder, Serena A},
title = {{MOLECULAR SYSTEMATICS OF NEOTOMINE-PEROMYSCINE RODENTS BASED ON NUCLEAR DNA SEQUENCES}},
year = {2008},
pages = {88},
month = apr
}
@article{Mciver:2011dh,
author = {Mciver, L J and Fondon, III, J W and Skinner, M A and Garner, H R},
title = {{Evaluation of microsatellite variation in the 1000 Genomes Project pilot studies is indicative of the quality and utility of the raw data and alignments}},
journal = {Genomics},
year = {2011},
volume = {97},
number = {4},
pages = {193--199},
month = apr
}
@article{Chapman:2004cv,
author = {Chapman, Demian D and Prod{\"o}hl, Paulo A and Gelsleichter, James and Manire, Charles A and Shivji, Mahmood S},
title = {{Predominance of genetic monogamy by females in a hammerhead shark, Sphyrna tiburo: implications for shark conservation}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {7},
pages = {1965--1974},
month = apr
}
@article{McNamara:2008cs,
author = {McNamara, Kathryn B and Elgar, Mark A and Jones, Theresa M},
title = {{A longevity cost of re-mating but no benefits of polyandry in the almond moth, \textit{Cadra cautella}}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {62},
number = {9},
pages = {1433--1440},
month = mar
}
@article{Wolff:2004kw,
author = {Wolff, Jerry O and Macdonald, David W},
title = {{Promiscuous females protect their offspring}},
journal = {Trends In Ecology {\&} Evolution},
year = {2004},
volume = {19},
number = {3},
pages = {127--134},
month = mar
}
@article{Mabry:2008gka,
author = {Mabry, K E and Stamps, J A},
title = {{Dispersing brush mice prefer habitat like home}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1634},
pages = {543--548},
month = mar
}
@article{MOORE:1994tj,
author = {MOORE, AJ and MOORE, AJ},
title = {{GENETIC EVIDENCE FOR THE GOOD GENES PROCESS OF SEXUAL SELECTION}},
journal = {Behavioral Ecology and Sociobiology},
year = {1994},
volume = {35},
number = {4},
pages = {235--241}
}
@article{Lackey:1985wb,
author = {Lackey, JA and Huckaby, DG and Huckaby, DG and Ormiston, BG and Ormiston, BG},
title = {{\textit{Peromyscus} leucopus}},
journal = {Mammalian Species},
year = {1985},
pages = {1--10}
}
@article{Poon:2008dm,
author = {Poon, A F Y and Lewis, F I and Frost, S D W and Kosakovsky Pond, S L},
title = {{Spidermonkey: rapid detection of co-evolving sites using Bayesian graphical models}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {17},
pages = {1949--1950},
month = aug
}
@article{Roberts:2008gw,
author = {Roberts, S C and Gosling, L M and Carter, V and Petrie, M},
title = {{MHC-correlated odour preferences in humans and the use of oral contraceptives}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2008},
volume = {275},
number = {1652},
pages = {2715--2722},
month = dec
}
@article{BURLEY:1994wg,
author = {BURLEY, NT and ENSTROM, DA and ENSTROM, DA and CHITWOOD, L and CHITWOOD, L},
title = {{EXTRA-PAIR RELATIONS IN ZEBRA FINCHES - DIFFERENTIAL MALE SUCCESS RESULTS FROM FEMALE TACTICS}},
journal = {Animal Behaviour},
year = {1994},
volume = {48},
number = {5},
pages = {1031--1041}
}
@article{Sibly:2011hl,
author = {Sibly, R M and Curnow, R N},
title = {{Selfishness and altruism can coexist when help is subject to diminishing returns}},
journal = {Heredity},
year = {2011},
volume = {107},
number = {2},
pages = {167--173},
month = feb
}
@article{Dean:2012bc,
author = {Dean, Rebecca and Dean, Rebecca and Perry, Jennifer C and Perry, Jennifer C and Pizzari, Tommaso and Mank, Judith E and Wigby, Stuart},
title = {{Experimental Evolution of a Novel Sexually Antagonistic Allele}},
journal = {PLOS Genetics},
year = {2012},
volume = {8},
number = {8},
pages = {e1002917},
month = aug
}
@article{DIRIENZO:1994uq,
author = {DIRIENZO, A and PETERSON, AC and GARZA, JC and GARZA, JC and VALDES, AM and VALDES, AM and Slatkin, M and Slatkin, M and FREIMER, NB and FREIMER, NB},
title = {{Mutational Processes of Simple-Sequence Repeat Loci in Human-Populations}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1994},
volume = {91},
number = {8},
pages = {3166--3170}
}
@article{Cagliani:2008gc,
author = {Cagliani, Rachele and Fumagalli, Matteo and Riva, Stefania and Pozzoli, Uberto and Comi, Giacomo P and Menozzi, Giorgia and Bresolin, Nereo and Sironi, Manuela},
title = {{The signature of long-standing balancing selection at the human defensin $\beta$-1 promoter}},
journal = {Genome Biology},
year = {2008},
volume = {9},
number = {9},
pages = {R143}
}
@article{Tracy:2001td,
author = {Tracy, RL and Walsberg, GE},
title = {{Intraspecific variation in water loss in a desert rodent, \textit{Dipodomys} \textit{merriami}}},
journal = {Ecology},
year = {2001},
volume = {82},
number = {4},
pages = {1130--1137}
}
@article{Ratan:2010hc,
author = {Ratan, Aakrosh and Zhang, Yu and Hayes, Vanessa M and Schuster, Stephan C and Miller, Webb},
title = {{Calling SNPs without a reference sequence}},
journal = {BMC Bioinformatics},
year = {2010},
volume = {11},
number = {1},
pages = {130}
}
@article{Singhal:2011dl,
author = {Singhal, Sonal and Moritz, Craig},
title = {{STRONG SELECTION AGAINST HYBRIDS MAINTAINS A NARROW CONTACT ZONE BETWEEN MORPHOLOGICALLY CRYPTIC LINEAGES IN A RAINFOREST LIZARD}},
journal = {Evolution},
year = {2011},
pages = {no--no},
month = dec
}
@article{Arnqvist:1998to,
author = {Arnqvist, G},
title = {{Comparative evidence for the evolution of genitalia by sexual selection}},
journal = {Nature},
year = {1998},
volume = {393},
number = {6687},
pages = {784--786}
}
@article{Bakewell:2007eq,
author = {Bakewell, M A and Shi, P and Zhang, J},
title = {{More genes underwent positive selection in chimpanzee evolution than in human evolution}},
journal = {Proceedings of the National Academy of Sciences},
year = {2007},
volume = {104},
number = {18},
pages = {7489--7494},
month = apr
}
@article{Briggs:2009ug,
author = {Briggs, Jennifer S and Wall, Stephen B Vander and Jenkins, Stephen H},
title = {{Forest rodents provide directed dispersal of Jeffrey pine seeds}},
journal = {Ecology},
year = {2009},
volume = {90},
number = {3},
pages = {675--687}
}
@article{Shamble:2009cb,
author = {Shamble, P S and Wilgers, D J and Swoboda, K A and Hebets, E A},
title = {{Courtship effort is a better predictor of mating success than ornamentation for male wolf spiders}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {6},
pages = {1242--1251},
month = nov
}
@article{Wall:2009fo,
author = {Wall, J D and Lohmueller, K E and Plagnol, V},
title = {{Detecting Ancient Admixture and Estimating Demographic Parameters in Multiple Human Populations}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {8},
pages = {1823--1827},
month = jul
}
@article{Schilman:2008if,
author = {Schilman, Pablo E. and Schilman, Pablo E. and Kaiser, Alexander and Kaiser, Alexander and Lighton, John R. B. and Lighton, John R. B.},
title = {{Breathe softly, beetle: Continuous gas exchange, water loss and the role of the subelytral space in the tenebrionid beetle, Eleodes obscura}},
journal = {Journal of Insect Physiology},
year = {2008},
volume = {54},
number = {1},
pages = {192--203}
}
@article{RichterBoix:2011hx,
author = {Richter-Boix, Alex and Richter-Boix, Alex and Quintela, Mar{\'\i}a and Quintela, Mar{\'\i}a and Segelbacher, Gernot and Laurila, Anssi and Laurila, Anssi},
title = {{Genetic analysis of differentiation among breeding ponds reveals a candidate gene for local adaptation in Rana arvalis}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {8},
pages = {1582--1600}
}
@article{CROWLEY:1991vh,
author = {CROWLEY, PH and TRAVERS, SE and LINTON, MC and COHN, SL and Sih, A and SARGENT, RC},
title = {{MATE DENSITY, PREDATION RISK, AND THE SEASONAL SEQUENCE OF MATE CHOICES - A DYNAMIC GAME}},
journal = {The American Naturalist},
year = {1991},
volume = {137},
number = {4},
pages = {567--596}
}
@article{VanNimwegen:2008wi,
author = {VanNimwegen, Ron E and Kretzer, Justin and Cully, Jack F},
title = {{ECOSYSTEM ENGINEERING BY A COLONIAL MAMMAL: HOW PRAIRIE DOGS STRUCTURE RODENT COMMUNITIES}},
journal = {Ecology},
year = {2008},
volume = {89},
number = {12},
pages = {3298--3305}
}
@article{Reeder:2006daa,
author = {Reeder, Serena A and Carroll, Darin S and Edwards, Cody W and Kilpatrick, C William and Bradley, Robert D},
title = {{Neotomine{\textendash}peromyscine rodent systematics based on combined analyses of nuclear and mitochondrial DNA sequences}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2006},
volume = {40},
number = {1},
pages = {251--258},
month = jul
}
@article{Dube:2007jl,
author = {Dube, E and Chan, P T K and Hermo, L and Cyr, D G},
title = {{Gene Expression Profiling and Its Relevance to the Blood-Epididymal Barrier in the Human Epididymis}},
journal = {Biology of Reproduction},
year = {2007},
volume = {76},
number = {6},
pages = {1034--1044},
month = may
}
@article{Traulsen:2009ed,
author = {Traulsen, Arne},
title = {{MATHEMATICS OF KIN- AND GROUP-SELECTION: FORMALLY EQUIVALENT?}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {2},
pages = {316--323},
month = feb
}
@article{Hyde:2008ej,
author = {Hyde, J R and Kimbrell, C and Robertson, L and Clifford, K and Lynn, E and Vetter, R},
title = {{Multiple paternity and maintenance of genetic diversity in the live-bearing rockfishes Sebastes spp.}},
journal = {Marine Ecology Progress Series},
year = {2008},
volume = {357},
pages = {245--253},
month = apr,
annote = {high genetic diversity despite multiple mating}
}
@article{Gerbault:2009et,
author = {Gerbault, Pascale and Moret, C{\'e}line and Currat, Mathias and Sanchez-Mazas, Alicia and O'rourke, Dennis},
title = {{Impact of Selection and Demography on the Diffusion of Lactase Persistence}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6369},
month = jul
}
@article{Rizkalla:2009cw,
author = {Rizkalla, Carol E and Moore, Jeffrey E and Swihart, Robert K},
title = {{Modeling patch occupancy: Relative performance of ecologically scaled landscape indices}},
journal = {Landscape Ecology},
year = {2008},
volume = {24},
number = {1},
pages = {77--88},
month = oct
}
@article{Lance:2009is,
author = {Lance, S L and Lance, S L and Tuberville, T D and Tuberville, T D and Dueck, L and Dueck, L and Holz-Schietinger, C and Holz-Schietinger, C and Trosclair, P L III and Trosclair, P L III and Elsey, R M and Elsey, R M and Glenn, T C},
title = {{Multiyear multiple paternity and mate fidelity in the American alligator, Alligator mississippiensis}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {21},
pages = {4508--4520},
month = nov
}
@article{Innocenti:2010ke,
author = {Innocenti, Paolo and Morrow, Edward H},
title = {{The Sexually Antagonistic Genes of \textit{Drosophila} \textit{melanogaster}}},
journal = {PLOS Biology},
year = {2010},
volume = {8},
number = {3},
pages = {e1000335},
month = mar
}
@article{Anonymous:X1-SwRTd,
title = {{Deltamethrin resistance in the codling moth (Lepidoptera: Tortricidae): inheritance and number of genes involved}},
year = {2010},
pages = {1--8},
month = nov
}
@article{Ozgul:2009hk,
author = {Ozgul, A and Tuljapurkar, S and Benton, T G and PEMBERTON, J M and Clutton-Brock, T H and Coulson, T},
title = {{The Dynamics of Phenotypic Change and the Shrinking Sheep of St. Kilda}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5939},
pages = {464--467},
month = jul
}
@article{Schradin:2009jf,
author = {Schradin, Carsten and Scantlebury, Michael and Pillay, Neville and K{\"o}nig, Barbara},
title = {{Testosterone Levels in Dominant Sociable Males Are Lower than in Solitary Roamers: Physiological Differences between Three Male Reproductive Tactics in a Sociably Flexible Mammal}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {3},
pages = {376--388},
month = mar
}
@article{Burns:2008dj,
author = {Burns, Catherine E and Grear, Jason S},
title = {{Effects of habitat loss on populations of white-footed mice: testing matrix model predictions with landscape-scale perturbation experiments}},
journal = {Landscape Ecology},
year = {2008},
volume = {23},
number = {7},
pages = {817--831},
month = jul
}
@article{Jonsson:2012dh,
author = {Jonsson, Knud A. and Jonsson, Knud A. and Fabre, Pierre-Henri and Fabre, Pierre-Henri and Fritz, Susanne A. and Fritz, Susanne A. and Etienne, Rampal S and Ricklefs, Robert E and Jorgensen, Tobias B. and Jorgensen, Tobias B. and Fjeldsa, Jon and Fjeldsa, Jon and Rahbek, Carsten and Rahbek, Carsten and Ericson, Per G P and Woog, Friederike and Woog, Friederike and Pasquet, Eric and Pasquet, Eric and Irestedt, Martin and Irestedt, Martin},
title = {{Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {17},
pages = {6620--6625}
}
@article{Ayari:2011gn,
author = {Ayari, Cherifa and Ayari, Cherifa and Bergeron, Alain and Bergeron, Alain and LaRue, Helene and LaRue, Helene and Menard, Claire and Menard, Claire and Fradet, Yves and Fradet, Yves},
title = {{Toll-Like Receptors in Normal and Malignant Human Bladders}},
journal = {Journal of Urology},
year = {2011},
volume = {185},
number = {5},
pages = {1915--1921}
}
@article{Kelt:1999tc,
author = {Kelt, DA},
title = {{On the relative importance of history and ecology in structuring communities of desert small animals}},
journal = {Ecography},
year = {1999},
volume = {22},
number = {2},
pages = {123--137}
}
@article{Stevens:2009vm,
author = {Stevens, Richard},
title = {{MICRO- AND MACROHABITAT ASSOCIATIONS IN MOJAVE DESERT RODENT COMMUNITIES }},
journal = {Journal of Mammalogy},
year = {2009},
pages = {1--16},
month = mar
}
@article{Weaver:2009jd,
author = {Weaver, Jamie R and Susiarjo, Martha and Bartolomei, Marisa S},
title = {{Imprinting and epigenetic changes in the early embryo}},
journal = {Mammalian Genome},
year = {2009},
volume = {20},
number = {9-10},
pages = {532--543},
month = sep
}
@article{Hu:2011cn,
author = {Hu, M and Hu, M and Zhu, Y and Zhu, Y and Taylor, J M G and Taylor, J M G and Liu, J S and Liu, J S and Qin, Z S and Qin, Z S},
title = {{Using Poisson mixed-effects model to quantify transcript-level gene expression in RNA-Seq}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {28},
number = {1},
pages = {63--68},
month = dec
}
@article{Sharkey:2007be,
author = {Sharkey, D J and Macpherson, A M and Tremellen, K P and Robertson, S A},
title = {{Seminal plasma differentially regulates inflammatory cytokine gene expression in human cervical and vaginal epithelial cells}},
journal = {Molecular Human Reproduction},
year = {2007},
volume = {13},
number = {7},
pages = {491--501},
month = may
}
@article{Francis:2013gc,
author = {Francis, Warren R and Christianson, Lynne M and Kiko, Rainer and Powers, Meghan L and Shaner, Nathan C and D Haddock, Steven H},
title = {{A comparison across non-model animals suggests an optimal sequencing depth for \textit{de novo} transcriptome assembly.}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
pages = {167}
}
@article{Bahr:2012fv,
author = {Bahr, A and Sommer, S and Mattle, B and Wilson, A B},
title = {{Mutual mate choice in the potbellied seahorse (\textit{Hippocampus abdominalis})}},
journal = {Behavioral Ecology},
year = {2012},
volume = {23},
number = {4},
pages = {869--878},
month = jun
}
@article{Puurtinen:2005hz,
author = {Puurtinen, M and Ketola, T and Kotiaho, J},
title = {{Genetic compatibility and sexual selection}},
journal = {Trends In Ecology {\&} Evolution},
year = {2005},
volume = {20},
number = {4},
pages = {157--158},
month = apr
}
@article{Hammond:2006up,
author = {Hammond, RL and Bruford, MW and Bourke, AFG},
title = {{A test of reproductive skew models in a field population of a multiple-queen ant}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {61},
number = {2},
pages = {265--275}
}
@article{Moore:2012ir,
author = {Moore, J},
title = {{An overview of parasite-induced behavioral alterations - and some lessons from bats}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {11--17},
month = dec
}
@article{Ferguson:2004we,
author = {Ferguson, SH and Lariviere, S},
title = {{Are long penis bones an adaption to high latitude snowy environments?}},
journal = {Oikos},
year = {2004},
volume = {105},
number = {2},
pages = {255--267}
}
@article{Dottorini:2007bc,
author = {Dottorini, T and Nicolaides, L and Ranson, H and Rogers, D W and Crisanti, A and Catteruccia, F},
title = {{A genome-wide analysis in Anopheles gambiae mosquitoes reveals 46 male accessory gland genes, possible modulators of female behavior}},
journal = {Proceedings of the National Academy of Sciences},
year = {2007},
volume = {104},
number = {41},
pages = {16215--16220},
month = oct
}
@article{Pigliucci:2008jd,
author = {Pigliucci, Massimo},
title = {{Weighing the evidence in evolutionary biology}},
journal = {Trends In Ecology {\&} Evolution},
year = {2008},
volume = {23},
number = {12},
pages = {662--663},
month = dec
}
@article{Tsui:2010iz,
author = {Tsui, Dana W Y and Lam, Y M Doris and Lee, Wing S and Leung, Tak Y and Lau, Tze K and Lau, Elizabeth T and Tang, Mary H Y and Akolekar, Ranjit and Nicolaides, Kypros H and Chiu, Rossa W K and Lo, Y M Dennis and Chim, Stephen S C},
title = {{Systematic Identification of Placental Epigenetic Signatures for the Noninvasive Prenatal Detection of Edwards Syndrome}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {11},
pages = {e15069},
month = nov
}
@article{Anonymous:r597Fd0r,
title = {{Regulation of fluid and electrolyte balanceby the kidney}},
year = {2006},
pages = {1--7},
month = jun
}
@article{Duval:2007wv,
author = {Duval, Emily H},
title = {{Adaptive advantages of cooperative courtship for subordinate male lance-tailed manakins}},
journal = {The American Naturalist},
year = {2007},
volume = {169},
number = {4},
pages = {423--432}
}
@article{Shepard:2009fa,
author = {Shepard, Donald B and Burbrink, Frank T},
title = {{Phylogeographic and demographic effects of Pleistocene climatic fluctuations in a montane salamander, Plethodon fourchensis}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {10},
pages = {2243--2262},
month = may
}
@article{Blow:2010bu,
author = {Blow, Matthew J and McCulley, David J and Li, Zirong and Li, Zirong and Zhang, Tao and Zhang, Tao and Akiyama, Jennifer A and Holt, Amy and Plajzer-Frick, Ingrid and Shoukry, Malak and Wright, Crystal and Chen, Feng and Chen, Feng and Afzal, Veena and Bristow, James and Ren, Bing and Ren, Bing and Black, Brian L and Rubin, Edward M and Visel, Axel and Pennacchio, Len A},
title = {{ChIP-Seq identification of weakly conserved heart enhancers.}},
journal = {Nature Genetics},
year = {2010},
volume = {42},
number = {9},
pages = {806--810},
month = sep
}
@article{Haesler:2004jb,
author = {Haesler, S and Haesler, S and Wada, K and Wada, K and Nshdejan, A and Nshdejan, A and Morrisey, EE and Morrisey, EE and Lints, T and Lints, T and Jarvis, ED and Jarvis, ED and Scharff, C and Scharff, C},
title = {{FoxP2 expression in avian vocal learners and non-learners}},
journal = {Journal of Neuroscience},
year = {2004},
volume = {24},
number = {13},
pages = {3164--3175}
}
@article{Berlin:2006era,
author = {Berlin, Sofia and Brandstr{\"o}m, Mikael and Backstr{\"o}m, Niclas and Axelsson, Erik and Smith, Nick G C and Ellegren, Hans},
title = {{Substitution Rate Heterogeneity and the Male Mutation Bias}},
journal = {Journal of Molecular Evolution},
year = {2006},
volume = {62},
number = {2},
pages = {226--233},
month = feb
}
@article{AlHashimi:2010es,
author = {Al-Hashimi, N and Lafont, A G and Delgado, S and Kawasaki, K and Sire, J Y},
title = {{The Enamelin Genes in Lizard, Crocodile, and Frog and the Pseudogene in the Chicken Provide New Insights on Enamelin Evolution in Tetrapods}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {9},
pages = {2078--2094},
month = aug
}
@article{MeyerLucht:2005ug,
author = {Meyer-Lucht, Y and Sommer, S},
title = {{MHC diversity and the association to nematode parasitism in the yellow-necked mouse (\emph{Apodemus flavicollis})}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {7},
pages = {2233--2243}
}
@article{Higginson:2012ie,
author = {Higginson, Dawn M and Miller, Kelly B and Miller, Kelly B and Segraves, Kari A and Segraves, Kari A and Pitnick, Scott},
title = {{Female reproductive tract form drives the evolution of complex sperm morphology.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {12},
pages = {4538--4543},
month = mar
}
@article{Harano:2006ih,
author = {Harano, Tomohiro and Yasui, Yukio and Miyatake, Takahisa},
title = {{Direct effects of polyandry on female fitness in Callosobruchus chinensis}},
journal = {Animal Behaviour},
year = {2006},
volume = {71},
number = {3},
pages = {539--548},
month = mar
}
@article{Storz:1999vj,
author = {Storz, Jay F},
title = {{Genetic consequences of mammalian social structure}},
journal = {Journal of Mammalogy},
year = {1999},
volume = {80},
number = {2},
pages = {553--569},
annote = {polygynous mating and socially mediated constraints on gene flow have been proposed to
foster random genetic differentiation among social groups, thereby accelerating rates of
evolutionary changes}
}
@article{Ackermann:2013ge,
author = {Ackermann, Marit and Ackermann, Marit and Sikora-Wohlfeld, Weronika and Sikora-Wohlfeld, Weronika and Beyer, andreas and Beyer, andreas},
title = {{Impact of Natural Genetic Variation on Gene Expression Dynamics}},
journal = {PLOS Genetics},
year = {2013},
volume = {9},
number = {6},
pages = {e1003514},
month = jun
}
@article{Byers:1997vk,
author = {Byers, JA},
title = {{Mortality risk to young pronghorns from handling}},
journal = {Journal of Mammalogy},
year = {1997},
volume = {78},
number = {3},
pages = {894--899}
}
@article{Anonymous:xhvZqMuq,
author = {Schrier, R W and Cadnapaphornchai, M A},
title = {{Renal aquaporin water channels: from molecules to human disease}},
journal = {Progress in biophysics and molecular {\ldots}},
year = {2003}
}
@article{Penades:2007hi,
author = {Penad{\'e}s, Gustau Calabuig},
title = {{Female lesser kestrel (falco naumanni) also accepts extra-pair copulation}},
journal = {Journal of Ornithology},
year = {2007},
volume = {148},
number = {4},
pages = {563--564},
month = jul
}
@article{Lindberg:2009if,
author = {Lindberg, Johan and Lundeberg, Joakim},
title = {{The plasticity of the mammalian transcriptome}},
journal = {Genomics},
year = {2010},
volume = {95},
number = {1},
pages = {1--6},
month = jan
}
@article{Kocher:2013cp,
author = {Kocher, Sarah D and Li, Cai and Yang, Wei and Tan, Hao and Yi, Soojin V and Yang, Xingyu and Hoekstra, Hopi E and Zhang, Guojie and Pierce, Naomi E and Yu, Douglas W},
title = {{The draft genome of a socially polymorphic halictid bee, Lasioglossum albipes}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {12},
pages = {R142}
}
@article{Li:2010ji,
author = {Li, Guoliang and Ma, Jian and Zhang, Louxin},
title = {{Greedy Selection of Species for Ancestral State Reconstruction on Phylogenies: Elimination Is Better than Insertion}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {2},
pages = {e8985},
month = feb
}
@article{Vitalis:2001ug,
author = {Vitalis, R and Couvet, D},
title = {{Estimation of effective population size and migration rate from one- and two-locus identity measures}},
journal = {Genetics},
year = {2001},
volume = {157},
number = {2},
pages = {911--925}
}
@article{BLYTON:2011gn,
author = {BLYTON, MICHAELA D J and BANKS, SAM C and Peakall, Rod and LINDENMAYER, DAVID B},
title = {{Using probability modelling and genetic parentage assignment to test the role of local mate availability in mating system variation}},
journal = {Molecular Ecology},
year = {2011},
pages = {no--no},
month = sep
}
@article{Burger:2011gh,
author = {Burger, Joseph R and Chesh, Adrian S and Mu{\~n}oz, Pamela and Fredes, Fernando and Ebensperger, Luis A and Hayes, Loren D},
title = {{Sociality, exotic ectoparasites, and fitness in the plural breeding rodent Octodon degus}},
journal = {Behavioral Ecology and Sociobiology},
year = {2011},
month = sep
}
@article{vanDijk:2014fe,
author = {van Dijk, Erwin L and Jaszczyszyn, Yan and Thermes, Claude},
title = {{Author's Accepted Manuscript}},
journal = {Experimental Cell Research},
year = {2014},
pages = {1--23},
month = jan
}
@article{Nunn:2011ec,
author = {Nunn, Charles L and Nunn, Charles L and Thrall, Peter H and Thrall, Peter H and Leendertz, Fabian H and Leendertz, Fabian H and Boesch, Christophe and Boesch, Christophe},
title = {{The spread of fecally transmitted parasites in socially-structured populations.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {6},
pages = {e21677}
}
@article{Zhou:2011cq,
author = {Zhou, R and Zhou, R and Ling, S and Ling, S and Zhao, W and Zhao, W and Osada, N and Osada, N and Chen, S and Chen, S and Zhang, M and Zhang, M and He, Z and He, Z and Bao, H and Bao, H and Zhong, C and Zhong, C and Zhang, B and Zhang, B and Lu, X and Lu, X and Turissini, D and Turissini, D and Duke, N C and Duke, N C and Lu, J and Lu, J and Shi, S and Shi, S and Wu, C I and Wu, C I},
title = {{Population Genetics in Nonmodel Organisms: II. Natural Selection in Marginal Habitats Revealed by Deep Sequencing on Dual Platforms}},
journal = {Molecular Biology and Evolution},
year = {2011},
volume = {28},
number = {10},
pages = {2833--2842},
month = sep
}
@article{Łopuch:2009gp,
author = {{\L}opuch, Sylwia and Radwan, Jacek},
title = {{Condition dependence of sexual attractiveness in the bank vole}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {63},
number = {3},
pages = {339--344},
month = oct
}
@article{Linzey:2012bo,
author = {Linzey, Alicia V and Linzey, Alicia V and Reed, Aaron W and Reed, Aaron W and Slade, Norman A and Kesner, Michael H and Kesner, Michael H},
title = {{Effects of habitat disturbance on a \textit{Peromyscus} leucopus (Rodentia: Cricetidae) population in western Pennsylvania}},
journal = {Journal of Mammalogy},
year = {2012},
volume = {93},
number = {1},
pages = {211--219},
month = feb
}
@article{Goldstein:2003iz,
author = {Goldstein, Paul Z and DeSalle, Rob},
title = {{Calibrating phylogenetic species formation in a threatened insect using DNA from historical specimens}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {7},
pages = {1993--1998},
month = jul
}
@article{OliveiraNeto:2007dd,
author = {Oliveira-Neto, Jose F and Pie, Marcio R and Boeger, Walter A and Ostrensky, Antonio and Baggio, Rafael A},
title = {{Population genetics and evolutionary demography of Ucides cordatus (Decapoda: Ocypodidae)}},
journal = {Marine Ecology},
year = {2007},
volume = {28},
number = {4},
pages = {460--469},
month = dec
}
@article{Magrath:2003cu,
author = {Magrath, Michael J L and Komdeur, Jan},
title = {{Is male care compromised by additional mating opportunity?}},
journal = {Trends In Ecology {\&} Evolution},
year = {2003},
volume = {18},
number = {8},
pages = {424--430},
month = aug
}
@article{Wang:2009hb,
author = {Wang, L and Feng, Z and Wang, X and Zhang, X},
title = {{DEGseq: an R package for identifying differentially expressed genes from RNA-seq data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {26},
number = {1},
pages = {136--138},
month = dec
}
@article{Reale:2009kn,
author = {R{\'e}ale, D and Martin, J and Coltman, D W and Poissant, J and Festa-Bianchet, M},
title = {{Male personality, life-history strategies and reproductive success in a promiscuous mammal}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {8},
pages = {1599--1607},
month = aug
}
@article{Schmoll:2003ke,
author = {Schmoll, T and Dietrich, V and Winkel, W and Epplen, J T and Lubjuhn, T},
title = {{Long-term fitness consequences of female extra-pair matings in a socially monogamous passerine}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2003},
volume = {270},
number = {1512},
pages = {259--264},
month = feb
}
@article{Higuchi:2011ee,
author = {Higuchi, Fumihiro and Higuchi, Fumihiro and Uchida, Shusaku and Uchida, Shusaku and Yamagata, Hirotaka and Yamagata, Hirotaka and Otsuki, Koji and Otsuki, Koji and Hobara, Teruyuki and Hobara, Teruyuki and Abe, Naoko and Abe, Naoko and Shibata, Tomohiko and Shibata, Tomohiko and Watanabe, Yoshifumi and Watanabe, Yoshifumi},
title = {{State-dependent changes in the expression of DNA methyltransferases in mood disorder patients.}},
journal = {Journal of psychiatric research},
year = {2011},
month = may
}
@article{CameronMacmillan:2006kh,
author = {Cameron-Macmillan, M L and Walsh, C J and Wilhelm, S I and Storey, A E},
title = {{Male chicks are more costly to rear than females in a monogamous seabird, the Common Murre}},
journal = {Behavioral Ecology},
year = {2006},
volume = {18},
number = {1},
pages = {81--85},
month = sep
}
@article{Polihronakis:2010bh,
author = {Polihronakis, Maxi and Polihronakis, Maxi},
title = {{The interface between phylogenetics and population genetics: investigating gene trees, species trees, and population dynamics in the Phyllophaga fraterna species group.}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {4},
pages = {1048--1062},
month = apr
}
@article{Sobrinho:2012du,
author = {Sobrinho, Iderval S and de Brito, Reinaldo A},
title = {{Positive and Purifying Selection Influence the Evolution of Doublesex in the Anastrepha fraterculus Species Group}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {3},
pages = {e33446},
month = mar
}
@article{Griffith:2002ww,
author = {Griffith, SC and Owens, IPF and Thuman, KA},
title = {{Extra pair paternity in birds: a review of interspecific variation and adaptive function}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {11},
pages = {2195--2212}
}
@article{Sunamura:2009kj,
author = {Sunamura, E and Espadaler, X and Sakamoto, H and Suzuki, S and Terayama, M and Tatsuki, S},
title = {{Intercontinental union of Argentine ants: behavioral relationships among introduced populations in Europe, North America, and Asia}},
journal = {Insectes Sociaux},
year = {2009},
volume = {56},
number = {2},
pages = {143--147},
month = mar
}
@article{Chen:2011fs,
author = {Chen, F S and Chen, F S and Kumsta, R and Kumsta, R and von Dawans, B and von Dawans, B and Monakhov, M and Monakhov, M and Ebstein, R P and Ebstein, R P and Heinrichs, M and Heinrichs, M},
title = {{Common oxytocin receptor gene (OXTR) polymorphism and social support interact to reduce stress in humans}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
month = nov
}
@article{Waples:2009kf,
author = {Waples, Robin S and Faulkner, James R and Faulkner, James R},
title = {{Modelling evolutionary processes in small populations: not as ideal as you think.}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {9},
pages = {1834--1847},
month = may
}
@article{Kasowski:2010hx,
author = {Kasowski, M and Grubert, F and Heffelfinger, C and Hariharan, M and Asabere, A and Waszak, S M and Habegger, L and Rozowsky, J and Shi, M and Urban, A E and Hong, M Y and Karczewski, K J and Huber, W and Weissman, S M and Gerstein, M.B. and Korbel, J O and Snyder, M},
title = {{Variation in Transcription Factor Binding Among Humans}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5975},
pages = {232--235},
month = apr
}
@article{Huang:2008bt,
author = {Huang, S and Yuan, S and Guo, L and Yu, Y and Li, J and Wu, T and Liu, T and Yang, M and Wu, K and Liu, H and Ge, J and Huang, H and Dong, M and Yu, C and Chen, S and Xu, A},
title = {{Genomic analysis of the immune gene repertoire of amphioxus reveals extraordinary innate complexity and diversity}},
journal = {Genome Research},
year = {2008},
volume = {18},
number = {7},
pages = {1112--1126},
month = jul
}
@article{Tourmente:2009ek,
author = {Tourmente, Maximiliano and Gomendio, Montserrat and Roldan, Eduardo R S and Giojalas, Laura C and Chiaraviglio, Margarita},
title = {{SPERM COMPETITION AND REPRODUCTIVE MODE INFLUENCE SPERM DIMENSIONS AND STRUCTURE AMONG SNAKES}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {10},
pages = {2513--2524},
month = oct
}
@article{Anonymous:0ChZga2D,
title = {{Ethology 1998 Keil}},
year = {2002},
pages = {6},
month = feb
}
@article{Anonymous:QCoZEzW1,
title = {{1307.7933-2}},
year = {2013},
pages = {1--15},
month = nov
}
@article{Fanelli:2009gc,
author = {Fanelli, Daniele and Tregenza, Tom},
title = {{How Many Scientists Fabricate and Falsify Research? A Systematic Review and Meta-Analysis of Survey Data}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {5},
pages = {e5738},
month = may
}
@article{Young:2005js,
author = {Young, andrew J and Carlson, Anne A and Clutton-Brock, Tim},
title = {{Trade-offs between extraterritorial prospecting and helping in a cooperative mammal}},
journal = {Animal Behaviour},
year = {2005},
volume = {70},
number = {4},
pages = {829--837},
month = oct
}
@article{Rousset:2008kg,
author = {Rousset, Francois and Rousset, Francois},
title = {{GENEPOP ' 007: a complete re-implementation of the GENEPOP software for Windows and Linux}},
journal = {Molecular Ecology Resources},
year = {2008},
volume = {8},
number = {1},
pages = {103--106}
}
@article{Tzur:2010dm,
author = {Tzur, Shay and Rosset, Saharon and Shemer, Revital and Yudkovsky, Guennady and Selig, Sara and Tarekegn, Ayele and Bekele, Endashaw and Bradman, Neil and Wasser, Walter G and Behar, Doron M and Skorecki, Karl},
title = {{Missense mutations in the APOL1 gene are highly associated with end stage kidney disease risk previously attributed to the MYH9 gene}},
journal = {Human Genetics},
year = {2010},
volume = {128},
number = {3},
pages = {345--350},
month = jul
}
@article{Croft:te,
author = {Croft, DP and Edenbrow, M and Darden, SK},
title = {{Effect of gyrodactylid ectoparasites on host behaviour and social network structure in guppies Poecilia reticulata}},
journal = {Behavioral Ecology and {\ldots}}
}
@article{Liebgold:2006ib,
author = {Liebgold, Eric B and Cabe, Paul R and Jaeger, Robert G and Leberg, Paul L},
title = {{Multiple paternity in a salamander with socially monogamous behaviour.}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {13},
pages = {4153--4160},
month = nov
}
@article{Pepperell:2013cq,
author = {Pepperell, Caitlin S and Casto, Amanda M and Kitchen, andrew and Granka, Julie M and Cornejo, Omar E and Holmes, Eddie C and Birren, Bruce and Galagan, James and Feldman, Marcus W},
title = {{The Role of Selection in Shaping Diversity of Natural M. tuberculosis Populations}},
journal = {PLOS pathogens},
year = {2013},
volume = {9},
number = {8},
pages = {e1003543},
month = aug
}
@article{Hildebrand:2012kt,
author = {Hildebrand, Falk and Hildebrand, Falk and Ebersbach, Tine and Ebersbach, Tine and Nielsen, Henrik Bj rn and Nielsen, Henrik Bj rn and Li, Xiaoping and Li, Xiaoping and Sonne, Si Brask and Sonne, Si Brask and Bertalan, Marcelo and Bertalan, Marcelo and Dimitrov, Peter and Dimitrov, Peter and Madsen, Lise and Madsen, Lise and Qin, Junjie and Qin, Junjie and Wang, Jun and Raes, Jeroen and Raes, Jeroen and Kristiansen, Karsten and Licht, Tine Rask and Licht, Tine Rask},
title = {{A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens)}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {1--1},
month = sep
}
@article{Anonymous:7XpWlK-x,
title = {{Introduction to High Performance Scientific Computing}},
year = {2013},
pages = {1--482},
month = aug
}
@article{Schattner:2009co,
author = {Schattner, Peter},
title = {{Genomics made easier: An introductory tutorial to genome datamining}},
journal = {Genomics},
year = {2009},
volume = {93},
number = {3},
pages = {187--195},
month = mar
}
@article{Harris:2009jb,
author = {Harris, T R and Caillaud, D and Chapman, C A and Vigilant, L},
title = {{Neither genetic nor observational data alone are sufficient for understanding sex-biased dispersal in a social-group-living species}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {8},
pages = {1777--1790},
month = apr
}
@article{Dols:2011ct,
author = {Dols, J A M and Dols, J A M and Smit, P W and Smit, P W and Kort, R and Kort, R and Reid, G and Reid, G and Schuren, F H J and Schuren, F H J and Tempelman, H and Tempelman, H and Bontekoe, T R and Bontekoe, T R and Korporaal, H and Korporaal, H and Boon, M E and Boon, M E},
title = {{Microarray-based identification of clinically relevant vaginal bacteria in relation to bacterial vaginosis}},
journal = {YMOB},
year = {2011},
volume = {204},
number = {4},
pages = {305.e1--305.e7},
month = apr
}
@article{Zhang:2013bf,
author = {Zhang, Chengjun and Zhang, Chengjun and Wang, Jun and Long, Manyuan and Long, Manyuan and Fan, Chuanzhu and Fan, Chuanzhu},
title = {{gKaKs: the pipeline for genome-level Ka/Ks calculation.}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {5},
pages = {645--646},
month = mar
}
@article{GouyDeBellocq:2010kn,
author = {Go{\"u}y De Bellocq, Jo{\"e}lle and Leirs, Herwig},
title = {{Polymorphism and signatures of selection in the multimammate rat DQB gene}},
journal = {Immunogenetics},
year = {2009},
volume = {62},
number = {1},
pages = {59--64},
month = dec
}
@article{Ezenwa:2004fm,
author = {Ezenwa, V O},
title = {{Host social behavior and parasitic infection: a multifactorial approach}},
journal = {Behavioral Ecology},
year = {2004},
volume = {15},
number = {3},
pages = {446--454},
month = may
}
@article{Ryan:2003eo,
author = {Ryan, Karen Koeninger and Lacy, Robert C},
title = {{Monogamous male mice bias behaviour towards females according to very small differences in kinship}},
journal = {Animal Behaviour},
year = {2003},
volume = {65},
number = {2},
pages = {379--384},
month = feb
}
@inproceedings{Rosenblum:2013bk,
author = {Rosenblum, E B and James, T Y},
title = {{Complex history of the amphibian-killing chytrid fungus revealed with genome resequencing data}},
booktitle = {Proceedings of the {\ldots}},
year = {2013}
}
@article{Kellner:2007bv,
author = {Kellner, K and Trindl, A and Heinze, J and D'Ettorre, P},
title = {{Polygyny and polyandry in small ant societies}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {11},
pages = {2363--2369}
}
@article{Hall:2008ft,
author = {Hall, Michelle L and Peters, Anne},
title = {{Coordination between the sexes for territorial defence in a duetting fairy-wren}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {1},
pages = {65--73},
month = jul
}
@article{Teets:2012em,
author = {Teets, Nicholas M and Kawarasaki, Yuta and Lee Jr, Richard E and Denlinger, David L},
title = {{Journal of Insect Physiology}},
journal = {Journal of Insect Physiology},
year = {2012},
volume = {58},
number = {4},
pages = {498--505},
month = apr
}
@article{Durban:2011db,
author = {Durban, Ana and Abellan, Juan J and Jimenez-Hernandez, Nuria and Ponce, Marta and Ponce, Julio and Sala, Teresa and D'Auria, Giuseppe and Latorre, Amparo and Moya, andres},
title = {{Assessing Gut Microbial Diversity from Feces and Rectal Mucosa}},
journal = {Microbial Ecology},
year = {2010},
volume = {61},
number = {1},
pages = {123--133},
month = aug
}
@article{Blaney:2000va,
author = {Blaney, CE and Blaney, CE and Dawson, TJ and Dawson, TJ and McCarron, HCK and McCarron, HCK and Buffenstein, R and Buffenstein, R and Krockenberger, AK and Krockenberger, AK},
title = {{Water metabolism and renal function and structure in eastern grey kangaroos (Macropus giganteus): responses to water deprivation}},
journal = {Australian Journal of Zoology},
year = {2000},
volume = {48},
number = {4},
pages = {335--345}
}
@article{Chandler:2012jv,
author = {Chandler, Christopher H and Chandler, Christopher H and ofria, Charles and ofria, Charles and Dworkin, Ian and Dworkin, Ian},
title = {{RUNAWAY SEXUAL SELECTION LEADS TO GOOD GENES}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = aug
}
@article{Hingorani:2009cc,
author = {Hingorani, Sangeeta and Molitoris, Bruce A and Himmelfarb, Jonathan},
title = {{Ironing Out the Pathogenesis of Acute Kidney Injury}},
journal = {American Journal of Kidney Diseases},
year = {2009},
volume = {53},
number = {4},
pages = {569--571},
month = apr
}
@article{Bouzat:1998uu,
author = {Bouzat, JL and LEWIN, HA and Paige, KN},
title = {{The ghost of genetic diversity past: Historical DNA analysis of the greater prairie chicken}},
journal = {The American Naturalist},
year = {1998},
volume = {152},
number = {1},
pages = {1--6}
}
@article{Rovito:2009dl,
author = {Rovito, S M and Parra-Olea, G and Vasquez-Almazan, C R and Papenfuss, T J and Wake, D B},
title = {{Dramatic declines in neotropical salamander populations are an important part of the global amphibian crisis}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {9},
pages = {3231--3236},
month = mar
}
@article{Hennessy:2012cj,
author = {Hennessy, Cecilia A and Hennessy, Cecilia A and Dubach, Jean and Dubach, Jean and Gehrt, Stanley D and Gehrt, Stanley D},
title = {{Long-term pair bonding and genetic evidence for monogamy among urban coyotes (Canis latrans)}},
journal = {Journal of Mammalogy},
year = {2012},
volume = {93},
number = {3},
pages = {732--742},
month = jun
}
@article{Trotter:2008eh,
author = {Trotter, M V and Spencer, H G},
title = {{The Generation and Maintenance of Genetic Variation by Frequency-Dependent Selection: Constructing Polymorphisms Under the Pairwise Interaction Model}},
journal = {Genetics},
year = {2008},
volume = {180},
number = {3},
pages = {1547--1557},
month = oct
}
@article{Excoffier:2009gf,
author = {Excoffier, L and Hofer, T and Foll, M},
title = {{Detecting loci under selection in a hierarchically structured population}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {4},
pages = {285--298},
month = jul
}
@article{Finseth:2013ic,
author = {Finseth, F R and Iacovelli, S R and HARRISON, R G and Adkins-Regan, E K},
title = {{A nonsemen copulatory fluid influences the outcome of sperm competition in Japanese quail}},
journal = {Journal of Evolutionary Biology},
year = {2013},
pages = {n/a--n/a},
month = jul
}
@article{FreemanGallant:2009bm,
author = {Freeman-Gallant, Corey R and Taff, Conor C and Morin, Douglas F and Dunn, Peter O and Whittingham, Linda A and Tsang, Susan M},
title = {{SEXUAL SELECTION, MULTIPLE MALE ORNAMENTS, AND AGE- AND CONDITION-DEPENDENT SIGNALING IN THE COMMON YELLOWTHROAT}},
journal = {Evolution},
year = {2009},
volume = {64},
number = {4},
pages = {1007--1017},
month = oct
}
@article{Krishnamurthy:2009im,
author = {Krishnamurthy, Harini and Piscitelli, Chayne L and Gouaux, Eric},
title = {{Unlocking the molecular secrets of sodium-coupled transporters}},
journal = {Nature},
year = {2009},
volume = {459},
number = {7245},
pages = {347--355},
month = may
}
@article{Charlton:2012hq,
author = {Charlton, Benjamin D and Charlton, Benjamin D and Filippi, Piera and Filippi, Piera and Fitch, W Tecumseh and Fitch, W Tecumseh},
title = {{Do Women Prefer More Complex Music around Ovulation?}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {4},
pages = {e35626}
}
@article{Maure:2012de,
author = {Maure, F and Maure, F and Daoust, S P and Daoust, S P and Brodeur, J and Brodeur, J and Mitta, G and Mitta, G and Thomas, F and Thomas, F},
title = {{Diversity and evolution of bodyguard manipulation}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {36--42},
month = dec
}
@article{Quignon:2011ct,
author = {Quignon, Pascale and Rimbault, Maud and Robin, St{\'e}phanie and Galibert, Francis},
title = {{Genetics of canine olfaction and receptor diversity}},
journal = {Mammalian Genome},
year = {2011},
month = nov
}
@article{Wolff:2002tc,
author = {Wolff, JO and Dunlap, AS},
title = {{Multi-male mating, probability of conception, and litter size in the-prairie vole (\textit{Microtus ochrogaster})}},
journal = {Behavioural Processes},
year = {2002},
volume = {58},
number = {1-2},
pages = {105--110}
}
@article{Fiumera:2007kb,
author = {Fiumera, A C and Dumont, B L and Clark, A G},
title = {{Associations Between Sperm Competition and Natural Variation in Male Reproductive Genes on the Third Chromosome of \textit{Drosophila} \textit{melanogaster}}},
journal = {Genetics},
year = {2006},
volume = {176},
number = {2},
pages = {1245--1260},
month = dec
}
@article{MartinezCruz:2007ko,
author = {Martinez-Cruz, B and Godoy, J A and Negro, J J},
title = {{Population fragmentation leads to spatial and temporal genetic structure in the endangered Spanish imperial eagle}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {3},
pages = {477--486},
month = jan
}
@article{Mares:1983wl,
author = {Mares, Michael A},
title = {{Desert rodent adaptation and community structure}},
journal = {Great Basin Naturalist Memoirs},
year = {1983},
volume = {0},
number = {7},
pages = {30--43},
month = jan
}
@article{Yakata:2011bp,
author = {Yakata, Kaya and Yakata, Kaya and Tani, Kazutoshi and Tani, Kazutoshi and Fujiyoshi, Yoshinori and Fujiyoshi, Yoshinori},
title = {{Water permeability and characterization of aquaporin-11}},
journal = {Journal of Structural Biology},
year = {2011},
volume = {174},
number = {2},
pages = {315--320}
}
@article{Christie:2010gk,
author = {Christie, Mark R},
title = {{Parentage in natural populations: novel methods to detect parent-offspring pairs in large data sets}},
journal = {Molecular Ecology Resources},
volume = {10},
number = {1},
pages = {115--128}
}
@article{Hsu:2012dg,
author = {Hsu, Ju-Chun and Chien, Ting-Ying and Hu, Chia-Cheng and Chen, Mei-Ju May and Wu, Wen-Jer and Feng, Hai-Tung and Haymer, David S and Chen, Chien-Yu},
title = {{Discovery of genes related to insecticide resistance in \textit{Bactrocera dorsalis} by functional genomic analysis of a \textit{de novo} assembled transcriptome.}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e40950}
}
@article{Sboner:2011ui,
author = {Sboner, A. and Mu, X.J. and Mu, X.J. and Greenbaum, D. and Greenbaum, D. and Auerbach, R.K. and Auerbach, R.K. and Gerstein, M.B. and Gerstein, M.B.},
title = {{The real cost of sequencing: higher than you think!}},
journal = {Genome Biology},
year = {2011},
volume = {12},
number = {8},
pages = {1--10}
}
@article{Yang:2010kv,
author = {Yang, Xiao and Yang, Xiao and Dorman, Karin S and Dorman, Karin S and Aluru, Srinivas and Aluru, Srinivas},
title = {{Reptile: representative tiling for short read error correction.}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {20},
pages = {2526--2533},
month = oct
}
@article{Nunes:2008ks,
author = {Nunes, Baltazar and Pechirra, Pedro and Coelho, Anabela and Ribeiro, Carlos and Arraiolos, Ana and Rebelo-de-andrade, Helena},
title = {{Heterogeneous Selective Pressure Acting on Influenza B Victoria- and Yamagata-Like Hemagglutinins}},
journal = {Journal of Molecular Evolution},
year = {2008},
volume = {67},
number = {4},
pages = {427--435},
month = oct
}
@article{Kosova:2009ic,
author = {Kosova, G and Abney, M and Ober, C},
title = {{Colloquium Paper: Heritability of reproductive fitness traits in a human population}},
journal = {PNAS},
year = {2010},
volume = {107},
number = {suppl_1},
pages = {1772--1778},
month = jan
}
@article{Vinkler:2009fj,
author = {Vinkler, M and Bryjov{\'a}, A and Albrecht, T and Bryja, J},
title = {{Identification of the first Toll-like receptor gene in passerine birds: TLR4 orthologue in zebra finch ( Taeniopygia guttata)}},
journal = {Tissue Antigens},
year = {2009},
volume = {74},
number = {1},
pages = {32--41},
month = jul
}
@article{Hughes:1998vb,
author = {Hughes, A L and Yeager, M},
title = {{Natural selection and the evolutionary history of major histocompatibility complex loci.}},
journal = {Frontiers in bioscience : a journal and virtual library},
year = {1998},
volume = {3},
pages = {d509--16},
month = may
}
@article{Albrechtsen:2010fz,
author = {Albrechtsen, anders and Moltke, Ida and Nielsen, Rasmus},
title = {{Natural selection and the distribution of identity-by-descent in the human genome.}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {1},
pages = {295--308},
month = sep
}
@article{Jezkova:2009uc,
author = {Jezkova},
title = {{PLEISTOCENE IMPACTS ON THE PHYLOGEOGRAPHY OF THE
DESERT POCKET MOUSE (CHAETODIPUS PENICILLATUS)
}},
journal = {Journal of Mammalogy},
year = {2009},
pages = {1--15},
month = mar
}
@article{Anisimova:2003wz,
author = {Anisimova, M and Anisimova, M and Nielsen, R and Yang, Ziheng},
title = {{Effect of recombination on the accuracy of the likelihood method for detecting positive selection at amino acid sites}},
journal = {Genetics},
year = {2003},
volume = {164},
number = {3},
pages = {1229--1236}
}
@article{Xu:2013ge,
author = {Xu, Yanjie and Xu, Yanjie and Gao, Shan and Gao, Shan and Yang, Yingjie and Yang, Yingjie and Huang, Mingyun and Huang, Mingyun and Cheng, Lina and Cheng, Lina and Wei, Qian and Wei, Qian and Fei, Zhangjun and Fei, Zhangjun and Gao, Junping and Gao, Junping and Hong, Bo and Hong, Bo},
title = {{Transcriptome sequencing and whole genome expression profiling of chrysanthemum under dehydration stress}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {662}
}
@article{Kwon:2009bv,
author = {Kwon, Tae-Hwan and Kwon, Tae-Hwan and Nielsen, Jakob and M{\o}ller, Hanne B and Fenton, Robert A and Nielsen, S{\o}ren and Nielsen, S{\o}ren and Fr{\o}kiaer, J{\o}rgen and Fr{\o}kiaer, J{\o}rgen},
title = {{Aquaporins in the kidney.}},
journal = {Handbook of experimental pharmacology},
year = {2009},
volume = {190},
number = {190},
pages = {95--132}
}
@article{Reitzel:2013eg,
author = {Reitzel, A M and Herrera, S and Layden, M J and Martindale, M Q and Shank, T M},
title = {{Going where traditional markers have not gone before: utility of and promise for RAD sequencing in marine invertebrate phylogeography and population genomics.}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {11},
pages = {2953--2970},
month = jun
}
@article{Perkel:2008fd,
author = {Perkel, Jeffrey},
title = {{SNP genotyping: six technologies that keyed a revolution}},
journal = {Nature Methods},
year = {2008},
volume = {5},
number = {5},
pages = {447--453},
month = may
}
@article{Gross:2009hs,
author = {Gross, Jeferson and Bhattacharya, Debashish},
title = {{Mitochondrial and plastid evolution in eukaryotes: an outsiders' perspective}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {7},
pages = {495--505},
month = jul
}
@article{Amend:2010gm,
author = {Amend, Anthony S and Seifert, Keith A and Bruns, Thomas D},
title = {{Quantifying microbial communities with 454 pyrosequencing: does read abundance count?}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {24},
pages = {5555--5565},
month = nov
}
@article{Barker:2012hm,
author = {Barker, Justine M and Barker, Justine M and Cooper, Christine E and Cooper, Christine E and Withers, Philip C and Withers, Philip C and Cruz-Neto, Ariovaldo P and Cruz-Neto, Ariovaldo P},
title = {{Comparative Biochemistry and Physiology, Part A}},
journal = {Comparative Biochemistry and Physiology Part A: {\ldots}},
year = {2012},
volume = {163},
number = {3-4},
pages = {336--342},
month = nov
}
@article{Yang:2009cl,
author = {YANG, DOU-SHUAN and KENAGY, G J},
title = {{Nuclear and mitochondrial DNA reveal contrasting evolutionary processes in populations of deer mice (\textit{Peromyscus} \textit{maniculatus})}},
journal = {Molecular Ecology},
volume = {18},
number = {24},
pages = {5115--5125}
}
@article{Reeve:1993tq,
author = {Reeve, HK and Sherman, PW},
title = {{ADAPTATION AND THE GOALS OF EVOLUTIONARY RESEARCH}},
journal = {Quarterly Review of Biology},
year = {1993},
volume = {68},
number = {1},
pages = {1--32}
}
@article{Emrich:2007fd,
author = {Emrich, S J and Barbazuk, W B and Li, L and Schnable, P S},
title = {{Gene discovery and annotation using LCM-454 transcriptome sequencing}},
journal = {Genome Research},
year = {2006},
volume = {17},
number = {1},
pages = {69--73},
month = dec
}
@article{Ferris:2004eg,
author = {Ferris, M J and Masztal, A and Martin, D H},
title = {{Use of Species-Directed 16S rRNA Gene PCR Primers for Detection of Atopobium vaginae in Patients with Bacterial Vaginosis}},
journal = {Journal of Clinical Microbiology},
year = {2004},
volume = {42},
number = {12},
pages = {5892--5894},
month = dec
}
@article{Kaelin:2012by,
author = {Kaelin, W G},
title = {{Use and Abuse of RNAi to Study Mammalian Gene Function}},
journal = {Science (New York, NY)},
year = {2012},
volume = {337},
number = {6093},
pages = {421--422},
month = jul
}
@article{Kanzok:2004ci,
author = {Kanzok, Stefan M and Hoa, Ngo T and Bonizzoni, Mariangela and Luna, Coralia and Huang, Yaming and Malacrida, Anna R and Zheng, Liangbiao},
title = {{Origin of Toll-Like Receptor-Mediated Innate Immunity}},
journal = {Journal of Molecular Evolution},
year = {2004},
volume = {58},
number = {4},
pages = {442--448},
month = apr
}
@article{PROMEROVA:2011hi,
author = {PROMEROV{\'A}, MARTA and PROMEROV{\'A}, MARTA and Babik, Wies{\l}aw and Babik, Wies{\l}aw and Bryja, Josef and Albrecht, Tomas and Albrecht, Tomas and STUGLIK, MICHA{\L} and STUGLIK, MICHA{\L} and Radwan, Jacek},
title = {{Evaluation of two approaches to genotyping major histocompatibility complex class I in a passerine-CE-SSCP and 454 pyrosequencing}},
journal = {Molecular Ecology Resources},
year = {2011},
pages = {no--no},
month = oct
}
@article{Rodrigue:2008co,
author = {Rodrigue, N and Philippe, H and Lartillot, N},
title = {{Uniformization for sampling realizations of Markov processes: applications to Bayesian implementations of codon substitution models}},
journal = {Bioinformatics (Oxford, England)},
year = {2007},
volume = {24},
number = {1},
pages = {56--62},
month = dec
}
@article{Roberts:2010de,
author = {Roberts, Sarah A and Simpson, Deborah M and Armstrong, Stuart D and Davidson, Amanda J and Robertson, Duncan H and McLean, Lynn and Beynon, Robert J and Hurst, Jane L},
title = {{Darcin: a male pheromone that stimulates female memory and sexual attraction to an individual male's odour}},
journal = {BMC biology},
year = {2010},
volume = {8},
number = {1},
pages = {75}
}
@article{Trainor:2001hn,
author = {Trainor, Brian C and Marler, Catherine A},
title = {{Testosterone, Paternal Behavior, and Aggression in the Monogamous California Mouse (\textit{Peromyscus} \textit{californicus})}},
journal = {Hormones and Behavior},
year = {2001},
volume = {40},
number = {1},
pages = {32--42},
month = aug
}
@article{Vandegrift:2008tx,
author = {Vandegrift, Kurt J and Raffel, Thomas R and Hudson, Peter J},
title = {{Parasites prevent summer breeding in white-footed mice, \emph{\textit{Peromyscus} leucopus}}},
journal = {Ecology},
year = {2008},
volume = {89},
number = {8},
pages = {2251--2258}
}
@article{Zimin:2009da,
author = {Zimin, Aleksey V and Delcher, Arthur L and Florea, Liliana and Florea, Liliana and Kelley, David R and Schatz, Michael C and Puiu, Daniela and Puiu, Daniela and Hanrahan, Finnian and Hanrahan, Finnian and Pertea, Geo and van Tassell, Curtis P and Sonstegard, Tad S and Mar{\c c}ais, Guillaume and Mar{\c c}ais, Guillaume and Roberts, Michael and Roberts, Michael and Subramanian, Poorani and Subramanian, Poorani and Yorke, James A and Salzberg, Steven L},
title = {{A whole-genome assembly of the domestic cow, Bos taurus}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {4},
pages = {R42}
}
@article{Cruickshank:1999to,
author = {Cruickshank, RH and Thomas, RH},
title = {{Evolution of haplodiploidy in dermanyssine mites (Acari : Mesostigmata)}},
journal = {Evolution},
year = {1999},
volume = {53},
number = {6},
pages = {1796--1803}
}
@article{Creemers:2011ig,
author = {Creemers, Esther E and Creemers, Esther E and Wilde, Arthur A and Wilde, Arthur A and Pinto, Yigal M and Pinto, Yigal M},
title = {{Heart failure: advances through genomics.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {5},
pages = {357--362},
month = may
}
@article{Lohse:2012fg,
author = {Lohse, Marc and Bolger, Anthony M and Nagel, Axel and Fernie, Alisdair R and Lunn, John E and Stitt, Mark and Usadel, Bj{\"o}rn},
title = {{RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics.}},
journal = {Nucleic Acids Research},
year = {2012},
volume = {40},
number = {Web Server issue},
pages = {W622--7},
month = jul
}
@article{Yuan:2012dh,
author = {Yuan, S and Cohen, DB and Ravel, J and Abdo, Z},
title = {{Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome}},
journal = {PLOS ONE},
year = {2012}
}
@article{Yamamoto:2001ww,
author = {Yamamoto, M and Wakatsuki, T and Hada, A and Ryo, A},
title = {{Use of serial analysis of gene expression (SAGE) technology}},
journal = {Journal of Immunological Methods},
year = {2001},
volume = {250},
number = {1-2},
pages = {45--66}
}
@article{Libersat:2012eq,
author = {Libersat, F and Libersat, F and Gal, R and Gal, R},
title = {{What can parasitoid wasps teach us about decision-making in insects?}},
journal = {The Journal of experimental biology},
year = {2012},
volume = {216},
number = {1},
pages = {47--55},
month = dec
}
@article{Haas:2011jg,
author = {Haas, B J and Gevers, D and Earl, A M and Feldgarden, M and Ward, D V and Giannoukos, G and Ciulla, D and Tabbaa, D and Highlander, S K and Sodergren, E and Methe, B and DeSantis, T Z and {The Human Microbiome Consortium} and Petrosino, J F and Knight, R and Birren, B W},
title = {{Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {3},
pages = {494--504},
month = mar
}
@article{CluttonBrock:1989vg,
author = {Clutton-Brock, TH},
title = {{Mammalian Mating Systems}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1989},
volume = {236},
number = {1285},
pages = {339--372}
}
@article{Rowley:1988vd,
author = {Rowley, I and Russell, E and BROWN, R and BROWN, R and BROWN, M and BROWN, M},
title = {{THE ECOLOGY AND BREEDING BIOLOGY OF THE RED-WINGED FAIRY-WREN MALURUS-ELEGANS}},
journal = {Emu},
year = {1988},
volume = {88},
pages = {161--176}
}
@article{Thomas:2005el,
author = {Thomas, M L},
title = {{Intraspecific competition influences the symmetry and intensity of aggression in the Argentine ant}},
journal = {Behavioral Ecology},
year = {2004},
volume = {16},
number = {2},
pages = {472--481},
month = oct
}
@article{WILSON:1983th,
author = {WILSON, DS and WILSON, DS},
title = {{THE GROUP SELECTION CONTROVERSY - HISTORY AND CURRENT STATUS}},
journal = {Annual Review of Ecology and Systematics},
year = {1983},
volume = {14},
pages = {159--187}
}
@article{Byrne:2006wk,
author = {Byrne, P and Rice, W},
title = {{Evidence for adaptive male mate choice in the fruit fly \textit{Drosophila} \textit{melanogaster}}},
journal = {Proceedings of the Royal {\ldots}},
year = {2006}
}
@article{Harrison:2011iy,
author = {Harrison, Melissa M and Li, Xiao-Yong and Kaplan, Tommy and Botchan, Michael R and Eisen, Michael B},
title = {{Zelda Binding in the Early \textit{Drosophila} \textit{melanogaster} Embryo Marks Regions Subsequently Activated at the Maternal-to-Zygotic Transition}},
journal = {PLOS Genetics},
year = {2011},
volume = {7},
number = {10},
pages = {e1002266},
month = oct
}
@article{Sharp:2009eu,
author = {Sharp, Nathaniel P and Agrawal, Aneil F},
title = {{Sexual Selection and the Random Union of Gametes: Testing for a Correlation in Fitness between Mates in \textit{Drosophila} \textit{melanogaster}}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {5},
pages = {613--622},
month = nov
}
@article{Hunt:2010et,
author = {Hunt, B G and Wyder, S and Elango, N and Werren, J H and Zdobnov, E M and Yi, S V and Goodisman, M A D},
title = {{Sociality Is Linked to Rates of Protein Evolution in a Highly Social Insect}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {3},
pages = {497--500},
month = feb
}
@article{Griffith:2010fr,
author = {Griffith, Malachi and Griffith, Obi L and Mwenifumbo, Jill and Goya, Rodrigo and Morrissy, A Sorana and Morin, Ryan D and Corbett, Richard and Tang, Michelle J and Hou, Ying-Chen and Pugh, Trevor J and Robertson, Gordon and Chittaranjan, Suganthi and Ally, Adrian and Asano, Jennifer K and Chan, Susanna Y and Li, Haiyan I and McDonald, Helen and Teague, Kevin and Zhao, Yongjun and Zeng, Thomas and Delaney, Allen and Hirst, Martin and Morin, Gregg B and Jones, Steven J M and Tai, Isabella T and Marra, Marco A},
title = {{Alternative expression analysis by RNA sequencing}},
journal = {Nature Methods},
year = {2010},
volume = {7},
number = {10},
pages = {843--847},
month = sep
}
@article{Drake:2005tb,
author = {Drake, C and Barenfanger, J and Lawhorn, J and Verhulst, S},
title = {{Comparison of easy-flow Copan Liquid Stuart's and Starplex swab transport systems for recovery of fastidious aerobic bacteria}},
journal = {Journal of Clinical Microbiology},
year = {2005},
volume = {43},
number = {3},
pages = {1301--1303}
}
@article{Chaix:2008jo,
author = {Chaix, Raphaelle and Cao, Chen and Donnelly, Peter},
title = {{Is Mate Choice in Humans MHC-Dependent?}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {9},
pages = {e1000184},
month = sep
}
@article{Anonymous:2013ew,
title = {{Science 2013 Colautti}},
year = {2013},
pages = {1--4},
month = oct
}
@article{Castellano:2009hv,
author = {Castellano, Sergio},
title = {{Unreliable preferences, reliable choice and sexual selection in leks}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {1},
pages = {225--232},
month = jan
}
@article{Otti:2009hq,
author = {Otti, Oliver and Naylor, Richard A and Siva-Jothy, Michael T and Reinhardt, Klaus},
title = {{Bacteriolytic Activity in the Ejaculate of an Insect}},
journal = {The American Naturalist},
year = {2009},
volume = {174},
number = {2},
pages = {292--295},
month = aug
}
@article{Sundaresan:2007fw,
author = {Sundaresan, Siva R and Fischhoff, Ilya R and Dushoff, Jonathan and Rubenstein, Daniel I},
title = {{Network metrics reveal differences in social organization between two fission{\textendash}fusion species, Grevy{\textquoteright}s zebra and onager}},
journal = {Oecologia},
year = {2006},
volume = {151},
number = {1},
pages = {140--149},
month = sep
}
@article{Bashalkhanov:2013eg,
author = {Bashalkhanov, Stanislav and Eckert, andrew J and Rajora, Om P},
title = {{Genetic signatures of natural selection in response to air pollution in red spruce ( Picea rubens, Pinaceae)}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = sep
}
@article{Peng:2011dw,
author = {Peng, Weiqun and Zhao, Keji},
title = {{An integrated strategy for identification of both sharp and broad peaks from next-generation sequencing data.}},
journal = {Genome Biology},
year = {2011},
volume = {12},
number = {7},
pages = {120},
month = jul
}
@article{Roulin:2004gf,
author = {Roulin, Alexandre},
title = {{The evolution, maintenance and adaptive function of genetic colour polymorphism in birds}},
journal = {Biological Reviews},
year = {1999},
volume = {79},
number = {4},
pages = {815--848}
}
@article{Hung:2014gw,
author = {Hung, C-M and Zink, R M},
title = {{Distinguishing the effects of selection from demographic history in the genetic variation of two sister passerines based on mitochondrial{\&}ndash;nuclear comparison}},
year = {2014},
volume = {113},
number = {1},
pages = {42--51},
month = mar
}
@article{Bretman:2004wz,
author = {Bretman, A and Wedell, N and Tregenza, T},
title = {{Molecular evidence of post-copulatory inbreeding avoidance in the field cricket Gryllus bimaculatus}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2004},
volume = {271},
number = {1535},
pages = {159--164}
}
@article{ZagalskaNeubauer:2010is,
author = {Zagalska-Neubauer, Magdalena and Zagalska-Neubauer, Magdalena and Babik, Wies{\l}aw and STUGLIK, MICHA{\L} and Gustafsson, Lars and Gustafsson, Lars and Cicho{\'{n}}, Mariusz and Cicho{\'{n}}, Mariusz and Radwan, Jacek},
title = {{454 sequencing reveals extreme complexity of the class II Major Histocompatibility Complex in the collared flycatcher.}},
journal = {BMC Evolutionary Biology},
year = {2010},
volume = {10},
pages = {395}
}
@article{Paterson:2009gb,
author = {Paterson, S and Hurst, J L},
title = {{How effective is recognition of siblings on the basis of genotype?}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {9},
pages = {1875--1881},
month = sep
}
@article{Fernando:2010ed,
author = {Fernando, S C and Purvis, H T and Najar, F Z and Sukharnikov, L O and Krehbiel, C R and Nagaraja, T G and Roe, B A and DeSilva, U},
title = {{Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet}},
journal = {Applied and Environmental Microbiology},
year = {2010},
volume = {76},
number = {22},
pages = {7482--7490},
month = nov
}
@article{Mclean:2011hf,
author = {Mclean, Cory Y and Mclean, Cory Y and Reno, Philip L and Reno, Philip L and Pollen, Alex A and Pollen, Alex A and Bassan, Abraham I and Bassan, Abraham I and Capellini, Terence D and Capellini, Terence D and Guenther, Catherine and Guenther, Catherine and Indjeian, Vahan B and Indjeian, Vahan B and Lim, Xinhong and Lim, Xinhong and Menke, Douglas B and Menke, Douglas B and Schaar, Bruce T and Schaar, Bruce T and Wenger, Aaron M and Wenger, Aaron M and Bejerano, Gill and Bejerano, Gill and Kingsley, David M and Kingsley, David M},
title = {{Human-specific loss of regulatory DNA and the evolution of human-specific traits.}},
journal = {Nature},
year = {2011},
volume = {471},
number = {7337},
pages = {216--219},
month = mar
}
@article{Rise:2004ez,
author = {Rise, M L},
title = {{Development and Application of a Salmonid EST Database and cDNA Microarray: Data Mining and Interspecific Hybridization Characteristics}},
journal = {Genome Research},
year = {2004},
volume = {14},
number = {3},
pages = {478--490},
month = mar
}
@article{Mares:1977te,
author = {Mares, M A},
title = {{Water economy and salt balance in a south american desert rodent, Eligmodontia typus}},
journal = {Comparative Biochemistry and Physiology Part A: Physiology},
year = {1977},
volume = {56},
number = {3},
pages = {325--332}
}
@article{Smith:2012dv,
author = {Smith, Brian Tilston and Bryson, Jr., Robert W and Houston, Derek D and Klicka, John},
title = {{An asymmetry in niche conservatism contributes to the latitudinal species diversity gradient in New World vertebrates}},
journal = {Ecology Letters},
year = {2012},
volume = {15},
number = {11},
pages = {1318--1325},
month = aug
}
@article{Schoville:2012jo,
author = {Schoville, Sean D and Schoville, Sean D and Bonin, Aurelie and Fran{\c c}ois, Olivier and Fran{\c c}ois, Olivier and Lobreaux, St{\'e}phane and Lobreaux, St{\'e}phane and Melodelima, Christelle and Melodelima, Christelle and Manel, St{\'e}phanie and Manel, St{\'e}phanie},
title = {{Adaptive Genetic Variation on the Landscape: Methods and Cases}},
journal = {Annual Review of Ecology Evolution and Systematics},
year = {2012},
volume = {43},
number = {1},
pages = {23--43},
month = dec
}
@article{Mamanova:2010kt,
author = {Mamanova, Lira and Coffey, Alison J and Scott, Carol E and Kozarewa, Iwanka and Turner, Emily H and Kumar, Akash and Howard, Eleanor and Shendure, Jay and Turner, Daniel J},
title = {{Target-enrichment strategies for next-generation sequencing}},
journal = {Nature Methods},
year = {2010},
volume = {7},
number = {2},
pages = {111--118},
month = feb
}
@article{Brain:1992wo,
author = {Brain, P F and Haug, M},
title = {{Hormonal and neurochemical correlates of various forms of animal "aggression"}},
journal = {Psychoneuroendocrinology},
year = {1992},
volume = {17},
number = {6},
pages = {537--551},
month = nov
}
@article{Suchard:2009dj,
author = {Suchard, M A and Rambaut, A},
title = {{Many-core algorithms for statistical phylogenetics}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {11},
pages = {1370--1376},
month = may
}
@article{Bjorkman:1990kh,
author = {Bjorkman, P J and Parham, P},
title = {{Structure, function, and diversity of class I major histocompatibility complex molecules.}},
journal = {Annual review of biochemistry},
year = {1990},
volume = {59},
pages = {253--288}
}
@article{Goldman:2000tx,
author = {Goldman, N and Whelan, S},
title = {{Statistical tests of gamma-distributed rate heterogeneity in models of sequence evolution in phylogenetics}},
journal = {Molecular Biology and Evolution},
year = {2000},
volume = {17},
number = {6},
pages = {975--978},
month = jun
}
@article{vonSalome:2007ev,
author = {Salom{\'e}, Jenny and Gyllensten, Ulf and Bergstrom, Tomas F},
title = {{Full-length sequence analysis of the HLA-DRB1 locus suggests a recent origin of alleles}},
journal = {Immunogenetics},
year = {2007},
volume = {59},
number = {4},
pages = {261--271},
month = feb
}
@article{BRANDLE:1992vr,
author = {BRANDLE, U and ONO, H and VINCEK, V and KLEIN, D and KLEIN, D and GOLUBIC, M and GOLUBIC, M and GRAHOVAC, B and Klein, J},
title = {{TRANSSPECIES EVOLUTION OF MHC-DRB HAPLOTYPE POLYMORPHISM IN PRIMATES - ORGANIZATION OF DRB GENES IN THE CHIMPANZEE}},
journal = {Immunogenetics},
year = {1992},
volume = {36},
number = {1},
pages = {39--48}
}
@article{Chen:1994vb,
author = {Chen, Chong and Rainnie, Donald G and Greene, Robert W and Tonegawa, Susumu},
title = {{Abnormal fear response and aggressive-behavior in mutant mice deficient for alpha-Calcium-Calmodulin Kinase II}},
journal = {Science (New York, NY)},
year = {1994},
volume = {266},
number = {5183},
pages = {291--294}
}
@article{Cox:2010ib,
author = {Cox, R M and Calsbeek, R},
title = {{Cryptic Sex-Ratio Bias Provides Indirect Genetic Benefits Despite Sexual Conflict}},
journal = {Science (New York, NY)},
year = {2010},
volume = {328},
number = {5974},
pages = {92--94},
month = apr
}
@article{Lawniczak:2008ki,
author = {Lawniczak, Mara Kn and Holloway, Alisha K and Begun, David J and Jones, Corbin D},
title = {{Genomic analysis of the relationship between gene expression variation and DNA polymorphism in \textit{Drosophila} \textit{simulans}}},
journal = {Genome Biology},
year = {2008},
volume = {9},
number = {8},
pages = {R125}
}
@incollection{Thomas:2007ig,
author = {Thomas, Gavin H and Sz{\'e}kely, Tam{\'a}s and Reynolds, John D},
title = {{Sexual Conflict and the Evolution of Breeding Systems in Shorebirds}},
year = {2007},
pages = {279--342},
publisher = {Elsevier}
}
@article{MOORE:2001vh,
author = {MOORE, AJ and Gowaty, PA and Wallin, WG and Moore, PJ},
title = {{Sexual conflict and the evolution of female mate choice and male social dominance}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2001},
volume = {268},
number = {1466},
pages = {517--523}
}
@article{piysegui:2011uq,
author = {{pi-ysegui}},
title = {{Basic research}},
year = {2011},
pages = {1--13},
month = jul
}
@article{KIRKPATRICK:1982wz,
author = {KIRKPATRICK, M},
title = {{SEXUAL SELECTION AND THE EVOLUTION OF FEMALE CHOICE}},
journal = {Evolution},
year = {1982},
volume = {36},
number = {1},
pages = {1--12}
}
@article{Zuk:1998un,
author = {Zuk, M and Kolluru, GR},
title = {{Exploitation of sexual signals by predators and parasitoids}},
journal = {Quarterly Review of Biology},
year = {1998},
volume = {73},
number = {4},
pages = {415--438}
}
@article{Hawley:2012dj,
author = {Hawley, Dana M and Hawley, Dana M and Fleischer, Robert C},
title = {{Contrasting Epidemic Histories Reveal Pathogen-Mediated Balancing Selection on Class II MHC Diversity in a Wild Songbird}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e30222},
month = jan
}
@article{Bukovetzky:2012jy,
author = {Bukovetzky, Elena and Schwimmer, Hagit and Fares, Fuad and Haim, Abraham},
title = {{Photoperiodicity and increasing salinity as environmental cues for reproduction in desert adapted rodents}},
journal = {Hormones and Behavior},
year = {2012},
volume = {61},
number = {1},
pages = {84--90},
month = jan
}
@article{bchboes:2009uq,
author = {{bch1boes}},
title = {{Microsoft Word - Supporting Figure S1.doc}},
year = {2009},
pages = {1--1},
month = feb
}
@article{vanHooft:2008gs,
author = {van Hooft, Pim and Cosson, J F and Vibe-Petersen, S and Leirs, H},
title = {{Dispersal in Mastomys natalensis mice: use of fine-scale genetic analyses for pest management}},
journal = {Hereditas},
year = {2008},
volume = {145},
number = {6},
pages = {262--273},
month = dec
}
@article{Petrie:1998wt,
author = {Grabherr, Manfred G and Petrie, M and Doums, C and Haas, Brian J and Yassour, Moran and Moller, AP and Levin, Joshua Z and Thompson, Dawn A and Amit, Ido and Adiconis, Xian and Fan, Lin and Raychowdhury, Raktima and Zeng, Qiandong and Chen, Z and Mauceli, Evan and Hacohen, Nir and Gnirke, andreas and Rhind, Nicholas and di Palma, Federica and Birren, Bruce W and Nusbaum, Chad and Lindblad-Toh, Kerstin and Friedman, Nir and Regev, Aviv},
title = {{The degree of extra-pair paternity increases with genetic variability}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1998},
volume = {95},
number = {16},
pages = {9390--9395}
}
@article{Cooney:2000wu,
author = {Cooney, R and Bennett, NC},
title = {{Inbreeding avoidance and reproductive skew in a cooperative mammal}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1445},
pages = {801--806}
}
@article{Anonymous:2012ed,
author = {Singh, Nadia D and Jensen, Jeffrey D and Clark, andrew G and Aquadro, Charles F},
title = {{Inferences of demography and selection in an African population of \textit{Drosophila} \textit{melanogaster}.}},
journal = {Genetics},
year = {2013},
volume = {193},
number = {1},
pages = {215--228},
month = jan
}
@article{Goodsaid:2009eq,
author = {Goodsaid, F M and Blank, M and Dieterle, F and Harlow, P and Hausner, E and Sistare, F and Thompson, A and Vonderscher, J},
title = {{Novel Biomarkers of Acute Kidney Toxicity}},
journal = {Clinical Pharmacology {\&}{\#}38; Therapeutics},
year = {2009},
volume = {86},
number = {5},
pages = {490--496},
month = aug
}
@article{Sirot:2009ic,
author = {Sirot, Laura K and Buehner, Norene A and Fiumera, Anthony C and Wolfner, Mariana F},
title = {{Seminal fluid protein depletion and replenishment in the fruit fly, \textit{Drosophila} \textit{melanogaster}: an ELISA-based method for tracking individual ejaculates}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {10},
pages = {1505--1513},
month = jun
}
@article{BELL:1980uu,
author = {BELL, G and BELL, G},
title = {{THE COSTS OF REPRODUCTION AND THEIR CONSEQUENCES}},
journal = {The American Naturalist},
year = {1980},
volume = {116},
number = {1},
pages = {45--76}
}
@article{Rundle:2009ft,
author = {Rundle, H D and Chenoweth, S F and Blows, M W},
title = {{The diversification of mate preferences by natural and sexual selection}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {8},
pages = {1608--1615},
month = aug
}
@article{Ryder:2009ik,
author = {Ryder, T B and Parker, P G and Blake, J G and Loiselle, B A},
title = {{It takes two to tango: reproductive skew and social correlates of male mating success in a lek-breeding bird}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1666},
pages = {2377--2384},
month = may
}
@article{Lister:2011kg,
author = {Lister, Ryan and Pelizzola, Mattia and Kida, Yasuyuki S and Hawkins, R David and Nery, Joseph R and Hon, Gary and Antosiewicz-Bourget, Jessica and O'Malley, Ronan and Castanon, Rosa and Klugman, Sarit and Downes, Michael and Yu, Ruth and Stewart, Ron and Ren, Bing and Thomson, James A and Evans, Ronald M and Ecker, Joseph R},
title = {{Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells}},
journal = {Nature},
year = {2011},
volume = {471},
number = {7336},
pages = {68--73},
month = feb
}
@article{Hampl:2009dt,
author = {Hampl, V and Hug, L and Leigh, J W and Dacks, J B and Lang, B F and Simpson, A G B and Roger, A J},
title = {{Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {10},
pages = {3859--3864},
month = mar
}
@article{Steiger:2009ht,
author = {Steiger, Silke S and Kuryshev, Vladimir Y and Stensmyr, Marcus C and Kempenaers, Bart and Mueller, Jakob C},
title = {{A comparison of reptilian and avian olfactory receptor gene repertoires: Species-specific expansion of group $\gamma$ genes in birds}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {446}
}
@article{Meaney:2010iu,
author = {Meaney, Michael J and Ferguson-Smith, Anne C},
title = {{Epigenetic regulation of the neural transcriptome: the meaning of the marks}},
journal = {Nature Neuroscience},
year = {2010},
volume = {13},
number = {11},
pages = {1313--1318},
month = nov
}
@article{Segoli:2006hw,
author = {Segoli, Michal and Harari, Ally R and Lubin, Yael},
title = {{Limited mating opportunities and male monogamy: a field study of white widow spiders, Latrodectus pallidus (Theridiidae)}},
journal = {Animal Behaviour},
year = {2006},
volume = {72},
number = {3},
pages = {635--642},
month = sep
}
@article{Dickinson:1998tg,
author = {Dickinson, JL and Akre, JJ},
title = {{Extrapair paternity, inclusive fitness, and within-group benefits of helping in western bluebirds}},
journal = {Molecular Ecology},
year = {1998},
volume = {7},
number = {1},
pages = {95--105}
}
@article{Lozier:2009bm,
author = {Lozier, J. D. and Lozier, J. D. and Aniello, P. and Aniello, P. and Hickerson, M J},
title = {{Predicting the distribution of Sasquatch in western North America: anything goes with ecological niche modelling}},
journal = {Journal of Biogeography},
year = {2009},
volume = {36},
number = {9},
pages = {1623--1627}
}
@article{Ju:2000tc,
author = {Ju, ZL and Karsi, A and Kocabas, A and Patterson, A and Li, P and Cao, DF and Dunham, R and Liu, ZJ},
title = {{Transcriptome analysis of channel catfish (Ictalurus punctatus): genes and expression profile from the brain}},
journal = {Gene},
year = {2000},
volume = {261},
number = {2},
pages = {373--382}
}
@article{Wiegmann:2006hs,
author = {Wiegmann, Daniel D and Nguyen, Truc},
title = {{Mating system and demographic constraints on the opportunity for sexual selection}},
journal = {Theoretical Population Biology},
year = {2006},
volume = {69},
number = {1},
pages = {34--47},
month = feb
}
@article{KENTER:1992vu,
author = {KENTER, M and KENTER, M and Otting, N and Otting, N and ANHOLTS, J and ANHOLTS, J and JONKER, M and JONKER, M and SCHIPPER, R and SCHIPPER, R and Bontrop, RE and Bontrop, RE},
title = {{MHC-DRB DIVERSITY OF THE CHIMPANZEE (PAN-TROGLODYTES)}},
journal = {Immunogenetics},
year = {1992},
volume = {37},
number = {1},
pages = {1--11}
}
@article{Schmoll:2003ik,
author = {Schmoll, Tim and Janzon, Volker and Epplen, J{\"o}rg T and Lubjuhn, Thomas},
title = {{Extra-pair sires as identified by means of standardized across-gel comparisons of multilocus DNA fingerprints}},
journal = {ELECTROPHORESIS},
year = {2003},
volume = {24},
number = {16},
pages = {2758--2763},
month = aug
}
@article{Rowley:1993vx,
author = {Rowley, I and Russell, E},
title = {{THE PURPLE-CROWNED FAIRY-WREN MALURUS-CORONATUS .2. BREEDING BIOLOGY, SOCIAL-ORGANIZATION, DEMOGRAPHY AND MANAGEMENT}},
journal = {Emu},
year = {1993},
volume = {93},
pages = {235--250}
}
@article{Peery:2012hd,
author = {Peery, M Zachariah and Peery, M Zachariah and KIRBY, REBECCA and KIRBY, REBECCA and REID, BRENDAN N and REID, BRENDAN N and STOELTING, RICKA and STOELTING, RICKA and DOUCET-B{\"E}ER, ELENA and DOUCET-B{\"E}ER, ELENA and ROBINSON, STACIE and ROBINSON, STACIE and V{\'A}SQUEZ-CARRILLO, CATALINA and V{\'A}SQUEZ-CARRILLO, CATALINA and PAULI, JONATHAN N and PAULI, JONATHAN N and Palsboll, Per J and Palsboll, Per J},
title = {{Reliability of genetic bottleneck tests for detecting recent population declines}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = may
}
@article{Webster:2010gi,
author = {Webster, L M I and Paterson, S and Mougeot, F and Martinez-Padilla, J and Piertney, S B},
title = {{Transcriptomic response of red grouse to gastro-intestinal nematode parasites and testosterone: implications for population dynamics}},
journal = {Molecular Ecology},
year = {2010},
volume = {20},
number = {5},
pages = {920--931},
month = nov
}
@article{Trapnell:2009dp,
author = {Trapnell, C and Pachter, L and Salzberg, S L},
title = {{TopHat: discovering splice junctions with RNA-Seq}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {9},
pages = {1105--1111},
month = apr
}
@article{Ober:2008kv,
author = {Ober, Carole and Loisel, Dagan A and Gilad, Yoav},
title = {{Sex-specific genetic architecture of human disease}},
journal = {Nature Reviews Genetics},
year = {2008},
volume = {9},
number = {12},
pages = {911--922},
month = dec
}
@article{Goecks:2010ea,
author = {Schatz, Michael C},
title = {{Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences.}},
journal = {Genome Biology},
year = {2010},
volume = {11},
number = {8},
pages = {R86}
}
@article{Rambaut:1997ut,
author = {Rambaut, A and Grassly, N C},
title = {{Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees}},
journal = {Computer applications in the biosciences : CABIOS},
year = {1997},
volume = {13},
number = {3},
pages = {235--238},
month = jun
}
@article{Aird:2013bo,
author = {Aird, Steven D and Watanabe, Yutaka and Villar-Briones, Alejandro and Roy, Michael C and Terada, Kouki and Mikheyev, Alexander S},
title = {{Quantitative high-throughput profiling of snake venom gland transcriptomes and proteomes (Ovophis okinavensis and Protobothrops flavoviridis)}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {790}
}
@article{Bik:2010eq,
author = {Bik, Elisabeth M and Bik, Elisabeth M and Long, Clara Davis and Long, Clara Davis and Armitage, Gary C and Armitage, Gary C and Loomer, Peter and Loomer, Peter and Emerson, Joanne and Emerson, Joanne and Mongodin, Emmanuel F and Mongodin, Emmanuel F and Nelson, Karen E and Nelson, Karen E and Gill, Steven R and Gill, Steven R and Fraser-Liggett, Claire M and Fraser-Liggett, Claire M and Relman, David A and Relman, David A},
title = {{Bacterial diversity in the oral cavity of 10 healthy individuals}},
journal = {The ISME Journal},
year = {2010},
volume = {4},
number = {8},
pages = {962--974}
}
@article{Leech:2001wf,
author = {Leech, DI and HARTLEY, IR and Stewart, IRK and Griffith, SC and Burke, T},
title = {{No effect of parental quality or extrapair paternity on brood sex ratio in the blue tit (Parus caeruleus)}},
journal = {Behavioral Ecology},
year = {2001},
volume = {12},
number = {6},
pages = {674--680}
}
@article{BIRKHEAD:1993uq,
author = {BIRKHEAD, T and MOLLER, A},
title = {{FEMALE CONTROL OF PATERNITY}},
journal = {Trends In Ecology {\&} Evolution},
year = {1993},
volume = {8},
number = {3},
pages = {100--104}
}
@article{Duval:2012fi,
author = {Duval, Emily H},
title = {{Variation in annual and lifetime reproductive success of lance-tailed manakins: alpha experience mitigates effects of senescence on siring success.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1733},
pages = {1551--1559},
month = apr
}
@article{VirantDoberlet:2011ct,
author = {Virant-Doberlet, Meta and King, R andrew and Polajnar, Jernej and Symondson, William O C},
title = {{Molecular diagnostics reveal spiders that exploit prey vibrational signals used in sexual communication}},
journal = {Molecular Ecology},
year = {2011},
volume = {20},
number = {10},
pages = {2204--2216},
month = feb
}
@article{Jones:1997ug,
author = {Jones, AG and Avise, JC},
title = {{Polygynandry in the dusky pipefish \textit{Syngnathus floridae} revealed by microsatellite DNA markers}},
journal = {Evolution},
year = {1997},
volume = {51},
number = {5},
pages = {1611--1622}
}
@article{Crandall:1999uv,
author = {Crandall, K A and Crandall, K A and Kelsey, C R and Kelsey, C R and Imamichi, H and Imamichi, H and Lane, H C and Lane, H C and Salzman, N P and Salzman, N P},
title = {{Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection.}},
journal = {Molecular Biology and Evolution},
year = {1999},
volume = {16},
number = {3},
pages = {372--382},
month = mar,
annote = {omega {\&}gt; 1 may be too stringent for when selection asts on only a few sites.. }
}
@article{Roberts:2012dh,
author = {Roberts, Adam and Pachter, Lior},
title = {{Streaming fragment assignment for real-time analysis of sequencing experiments.}},
journal = {Nature Methods},
year = {2013},
volume = {10},
number = {1},
pages = {71--73}
}
@article{Roff:2013jf,
author = {Roff, D A and Fairbairn, D J},
title = {{The costs of being dark: the genetic basis of melanism and its association with fitness-related traits in the sand cricket}},
journal = {Journal of Evolutionary Biology},
year = {2013},
pages = {n/a--n/a},
month = may
}
@article{Kumar:2012ko,
author = {Kumar, Ranjit and Kumar, Ranjit and Lawrence, Mark L and Lawrence, Mark L and Watt, James and Watt, James and Cooksey, Amanda M and Cooksey, Amanda M and Burgess, Shane C and Burgess, Shane C and Nanduri, Bindu and Nanduri, Bindu},
title = {{RNA-Seq Based Transcriptional Map of Bovine Respiratory Disease Pathogen {\textquotedblleft}Histophilus somni 2336{\textquotedblright}}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {1},
pages = {e29435},
month = jan
}
@article{Joos:1992vo,
author = {Joos, Barbara},
title = {{Adaptations for locomotion at low body temperatures in eastern tent caterpillars, \textit{Malacosoma} \textit{americanum}}},
journal = {Physiological Zoology},
year = {1992},
pages = {1148--1161}
}
@article{PARKER:1990vs,
author = {Parker, GA},
title = {{SPERM COMPETITION GAMES - RAFFLES AND ROLES}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1990},
volume = {242},
number = {1304},
pages = {120--126}
}
@article{Faith:1992vm,
author = {Faith, DP and Faith, DP},
title = {{Conservation Evaluation and Phylogenetic Diversity}},
journal = {Biological Conservation},
year = {1992},
volume = {61},
number = {1},
pages = {1--10}
}
@article{Babik:2009hd,
author = {Babik, Wies{\l}aw and Taberlet, Pierre and Ejsmond, Maciej Jan and Radwan, Jacek},
title = {{New generation sequencers as a tool for genotyping of highly polymorphic multilocus MHC system}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {3},
pages = {713--719},
month = may
}
@article{Manhart:2002wn,
author = {Manhart, LE and Aral, SO and Holmes, KK and Foxman, B},
title = {{Sex partner concurrency - Measurement, prevalence, and correlates among urban 18-39-year-olds}},
journal = {Sexually Transmitted Diseases},
year = {2002},
volume = {29},
number = {3},
pages = {133--143}
}
@article{Jobson:2009cj,
author = {Jobson, R W and Nabholz, B and Galtier, N},
title = {{An Evolutionary Genome Scan for Longevity-Related Natural Selection in Mammals}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {4},
pages = {840--847},
month = mar
}
@article{Hickerson:2000vf,
author = {Hickerson, M J and Cunningham, C W},
title = {{Dramatic mitochondrial gene rearrangements in the hermit crab Pagurus longicarpus (Crustacea, anomura)}},
journal = {Molecular Biology and Evolution},
year = {2000},
volume = {17},
number = {4},
pages = {639--644},
month = apr
}
@article{Pochron:2003cy,
author = {Pochron, Sharon T and Wright, Patricia C},
title = {{Variability in adult group compositions of a prosimian primate}},
journal = {Behavioral Ecology and Sociobiology},
year = {2003},
volume = {54},
number = {3},
pages = {285--293},
month = aug
}
@article{Ostfeld:1986td,
author = {Ostfeld, R S},
title = {{Territoriality and mating system of california voles}},
journal = {Journal of Animal Ecology},
year = {1986},
volume = {55},
number = {2},
pages = {691--706}
}
@article{Parker:2014gba,
author = {Parker, Joe and Tsagkogeorga, Georgia and Cotton, James A and Liu, Yuan and Provero, Paolo and Stupka, Elia and Rossiter, Stephen J},
title = {{Nature 2014 Parker}},
journal = {Nature},
year = {2014},
volume = {502},
number = {7470},
pages = {228--231},
month = apr
}
@article{Korneliussen:2013uz,
author = {Korneliussen, T S and Moltke, I and Albrechtsen, A},
title = {{Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data}},
journal = {BMC {\ldots}},
year = {2013}
}
@article{Johnstone:2008hb,
author = {Johnstone, Rufus A and Cant, Michael A},
title = {{Sex Differences in Dispersal and the Evolution of Helping and Harming}},
journal = {The American Naturalist},
year = {2008},
volume = {172},
number = {3},
pages = {318--330},
month = sep
}
@article{Macedo:1988wm,
author = {Mac{\^e}do, RH and Mares, MA},
title = {{Neotoma albigula}},
journal = {Mammalian Species},
year = {1988},
pages = {1--7}
}
@article{Wilson:2006cc,
author = {Wilson, Daniel J and McVean, Gilean},
title = {{Estimating diversifying selection and functional constraint in the presence of recombination.}},
journal = {Genetics},
year = {2006},
volume = {172},
number = {3},
pages = {1411--1425},
month = mar
}
@article{Long:2010jp,
author = {Long, T A F and Pischedda, A and Nichols, R V and Rice, W R},
title = {{The timing of mating influences reproductive success in \textit{Drosophila} \textit{melanogaster}: implications for sexual conflict}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {5},
pages = {1024--1032},
month = may
}
@article{Iqbal:2012fx,
author = {Iqbal, Zamin and Iqbal, Zamin and Caccamo, Mario and Caccamo, Mario and Turner, Isaac and Turner, Isaac and Flicek, Paul and Mcvean, Gil},
title = {{\textit{De novo} assembly and genotyping of variants using colored \textit{de Bruijn} graphs}},
journal = {Nature Genetics},
year = {2012},
month = jan
}
@article{Luikart:2003cm,
author = {Luikart, Gordon and England, Phillip R and Tallmon, David and Jordan, Steve and Taberlet, Pierre},
title = {{The power and promise of population genomics: from genotyping to genome typing}},
journal = {Nature Reviews Genetics},
year = {2003},
volume = {4},
number = {12},
pages = {981--994},
month = dec
}
@article{Yukutake:2010ia,
author = {Yukutake, Y and Yasui, M},
title = {{Regulation of Water Permeability Through Aquaporin-4}},
journal = {NSC},
year = {2010},
volume = {168},
number = {4},
pages = {885--891},
month = jul
}
@article{Shearer:2010df,
author = {Shearer, A E and DeLuca, A P and Hildebrand, M S and Taylor, K R and Gurrola, J and Scherer, S and Scheetz, T E and Smith, R J H},
title = {{Comprehensive genetic testing for hereditary hearing loss using massively parallel sequencing}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {49},
pages = {21104--21109},
month = dec
}
@article{Jarzebowska:2009jd,
author = {Jarzebowska, Magdalena and Radwan, Jacek},
title = {{SEXUAL SELECTION COUNTERACTS EXTINCTION OF SMALL POPULATIONS OF THE BULB MITES}},
journal = {Evolution},
year = {2009},
month = dec
}
@article{Seliger:2009hm,
author = {Seliger, Barbara and Dressler, Sven P and Wang, Ena and Kellner, Roland Recktenwald, Christian V and Lottspeich, Friedrich and Marincola, Francesco M and Baumg{\"a}rtner, Maja and Atkins, Derek and Lichtenfels, Rudolf},
title = {{Combined analysis of transcriptome and proteome data as a tool for the identification of candidate biomarkers in renal cell carcinoma}},
journal = {PROTEOMICS},
year = {2009},
volume = {9},
number = {6},
pages = {1567--1581},
month = mar
}
@article{Patris:1998fd,
author = {Patris, B and BAUDOIN, C},
title = {{Female sexual preferences differ inMus spicilegusandMus musculus domesticus: the role of familiarization and sexual experience}},
journal = {Animal Behaviour},
year = {1998},
volume = {56},
number = {6},
pages = {1465--1470},
month = dec
}
@article{Schatz:2012cn,
author = {Koren, Sergey and Schatz, Michael C and Walenz, Brian P and Martin, Jeffrey and Howard, Jason T and Ganapathy, Ganeshkumar and Wang, Zhong and Rasko, David A and McCombie, W Richard and Jarvis, Erich D and Phillippy, Adam M},
title = {{Hybrid error correction and \textit{de novo} assembly of single-molecule sequencing reads}},
journal = {Nature Biotechnology},
year = {2012},
volume = {30},
number = {7},
pages = {693--700},
month = jul
}
@article{Scally:2012ik,
author = {Scally, Aylwyn and Scally, Aylwyn and Dutheil, Julien Y and Dutheil, Julien Y and Hillier, LaDeana W and Hillier, LaDeana W and Jordan, Gregory E and Jordan, Gregory E and Goodhead, Ian and Goodhead, Ian and Herrero, Javier and Herrero, Javier and Hobolth, Asger and Hobolth, Asger and Lappalainen, Tuuli and Lappalainen, Tuuli and Mailund, Thomas and Marqu{\`e}s-Bonet, Tom{\`a}s and McCarthy, Shane and McCarthy, Shane and Montgomery, Stephen H and Montgomery, Stephen H and Schwalie, Petra C and Schwalie, Petra C and Tang, Y Amy and Tang, Y Amy and Ward, Michelle C and Ward, Michelle C and Xue, Yali and Xue, Yali and Yngvadottir, Bryndis and Yngvadottir, Bryndis and Alkan, Can and Alkan, Can and andersen, Lars N and andersen, Lars N and Ayub, Qasim and Ayub, Qasim and Ball, Edward V and Ball, Edward V and Beal, Kathryn and Beal, Kathryn and Bradley, Brenda J and Bradley, Brenda J and Chen, Yuan and Chen, Yuan and Clee, Chris M and Clee, Chris M and Fitzgerald, Stephen and Fitzgerald, Stephen and Graves, Tina A and Graves, Tina A and Gu, Yong and Gu, Yong and Heath, Paul and Heath, Paul and Heger, andreas and Heger, andreas and Karakoc, Emre and Karakoc, Emre and Kolb-Kokocinski, Anja and Kolb-Kokocinski, Anja and Laird, Gavin K and Laird, Gavin K and Lunter, Gerton and Lunter, Gerton and Meader, Stephen and Meader, Stephen and Mort, Matthew and Mort, Matthew and Mullikin, James C and Mullikin, James C and Munch, Kasper and Munch, Kasper and O'Connor, Timothy D and O'Connor, Timothy D and Phillips, andrew D and Phillips, andrew D and Prado-Martinez, Javier and Prado-Martinez, Javier and Rogers, Anthony S and Rogers, Anthony S and Sajjadian, Saba and Sajjadian, Saba and Schmidt, Dominic and Schmidt, Dominic and Shaw, Katy and Shaw, Katy and Simpson, Jared T and Stenson, Peter D and Stenson, Peter D and Turner, Daniel J and Turner, Daniel J and Vigilant, Linda and Vigilant, Linda and Vilella, Albert J and Vilella, Albert J and Whitener, Weldon and Whitener, Weldon and Zhu, Baoli and Zhu, Baoli and Cooper, David N and Cooper, David N and de Jong, Pieter and de Jong, Pieter and Dermitzakis, Emmanouil T and Dermitzakis, Emmanouil T and Eichler, Evan E and Eichler, Evan E and Flicek, Paul and Flicek, Paul and Goldman, Nick and Goldman, Nick and Mundy, Nicholas I and Mundy, Nicholas I and Ning, Zemin and Odom, Duncan T and Odom, Duncan T and Ponting, Chris P and Ponting, Chris P and Quail, Michael A and Quail, Michael A and Ryder, Oliver A and Ryder, Oliver A and Searle, Stephen M and Searle, Stephen M and Warren, Wesley C and Wilson, Richard K and Wilson, Richard K and Schierup, Mikkel H and Schierup, Mikkel H and Rogers, Jane and Rogers, Jane and Tyler-Smith, Chris and Tyler-Smith, Chris and Durbin, Richard},
title = {{Insights into hominid evolution from the gorilla genome sequence.}},
journal = {Nature},
year = {2012},
volume = {483},
number = {7388},
pages = {169--175},
month = mar
}
@article{Quillery:2013bea,
author = {Quillery, E and Quenez, O and Peterlongo, P and Plantard, O},
title = {{Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of Single Nucleotide Polymorphisms}},
journal = {Molecular ecology resources},
year = {2013},
pages = {n/a--n/a},
month = oct
}
@article{Nunn:2000ut,
author = {Nunn, CL and Gittleman, JL and Antonovics, J},
title = {{Promiscuity and the primate immune system}},
journal = {Science (New York, NY)},
year = {2000},
volume = {290},
number = {5494},
pages = {1168--1170}
}
@article{GonzalezLagos:2010kk,
author = {Gonz{\'a}lez-Lagos, C and Sol, D and Reader, S M},
title = {{Large-brained mammals live longer}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {5},
pages = {1064--1074},
month = may
}
@article{Ortego:2007je,
author = {Ortego, Joaquin and Aparicio, Jose Miguel and Calabuig, Gustau and Cordero, Pedro J},
title = {{Risk of ectoparasitism and genetic diversity in a wild lesser kestrel population}},
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {17},
pages = {3712--3720},
month = sep
}
@article{Unck:2009eg,
author = {Unck, C E and Waterman, J M and Verburgt, L and Bateman, P W},
title = {{Quantity versus quality: how does level of predation threat affect Cape ground squirrel vigilance?}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {3},
pages = {625--632},
month = sep
}
@article{Hodgkinson:2011ira,
author = {Hodgkinson, Alan and Eyre-Walker, Adam},
title = {{Variation in the mutation rate across mammalian genomes}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {11},
pages = {756--766},
month = oct
}
@article{KChiang:2010in,
author = {Chiang, Charleston W K and Gajdos, Zofia K Z and Korn, Joshua M and Kuruvilla, Finny G and Butler, Johannah L and Hackett, Rachel and Guiducci, Candace and Nguyen, Thutrang T and Wilks, Rainford and Forrester, Terrence and Haiman, Christopher A and Henderson, Katherine D and Le Marchand, Loic and Henderson, Brian E and Palmert, Mark R and McKenzie, Colin A and Lyon, Helen N and Cooper, Richard S and Zhu, Xiaofeng and Hirschhorn, Joel N},
title = {{Rapid Assessment of Genetic Ancestry in Populations of Unknown Origin by Genome-Wide Genotyping of Pooled Samples}},
journal = {PLOS Genetics},
year = {2010},
volume = {6},
number = {3},
pages = {e1000866},
month = mar
}
@article{Bell:2011if,
author = {Bell, M B V and Nichols, H J and Gilchrist, J S and Cant, M A and Hodge, S J},
title = {{The cost of dominance: suppressing subordinate reproduction affects the reproductive success of dominant female banded mongooses}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
volume = {279},
number = {1728},
pages = {619--624},
month = dec
}
@article{Ruch:2009hx,
author = {Ruch, Jasmin and Heinrich, Lisa and Bilde, Trine and Schneider, Jutta M},
title = {{Relatedness facilitates cooperation in the subsocial spider, Stegodyphus tentoriicola}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {257}
}
@article{Struck:2011dv,
author = {Struck, Torsten H and Paul, Christiane and Hill, Natascha and Hartmann, Stefanie and H{\"o}sel, Christoph and Kube, Michael and Lieb, Bernhard and Meyer, Achim and Tiedemann, Ralph and Purschke, G{\"u}nter and Bleidorn, Christoph},
title = {{Phylogenomic analyses unravel annelid evolution}},
journal = {Nature},
year = {2011},
volume = {471},
number = {7336},
pages = {95--98},
month = mar
}
@article{Yang:2005tn,
author = {Yang, B and Bankir, L},
title = {{Urea and urine concentrating ability: new insights from studies in mice}},
journal = {American Journal of Physiology-Renal {\ldots}},
year = {2005}
}
@article{Liu:2005cz,
author = {Liu, Huishu and Wintour, E Marelyn},
title = {{Aquaporins in development -- a review.}},
journal = {Reproductive biology and endocrinology : RB{\&}E},
year = {2005},
volume = {3},
pages = {18}
}
@article{Shaham:2009er,
author = {Shaham, Shai},
title = {{galign: A Tool for Rapid Genome Polymorphism Discovery}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {9},
pages = {e7188},
month = sep
}
@article{Gage:2002kb,
author = {Gage, M J G and Parker, G A and Nylin, S and Wiklund, C},
title = {{Sexual selection and speciation in mammals, butterflies and spiders}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2002},
volume = {269},
number = {1507},
pages = {2309--2316},
month = nov
}
@article{Hayes:2006ia,
author = {Rossiter, Stephen J and Ransome, Roger D and Faulkes, Christopher G and Dawson, Deborah A and Jones, Gareth},
title = {{Long-term paternity skew and the opportunity for selection in a mammal with reversed sexual size dimorphism.}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {10},
pages = {3035--3043},
month = sep
}
@article{Anonymous:d5JNR9Ml,
title = {{Asus z8pe-d18_v2}},
year = {2009},
pages = {1--164},
month = jun
}
@article{Weinberger:2010bs,
author = {Weinberger, H and Moran, Y and Gordon, D and Turkov, M and Kahn, R and Gurevitz, M},
title = {{Positions under Positive Selection--Key for Selectivity and Potency of Scorpion ~-Toxins}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {5},
pages = {1025--1034},
month = apr
}
@article{Li:2009fv,
author = {Li, V C and Davis, J C and Lenkov, K and Bolival, B and Fuller, M T and Petrov, D A},
title = {{Molecular Evolution of the Testis TAFs of \textit{Drosophila}}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {5},
pages = {1103--1116},
month = apr
}
@article{Cagliani:2009fe,
author = {Cagliani, Rachele and Fumagalli, Matteo and Pozzoli, Uberto and Riva, Stefania and Cereda, Matteo and Comi, Giacomo P and Pattini, Linda and Bresolin, Nereo and Sironi, Manuela},
title = {{A complex selection signature at the human AVPR1B gene}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {123}
}
@article{Pevzner:2009ga,
author = {Pevzner, P and Shamir, R},
title = {{Computing Has Changed Biology--Biology Education Must Catch Up}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5940},
pages = {541--542},
month = jul
}
@article{MacManes:2013ec,
author = {MacManes, Matthew David and Eisen, Michael B},
title = {{Improving transcriptome assembly through error correction of high-throughput sequence reads.}},
journal = {PeerJ},
year = {2013},
volume = {1},
pages = {e113}
}
@article{Storz:2010gq,
author = {Storz, Jay F and Wheat, Christopher W},
title = {{Integrating evolutionary and functional approaches to infer adaptation at specific loci.}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {9},
pages = {2489--2509},
month = sep
}
@article{Peters:2005ku,
author = {Peters, Jeffrey L and McCracken, Kevin G and Zhuravlev, Yuri N and Lu, Yi and Wilson, Robert E and Johnson, Kevin P and Omland, Kevin E},
title = {{Phylogenetics of wigeons and allies (Anatidae: Anas): the importance of sampling multiple loci and multiple individuals}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2005},
volume = {35},
number = {1},
pages = {209--224},
month = apr
}
@article{dosReis:2013wb,
author = {dos Reis, Mario},
title = {{Population genetics and substitution models of adaptive evolution}},
journal = {arXiv.org},
year = {2013},
eprint = {1311.6682v1},
eprinttype = {arxiv},
eprintclass = {q-bio.PE},
month = nov
}
@article{Tenesa:2009dq,
author = {Tenesa, Albert and Dunlop, Malcolm G},
title = {{New insights into the aetiology of colorectal cancer from genome-wide association studies}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {6},
pages = {353--358},
month = jun
}
@article{Crawford:2008un,
author = {Crawford, Joanne C and Liu, Zhiwei and Nelson, Thomas A and Nielsen, Clayton K and Blooniquist, Craig K and Blooniquist, Craig K},
title = {{Microsatellite analysis of mating and kinship in beavers (Castor canadensis)}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {3},
pages = {575--581}
}
@article{Quinlan:2010km,
author = {Quinlan, A R and Hall, I M},
title = {{BEDTools: a flexible suite of utilities for comparing genomic features}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {6},
pages = {841--842},
month = mar
}
@article{Walker:2011hn,
author = {Walker, Alan W and Walker, Alan W and Ince, Jennifer and Ince, Jennifer and Duncan, Sylvia H and Duncan, Sylvia H and Webster, Lucy M and Webster, Lucy M and Holtrop, Grietje and Holtrop, Grietje and Ze, Xiaolei and Ze, Xiaolei and Brown, David and Brown, David and Stares, Mark D and Stares, Mark D and Scott, Paul and Scott, Paul and Bergerat, Aurore and Bergerat, Aurore and Louis, Petra and Louis, Petra and McIntosh, Freda and McIntosh, Freda and Johnstone, Alexandra M and Johnstone, Alexandra M and Lobley, Gerald E and Lobley, Gerald E and Parkhill, Julian and Parkhill, Julian and Flint, Harry J and Flint, Harry J},
title = {{Dominant and diet-responsive groups of bacteria within the human colonic microbiota.}},
journal = {The ISME Journal},
year = {2011},
volume = {5},
number = {2},
pages = {220--230},
month = feb
}
@article{Rivera:2010ce,
author = {Rivera, Angel J and Frank, Jeremy A and Stumpf, Rebecca and Salyers, Abigail A and Wilson, Brenda A and Olsen, Gary J and Leigh, Steven and Leigh, Steven},
title = {{Differences between the normal vaginal bacterial community of baboons and that of humans}},
journal = {American Journal of Primatology},
year = {2010},
volume = {73},
number = {2},
pages = {119--126},
month = sep
}
@article{Storz:2004vh,
author = {Storz, JF and Dubach, JM},
title = {{Natural selection drives altitudinal divergence at the albumin locus in deer mice, \textit{Peromyscus} \textit{maniculatus}}},
journal = {Evolution},
year = {2004},
volume = {58},
number = {6},
pages = {1342--1352}
}
@article{Cohas:2009ef,
author = {Cohas, A and Allaine, D},
title = {{Social structure influences extra-pair paternity in socially monogamous mammals}},
journal = {Biology Letters},
year = {2009},
volume = {5},
number = {3},
pages = {313--316},
month = may
}
@article{Nielsen:2002ii,
author = {Nielsen, S{\o}ren and Fr{\o}kiaer, J{\o}rgen and Fr{\o}kiaer, J{\o}rgen and Marples, David and Kwon, Tae-Hwan and Kwon, Tae-Hwan and Agre, Peter and Knepper, Mark A and Knepper, Mark A},
title = {{Aquaporins in the kidney: from molecules to medicine.}},
journal = {Physiological reviews},
year = {2002},
volume = {82},
number = {1},
pages = {205--244},
month = jan
}
@article{Gautier:2013dv,
author = {Gautier, Mathieu and Foucaud, Julien and Gharbi, Karim and Cezard, Timothee and Galan, Maxime and Loiseau, Anne and Loiseau, Anne and Thomson, Marian and Thomson, Marian and Pudlo, Pierre and Kerdelhu{\'e}, Carole and Estoup, Arnaud},
title = {{Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping}},
journal = {Molecular Ecology},
year = {2013},
volume = {22},
number = {14},
pages = {3766--3779},
month = jun
}
@article{Huse:2008kw,
author = {Huse, Susan M and Dethlefsen, Les and Huber, Julie A and Welch, David Mark and Relman, David A and Sogin, Mitchell L},
title = {{Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing}},
journal = {PLOS Genetics},
year = {2008},
volume = {4},
number = {11},
pages = {e1000255},
month = nov
}
@article{Edwards:2009hq,
author = {Edwards, Scott V},
title = {{Is a new and general theory of molecular systematics emerging?}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {1},
pages = {1--19},
month = jan
}
@article{Langley:2012ih,
author = {Langley, C H and Langley, C H and Stevens, K and Stevens, K and Cardeno, C and Cardeno, C and Lee, Y C G and Lee, Y C G and Schrider, D R and Schrider, D R and Pool, J E and Pool, J E and Langley, S A and Langley, S A and Suarez, C and Suarez, C and Corbett-Detig, R B and Corbett-Detig, R B and Kolaczkowski, B and Kolaczkowski, B and Fang, S and Fang, S and Nista, P M and Nista, P M and Holloway, A K and Holloway, A K and Kern, A D and Kern, A D and Dewey, C N and Dewey, C N and Song, Y S and Song, Y S and Hahn, M W and Hahn, M W and Begun, D J},
title = {{Genomic Variation in Natural Populations of \textit{Drosophila} \textit{melanogaster}}},
journal = {Genetics},
year = {2012},
volume = {192},
number = {2},
pages = {533--598},
month = oct
}
@article{Barbazuk:2007cn,
author = {Barbazuk, W Brad and Emrich, Scott J and Chen, Hsin D and Li, Li and Schnable, Patrick S},
title = {{SNP discovery via 454 transcriptome sequencing}},
journal = {The Plant Journal},
year = {2007},
volume = {51},
number = {5},
pages = {910--918},
month = jul
}
@article{Guo:fa,
author = {Guo, Yongchen and Guo, Yongchen and Bao, Yonghua and Bao, Yonghua and Meng, Qingwen and Meng, Qingwen and Hu, Xiaoxiang and Hu, Xiaoxiang and Meng, Qingyong and Meng, Qingyong and Ren, Liming and Ren, Liming and Li, Ning and Zhao, Yaofeng and Zhao, Yaofeng},
title = {{Immunoglobulin Genomics in the Guinea Pig (Cavia porcellus)}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {6},
pages = {e39298}
}
@article{Hawkins:2009en,
author = {Hawkins, C E and Racey, P A},
title = {{A novel mating system in a solitary carnivore: the fossa}},
journal = {Journal of Zoology},
year = {2009},
volume = {277},
number = {3},
pages = {196--204},
month = mar
}
@article{Pespeni:2012ju,
author = {Pespeni, M H and Pespeni, M H and Garfield, D A and Garfield, D A and Manier, M K and Manier, M K and Palumbi, S R},
title = {{Genome-wide polymorphisms show unexpected targets of natural selection}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1732},
pages = {1412--1420},
month = feb
}
@article{Mueller:2013cs,
author = {Mueller, Jakob C and Korsten, Peter and Hermannstaedter, Christine and Hermannstaedter, Christine and Feulner, Thomas and Feulner, Thomas and Dingemanse, Niels J and Matthysen, Erik and van Oers, Kees and van Overveld, Thijs and Patrick, Samantha C and Quinn, John L and Riemenschneider, Matthias and Riemenschneider, Matthias and Tinbergen, Joost M and Kempenaers, Bart},
title = {{Haplotype structure, adaptive history and associations with exploratory behaviour of the DRD4gene region in four great tit ( Parus major) populations}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = mar
}
@article{Zhang:2005fj,
author = {Zhang, JZ and Zhang, JZ and Nielsen, R and Yang, Ziheng},
title = {{Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level}},
journal = {Molecular Biology and Evolution},
year = {2005},
volume = {22},
number = {12},
pages = {2472--2479}
}
@article{Eriksson:2011tu,
author = {Eriksson, N and Tung, JY and Kiefer, AK and Hinds, DA},
title = {{Novel associations for hypothyroidism include known autoimmune risk loci}},
year = {2011}
}
@article{KalcounisRueppell:2007vr,
author = {Kalcounis-Rueppell, Matina C},
title = {{Relationship of basal metabolism and life history attributes in Neotomine-Peromyscine rodents (Cricetidae : Neotominae)}},
journal = {Ecoscience},
year = {2007},
volume = {14},
number = {3},
pages = {347--356}
}
@article{Nijland:2007gh,
author = {Nijland, M J and Schlabritz-Loutsevitch, N E and Hubbard, G B and Nathanielsz, P W and Cox, L A},
title = {{Non-human primate fetal kidney transcriptome analysis indicates mammalian target of rapamycin (mTOR) is a central nutrient-responsive pathway}},
journal = {The Journal of Physiology},
year = {2007},
volume = {579},
number = {3},
pages = {643--656},
month = jan
}
@article{Engqvist:2006gs,
author = {Engqvist, L and Reinhold, K},
title = {{Theoretical influence of female mating status and remating propensity on male sperm allocation patterns}},
journal = {Journal of Evolutionary Biology},
year = {2006},
volume = {19},
number = {5},
pages = {1448--1458},
month = sep
}
@article{Briskie:1992wb,
author = {Briskie, JV},
title = {{COPULATION PATTERNS AND SPERM COMPETITION IN THE POLYGYNANDROUS SMITHS LONGSPUR}},
journal = {Auk},
year = {1992},
volume = {109},
number = {3},
pages = {563--575}
}
@article{Zanette:2011bd,
author = {Zanette, Lorenzo R S and Zanette, Lorenzo R S and Field, Jeremy and Field, Jeremy},
title = {{Founders versus joiners: group formation in the paper wasp Polistes dominulus}},
journal = {Animal Behaviour},
year = {2011},
pages = {1--7},
month = sep
}
@article{Portnoy:2007cv,
author = {Portnoy, David S and Piercy, andrew N and Musick, John A and Burgess, George H and Graves, John E},
title = {{Genetic polyandry and sexual conflict in the sandbar shark, \textit{Carcharhinus plumbeus,} in the western North Atlantic and Gulf of Mexico}},
journal = {Molecular Ecology},
year = {2006},
volume = {16},
number = {1},
pages = {187--197},
month = oct
}
@article{Ribou:2012kg,
author = {Ribou, Anne-C{\'e}cile and Reinhardt, Klaus},
title = {{Reduced metabolic rate and oxygen radicals production in stored insect sperm.}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1736},
pages = {2196--2203},
month = jun
}
@article{Husmeier:2005bl,
author = {Husmeier, D},
title = {{Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models}},
journal = {Bioinformatics (Oxford, England)},
year = {2005},
volume = {21},
number = {Suppl 2},
pages = {ii166--ii172},
month = oct
}
@article{Atanur:2010cw,
author = {Atanur, S S and Birol, I and Guryev, V and Hirst, M and Hummel, O and Morrissey, C and Behmoaras, J and Fernandez-Suarez, X M and Johnson, M D and McLaren, W M and Patone, G and Petretto, E and Plessy, C and Rockland, K S and Rockland, C and Saar, K and Zhao, Y and Carninci, P and Flicek, P and Kurtz, T and Cuppen, E and Pravenec, M and Hubner, N and Jones, S J M and Birney, E and Aitman, T J},
title = {{The genome sequence of the spontaneously hypertensive rat: Analysis and functional significance}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {6},
pages = {791--803},
month = jun
}
@article{English:2012dx,
author = {English, Adam C and Richards, Stephen and Han, Yi and Wang, Min and Vee, Vanesa and Qu, Jiaxin and Qin, Xiang and Muzny, Donna M and Reid, Jeffrey G and Worley, Kim C and Gibbs, Richard A},
title = {{Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology.}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {11},
pages = {e47768}
}
@article{Punzalan:2010kt,
author = {Punzalan, David and Rodd, F Helen and Rowe, Locke},
title = {{Temporally Variable Multivariate Sexual Selection on Sexually Dimorphic Traits in a Wild Insect Population}},
journal = {The American Naturalist},
year = {2010},
volume = {175},
number = {4},
pages = {401--414},
month = apr
}
@article{Edwards:2009bc,
author = {Edwards, Scott V},
title = {{IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {1},
pages = {1--19},
month = jan
}
@article{Anonymous:WM0SxacQ,
title = {{Full genome gene expression analysis of the heat stress response in \textit{Drosophila} \textit{melanogaster}}},
year = {2014},
pages = {1--17},
month = feb
}
@article{Huang:2011bi,
author = {Huang, Yvonne J and Huang, Yvonne J and Nelson, Craig E. and Nelson, Craig E. and Brodie, Eoin L and DeSantis, Todd Z and DeSantis, Todd Z and Baek, Marshall S and Baek, Marshall S and Liu, Jane and Liu, Jane and Woyke, Tanja and Woyke, Tanja and Allgaier, Martin and Allgaier, Martin and Bristow, Jim and Bristow, Jim and Wiener-Kronish, Jeanine P. and Wiener-Kronish, Jeanine P. and Sutherland, E. Rand Sutherland, E. Rand King, Tonya S. and King, Tonya S. and Icitovic, Nikolina and Icitovic, Nikolina and Martin, Richard J. and Martin, Richard J. and Calhoun, William J. and Calhoun, William J. and Castro, Mario and Castro, Mario and Denlinger, Loren C. and Denlinger, Loren C. and DiMango, Emily and DiMango, Emily and Kraft, Monica and Kraft, Monica and Peters, Stephen P. and Peters, Stephen P. and Wasserman, Stephen I. and Wasserman, Stephen I. and Wechsler, Michael E. and Wechsler, Michael E. and Boushey, Homer A and Boushey, Homer A and Lynch, Susan V and Lung, Natl Heart and Lung, Natl Heart},
title = {{Airway microbiota and bronchial hyperresponsiveness in patients with suboptimally controlled asthma}},
journal = {Journal of Allergy and Clinical Immunology},
year = {2011},
volume = {127},
number = {2},
pages = {372--U689}
}
@article{Bijma:2010ho,
author = {Bijma, P and Aanen, D K},
title = {{Assortment, Hamilton's rule and multilevel selection}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2010},
volume = {277},
number = {1682},
pages = {673--675},
month = jan
}
@article{Bowen:2002ev,
author = {Bowen, Lizabeth and Aldridge, Brian and Gulland, Frances and Woo, Jennifer and Van Bonn, William and DeLong, Robert and Stott, Jeffrey and Johnson, Michael},
title = {{Molecular characterization of expressed DQA and DQB genes in the California sea lion ( Zalophus californianus )}},
journal = {Immunogenetics},
year = {2002},
volume = {54},
number = {5},
pages = {332--347},
month = aug
}
@article{Marraffini:2010eo,
author = {Marraffini, Luciano A and Sontheimer, Erik J},
title = {{CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea}},
journal = {Nature Reviews Genetics},
year = {2010},
volume = {11},
number = {3},
pages = {181--190},
month = feb
}
@article{Soutourina:2005fv,
author = {Soutourina, Olga and Cheval, Lydie and Doucet, Alain},
title = {{Global analysis of gene expression in mammalian kidney}},
journal = {Pfl{\"u}gers Archiv - European Journal of Physiology},
year = {2004},
volume = {450},
number = {1},
pages = {13--25},
month = dec
}
@article{Palmieri:2009dc,
author = {Palmieri, Nicola and Schl{\"o}tterer, Christian and Aramayo, Rodolfo},
title = {{Mapping Accuracy of Short Reads from Massively Parallel Sequencing and the Implications for Quantitative Expression Profiling}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6323},
month = jul
}
@article{Reverter:2010je,
author = {Reverter, Antonio and Hudson, Nicholas J and Nagaraj, Shivashankar H and Nagaraj, Shivashankar H and Perez-Enciso, Miguel and Dalrymple, Brian P},
title = {{Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {7},
pages = {896--904}
}
@article{Liu:2011ez,
author = {Liu, Yongchao and Schmidt, Bertil and Maskell, Douglas L},
title = {{Parallelized short read assembly of large genomes using \textit{de Bruijn} graphs.}},
journal = {BMC Bioinformatics},
year = {2011},
volume = {12},
number = {1},
pages = {354},
month = aug
}
@article{Tryjanowski:2007uo,
author = {Tryjanowski, Piotr and Antczak, Marcin and Hromada, Martin},
title = {{More secluded places for extra-pair copulations in the great grey shrike Lanius excubitor}},
journal = {Behaviour},
year = {2007},
volume = {144},
pages = {23--31}
}
@article{Schwagmeyer:2008iw,
author = {Schwagmeyer, P L and Bartlett, Terri L and Schwabl, Hubert G},
title = {{Dynamics of House Sparrow Biparental Care: What Contexts Trigger Partial Compensation?}},
journal = {Ethology},
year = {2008},
volume = {114},
number = {5},
pages = {459--468},
month = may
}
@article{Gilbert:2010gp,
author = {Gilbert, James D J and Manica, andrea},
title = {{Parental Care Trade-offs and Life-History Relationships in Insects}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {2},
pages = {212--226},
month = aug
}
@article{Dixon:1994vd,
author = {Dixon, A and Ross, D and O'Malley, SLC and Burke, T},
title = {{Paternal Investment Inversely Related to Degree of Extra-Pair Paternity in the Reed Bunting}},
journal = {Nature},
year = {1994},
volume = {371},
number = {6499},
pages = {698--700}
}
@article{Schmoll:2007boa,
author = {Schmoll, T and Mund, V and Dietrich-Bischoff, V and Winkel, W and Lubjuhn, T},
title = {{Male age predicts extrapair and total fertilization success in the socially monogamous coal tit}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {6},
pages = {1073--1081},
month = aug
}
@article{Antonovics:2012fa,
author = {Antonovics, Janis and Boots, Mike and Ebert, Dieter and Ebert, Dieter and Koskella, Britt and Koskella, Britt and Poss, Mary and Poss, Mary and Sadd, Ben M},
title = {{THE ORIGIN OF SPECIFICITY BY MEANS OF NATURAL SELECTION: EVOLVED AND NON-HOST RESISTANCE IN HOST-PATHOGEN INTERACTIONS}},
journal = {Evolution},
year = {2012},
pages = {no--no},
month = sep
}
@article{PerezdelaFuente:2012du,
author = {P{\'e}rez-de la Fuente, Ricardo and P{\'e}rez-de la Fuente, Ricardo and Delcl{\`o}s, Xavier and Delcl{\`o}s, Xavier and Pe{\~n}alver, Enrique and Pe{\~n}alver, Enrique and Speranza, Mariela and Speranza, Mariela and Wierzchos, Jacek and Wierzchos, Jacek and Ascaso, Carmen and Ascaso, Carmen and Engel, Michael S and Engel, Michael S},
title = {{Early evolution and ecology of camouflage in insects.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {52},
pages = {21414--21419},
month = dec
}
@article{Anonymous:2012ca,
title = {{Genomes against parasites}},
journal = {Nature Genetics},
year = {2012},
volume = {44},
number = {9},
pages = {961--961},
month = sep
}
@article{Boyd:2007in,
author = {Boyd, R and Mathew, S},
title = {{BEHAVIOR: A Narrow Road to Cooperation}},
journal = {Science (New York, NY)},
year = {2007},
volume = {316},
number = {5833},
pages = {1858--1859},
month = jun
}
@article{Zhou:2014ew,
author = {Zhou, Xiaofan and Rokas, Antonis},
title = {{Prevention, Diagnosis, and Treatment of High Throughput Sequencing Data Pathologies}},
journal = {Molecular Ecology},
year = {2014},
pages = {n/a--n/a},
month = jan
}
@article{Bitton:2007cp,
author = {Bitton, Pierre-Paul and O'Brien, Erin L and Dawson, Russell D},
title = {{Plumage brightness and age predict extrapair fertilization success of male tree swallows, Tachycineta bicolor}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {6},
pages = {1777--1784},
month = dec
}
@article{Kingsbury:2012gk,
author = {Kingsbury, Marcy A and Kingsbury, Marcy A and Gleason, Erin D and Gleason, Erin D and Ophir, Alexander G and Ophir, Alexander G and Phelps, Steven M and Phelps, Steven M and Young, Larry J and Young, Larry J and Marler, Catherine A and Marler, Catherine A},
title = {{Monogamous and Promiscuous Rodent Species Exhibit Discrete Variation in the Size of the Medial Prefrontal Cortex}},
journal = {Brain, Behavior and Evolution},
year = {2012}
}
@article{Parsch:2010bk,
author = {Parsch, J and Novozhilov, S and Saminadin-Peter, S S and Wong, K M and andolfatto, P},
title = {{On the Utility of Short Intron Sequences as a Reference for the Detection of Positive and Negative Selection in \textit{Drosophila}}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {6},
pages = {1226--1234},
month = may
}
@article{Lyko:2010dra,
author = {Lyko, Frank and Foret, Sylvain and Kucharski, Robert and Wolf, Stephan and Falckenhayn, Cassandra and Maleszka, Ryszard},
title = {{The Honey Bee Epigenomes: Differential Methylation of Brain DNA in Queens and Workers}},
journal = {PLOS Biology},
year = {2010},
volume = {8},
number = {11},
pages = {e1000506},
month = nov
}
@article{Jokela:2010dy,
author = {Jokela, M and Rotkirch, A and Rickard, I J and Pettay, J and Lummaa, V},
title = {{Serial monogamy increases reproductive success in men but not in women}},
journal = {Behavioral Ecology},
year = {2010},
volume = {21},
number = {5},
pages = {906--912},
month = aug
}
@article{Sonna:2002dc,
author = {Sonna, Larry A and Fujita, Jun and Gaffin, Stephen L and Lilly, Craig M},
title = {{Invited review: Effects of heat and cold stress on mammalian gene expression.}},
journal = {Journal of applied physiology (Bethesda, Md. : 1985)},
year = {2002},
volume = {92},
number = {4},
pages = {1725--1742},
month = apr
}
@article{Ingram:2002uh,
author = {Ingram, KK},
title = {{Plasticity in queen number and social structure in the invasive Argentine ant (Linepithema humile)}},
journal = {Evolution},
year = {2002},
volume = {56},
number = {10},
pages = {2008--2016}
}
@article{McCormick:2006ut,
author = {McCormick, S D and Bradshaw, D},
title = {{Hormonal control of salt and water balance in vertebrates}},
journal = {General and Comparative Endocrinology},
year = {2006}
}
@article{Kleven:2008jb,
author = {Kleven, Oddmund and Bjerke, Bjorn-Aksel and Lifjeld, Jan T},
title = {{Genetic monogamy in the Common Crossbill (Loxia curvirostra)}},
journal = {Journal of Ornithology},
year = {2008},
volume = {149},
number = {4},
pages = {651--654},
month = feb
}
@article{Evans:2009kl,
author = {Evans, M L and Neff, B D and Heath, D D},
title = {{MHC genetic structure and divergence across populations of Chinook salmon (Oncorhynchus tshawytscha)}},
journal = {Heredity},
year = {2009},
volume = {104},
number = {5},
pages = {449--459},
month = sep
}
@article{andersson:2009fs,
author = {andersson, Leif},
title = {{Genome-wide association analysis in domestic animals: a powerful approach for genetic dissection of trait loci}},
journal = {Genetica},
year = {2008},
volume = {136},
number = {2},
pages = {341--349},
month = aug
}
@article{Jesseau:2009je,
author = {Jesseau, Stephanie A and Holmes, Warren G and Lee, Theresa M},
title = {{Communal nesting and discriminative nursing by captive degus, Octodon degus}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {5},
pages = {1183--1188},
month = nov
}
@article{Kao:2009hua,
author = {Kao, W C and Stevens, K and Song, Y S},
title = {{BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {10},
pages = {1884--1895},
month = oct
}
@article{Schmidt:2011dv,
author = {Schmidt, Bettina and Schmidt, Bettina and Mulder, Imke E and Mulder, Imke E and Musk, Corran C and Musk, Corran C and Aminov, Rustam I and Aminov, Rustam I and Lewis, Marie and Lewis, Marie and Stokes, Christopher R and Stokes, Christopher R and Bailey, Mick and Bailey, Mick and Prosser, James I and Prosser, James I and Gill, Bhupinder P and Gill, Bhupinder P and Pluske, John R and Pluske, John R and Kelly, Denise and Kelly, Denise},
title = {{Establishment of Normal Gut Microbiota Is Compromised under Excessive Hygiene Conditions}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {12},
pages = {e28284},
month = dec
}
@article{Bonneaud:2012iv,
author = {Bonneaud, Camille and Balenger, Susan L and ZHANG, JIANGWEN and ZHANG, JIANGWEN and Edwards, Scott V and HILL, GEOFFREY E},
title = {{Innate immunity and the evolution of resistance to an emerging infectious disease in a wild bird.}},
journal = {Molecular Ecology},
year = {2012},
month = apr
}
@article{Widemo:1998wn,
author = {Widemo, F},
title = {{Competition for females on leks when male competitive abilities differ: empirical test of a model}},
journal = {Behavioral Ecology},
year = {1998},
volume = {9},
number = {5},
pages = {427--431}
}
@article{Seyednasrollah:2013km,
author = {Seyednasrollah, F and Laiho, A and Elo, L L},
title = {{Comparison of software packages for detecting differential expression in RNA-seq studies}},
journal = {Briefings In Bioinformatics},
year = {2013},
month = dec
}
@article{ALATALO:1981ui,
author = {ALATALO, RV and CARLSON, A and LUNDBERG, A and ULFSTRAND, S},
title = {{THE CONFLICT BETWEEN MALE POLYGAMY AND FEMALE MONOGAMY - THE CASE OF THE PIED FLYCATCHER FICEDULA-HYPOLEUCA}},
journal = {The American Naturalist},
year = {1981},
volume = {117},
number = {5},
pages = {738--753}
}
@article{Kingsley:2009kk,
author = {Kingsley, Evan P and Manceau, Marie and Wiley, Christopher D and Hoekstra, Hopi E and Borevitz, Justin O},
title = {{Melanism in \textit{Peromyscus} Is Caused by Independent Mutations in Agouti}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6435},
month = jul
}
@article{Oliver:2006ds,
author = {Oliver, Matthew K and Piertney, Stuart B},
title = {{Isolation and characterization of a MHC class II DRB locus in the European water vole (Arvicola terrestris)}},
journal = {Immunogenetics},
year = {2006},
volume = {58},
number = {5-6},
pages = {390--395},
month = may
}
@article{Whittingham:2000vc,
author = {Whittingham, LA and Dunn, PO},
title = {{offspring sex ratios in tree swallows: females in better condition produce more sons}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {8},
pages = {1123--1129}
}
@article{Zhu:2008hv,
author = {Zhu, Wan-Long and Zhu, Wan-Long and Jia, Ting and Jia, Ting and Lian, Xiao and Lian, Xiao and Wang, Zheng-Kun and Wang, Zheng-Kun},
title = {{Evaporative water loss and energy metabolic in two small mammals, voles (Eothenomys miletus) and mice (Apodemus chevrieri), in Hengduan mountains region}},
journal = {Journal of Thermal Biology},
year = {2008},
volume = {33},
number = {6},
pages = {324--331},
month = aug
}
@article{WynneEdwards:2007cf,
author = {Wynne-Edwards, Katherine E and Timonin, Mary E},
title = {{Paternal care in rodents: Weakening support for hormonal regulation of the transition to behavioral fatherhood in rodent animal models of biparental care}},
journal = {Hormones and Behavior},
year = {2007},
volume = {52},
number = {1},
pages = {114--121},
month = jun
}
@article{Gilchrist:2006hx,
author = {Gilchrist, Jason S},
title = {{Reproductive success in a low skew, communal breeding mammal: the banded mongoose, Mungos mungo}},
journal = {Behavioral Ecology and Sociobiology},
year = {2006},
volume = {60},
number = {6},
pages = {854--863},
month = jul
}
@article{IvanPerez:2009vm,
author = {Ivan Perez, S and Ivan Perez, S and Felizola Diniz-Filho, Jose Alexandre and Felizola Diniz-Filho, Jose Alexandre and Rohlf, F James and Rohlf, F James and dos Reis, Sergio Furtado and dos Reis, Sergio Furtado},
title = {{Ecological and evolutionary factors in the morphological diversification of South American spiny rats}},
journal = {Biological Journal of The Linnean Society},
year = {2009},
volume = {98},
number = {3},
pages = {646--660}
}
@article{Anonymous:2013kz,
title = {{Mol Ecol 2013 Crawford}},
year = {2013},
pages = {1--48},
month = oct
}
@article{Eisen:1998ue,
author = {Eisen, MB and Spellman, PT and Brown, PO and Botstein, D},
title = {{Cluster analysis and display of genome-wide expression patterns}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1998},
volume = {95},
number = {25},
pages = {14863--14868}
}
@article{Varricchio:2008bj,
author = {Varricchio, D J and Moore, J R and Erickson, G M and Norell, M A and Jackson, F D and Borkowski, J J},
title = {{Avian Paternal Care Had Dinosaur Origin}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5909},
pages = {1826--1828},
month = dec
}
@article{Heinsohn:2000wp,
author = {Heinsohn, R and Dunn, P and Legge, S and Double, M},
title = {{Coalitions of relatives and reproductive skew in cooperatively breeding white-winged choughs}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {2000},
volume = {267},
number = {1440},
pages = {243--249}
}
@article{Bazile:2012hu,
author = {Bazile, V and Moran, JA and Le Mogu{\'e}dec, G and Marshall, DJ},
title = {{A Carnivorous Plant Fed by Its Ant Symbiont: A Unique Multi-Faceted Nutritional Mutualism}},
journal = {PLOS ONE},
year = {2012}
}
@book{Anonymous:2010vg,
title = {{Research in Computational {\ldots}}},
publisher = {Springer Berlin Heidelberg},
year = {2010},
address = {Berlin, Heidelberg}
}
@article{Dabritz:2007wq,
author = {Dabritz, Haydee A and Miller, Melissa A and Packham, andrea E and Rejmanek, Daniel and Leutenegger, Christian M and Gardner, Ian A and Atwill, E Robert and Atwill, E Robert and Conrad, Patricia A and Conrad, Patricia A},
title = {{Experimental infection of \textit{Peromyscus} \textit{californicus} with Toxoplasma gondii}},
journal = {Journal of Parasitology},
year = {2007},
volume = {93},
number = {6},
pages = {1360--1364}
}
@article{Ditchkoff:2005vm,
author = {Ditchkoff, SS and Hoofer, SR and Lochmiller, RL and Masters, RE and van den Bussche, RA},
title = {{MHC-DRB evolution provides insight into parasite resistance in white-tailed deer}},
journal = {Southwestern Naturalist},
year = {2005},
volume = {50},
number = {1},
pages = {57--64}
}
@article{Richter:2010ei,
author = {Richter, Klaus and Haslbeck, Martin and Buchner, Johannes},
title = {{The Heat Shock Response: Life on the Verge of Death}},
journal = {Molecular Cell},
year = {2010},
volume = {40},
number = {2},
pages = {253--266},
month = oct
}
@article{Conesa:2005hq,
author = {Conesa, A and Gotz, S and Garcia-Gomez, J M and Terol, J and Talon, M and Robles, M},
title = {{Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research}},
journal = {Bioinformatics (Oxford, England)},
year = {2005},
volume = {21},
number = {18},
pages = {3674--3676},
month = aug
}
@article{Buonaccorsi:2004df,
author = {Buonaccorsi, V P and Westerman, M and Stannard, J and Kimbrell, C and Lynn, E and Vetter, R D},
title = {{Molecular genetic structure suggests limited larval dispersal in grass rockfish, Sebastes rastrelliger}},
journal = {Marine Biology},
year = {2003},
volume = {-1},
number = {1},
pages = {1--1},
month = jun
}
@article{Ronquist:2003hx,
author = {Ronquist, Fredrik and Huelsenbeck, John P},
title = {{MrBayes 3: Bayesian phylogenetic inference under mixed models}},
journal = {Bioinformatics (Oxford, England)},
year = {2003},
volume = {19},
number = {12},
pages = {1572--1574}
}
@article{Gershman:2008ic,
author = {Gershman, S N},
title = {{Sex-specific differences in immunological costs of multiple mating in Gryllus vocalis field crickets}},
journal = {Behavioral Ecology},
year = {2008},
volume = {19},
number = {4},
pages = {810--815},
month = jul
}
@article{Bowers:2009dz,
author = {Bowers, Jayson and Mitchell, Judith and Beer, Eric and Buzby, Philip R and Causey, Marie and Efcavitch, J William and Jarosz, Mirna and Krzymanska-Olejnik, Edyta and Kung, Li and Lipson, Doron and Lowman, Geoffrey M and Marappan, Subramanian and Mcinerney, Peter and Platt, Adam and Roy, Atanu and Siddiqi, Suhaib M and Steinmann, Kathleen and Thompson, John F},
title = {{Virtual terminator nucleotides for next-generation DNA sequencing}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {8},
pages = {593--595},
month = jul
}
@article{Moffett:2012da,
author = {Moffett, M W},
title = {{Supercolonies of billions in an invasive ant: What is a society?}},
journal = {Behavioral Ecology},
year = {2012},
month = apr
}
@article{Klemme:2007er,
author = {Klemme, Ines and Yl{\"o}nen, Hannu and Eccard, Jana A},
title = {{Reproductive success of male bank voles (Clethrionomys glareolus): the effect of operational sex ratio and body size}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {61},
number = {12},
pages = {1911--1918},
month = jun
}
@article{Hosken:2009gd,
author = {Hosken, D J and Stockley, P and Tregenza, T and Wedell, N},
title = {{Monogamy and the Battle of the Sexes}},
journal = {Annual Review of Entomology},
year = {2009},
volume = {54},
number = {1},
pages = {361--378},
month = jan
}
@article{Anonymous:5QWROsaP,
title = {{arXiv:1401.5383v1 [q-bio.QM] 21 Jan 2014}},
year = {2014},
pages = {1--14},
month = jan
}
@article{Maroja:2009bu,
author = {Maroja, Luana S and andres, Jose A and Harrison, Richard G},
title = {{GENEALOGICAL DISCORDANCE AND PATTERNS OF INTROGRESSION AND SELECTION ACROSS A CRICKET HYBRID ZONE}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {11},
pages = {2999--3015},
month = nov
}
@article{Sefc:2007cz,
author = {Sefc, Kristina M and Baric, Sanja and Salzburger, Walter and Sturmbauer, Christian},
title = {{Species-Specific Population Structure in Rock-Specialized Sympatric Cichlid Species in Lake Tanganyika, East Africa}},
journal = {Journal of Molecular Evolution},
year = {2006},
volume = {64},
number = {1},
pages = {33--49},
month = dec
}
@article{Crespi:2001vd,
author = {Crespi, BJ},
title = {{The evolution of social behavior in microorganisms}},
journal = {Trends In Ecology {\&} Evolution},
year = {2001},
volume = {16},
number = {4},
pages = {178--183}
}
@article{Vaclav:2003dt,
author = {Vaclav, R},
title = {{Food supplementation affects extrapair paternity in house sparrows (Passer domesticus)}},
journal = {Behavioral Ecology},
year = {2003},
volume = {14},
number = {5},
pages = {730--735},
month = sep
}
@article{ONeil:2010bk,
author = {O'Neil, Shawn T and Dzurisin, Jason DK and Carmichael, Rory D and Lobo, Neil F and Emrich, Scott J and Hellmann, Jessica J},
title = {{Population-level transcriptome sequencing of nonmodel organisms Erynnis propertius and Papilio zelicaon}},
journal = {BMC Genomics},
year = {2010},
volume = {11},
number = {1},
pages = {310}
}
@article{Meshiry:2011wg,
author = {Meshiry, MG and Meshiry, MG and RANDALL, JA},
title = {{Kinship associations of a solitary rodent, \textit{Dipodomys} ingens, at fluctuating population densities}},
journal = {Animal Behaviour},
year = {2011}
}
@article{TobyKiers:2010ex,
author = {Toby Kiers, E and Palmer, Todd M and Ives, Anthony R and Bruno, John F and Bronstein, Judith L},
title = {{Mutualisms in a changing world: an evolutionary perspective}},
journal = {Ecology Letters},
year = {2010},
volume = {13},
number = {12},
pages = {1459--1474},
month = oct
}
@article{Mills:2007fc,
author = {Mills, S C and Grapputo, A and Koskela, E and Mappes, T},
title = {{Quantitative measure of sexual selection with respect to the operational sex ratio: a comparison of selection indices}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1606},
pages = {143--150},
month = jan
}
@article{Nielsen:1995cb,
author = {Nielsen, S and Agre, P},
title = {{The aquaporin family of water channels in kidney.}},
journal = {Kidney international},
year = {1995}
}
@article{Flicek:2009dl,
author = {Flicek, Paul and Birney, Ewan},
title = {{Sense from sequence reads: methods for alignment and assembly}},
journal = {Nature Methods},
year = {2009},
volume = {6},
number = {11s},
pages = {S6--S12},
month = nov
}
@article{MunguiaVega:2009gs,
author = {Munguia-Vega, A and Rodriguez-Estrella, R and NACHMAN, M and Culver, M},
title = {{Polymorphic microsatellite loci for the sand pocket mouse Chaetodipus arenarius, an endemic from the Baja California Peninsula}},
journal = {Molecular Ecology Resources},
year = {2009},
volume = {9},
number = {1},
pages = {305--307},
month = jan
}
@article{Steiner:2008gj,
author = {Steiner, C C and Rompler, H and Boettger, L M and Schoneberg, T and Hoekstra, H E},
title = {{The Genetic Basis of Phenotypic Convergence in Beach Mice: Similar Pigment Patterns but Different Genes}},
journal = {Molecular Biology and Evolution},
year = {2008},
volume = {26},
number = {1},
pages = {35--45},
month = oct
}
@article{Kanginakudru:2008to,
author = {Kanginakudru, S and Metta, M and Jakati, RD and Nagaraju, J},
title = {{Genetic evidence from Indian red jungle fowl corroborates multiple domestication of modern day chicken}},
journal = {BMC Evolutionary Biology},
year = {2008},
volume = {8},
number = {1},
pages = {174}
}
@article{Blanchette:2009fm,
author = {Blanchette, Marco and Green, Richard E and MacArthur, Stewart and Brooks, Angela N and Brenner, Steven E and Eisen, Michael B and Rio, Donald C},
title = {{Genome-wide Analysis of Alternative Pre-mRNA Splicing and RNA-Binding Specificities of the \textit{Drosophila} hnRNP A/B Family Members}},
journal = {Molecular Cell},
year = {2009},
volume = {33},
number = {4},
pages = {438--449},
month = feb
}
@article{Jones:2008hl,
author = {Jones, Thomas C and Riechert, Susan E},
title = {{Patterns of reproductive success associated with social structure and microclimate in a spider system}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {6},
pages = {2011--2019},
month = dec
}
@article{Yu:2009dc,
author = {Yu, Qingyi and Tong, Eric and Skelton, Rachel L and Bowers, John E and Jones, Meghan R and Murray, Jan E and Hou, Shaobin and Guan, Peizhu and Acob, Ricelle A and Luo, Ming-Cheng and Moore, Paul H and Alam, Maqsudul and Paterson, andrew H and Ming, Ray},
title = {{A physical map of the papaya genome with integrated genetic map and genome sequence}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {371}
}
@article{Orr:1998vj,
author = {Orr, H A},
title = {{The population genetics of adaptation: The distribution of factors fixed during adaptive evolution}},
journal = {Evolution},
year = {1998},
volume = {52},
pages = {935--949},
month = aug
}
@article{Chiba:2002uk,
author = {Chiba, A and Nakamura, M},
title = {{Female cloacal protuberance of the polygynandrous Alpine Accentor Prunella collaris: histological features and possible functional significance}},
journal = {Ibis},
year = {2002},
volume = {144},
number = {2},
pages = {E96--E104}
}
@article{Peterson:2012db,
author = {Peterson, Brant K and Weber, Jesse N and Kay, Emily H and Fisher, Heidi S and Hoekstra, Hopi E},
title = {{Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species.}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {5},
pages = {e37135}
}
@article{Arsenijevic:1985bi,
author = {Arsenijevic, Yvan and Baertschi, Alex J},
title = {{Activation of the hypothalamo-neurohypophysial system by hypertonic superfusion of the rat mesentery}},
journal = {Brain Research},
year = {1985},
volume = {347},
number = {1},
pages = {169--172},
month = nov
}
@article{Wenseleers:2007ba,
journal = {Molecular Ecology},
year = {2007},
volume = {16},
number = {15},
month = aug
}
@article{Schmidt:2009gc,
author = {Schmidt, Jennifer V and Schmidt, Claudia L and Ozer, Fusun and Ernst, Robin E and Feldheim, Kevin A and Ashley, Mary V and Levine, Marie and Desalle, Robert},
title = {{Low Genetic Differentiation across Three Major Ocean Populations of the Whale Shark, Rhincodon typus}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {4},
pages = {e4988},
month = apr
}
@article{Dantzer:2013eu,
author = {Dantzer, B and Newman, A E M and Boonstra, R and Palme, R and Boutin, S and Humphries, M M and McAdam, A G},
title = {{Density Triggers Maternal Hormones That Increase Adaptive offspring Growth in a Wild Mammal}},
journal = {Science (New York, NY)},
year = {2013},
volume = {340},
number = {6137},
pages = {1215--1217},
month = jun
}
@article{Kokko:2006km,
author = {Kokko, H and Jennions, M and Brooks, R},
title = {{Unifying and testing models of sexual selection}},
journal = {Annual Reviews},
year = {2006},
volume = {37},
pages = {43--66}
}
@article{Anonymous:2008un,
author = {Lighton, JRB and Feener Jr, D H},
title = {{Water-loss rate and cuticular permeability in foragers of the desert ant Pogonomyrmex rugosus}},
journal = {Physiological Zoology},
year = {1989}
}
@article{Browne:2001wn,
author = {Browne, G and Allan, P and Madhavan, K K and Winney, R},
title = {{Exercise-induced anuria in a renal allograft recipient}},
journal = {Nephrology, dialysis, transplantation : official publication of the European Dialysis and Transplant Association - European Renal Association},
year = {2001},
volume = {16},
number = {12},
pages = {2431--2433},
month = dec
}
@article{Petit:2009kn,
author = {Petit, T and Spergser, J and Rosengarten, R and Aurich, J},
title = {{Prevalence of Potentially Pathogenic Bacteria as Genital Pathogens in Dairy Cattle}},
journal = {Reproduction In Domestic Animals},
year = {2009},
volume = {44},
number = {1},
pages = {88--91},
month = feb
}
@article{deSolla:1999uq,
author = {de Solla, SR and Bonduriansky, R and Brooks, RJ},
title = {{Eliminating autocorrelation reduces biological relevance of home range estimates}},
journal = {Journal of Animal Ecology},
year = {1999},
volume = {68},
number = {2},
pages = {221--234}
}
@article{Villavicencio:2009bl,
author = {Villavicencio, Camila P and Marquez, I Natalia and Quispe, RenE and V{\'a}squez, Rodrigo A},
title = {{Familiarity and phenotypic similarity influence kin discrimination in the social rodent Octodon degus}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {2},
pages = {377--384},
month = aug
}
@article{Hasegawa:1994wx,
author = {Hasegawa, M and Kishino, H},
title = {{Accuracies of the Simple Methods for Estimating the Bootstrap Probability of a Maximum-Likelihood Tree}},
journal = {Molecular Biology and Evolution},
year = {1994},
volume = {11},
number = {1},
pages = {142--145}
}
@article{Verkman:2005ub,
author = {Verkman, AS},
title = {{More than just water channels: unexpected cellular roles of aquaporins}},
journal = {Journal of cell science},
year = {2005}
}
@article{Ardren:2003um,
author = {Ardren, WR and Kapuscinski, AR},
title = {{Demographic and genetic estimates of effective population size (N$_{e}$) reveals genetic compensation in steelhead trout}},
journal = {Molecular Ecology},
year = {2003},
volume = {12},
number = {1},
pages = {35--49}
}
@article{Panksepp:2007gj,
author = {Panksepp, Jaak and Panksepp, Jaak and Burgdorf, Jeffrey and Burgdorf, Jeffrey and Beinfeld, Margery C. and Beinfeld, Margery C. and Kroes, Roger A. and Kroes, Roger A. and Moskal, Joseph R. and Moskal, Joseph R.},
title = {{Brain regional neuropeptide changes resulting from social defeat}},
journal = {Behavioral Neuroscience},
year = {2007},
volume = {121},
number = {6},
pages = {1364--1371}
}
@article{Price:2012bj,
author = {Price, D C and Price, D C and Chan, C X and Yoon, H S and Yoon, H S and Yang, E C and Yang, E C and Qiu, H and Qiu, H and Weber, A P M and Weber, A P M and Schwacke, R and Schwacke, R and Gross, J and Gross, J and Blouin, N A and Lane, C and Lane, C and Reyes-Prieto, A and Reyes-Prieto, A and Durnford, D G and Durnford, D G and Neilson, J A D and Neilson, J A D and Lang, B F and Lang, B F and Burger, G and Burger, G and Steiner, J M and Steiner, J M and Loffelhardt, W and Loffelhardt, W and Meuser, J E and Meuser, J E and Posewitz, M C and Posewitz, M C and Ball, S and Ball, S and Arias, M C and Arias, M C and Henrissat, B and Henrissat, B and Coutinho, P M and Coutinho, P M and Rensing, S A and Rensing, S A and Symeonidi, A and Symeonidi, A and Doddapaneni, H and Doddapaneni, H and Green, B R and Green, B R and Rajah, V D and Rajah, V D and Boore, J and Boore, J and Bhattacharya, D},
title = {{Cyanophora paradoxa Genome Elucidates Origin of Photosynthesis in Algae and Plants}},
journal = {Science (New York, NY)},
year = {2012},
volume = {335},
number = {6070},
pages = {843--847},
month = feb
}
@article{Anonymous:Dw8ezrSy,
title = {{Long-term monitoring and experimental manipulation of a Chihuahuan Desert ecosystem near Portal, Arizona, USA}},
year = {2009},
pages = {1--1},
month = may
}
@article{Verkman:2002ww,
author = {Verkman, A S},
title = {{Physiological importance of aquaporin water channels}},
journal = {Annals of medicine},
year = {2002},
volume = {34},
number = {3},
pages = {192--200}
}
@article{Birkhead:2007cy,
author = {Birkhead, Tim R and Brillard, Jean-Pierre},
title = {{Reproductive isolation in birds: postcopulatory prezygotic barriers}},
journal = {Trends In Ecology {\&} Evolution},
year = {2007},
volume = {22},
number = {5},
pages = {266--272},
month = may
}
@article{Trapnell:2012kp,
author = {Trapnell, Cole and Roberts, Adam and Goff, Loyal and Pertea, Geo and Kim, Daehwan and Kelley, David R and Pimentel, Harold and Salzberg, Steven L and Rinn, John L and Pachter, Lior},
title = {{Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.}},
journal = {Nature protocols},
year = {2012},
volume = {7},
number = {3},
pages = {562--578},
month = mar
}
@article{Lessa:1998ww,
author = {Lessa, EP and Cook, JA},
title = {{The molecular phylogenetics of tuco-tucos (genus \textit{Ctenomys}, Rodentia : Octodontidae) suggests an early burst of speciation}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {1998},
volume = {9},
number = {1},
pages = {88--99}
}
@article{Mohammad:2009hc,
author = {Mohammad, T and Xue, Y and Evison, M and Tyler-Smith, C},
title = {{Genetic structure of nomadic Bedouin from Kuwait}},
journal = {Heredity},
year = {2009},
volume = {103},
number = {5},
pages = {425--433},
month = jul
}
@article{Foster:2004ef,
author = {Foster, Kevin R and Shaulsky, Gad and Strassmann, Joan E and Queller, David C and Thompson, Chris R L},
title = {{Pleiotropy as a mechanism to stabilize cooperation}},
journal = {Nature},
year = {2004},
volume = {431},
number = {7009},
pages = {693--696},
month = oct
}
@article{Toth:2007cr,
author = {Toth, Amy L and Varala, Kranthi and Newman, Thomas C and Miguez, Fernando E and Hutchison, Stephen K and Willoughby, David A and Simons, Jan Fredrik and Egholm, Michael and Hunt, James H and Hudson, Matthew E and Robinson, Gene E},
title = {{Wasp gene expression supports an evolutionary link between maternal behavior and eusociality.}},
journal = {Science (New York, NY)},
year = {2007},
volume = {318},
number = {5849},
pages = {441--444},
month = oct,
annote = {REFS:
14
16
17
18
This is it, the hub and spokes approach.. }
}
@article{Anonymous:lPXRZ4fx,
title = {{Identification and characterization of 14 polymorphic microsatellite loci for a member of the Herpestidae (Mungos mungo)}},
year = {2009},
pages = {1--3},
month = oct
}
@article{Kikuchi:2012fk,
author = {Kikuchi, Yoshitomo and Hayatsu, Masahito and Hosokawa, Takahiro and Nagayama, Atsushi and Tago, Kanako and Fukatsu, Takema},
title = {{Symbiont-mediated insecticide resistance.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {22},
pages = {8618--8622},
month = may
}
@article{Barta:2004gh,
author = {Barta, Z},
title = {{The effects of predation risk on the use of social foraging tactics}},
journal = {Animal Behaviour},
year = {2004},
volume = {67},
number = {2},
pages = {301--308},
month = feb
}
@article{Go:2002en,
author = {Go, Yasuhiro and Satta, Yoko and Kawamoto, Yoshi and Rakotoarisoa, Gilbert and Randrianjafy, Albert and Koyama, Naoki and Hirai, Hirohisa},
title = {{Mhc-DRB genes evolution in lemurs.}},
journal = {Immunogenetics},
year = {2002},
volume = {54},
number = {6},
pages = {403--417},
month = sep
}
@article{Asmann:2008us,
author = {Asmann, Y and Wallace, M and Thompson, E},
title = {{Transcriptome Profiling Using Next-Generation Sequencing}},
journal = {Gastroenterology},
year = {2008}
}
@article{Millar:2000wb,
author = {Millar, CD and Taylor, GA and Moore, PJ and Halverson, JL and Lambert, DM},
title = {{A novel restriction fragment length polymorphism for petrels or tube-nosed seabirds}},
journal = {Molecular Ecology},
year = {2000},
volume = {9},
number = {11},
pages = {1915--1917}
}
@article{jaltman:2011wi,
author = {{jaltman} and Bradnam, Keith R and Fass, Joseph N and Alexandrov, Anton and Baranay, Paul and Bechner, Michael and Birol, Inan and Boisvert, S bastien and Chapman, Jarrod A and Chapuis, Guillaume and Chikhi, Rayan and Chitsaz, Hamidreza and Chou, Wen-Chi and Corbeil, Jacques and Del Fabbro, Cristian and Docking, T Roderick and Durbin, Richard and Earl, Dent and Emrich, Scott and Fedotov, Pavel and Fonseca, Nuno A and Ganapathy, Ganeshkumar and Gibbs, Richard A and Gnerre, Sante and Godzaridis, l nie and Goldstein, Steve and Haimel, Matthias and Hall, Giles and Haussler, David and Hiatt, Joseph B and Ho, Isaac Y and Howard, Jason and Hunt, Martin and Jackman, Shaun D and Jaffe, David B and Jarvis, Erich D and Jiang, Huaiyang and Kazakov, Sergey and Kersey, Paul J and Kitzman, Jacob O and Knight, James R and Koren, Sergey and Lam, Tak-Wah and Lavenier, Dominique and Laviolette, Fran ois and Li, Yingrui and Li, Zhenyu and Liu, Binghang and Liu, Yue and Luo, Ruibang and Maccallum, Iain and \textbf{MacManes}, Matthew D and Maillet, Nicolas and Melnikov, Sergey and Naquin, Delphine and Ning, Zemin and Otto, Thomas D and Paten, Benedict and Paulo, Oct vio S and Phillippy, Adam M and Pina-Martins, Francisco and Place, Michael and Przybylski, Dariusz and Qin, Xiang and Qu, Carson and Ribeiro, Filipe J and Richards, Stephen and Rokhsar, Daniel S and Ruby, J Graham and Scalabrin, Simone and Schatz, Michael C and Schwartz, David C and Sergushichev, Alexey and Sharpe, Ted and Shaw, Timothy I and Shendure, Jay and Shi, Yujian and Simpson, Jared T and Song, Henry and Tsarev, Fedor and Vezzi, Francesco and Vicedomini, Riccardo and Vieira, Bruno M and Wang, Jun and Worley, Kim C and Yin, Shuangye and Yiu, Siu-Ming and Yuan, Jianying and Zhang, Guojie and Zhang, Hao and Zhou, Shiguo and Korf, Ian F},
title = {{TruSeq DNA}},
year = {2011},
pages = {1--118},
month = jul
}
@article{Nielsen:1996iw,
author = {Nielsen, S{\o}ren and Marples, David and Fr{\o}kl{\ae}r, J{\o}rgen and Knepper, Mark and Agre, Peter},
title = {{The aquaporin family of water channels in kidney: An update on physiology and pathophysiology of aquaporin-2}},
journal = {Kidney international},
year = {1996},
volume = {49},
number = {6},
pages = {1718--1723},
month = jun
}
@article{Parra:2007df,
author = {Parra, Genis and Bradnam, Keith and Korf, Ian},
title = {{CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes.}},
journal = {Bioinformatics (Oxford, England)},
year = {2007},
volume = {23},
number = {9},
pages = {1061--1067},
month = may
}
@article{Bourne:2009js,
author = {Bourne, Philip E},
title = {{The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {7},
pages = {e1000431},
month = jul
}
@article{Taub:2010jb,
author = {Taub, Margaret A and Corrada Bravo, Hector and Irizarry, Rafael A},
title = {{Overcoming bias and systematic errors in next generation sequencing data.}},
journal = {Genome medicine},
year = {2010},
volume = {2},
number = {12},
pages = {87}
}
@article{Douglas:2006ec,
author = {Douglas, Michael E and Douglas, Marlis R and Schuett, Gordon W and Porras, Louis W},
title = {{Evolution of rattlesnakes (Viperidae; Crotalus) in the warm deserts of western North America shaped by Neogene vicariance and Quaternary climate change}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {11},
pages = {3353--3374},
month = aug
}
@article{Meng:2012gq,
author = {Meng, Fanxue and Meng, Fanxue and Hackenberg, Michael and Hackenberg, Michael and Li, Zhiguang and Li, Zhiguang and Yan, Jian and Yan, Jian and Chen, Tao and Chen, Tao},
title = {{Discovery of Novel MicroRNAs in Rat Kidney Using Next Generation Sequencing and Microarray Validation}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {3},
pages = {e34394},
month = mar
}
@article{Bertorelle:2010jd,
author = {Bertorelle, G and Benazzo, A and Mona, S},
title = {{ABC as a flexible framework to estimate demography over space and time: some cons, many pros}},
journal = {Molecular Ecology},
year = {2010},
volume = {19},
number = {13},
pages = {2609--2625},
month = jun
}
@article{Schad:2004wu,
author = {Schad, J and Sommer, S and Ganzhorn, JU},
title = {{MHC variability of a small lemur in the littoral forest fragments of southeastern Madagascar}},
journal = {Conservation Genetics},
year = {2004},
volume = {5},
number = {3},
pages = {299--309}
}
@article{Biesecker:2009bm,
author = {Biesecker, L G and Mullikin, J C and Facio, F M and Turner, C and Cherukuri, P F and Blakesley, R W and Bouffard, G G and Chines, P S and Cruz, P and Hansen, N F and Teer, J K and Maskeri, B and Young, A C and {NISC Comparative Sequencing Program} and Manolio, T A and Wilson, A F and Finkel, T and Hwang, P and Arai, A and Remaley, A T and Sachdev, V and Shamburek, R and Cannon, R O and Green, E D},
title = {{The ClinSeq Project: Piloting large-scale genome sequencing for research in genomic medicine}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {9},
pages = {1665--1674},
month = sep
}
@article{Firman:2008gq,
author = {Firman, Renee C and Simmons, Leigh W},
title = {{POLYANDRY FACILITATES POSTCOPULATORY INBREEDING AVOIDANCE IN HOUSE MICE}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {3},
pages = {603--611},
month = mar
}
@article{Janzen:2009he,
author = {Janzen, F J and Warner, D A},
title = {{Parent-offspring conflict and selection on egg size in turtles}},
journal = {Journal of Evolutionary Biology},
year = {2009},
volume = {22},
number = {11},
pages = {2222--2230},
month = nov
}
@article{Schradin:2008kq,
author = {Schradin, Carsten},
title = {{Seasonal changes in testosterone and corticosterone levels in four social classes of a desert dwelling sociable rodent}},
journal = {Hormones and Behavior},
year = {2008},
volume = {53},
number = {4},
pages = {573--579},
month = apr
}
@article{Dewsbury:1972tv,
author = {Dewsbury, DA},
title = {{PATTERNS OF COPULATORY BEHAVIOR IN MALE MAMMALS}},
journal = {Quarterly Review of Biology},
year = {1972},
volume = {47},
number = {1},
pages = {1--{\&}}
}
@article{Anonymous:S8iVzi_C,
title = {{Methylation of genomes and genes at the invertebrate-vertebrate boundary.}},
year = {1997},
pages = {1--8},
month = feb
}
@article{Malo:2005er,
author = {Malo, A F and Roldan, E R S and Garde, J and Soler, A J and GOMENDIO, M},
title = {{Antlers honestly advertise sperm production and quality}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2005},
volume = {272},
number = {1559},
pages = {149--157},
month = jan
}
@article{Hicks:2008uu,
author = {Hicks, Glenn},
title = {{comparison_table_v1.xls}},
year = {2008},
pages = {1--2},
month = jan
}
@article{EWALD:1982vv,
author = {EWALD, PW and ROHWER, S},
title = {{EFFECTS OF SUPPLEMENTAL FEEDING ON TIMING OF BREEDING, CLUTCH-SIZE AND POLYGYNY IN RED-WINGED BLACKBIRDS AGELAIUS-PHOENICEUS}},
journal = {Journal of Animal Ecology},
year = {1982},
volume = {51},
number = {2},
pages = {429--450}
}
@article{Lacoste:2006kz,
author = {Lacoste, M},
title = {{Renal Tubular Dysgenesis, a Not Uncommon Autosomal Recessive Disorder Leading to Oligohydramnios: Role of the Renin-Angiotensin System}},
journal = {Journal of the American Society of Nephrology},
year = {2006},
volume = {17},
number = {8},
pages = {2253--2263},
month = aug
}
@article{Tallamy:2003ik,
author = {Tallamy, D W and Darlington, M B and Pesek, J D and Powell, B E},
title = {{Copulatory courtship signals male genetic quality in cucumber beetles}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2003},
volume = {270},
number = {1510},
pages = {77--82},
month = jan
}
@article{Ellegren:2008hf,
author = {Ellegren, Hans and Sheldon, Ben C},
title = {{Genetic basis of fitness differences in natural populations}},
journal = {Nature},
year = {2008},
volume = {452},
number = {7184},
pages = {169--175},
month = mar
}
@article{Chapman:2008ht,
author = {Chapman, Tracey},
title = {{The Soup in My Fly: Evolution, Form and Function of Seminal Fluid Proteins}},
journal = {PLOS Biology},
year = {2008},
volume = {6},
number = {7},
pages = {e179}
}
@article{Dowling:2008ja,
author = {DOWLING, D and FRIBERG, U and LINDELL, J},
title = {{Evolutionary implications of non-neutral mitochondrial genetic variation}},
journal = {Trends In Ecology {\&} Evolution},
year = {2008},
volume = {23},
number = {10},
pages = {546--554},
month = oct
}
@article{Waples:2008ev,
author = {Waples, Robin S and Do, Chi},
title = {{ldne: a program for estimating effective population size from data on linkage disequilibrium}},
journal = {Molecular Ecology Resources},
year = {2008},
volume = {8},
number = {4},
pages = {753--756},
month = jul
}
@article{Helyar:2012im,
author = {Helyar, Sarah J and Limborg, Morten T and Bekkevold, Dorte and Bekkevold, Dorte and Babbucci, Massimiliano and van Houdt, Jeroen and Maes, Gregory E and Maes, Gregory E and Bargelloni, Luca and Nielsen, Rasmus O and Taylor, Martin I and Ogden, Rob and Cariani, Alessia and Carvalho, Gary R and Consortium, Fishpoptrace and Panitz, Frank and Panitz, Frank},
title = {{SNP discovery using Next Generation Transcriptomic Sequencing in Atlantic herring (\textit{Clupea harengus}).}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {8},
pages = {e42089}
}
@article{Tong:2013he,
author = {Tong, Chaobo and Wang, Xiaowu and Yu, Jingyin and Wu, Jian and Li, Wanshun and Huang, Junyan and Dong, Caihua and Hua, Wei and Liu, Shengyi},
title = {{Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {689}
}
@article{Jackson:2009wm,
author = {Jackson},
title = {{Immunomodulatory parasites and toll-like receptor-mediated tumour necrosis factor
alpha responsiveness in wild mammals
}},
year = {2009},
pages = {1--34},
month = apr
}
@article{Yuan:2010gr,
author = {Yuan, Furong and Yuan, Furong and Bernard, Gary D. and Bernard, Gary D. and Le, Jennifer and Le, Jennifer and Briscoe, Adriana D. and Briscoe, Adriana D.},
title = {{Contrasting Modes of Evolution of the Visual Pigments in Heliconius Butterflies}},
journal = {Molecular Biology and Evolution},
year = {2010},
volume = {27},
number = {10},
pages = {2392--2405}
}
@article{Saha:2002km,
author = {Saha, Saurabh and Sparks, andrew B and Rago, Carlo and Akmaev, Viatcheslav and Wang, Clarence J and Vogelstein, Bert and Kinzler, Kenneth W and Velculescu, Victor E},
title = {{Using the transcriptome to annotate the genome}},
journal = {Nature Biotechnology},
year = {2002},
volume = {20},
number = {5},
pages = {508--512},
month = may
}
@article{Carroll:2001uh,
author = {Carroll, C and Noss, RF and Paquet, PC},
title = {{Carnivores as focal species for conservation planning in the Rocky Mountain region}},
journal = {Ecological Applications},
year = {2001},
volume = {11},
number = {4},
pages = {961--980}
}
@article{Baena:2012hg,
author = {Baena, Martha Luc{\'\i}a and Mac{\'\i}as-Ord{\'o}{\~n}ez, Rogelio},
title = {{Phenology of Scramble Polygyny in a Wild Population of Chrysolemid Beetles: The Opportunity for and the Strength of Sexual Selection}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {6},
pages = {e38315},
month = jun
}
@article{Davies:1984tp,
author = {Davies, NB and LUNDBERG, A and LUNDBERG, A},
title = {{FOOD DISTRIBUTION AND A VARIABLE MATING SYSTEM IN THE DUNNOCK, PRUNELLA-MODULARIS}},
journal = {Journal of Animal Ecology},
year = {1984},
volume = {53},
number = {3},
pages = {895--912}
}
@article{Kim:2007bu,
author = {Kim, Ho Min and Kim, Ho Min and Park, Beom Seok and Park, Beom Seok and Kim, Jung-In and Kim, Jung-In and Kim, Sung Eun and Kim, Sung Eun and Lee, Judong and Lee, Judong and Oh, Se Cheol and Oh, Se Cheol and Enkhbayar, Purevjav and Enkhbayar, Purevjav and Matsushima, Norio and Matsushima, Norio and Lee, Hayyoung and Lee, Hayyoung and Yoo, Ook Joon and Yoo, Ook Joon and Lee, Jie-Oh and Lee, Jie-Oh},
title = {{Crystal structure of the TLR4-MD-2 complex with bound endotoxin antagonist eritoran}},
journal = {Cell},
year = {2007},
volume = {130},
number = {5},
pages = {906--917},
annote = {What is TV8, VT3
VLR?
}
}
@article{Mabry:2008gk,
author = {Nettle, Daniel and Pollet, Thomas V},
title = {{Natural selection on male wealth in humans.}},
journal = {The American Naturalist},
year = {2008},
volume = {172},
number = {5},
pages = {658--666},
month = nov
}
@article{Miller:2012cx,
author = {Miller, Webb and Miller, Webb and Schuster, Stephan C and Schuster, Stephan C and Welch, andreanna J and Welch, andreanna J and Ratan, Aakrosh and Ratan, Aakrosh and Bedoya-Reina, Oscar C and Bedoya-Reina, Oscar C and Zhao, Fangqing and Zhao, Fangqing and Kim, Hie Lim and Kim, Hie Lim and Burhans, Richard C and Burhans, Richard C and Drautz, Daniela I and Drautz, Daniela I and Wittekindt, Nicola E and Wittekindt, Nicola E and Tomsho, Lynn P and Tomsho, Lynn P and Ibarra-Laclette, Enrique and Ibarra-Laclette, Enrique and Herrera-Estrella, Luis and Herrera-Estrella, Luis and Peacock, Elizabeth and Peacock, Elizabeth and Farley, Sean and Farley, Sean and Sage, George K and Sage, George K and Rode, Karyn and Rode, Karyn and Obbard, Martyn and Obbard, Martyn and Montiel, Rafael and Montiel, Rafael and Bachmann, Lutz and Bachmann, Lutz and Ing{\'o}lfsson, Olafur and Ing{\'o}lfsson, Olafur and Aars, Jon and Aars, Jon and Mailund, Thomas and Mailund, Thomas and Wiig, Oystein and Wiig, Oystein and Talbot, Sandra L and Talbot, Sandra L and Lindqvist, Charlotte and Lindqvist, Charlotte},
title = {{Polar and brown bear genomes reveal ancient admixture and demographic footprints of past climate change.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
month = jul
}
@article{HUNT:2011gj,
author = {HUNT, J H},
title = {{A conceptual model for the origin of worker behaviour and adaptation of eusociality.}},
journal = {Journal of Evolutionary Biology},
year = {2011},
month = nov
}
@article{Helle:2008gn,
author = {Helle, S},
title = {{Why twin pregnancies are more successful at advanced than young maternal age? A potential role of 'terminal reproductive investment'}},
journal = {Human Reproduction},
year = {2008},
volume = {23},
number = {10},
pages = {2387--2389},
month = jul
}
@article{Lemos:2010fo,
author = {Lemos, B and Branco, A T and Hartl, D L},
title = {{Epigenetic effects of polymorphic Y chromosomes modulate chromatin components, immune response, and sexual conflict}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {36},
pages = {15826--15831},
month = sep
}
@article{Deluca:2009bw,
author = {DeLuca, D S and Beisswanger, E and Wermter, J and Horn, P A and Hahn, U and Blasczyk, R},
title = {{MaHCO: an ontology of the major histocompatibility complex for immunoinformatic applications and text mining}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {16},
pages = {2064--2070},
month = aug
}
@article{Arner:2009dl,
author = {Arner, E and Hayashizaki, Y and Daub, C O},
title = {{NGSView: an extensible open source editor for next-generation sequencing data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {26},
number = {1},
pages = {125--126},
month = dec
}
@article{MunozMerida:2013dw,
author = {Mu{\~n}oz-M{\'e}rida, Antonio and Gonz{\'a}lez-Plaza, Juan Jos{\'e} and Ca{\~n}ada, andr{\'e}s and Blanco, Ana Mar{\'\i}a and Garc{\'\i}a-L{\'o}pez, Maria del Carmen and Rodr{\'\i}guez, Jos{\'e} Manuel and Pedrola, Laia and Sicardo, M Dolores and Hern{\'a}ndez, M Luisa and De la Rosa, Ra{\'u}l and Belaj, Angjelina and Gil-Borja, Mayte and Luque, Francisco and Mart{\'\i}nez-Rivas, Jos{\'e} Manuel and Pisano, David G and Trelles, Oswaldo and Valpuesta, Victoriano and Beuz{\'o}n, Carmen R},
title = {{\textit{De novo} assembly and functional annotation of the olive (\textit{Olea europaea}) transcriptome.}},
journal = {DNA Research},
year = {2013},
volume = {20},
number = {1},
pages = {93--108},
month = feb
}
@article{Casavant:1996wx,
author = {Casavant, NC and Sherman, AN and Wichman, HA},
title = {{Two persistent LINE-1 lineages in \textit{Peromyscus} have unequal rates of evolution}},
journal = {Genetics},
year = {1996},
volume = {142},
number = {4},
pages = {1289--1298}
}
@article{AngillettaJr:2009bm,
author = {Angilletta Jr., Michael J and Huey, Raymond B and Frazier, Melanie R},
title = {{Thermodynamic Effects on Organismal Performance: Is Hotter Better?}},
journal = {Physiological and Biochemical Zoology},
year = {2009},
pages = {091209081441074--000},
month = dec
}
@article{Luo:2005ky,
author = {Luo, J and Sanetra, M and Schartl, M and Meyer, A},
title = {{Strong Reproductive Skew Among Males in the Multiply Mated Swordtail Xiphophorus multilineatus (Teleostei)}},
journal = {Journal of Heredity},
year = {2005},
volume = {96},
number = {4},
pages = {346--355},
month = jul
}
@article{ErbDownward:2011gz,
author = {Erb-Downward, John R and Thompson, Deborah L and Han, Meilan K and Freeman, Christine M and McCloskey, Lisa and Schmidt, Lindsay A and Young, Vincent B and Toews, Galen B and Curtis, Jeffrey L and Sundaram, Baskaran and Martinez, Fernando J and Huffnagle, Gary B},
title = {{Analysis of the Lung Microbiome in the {\textquotedblleft}Healthy{\textquotedblright} Smoker and in COPD}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {2},
pages = {e16384},
month = feb
}
@article{Birkhead:1995wx,
author = {Birkhead, TR and FLETCHER, F and PELLATT, EJ and STAPLES, A},
title = {{EJACULATE QUALITY AND THE SUCCESS OF EXTRA-PAIR COPULATIONS IN THE ZEBRA FINCH}},
journal = {Nature},
year = {1995},
volume = {377},
number = {6548},
pages = {422--423}
}
@article{Goncalves:2011vm,
author = {Gon{\c c}alves, B. and Gon{\c c}alves, B. and Perra, N. and Perra, N. and Vespignani, A. and Vespignani, A.},
title = {{Modeling Users' Activity on Twitter Networks: Validation of Dunbar's Number}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {8},
pages = {e22656}
}
@article{Rogers:2012ix,
author = {Rogers, A R},
title = {{Genetic relatedness to sisters' children has been underestimated}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1751},
pages = {20121937--20121937},
month = nov
}
@article{Smith:2009ch,
author = {Smith, Carl and Pateman-Jones, Christopher and Zi{\k{e}}ba, Grzegorz and Przybylski, Miros{\l}aw and Reichard, Martin},
title = {{Sperm depletion as a consequence of increased sperm competition risk in the European bitterling, Rhodeus amarus}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {5},
pages = {1227--1233},
month = may,
annote = {Sperm limitation!!}
}
@article{McGraw:2008kj,
author = {McGraw, Lisa A and Clark, andrew G and Wolfner, Mariana F},
title = {{Post-mating gene expression profiles of female \emph{\textit{Drosophila} \textit{melanogaster}} in response to time and to four male accessory gland proteins}},
journal = {Genetics},
year = {2008},
volume = {179},
number = {3},
pages = {1395--1408}
}
@article{Pergams:2009fn,
author = {Pergams, Oliver R W and Lawler, Joshua J and Svensson, Erik I},
title = {{Recent and Widespread Rapid Morphological Change in Rodents}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6452},
month = jul
}
@article{Huang:2008em,
author = {Huang, W and Marth, G},
title = {{EagleView: A genome assembly viewer for next-generation sequencing technologies}},
journal = {Genome Research},
year = {2008},
volume = {18},
number = {9},
pages = {1538--1543},
month = jul
}
@article{Dalerum:2007dh,
journal = {Journal of Zoology},
year = {2007},
volume = {273},
number = {1},
month = sep
}
@article{Calver:2002ei,
author = {Calver, A R and Davies, C H and Pangalos, M N},
title = {{GABA$_{B}$ Receptors: From Monogamy to Promiscuity}},
journal = {Neurosignals},
year = {2002},
volume = {11},
number = {6},
pages = {299--314}
}
@article{Cai:2013ji,
author = {Cai, Qingle and Cai, Qingle and Qian, Xiaoju and Qian, Xiaoju and Lang, Yongshan and Lang, Yongshan and Luo, Yadan and Luo, Yadan and Pan, Shengkai and Pan, Shengkai and Hui, Yuanyuan and Hui, Yuanyuan and Gou, Caiyun and Gou, Caiyun and Cai, Yue and Cai, Yue and Hao, Meirong and Hao, Meirong and Zhao, Jinyang and Zhao, Jinyang and Wang, Songbo and Wang, Songbo and Wang, Zhaobao and Wang, Zhaobao and Zhang, Xinming and Zhang, Xinming and Liu, Jinchao and Liu, Jinchao and Luo, Longhai and Luo, Longhai and Li, Yingrui and Wang, Jun and He, Rongjun and He, Rongjun and Lei, Fumin and Lei, Fumin and Xu, Jiaohui and Xu, Jiaohui},
title = {{The genome sequence of the ground tit Pseudopodoces humilis provides insights into its adaptation to high altitude}},
journal = {Genome Biology},
year = {2013},
volume = {14},
number = {3},
pages = {R29}
}
@article{Lukas:2004dv,
author = {Lukas, D and BRADLEY, B J and NSUBUGA, A M and Doran-Sheehy, D and ROBBINS, M M and Vigilant, L},
title = {{Major histocompatibility complex and microsatellite variation in two populations of wild gorillas}},
journal = {Molecular Ecology},
year = {2004},
volume = {13},
number = {11},
pages = {3389--3402},
month = oct
}
@article{Simmons:1996vm,
author = {Simmons, LW and Stockley, P and Jackson, RL and Parker, GA},
title = {{Sperm competition or sperm selection: No evidence for female influence over paternity in yellow dung flies Scatophaga stercoraria}},
journal = {Behavioral Ecology and Sociobiology},
year = {1996},
volume = {38},
number = {3},
pages = {199--206}
}
@article{Ahmad:2003bz,
author = {Ahmad, T and Neville, M and Marshall, S E and Armuzzi, A and Mulcahy-Hawes, K and Crawshaw, J and Sato, H and Ling, K L and Barnardo, M and Goldthorpe, S and Walton, R and Bunce, M and Jewell, D P and Welsh, K I},
title = {{Haplotype-specific linkage disequilibrium patterns define the genetic topography of the human MHC}},
journal = {Human Molecular Genetics},
year = {2003},
volume = {12},
number = {6},
pages = {647--656},
month = mar
}
@article{Anonymous:2013fz,
author = {Yamaguchi, Yoshiaki and Suzuki, Toru and Mizoro, Yasutaka and Kori, Hiroshi and Okada, Kazuki and Chen, Yulin and Fustin, Jean-Michel and Yamazaki, Fumiyoshi and Mizuguchi, Naoki and Zhang, Jing and Dong, Xin and Tsujimoto, Gozoh and Okuno, Yasushi and Doi, Masao and Okamura, Hitoshi},
title = {{Mice Genetically Deficient in Vasopressin V1a and V1b Receptors Are Resistant to Jet Lag}},
journal = {Science},
year = {2013},
volume = {342},
number = {6154},
pages = {85--90},
month = oct
}
@article{Hedrick:2002uw,
author = {Hedrick, PW and Lee, RN and Lee, RN and Garrigan, D},
title = {{Major histocompatibility complex variation in red wolves: evidence for common ancestry with coyotes and balancing selection}},
journal = {Molecular Ecology},
year = {2002},
volume = {11},
number = {10},
pages = {1905--1913}
}
@article{Stefansson:2009dn,
author = {Stefansson, Hreinn and Ophoff, Roel A and Steinberg, Stacy and andreassen, Ole A and Cichon, Sven and Rujescu, Dan and Werge, Thomas and Pietil{\"a}inen, Olli P H and Mors, Ole and Mortensen, Preben B and Sigurdsson, Engilbert and Gustafsson, Omar and Nyegaard, Mette and Tuulio-Henriksson, Annamari and Ingason, andres and Hansen, Thomas and Suvisaari, Jaana and Lonnqvist, Jouko and Paunio, Tiina and B{\o}rglum, anders D and Hartmann, Annette and Fink-Jensen, anders and Nordentoft, Merete and Hougaard, David and Norgaard-Pedersen, Bent and B{\"o}ttcher, Yvonne and Olesen, Jes and Breuer, Ren{\'e} and M{\"o}ller, Hans-J{\"u}rgen and Giegling, Ina and Rasmussen, Henrik B and Timm, Sally and Mattheisen, Manuel and Bitter, Istv{\'a}n and R{\'e}thelyi, J{\'a}nos M and Magnusdottir, Brynja B and Sigmundsson, Thordur and Olason, Pall and Masson, Gisli and Gulcher, Jeffrey R and Haraldsson, Magnus and Fossdal, Ragnheidur and Thorgeirsson, Thorgeir E and Thorsteinsdottir, Unnur and Ruggeri, Mirella and Tosato, Sarah and Franke, Barbara and Strengman, Eric and Kiemeney, Lambertus A and GROUP and Melle, Ingrid and Djurovic, Srdjan and Abramova, Lilia and Kaleda, Vasily and Sanjuan, Julio and de Frutos, Rosa and Bramon, Elvira and Vassos, Evangelos and Fraser, Gillian and Ettinger, Ulrich and Picchioni, Marco and Walker, Nicholas and Toulopoulou, Timi and Need, Anna C and Ge, Dongliang and Lim Yoon, Joeng and Shianna, Kevin V and Freimer, Nelson B and Cantor, Rita M and Murray, Robin and Kong, Augustine and Golimbet, Vera and Carracedo, Angel and Arango, Celso and Costas, Javier and J{\"o}nsson, Erik G and Terenius, Lars and Agartz, Ingrid and Petursson, Hannes and N{\"o}then, Markus M and Rietschel, Marcella and Matthews, Paul M and Muglia, Pierandrea and Peltonen, Leena and St Clair, David and Goldstein, David B and Stefansson, Kari and Collier, David A and Kahn, Ren{\'e} S and Linszen, Don H and van Os, Jim and Wiersma, Durk and Bruggeman, Richard and Cahn, Wiepke and de Haan, Lieuwe and Krabbendam, Lydia and Myin-Germeys, Inez},
title = {{Common variants conferring risk of schizophrenia}},
journal = {Nature},
year = {2009},
month = jul
}
@article{Li:2010jr,
author = {Li, Ruiqiang and Fan, Wei and Tian, Geng and Tian, Geng and Zhu, Hongmei and He, Lin and He, Lin and Cai, Jing and Cai, Jing and Huang, Quanfei and Huang, Quanfei and Cai, Qingle and Li, Bo and Bai, Yinqi and Bai, Yinqi and Zhang, Zhihe and Zhang, Yaping and Zhang, Yaping and Wang, Wen and Li, Jun and Wei, Fuwen and Wei, Fuwen and Li, Heng and Jian, Min and Jian, Min and Li, Jianwen and Li, Jianwen and Zhang, Zhaolei and Zhang, Zhaolei and Nielsen, Rasmus and Li, Dawei and Li, Dawei and Gu, Wanjun and Yang, Zhentao and Yang, Zhentao and Xuan, Zhaoling and Xuan, Zhaoling and Ryder, Oliver A and Leung, Frederick Chi-Ching and Leung, Frederick Chi-Ching and Zhou, Yan and Cao, Jianjun and Cao, Jianjun and Sun, Xiao and Sun, Xiao and Fu, Yonggui and Fu, Yonggui and Fang, Xiaodong and Guo, Xiaosen and Wang, Bo and Hou, Rong and Hou, Rong and Shen, Fujun and Mu, Bo and Mu, Bo and Ni, Peixiang and Lin, Runmao and Lin, Runmao and Qian, Wubin and Wang, Guodong and Wang, Guodong and Yu, Chang and Nie, Wenhui and Nie, Wenhui and Wang, Jinhuan and Wang, Jinhuan and Wu, Zhigang and Wu, Zhigang and Liang, Huiqing and Liang, Huiqing and Min, Jiumeng and Min, Jiumeng and Wu, Qi and Wu, Qi and Cheng, Shifeng and Cheng, Shifeng and Ruan, Jue and Wang, Mingwei and Wang, Mingwei and Shi, Zhongbin and Wen, Ming and Wen, Ming and Liu, Binghang and Ren, Xiaoli and Ren, Xiaoli and Zheng, Huisong and Zheng, Huisong and Dong, Dong and Dong, Dong and Cook, Kathleen and Cook, Kathleen and Shan, Gao and Zhang, Hao and Kosiol, Carolin and Xie, Xueying and Xie, Xueying and Lu, Zuhong and Lu, Zuhong and Zheng, Hancheng and Zheng, Hancheng and Li, Yingrui and Steiner, Cynthia C and Lam, Tommy Tsan-Yuk and Lam, Tommy Tsan-Yuk and Lin, Siyuan and Lin, Siyuan and Zhang, Qinghui and Zhang, Qinghui and Li, Guoqing and Tian, Jing and Tian, Jing and Gong, Timing and Gong, Timing and Liu, Hongde and Liu, Hongde and Zhang, Dejin and Zhang, Dejin and Fang, Lin and Fang, Lin and Ye, Chen and Ye, Chen and Zhang, Juanbin and Zhang, Juanbin and Hu, Wenbo and Hu, Wenbo and Xu, Anlong and Ren, Yuanyuan and Ren, Yuanyuan and Zhang, Guojie and Bruford, Michael W and Bruford, Michael W and Li, Qibin and Ma, Lijia and Ma, Lijia and Guo, Yiran and An, Na and An, Na and Hu, Yujie and Hu, Yujie and Zheng, Yang and Zheng, Yang and Shi, Yongyong and Shi, Yongyong and Li, Zhiqiang and Li, Zhiqiang and Liu, Qing and Liu, Qing and Chen, Yanling and Chen, Yanling and Zhao, Jing and Qu, Ning and Qu, Ning and Zhao, Shancen and Zhao, Shancen and Tian, Feng and Tian, Feng and Wang, Xiaoling and Wang, Xiaoling and Wang, Haiyin and Wang, Haiyin and Xu, Lizhi and Xu, Lizhi and Liu, Xiao and Vinar, Tom{\'a}s and Wang, Yajun and Wang, Yajun and Lam, Tak-Wah and Yiu, Siu-Ming and Liu, Shiping and Liu, Shiping and Zhang, Hemin and Zhang, Hemin and Li, Desheng and Li, Desheng and Huang, Yan and Wang, Xia and Wang, Xia and Yang, Guohua and Yang, Guohua and Jiang, Zhi and Jiang, Zhi and Wang, Junyi and Qin, Nan and Qin, Nan and Li, Li and Li, Jingxiang and Li, Jingxiang and Bolund, Lars and Bolund, Lars and Kristiansen, Karsten and Wong, Gane Ka-Shu and Olson, Maynard and Olson, Maynard and Zhang, Xiuqing and Li, Songgang and Yang, Huanming and Wang, Jian and Wang, Jun},
title = {{The sequence and \textit{de novo} assembly of the giant panda genome.}},
journal = {Nature},
year = {2010},
volume = {463},
number = {7279},
pages = {311--317},
month = jan
}
@article{Dorak:2002gk,
author = {Dorak, M T and Lawson, T and Machulla, H K G and Mills, K I and Burnett, A K},
title = {{Increased heterozygosity for MHC class II lineages in newborn males}},
journal = {Genes and Immunity},
year = {2002},
volume = {3},
number = {5},
pages = {263--269},
month = jul
}
@article{Neto:2000ta,
author = {Neto, ED and Correa, RG and Correa, RG and Verjovski-Almeida, S and Verjovski-Almeida, S and Briones, MRS and Briones, MRS and Nagai, MA and Nagai, MA and Da Silva, W and Da Silva, W and Zago, MA and Zago, MA and Bordin, S and Bordin, S and Costa, FF and Costa, FF and Goldman, GH and Goldman, GH and Carvalho, AF and Carvalho, AF and Matsukuma, A and Matsukuma, A and Baia, GS and Baia, GS and Simpson, DH and Simpson, DH and Brunstein, A and Brunstein, A and de Oliveira, PSL and de Oliveira, PSL and Bucher, P and Bucher, P and Jongeneel, CV and Jongeneel, CV and O'Hare, MJ and O'Hare, MJ and Soares, F and Soares, F and Brentani, RR and Brentani, RR and Reis, LFL and Reis, LFL and de Souza, SJ and de Souza, SJ and Simpson, AJG and Simpson, AJG},
title = {{Shotgun sequencing of the human transcriptome with ORF expressed sequence tags}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2000},
volume = {97},
number = {7},
pages = {3491--3496}
}
@article{Vanpe:2008js,
author = {Vanpe, C. and Kjellander, P. and Galan, M and Cosson, J F and Aulagnier, S and Liberg, O and Hewison, A. J. M.},
title = {{Mating system, sexual dimorphism, and the opportunity for sexual selection in a territorial ungulate}},
journal = {Behavioral Ecology},
year = {2007},
volume = {19},
number = {2},
pages = {309--316},
month = dec
}
@article{Gilad:2009km,
author = {Gilad, Yoav and Pritchard, Jonathan K and Thornton, Kevin},
title = {{Characterizing natural variation using next-generation sequencing technologies}},
journal = {Trends In Genetics},
year = {2009},
volume = {25},
number = {10},
pages = {463--471},
month = oct
}
@article{Schluter:vu,
author = {Schluter, D and Grant, P R},
title = {{Ecological Correlates of Morphological Evolution in a Darwins Finch, \textit{Geospiza difficilis}}},
journal = {Evolution},
year = {1984},
volume = {38},
number = {4},
pages = {856--869},
month = jul
}
@article{Teplitsky:2008ii,
author = {Teplitsky, C{\'e}line and Mills, James A and Yarrall, John W and Meril{\"a}, Juha},
title = {{HERITABILITY OF FITNESS COMPONENTS IN A WILD BIRD POPULATION}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {3},
pages = {716--726},
month = mar
}
@article{Anonymous:F87rObWK,
title = {{sdarticle (4)}},
year = {2002},
pages = {1--5},
month = aug
}
@article{Wlasiuk:2010tr,
author = {Wlasiuk, Gabriela},
title = {{Molecular Evolution of Innate Immunity Genes at Different Timescales: Adaptation and Constraint at Toll-Like Receptors in Primates}},
year = {2010},
pages = {1--51},
month = apr
}
@article{Ewing:1998gg,
author = {Ewing, B and Ewing, B and Green, P and Green, P},
title = {{Base-calling of automated sequencer traces using phred. II. Error probabilities}},
journal = {Genome Research},
year = {1998},
volume = {8},
number = {3},
pages = {186--194}
}
@article{:2012hw,
author = {Ujvari, Beata and Mun, Hee-chang and Conigrave, Arthur D and Bray, Alessandra and Osterkamp, Jens and Halling, Petter and Madsen, Thomas},
title = {{ISOLATION BREEDS NAIVETY: ISLAND LIVING ROBS AUSTRALIAN VARANID LIZARDS OF TOAD-TOXIN IMMUNITY VIA FOUR-BASE-PAIR MUTATION}},
journal = {Evolution},
year = {2012},
volume = {67},
number = {1},
pages = {289--294},
month = aug
}
@article{HARCOURT:1995wb,
author = {HARCOURT, AH and HARCOURT, AH and Purvis, A and Purvis, A and Liles, L and Liles, L},
title = {{Sperm competition: mating system, not breeding season, affects testes size of primates}},
journal = {Functional Ecology},
year = {1995},
pages = {468--476}
}
@article{Excoffier:2011el,
author = {Excoffier, Laurent and Foll, Matthieu},
title = {{fastsimcoal: a continuous-time coalescent simulator of genomic diversity under arbitrarily complex evolutionary scenarios.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {9},
pages = {1332--1334},
month = may
}
@article{Lin:2011bb,
author = {Lin, Dayu and Boyle, Maureen P and Dollar, Piotr and Lee, Hyosang and Lein, E S and Perona, Pietro and anderson, David J},
title = {{Functional identification of an aggression locus in the mouse hypothalamus}},
journal = {Nature},
year = {2011},
volume = {470},
number = {7333},
pages = {221--226},
month = feb
}
@article{Eisen:1999uw,
author = {Eisen, MB and Brown, PO},
title = {{DNA arrays for analysis of gene expression}},
journal = {Molecular Evolution: Producing The Biochemical Data, Part B},
year = {1999},
volume = {303},
pages = {179--205}
}
@article{Pujolar:2009do,
author = {Pujolar, J M and Bevacqua, D and Capoccioni, F and Ciccotti, E and de Leo, G A and Zane, L},
title = {{Genetic variability is unrelated to growth and parasite infestation in natural populations of the European eel ( Anguilla anguilla)}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {22},
pages = {4604--4616},
month = nov
}
@article{Harbers:2005jr,
author = {Harbers, Matthias and Carninci, Piero},
title = {{Tag-based approaches for transcriptome research and genome annotation}},
journal = {Nature Methods},
year = {2005},
volume = {2},
number = {7},
pages = {495--502},
month = jul
}
@article{Anonymous:pLGfku_C,
title = {{SolexaDataAnalysis_BioinfoFacility}},
year = {2008},
pages = {1--6},
month = nov
}
@article{Blankenberg:2011en,
author = {Blankenberg, Daniel and Blankenberg, Daniel and Taylor, James and Nekrutenko, Anton and {The Galaxy Team} and {The Galaxy Team}},
title = {{Making whole genome multiple alignments usable for biologists.}},
journal = {Bioinformatics (Oxford, England)},
year = {2011},
volume = {27},
number = {17},
pages = {2426--2428},
month = sep
}
@article{Nozawa:2009wb,
author = {Nozawa, M and Nozawa, M and Suzuki, Y and Suzuki, Y and NEI, M},
title = {{Reliabilities of identifying positive selection by the branch site and the site-prediction methods}},
journal = {PNAS},
year = {2009},
pages = {1--6},
month = mar
}
@article{Tan:2009hd,
author = {Tan, Min and Tan, Min and Jones, Gareth and Zhu, Guangjian and Zhu, Guangjian and Ye, Jianping and Ye, Jianping and Hong, Tiyu and Hong, Tiyu and Zhou, Shanyi and Zhou, Shanyi and Zhang, Shuyi and Zhang, Libiao and Zhang, Libiao},
title = {{Fellatio by fruit bats prolongs copulation time.}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7595}
}
@article{Wilson:1997up,
author = {Wilson, N and Tubman, SC and Eady, PE and Robertson, GW and Robertson, GW},
title = {{Female genotype affects male success in sperm competition}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1997},
volume = {264},
number = {1387},
pages = {1491--1495}
}
@article{Vaiyapuri:2011km,
author = {Vaiyapuri, Sakthivel and Wagstaff, Simon C and Harrison, Robert A and Gibbins, Jonathan M and Gibbins, Jonathan M and Hutchinson, E Gail and Hutchinson, E Gail},
title = {{Evolutionary Analysis of Novel Serine Proteases in the Venom Gland Transcriptome of Bitis gabonica rhinoceros.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {6},
pages = {e21532}
}
@article{Parker:2014gb,
author = {Parker, Joe and TSAGKOGEORGA, GEORGIA and Cotton, James A and Liu, Yuan and Provero, Paolo and Stupka, Elia and Rossiter, Stephen J},
title = {{Genome-wide signatures of convergent evolution in echolocating mammals}},
journal = {Nature},
year = {2014},
volume = {502},
number = {7470},
pages = {228--231},
month = apr
}
@article{MacArthur:2009io,
author = {MacArthur, Stewart and Li, Xiao-Yong and Li, Jingyi and Brown, James B and Chu, Hou Cheng and Zeng, Lucy and Grondona, Brandi P and Hechmer, Aaron and Simirenko, Lisa and Ker{\"a}nen, Soile VE and Knowles, David W and Stapleton, Mark and Bickel, Peter and Biggin, Mark D and Eisen, Michael B},
title = {{Developmental roles of 21 \textit{Drosophila} transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {7},
pages = {R80}
}
@article{Hofreiter:2001uw,
author = {Hofreiter, M and Hofreiter, M and Jaenicke, V and Jaenicke, V and Serre, D and Serre, D and von Haeseler, A and von Haeseler, A and Paabo, S},
title = {{DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA}},
journal = {Nucleic Acids Research},
year = {2001},
volume = {29},
number = {23},
pages = {4793--4799}
}
@article{Smith:1984un,
author = {Smith, D G and Smith, D G and Small, M F and Small, M F and Ahlfors, C E and Ahlfors, C E and Lorey, F W and Lorey, F W and Stern, B R and Stern, B R and Rolfs, B K and Rolfs, B K},
title = {{Paternity Exclusion Analysis and Its Applications to Studies of Nonhuman-Primates}},
journal = {Advances in Veterinary Science and Comparative Medicine},
year = {1984},
volume = {28},
pages = {1--24}
}
@article{Yamaguchi:2013fz,
author = {Yamaguchi, Yoshiaki and Suzuki, Toru and Mizoro, Yasutaka and Kori, Hiroshi and Okada, Kazuki and Chen, Yulin and Fustin, Jean-Michel and Yamazaki, Fumiyoshi and Mizuguchi, Naoki and Zhang, Jing and Dong, Xin and Tsujimoto, Gozoh and Okuno, Yasushi and Doi, Masao and Okamura, Hitoshi},
title = {{Mice Genetically Deficient in Vasopressin V1a and V1b Receptors Are Resistant to Jet Lag}},
journal = {Science},
year = {2013},
volume = {342},
number = {6154},
pages = {85--90},
month = oct
}
@article{Rubenstein:2005im,
author = {Rubenstein, Dustin R},
title = {{Isolation and characterization of polymorphic microsatellite loci in the plural cooperatively breeding superb starling, Lamprotornis superbus}},
journal = {Molecular Ecology Notes},
year = {2005},
volume = {5},
number = {4},
pages = {739--744},
month = dec
}
@article{Suzan:2009cs,
author = {Suz{\'a}n, Gerardo and Marc{\'e}, Erika and Giermakowski, J Tomasz and Mills, James N and Ceballos, Gerardo and Ostfeld, R S and Armi{\'e}n, Blas and Pascale, Juan M and Yates, Terry L and Wilby, andrew},
title = {{Experimental Evidence for Reduced Rodent Diversity Causing Increased Hantavirus Prevalence}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {5},
pages = {e5461},
month = may
}
@article{Macedo:2004jx,
author = {Schwabl, Hubert and Macedo, Regina H F and Cariello, Mariana O and Graves, Jeff},
title = {{Reproductive partitioning in communally breeding guira cuckoos, Guira guira}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {55},
number = {3},
pages = {213--222},
month = jan
}
@article{Jones:2002dh,
author = {Jones, A G and Arguello, J R and Arnold, S J},
title = {{Validation of Bateman's principles: a genetic study of sexual selection and mating patterns in the rough-skinned newt}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2002},
volume = {269},
number = {1509},
pages = {2533--2539},
month = dec
}
@article{Gavrilets:2009jt,
author = {Gavrilets, S and Losos, J B},
title = {{Adaptive Radiation: Contrasting Theory with Data}},
journal = {Science (New York, NY)},
year = {2009},
volume = {323},
number = {5915},
pages = {732--737},
month = feb
}
@article{Smit:2008vl,
author = {Smit, H A and Robinson, T J and Watson, J and van Vuuren, B Jansen},
title = {{A NEW SPECIES OF ELEPHANT-SHREW (AFROTHERIA: MACROSCELIDEA: ELEPHANTULUS) FROM SOUTH AFRICA}},
journal = {Journal of Mammalogy},
year = {2008},
volume = {89},
number = {5},
pages = {1257--1269}
}
@article{Krokene:1996wn,
author = {Krokene, C and Anthonisen, K and Lifjeld, JT and Amundsen, T},
title = {{Paternity and paternity assurance behaviour in the bluethroat, Luscinia s svecica}},
journal = {Animal Behaviour},
year = {1996},
volume = {52},
pages = {405--417}
}
@article{Soneson:2013fr,
author = {Soneson, Charlotte and Soneson, Charlotte and Delorenzi, Mauro and Delorenzi, Mauro},
title = {{A comparison of methods for differential expression analysis of RNA-seq data}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {91}
}
@article{Dyrcz:2005vz,
author = {Dyrcz, A and Wink, M and Kruszewicz, A and Leisler, B},
title = {{Male reproductive success is correlated with blood parasite levels and body condition in the promiscuous aquatic warbler (Acrocephalus paludicola)}},
journal = {Auk},
year = {2005},
volume = {122},
number = {2},
pages = {558--565}
}
@article{Mishmar:2006cr,
author = {Mishmar, Dan and Ruiz-Pesini, Eduardo and Mondragon-Palomino, Mariana and Procaccio, Vincent and Gaut, Brandon and Wallace, Douglas C},
title = {{Adaptive selection of mitochondrial complex I subunits during primate radiation}},
journal = {Gene},
year = {2006},
volume = {378},
pages = {11--18},
month = aug
}
@article{Eizaguirre:2009bx,
author = {Eizaguirre, Christophe and Lenz, Tobias L and Traulsen, Arne and Milinski, Manfred},
title = {{Speciation accelerated and stabilized by pleiotropic major histocompatibility complex immunogenes}},
journal = {Ecology Letters},
year = {2009},
volume = {12},
number = {1},
pages = {5--12},
month = jan
}
@article{Chung:2013fu,
author = {Chung, Lisa M and Chung, Lisa M and Ferguson, John P and Ferguson, John P and Zheng, Wei and Zheng, Wei and Qian, Feng and Qian, Feng and Bruno, Vincent and Bruno, Vincent and Montgomery, Ruth R and Montgomery, Ruth R and Zhao, Hongyu and Zhao, Hongyu},
title = {{Differential expression analysis for paired RNA-seq data}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {110}
}
@article{McDonald:1991hj,
author = {McDonald, J H and Kreitman, M},
title = {{Adaptive protein evolution at the Adh locus in \textit{Drosophila}.}},
journal = {Nature},
year = {1991},
volume = {351},
number = {6328},
pages = {652--654},
month = jun
}
@article{Seidel:2006ca,
author = {Seidel, S D and Hung, S C and Lynn Kan, H and Bhaskar Gollapudi, B},
title = {{Background Gene Expression in Rat Kidney: Influence of Strain, Gender, and Diet}},
journal = {Toxicological Sciences},
year = {2006},
volume = {94},
number = {1},
pages = {226--233},
month = jun
}
@article{Bull:2000wb,
author = {Bull, CM},
title = {{Monogamy in lizards}},
journal = {Behavioural Processes},
year = {2000},
volume = {51},
number = {1-3},
pages = {7--20}
}
@article{PARKER:1974vc,
author = {Parker, GA},
title = {{REPRODUCTIVE BEHAVIOR AND NATURE OF SEXUAL SELECTION IN SCATOPHAGA-STERCORARIA L (DIPTERA-SCATOPHAGIDAE) .9. SPATIAL-DISTRIBUTION OF FERTILIZATION RATES AND EVOLUTION OF MALE SEARCH STRATEGY WITHIN REPRODUCTIVE AREA}},
journal = {Evolution},
year = {1974},
volume = {28},
number = {1},
pages = {93--108}
}
@article{Pell:2012id,
author = {Pell, Jason and Pell, Jason and Hintze, Arend and Hintze, Arend and Canino-Koning, Rosangela and Canino-Koning, Rosangela and Howe, Adina and Howe, Adina and Tiedje, James M and Tiedje, James M and Brown, C Titus},
title = {{Scaling metagenome sequence assembly with probabilistic \textit{de Bruijn} graphs.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {33},
pages = {13272--13277},
month = aug
}
@article{Mg:2009th,
author = {Mg225},
title = {{Microsoft Word - Hunt et al.Revised.doc}},
year = {2009},
pages = {1--17},
month = sep
}
@article{Orians:1969va,
author = {Orians, G H},
title = {{On evolution of mating systems in birds and mammals}},
journal = {The American Naturalist},
year = {1969},
volume = {103},
number = {934},
pages = {589--603}
}
@article{Massingham:2005bz,
author = {Massingham, T},
title = {{Detecting Amino Acid Sites Under Positive Selection and Purifying Selection}},
journal = {Genetics},
year = {2004},
volume = {169},
number = {3},
pages = {1753--1762},
month = nov
}
@article{Pfennig:2007hs,
author = {Pfennig, K S},
title = {{Facultative Mate Choice Drives Adaptive Hybridization}},
journal = {Science (New York, NY)},
year = {2007},
volume = {318},
number = {5852},
pages = {965--967},
month = nov
}
@article{Fraser:2010gq,
author = {Fraser, Bonnie A and Fraser, Bonnie A and Ramnarine, Indar W and Neff, Bryan D},
title = {{Temporal variation at the MHC class IIb in wild populations of the guppy (\emph{Poecilia reticulata}).}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {7},
pages = {2086--2096},
month = jul
}
@article{Wright:2002wf,
author = {Wright, SL and Brown, RE},
title = {{The importance of paternal care on pup survival and pup growth in \textit{Peromyscus} \textit{californicus} when required to work for food}},
journal = {Behavioural Processes},
year = {2002},
volume = {60},
number = {1},
pages = {41--52}
}
@article{Scharf:1988vc,
author = {Scharf, S and Long, C and Erlich, H},
title = {{Sequence analysis of the HLA-DR beta and HLA-DQ beta loci from three Pemphigus vulgaris {\ldots}}},
journal = {Human immunology},
year = {1988}
}
@article{Goetz:2003vi,
author = {Goetz, JE and McFarland, KP and Rimmer, CC},
title = {{Multiple paternity and multiple male feeders in Bicknell's Thrush (Catharus bicknelli)}},
journal = {Auk},
year = {2003},
volume = {120},
number = {4},
pages = {1044--1053}
}
@article{Ibanez:2009gq,
author = {Ibanez, A and Larranaga, P and Bielza, C},
title = {{Predicting citation count of Bioinformatics papers within four years of publication}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {24},
pages = {3303--3309},
month = dec
}
@article{Daxinger:2010bu,
author = {Daxinger, L and Whitelaw, E},
title = {{Transgenerational epigenetic inheritance: More questions than answers}},
journal = {Genome Research},
year = {2010},
volume = {20},
number = {12},
pages = {1623--1628},
month = dec
}
@article{Gobush:2009ci,
author = {Gobush, Kathleen S and Wasser, Samuel K},
title = {{Behavioural correlates of low relatedness in African elephant core groups of a poached population}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {5},
pages = {1079--1086},
month = nov
}
@article{Vaclav:2007ui,
author = {Vaclav, R and Hoi, H and Hoi, H},
title = {{Journal of Ornithology, Volume 148, Number 4 - SpringerLink}},
journal = {Journal of Ornithology},
year = {2007}
}
@article{ZambranoNava:2010fx,
author = {Zambrano-Nava, Sunny and Zambrano-Nava, Sunny and Bosc{\'a}n-Ocando, Julio and Bosc{\'a}n-Ocando, Julio and Nava, Jexenia and Nava, Jexenia},
title = {{Normal bacterial flora from vaginas of Criollo Limonero cows}},
journal = {Tropical Animal Health and Production},
year = {2010},
volume = {43},
number = {2},
pages = {291--294},
month = nov
}
@article{Ball:2003ks,
author = {Ball, M A and Parker, G A},
title = {{Sperm competition games: sperm selection by females}},
journal = {Journal of Theoretical Biology},
year = {2003},
volume = {224},
number = {1},
pages = {27--42},
month = sep
}
@article{Skelly:2011fd,
author = {Skelly, Daniel A. and Skelly, Daniel A. and Johansson, Marnie and Johansson, Marnie and Madeoy, Jennifer and Madeoy, Jennifer and Wakefield, Jon and Wakefield, Jon and Akey, Joshua M},
title = {{A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {10},
pages = {1728--1737}
}
@article{CluttonBrock:1992ut,
author = {Clutton-Brock, TH and Parker, GA},
title = {{Potential Reproductive Rates and the Operation of Sexual Selection}},
journal = {Quarterly Review of Biology},
year = {1992},
volume = {67},
number = {4},
pages = {437--456}
}
@article{Yang:2000wv,
author = {Yang, Ziheng and Nielsen, R and Goldman, N and Pedersen, AMK},
title = {{Codon-substitution models for heterogeneous selection pressure at amino acid sites}},
journal = {Genetics},
year = {2000},
volume = {155},
number = {1},
pages = {431--449}
}
@article{Magrath:2009em,
author = {Magrath, Michael J L and Vedder, Oscar and van der Velde, Marco and Komdeur, Jan},
title = {{Maternal Effects Contribute to the Superior Performance of Extra-Pair offspring}},
journal = {Current Biology},
year = {2009},
volume = {19},
number = {9},
pages = {792--797},
month = may
}
@article{Turque:2010do,
author = {Turque, Aline S and Turque, Aline S and Batista, Daniela and Batista, Daniela and Silveira, Cynthia B and Silveira, Cynthia B and Cardoso, Alexander M and Cardoso, Alexander M and Vieira, Ricardo P and Vieira, Ricardo P and Moraes, Fernando C and Moraes, Fernando C and Clementino, Maysa M and Clementino, Maysa M and Albano, Rodolpho M and Albano, Rodolpho M and Paranhos, Rodolfo and Paranhos, Rodolfo and Martins, Orlando B and Martins, Orlando B and Muricy, Guilherme and Muricy, Guilherme},
title = {{Environmental Shaping of Sponge Associated Archaeal Communities}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {12}
}
@article{Kekalainen:2009eo,
author = {Kekalainen, J and Vallunen, J A and Primmer, C R and Rattya, J and Taskinen, J},
title = {{Signals of major histocompatibility complex overdominance in a wild salmonid population}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1670},
pages = {3133--3140},
month = jul
}
@article{RamosPereira:2009jm,
author = {Ramos Pereira, M J and Salgueiro, P and Rodrigues, L and Coelho, M M and Palmeirim, J M},
title = {{Population Structure of a Cave-Dwelling Bat, Miniopterus schreibersii: Does It Reflect History and Social Organization?}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {5},
pages = {533--544},
month = aug
}
@article{HUGOPanAsianSNPConsortium:2009ih,
author = {{The HUGO Pan-Asian SNP Consortium} and Abdulla, M A and Ahmed, I and Assawamakin, A and Bhak, J and Brahmachari, S K and Calacal, G C and Chaurasia, A and Chen, C H and Chen, J and Chen, Y T and Chu, J and Cutiongco-de la Paz, E M C and De Ungria, M C A and Delfin, F C and Edo, J and Fuchareon, S and Ghang, H and Gojobori, T and Han, J and Ho, S F and Hoh, B P and Huang, W and Inoko, H and Jha, P and Jinam, T A and Jin, L and Jung, J and Kangwanpong, D and Kampuansai, J and Kennedy, G C and Khurana, P and Kim, H L and Kim, K and Kim, S and Kim, W Y and Kimm, K and Kimura, R and Koike, T and Kulawonganunchai, S and Kumar, V and Lai, P S and Lee, J Y and Lee, S and Liu, E T and Majumder, P P and Mandapati, K K and Marzuki, S and Mitchell, W and Mukerji, M and Naritomi, K and Ngamphiw, C and Niikawa, N and Nishida, N and Oh, B and Oh, S and Ohashi, J and Oka, A and Ong, R and Padilla, C D and Palittapongarnpim, P and Perdigon, H B and Phipps, M E and Png, E and Sakaki, Y and Salvador, J M and Sandraling, Y and Scaria, V and Seielstad, M and Sidek, M R and Sinha, A and Srikummool, M and Sudoyo, H and Sugano, S and Suryadi, H and Suzuki, Y and Tabbada, K A and Tan, A and Tokunaga, K and Tongsima, S and Villamor, L P and Wang, E and Wang, Y and Wang, H and Wu, J Y and Xiao, H and Xu, S and Yang, J O and Shugart, Y Y and Yoo, H S and Yuan, W and Zhao, G and Zilfalil, B A},
title = {{Mapping Human Genetic Diversity in Asia}},
journal = {Science (New York, NY)},
year = {2009},
volume = {326},
number = {5959},
pages = {1541--1545},
month = dec
}
@article{Anonymous:2012hk,
author = {RUNCIE, DANIEL E and Garfield, David A and BABBITT, COURTNEY C and WYGODA, JENNIFER A and MUKHERJEE, SAYAN and WRAY, GREGORY A},
title = {{Genetics of gene expression responses to temperature stress in a sea urchin gene network}},
journal = {Molecular Ecology},
year = {2012},
volume = {21},
number = {18},
pages = {4547--4562},
month = aug
}
@article{Groenenberg:2012hv,
author = {Groenenberg, Dick SJ and Pirovano, Walter and Gittenberger, Edmund and Schilthuizen, Menno},
title = {{The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina Next Generation Sequencing.}},
journal = {BMC Genomics},
year = {2012},
volume = {13},
number = {1},
pages = {114}
}
@article{petere:2007bq,
author = {{petere}},
title = {{Clustering of phosphorylation site recognition motifs can be exploited to predict the targets of cyclin-dependent kinase}},
year = {2007},
pages = {1--14},
month = mar
}
@article{Dibattista:2008dv,
author = {Dibattista, Joseph D and Feldheim, Kevin A and Thibert-Plante, Xavier and Gruber, Samuel H and Hendry, andrew P},
title = {{A genetic assessment of polyandry and breeding-site fidelity in lemon sharks}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {14},
pages = {3337--3351},
month = jul
}
@article{Dugdale:2010cv,
author = {Dugdale, Hannah L and Ellwood, Stephen A and Macdonald, David W},
title = {{Alloparental behaviour and long-term costs of mothers tolerating other members of the group in a plurally breeding mammal}},
journal = {Animal Behaviour},
year = {2010},
volume = {80},
number = {4},
pages = {721--735},
month = oct
}
@article{Bono:2011jp,
author = {Bono, Jeremy M and Bono, Jeremy M and Matzkin, Luciano M and Kelleher, Erin S and Kelleher, Erin S and Markow, Therese A and Markow, Therese A},
title = {{Postmating transcriptional changes in reproductive tracts of con- and heterospecifically mated \textit{Drosophila} mojavensis females.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2011},
volume = {108},
number = {19},
pages = {7878--7883},
month = may
}
@article{Cerda:2008hl,
author = {Cerda, Joan and Mercade, Jaume and Lozano, Juan Jose and Manchado, Manuel and Tingaud-Sequeira, Angele and Astola, Antonio and Infante, Carlos and Halm, Silke and Vinas, Jordi and Castellana, Barbara and Asensio, Esther and Canavate, Pedro and Martinez-Rodriguez, Gonzalo and Piferrer, Francesc and Planas, Josep V and Prat, Francesc and Yufera, Manuel and Durany, Olga and Subirada, Francesc and Rosell, Elisabet and Maes, Tamara},
title = {{Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the bioinformatic platform Soleamold}},
journal = {BMC Genomics},
year = {2008},
volume = {9},
number = {1},
pages = {508}
}
@article{Silk:2002uq,
author = {Silk, JB},
title = {{Kin selection in primate groups}},
journal = {International Journal of Primatology},
year = {2002},
volume = {23},
number = {4},
pages = {849--875}
}
@article{Skare:2009cd,
author = {Skare, O and Sheehan, N and Egeland, T},
title = {{Identification of distant family relationships}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {18},
pages = {2376--2382},
month = aug
}
@article{Koh:2008gg,
author = {Koh, H-Y and Kim, D and Lee, J and Lee, S and Shin, H-S},
title = {{Deficits in social behavior and sensorimotor gating in mice lacking phospholipase C?1}},
journal = {Genes, Brain and Behavior},
year = {2007},
volume = {0},
number = {0},
pages = {070816104557003--???},
month = aug
}
@article{Reid:2011el,
author = {Reid, J M and Arcese, P and Sardell, R J and Keller, L F},
title = {{Heritability of female extra-pair paternity rate in song sparrows (\textit{Melospiza} \textit{melodia})}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
volume = {278},
number = {1708},
pages = {1114--1120},
month = feb
}
@article{Garland:2005ek,
author = {Garland, T},
title = {{Phylogenetic approaches in comparative physiology}},
journal = {Journal of Experimental Biology},
year = {2005},
volume = {208},
number = {16},
pages = {3015--3035},
month = aug
}
@article{Surbeck:2011hr,
author = {Surbeck, Martin and Surbeck, Martin and Mundry, Roger and Mundry, Roger and Hohmann, Gottfried and Hohmann, Gottfried},
title = {{Mothers matter! Maternal support, dominance status and mating success in male bonobos (Pan paniscus).}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2011},
volume = {278},
number = {1705},
pages = {590--598},
month = feb
}
@article{Hill:2010ez,
author = {Hill, Janet E and Hill, Janet E and Fernando, W M Ursla and Fernando, W M Ursla and Zello, Gordon A and Zello, Gordon A and Tyler, Robert T and Tyler, Robert T and Dahl, Wendy J and Dahl, Wendy J and Van Kessel, andrew G and Van Kessel, andrew G},
title = {{Improvement of the representation of bifidobacteria in fecal microbiota metagenomic libraries by application of the cpn60 universal primer cocktail.}},
journal = {Applied and Environmental Microbiology},
year = {2010},
volume = {76},
number = {13},
pages = {4550--4552},
month = jul
}
@article{Pierre:2008ii,
author = {Pierre, Corvol and Pierre, Corvol and Annie, Michaud and Annie, Michaud and Olivier, Gribouval and Olivier, Gribouval and Jean Marie, Gasc and Jean Marie, Gasc and Marie Claire, Gubler and Marie Claire, Gubler},
title = {{CAN WE LIVE WITHOUT A FUNCTIONAL RENIN-ANGIOTENSIN SYSTEM?}},
journal = {Clinical and experimental pharmacology {\&} physiology},
year = {2008},
volume = {35},
number = {4},
pages = {431--433},
month = apr
}
@article{Nielsen:2009ik,
author = {Nielsen, Rasmus},
title = {{ADAPTIONISM-30 YEARS AFTER GOULD AND LEWONTIN}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {10},
pages = {2487--2490},
month = oct
}
@article{Whittington:2009bn,
author = {Whittington, Camilla M and Koh, Jennifer M S and Warren, Wesley C and Papenfuss, Anthony T and Torres, Allan M and Kuchel, Philip W and Belov, Katherine},
title = {{Understanding and utilising mammalian venom via a platypus venom transcriptome}},
journal = {Journal of Proteomics},
year = {2009},
volume = {72},
number = {2},
pages = {155--164},
month = mar
}
@article{Wheeler:2013gj,
author = {Wheeler, T J and Wheeler, T J and Eddy, S R and Eddy, S R},
title = {{nhmmer: DNA homology search with profile HMMs}},
journal = {Bioinformatics (Oxford, England)},
year = {2013},
volume = {29},
number = {19},
pages = {2487--2489},
month = sep
}
@article{OConnell:2012ij,
author = {O'Connell, Lauren A and O'Connell, Lauren A and Hofmann, Hans A},
title = {{Evolution of a vertebrate social decision-making network.}},
journal = {Science (New York, NY)},
year = {2012},
volume = {336},
number = {6085},
pages = {1154--1157},
month = jun
}
@article{Weaver:2009iu,
author = {Weaver, T D and Hublin, J J},
title = {{From the Cover: Neandertal birth canal shape and the evolution of human childbirth}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {20},
pages = {8151--8156},
month = may
}
@article{Kopp:2009hj,
author = {Kopp, M and Hermisson, J},
title = {{The Genetic Basis of Phenotypic Adaptation II: The Distribution of Adaptive Substitutions in the Moving Optimum Model}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {4},
pages = {1453--1476},
month = dec
}
@article{Wertheim:2009if,
author = {Wertheim, Joel O and Worobey, Michael},
title = {{Dating the Age of the SIV Lineages That Gave Rise to HIV-1 and HIV-2}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {5},
pages = {e1000377},
month = may
}
@article{Meirmans:2012kr,
author = {Meirmans, Patrick G},
title = {{The trouble with isolation by distance.}},
journal = {Molecular Ecology},
year = {2012},
month = may
}
@article{Rosenbaum:2009fa,
author = {Rosenbaum, Howard C and Pomilla, Cristina and Mendez, Martin and Leslie, Matthew S and Best, Peter B and Findlay, Ken P and Minton, Gianna and Ersts, Peter J and Collins, Timothy and Engel, Marcia H and Bonatto, Sandro L and Kotze, Deon P G H and Me{\"y}er, Mike and Barendse, Jaco and Thornton, Meredith and Razafindrakoto, Yvette and Ngouessono, Solange and Vely, Michel and Kiszka, Jeremy},
title = {{Population Structure of Humpback Whales from Their Breeding Grounds in the South Atlantic and Indian Oceans}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {10},
pages = {e7318},
month = oct
}
@article{Westesson:2012kv,
author = {Westesson, Oscar and Westesson, Oscar and Barquist, Lars and Barquist, Lars and Holmes, Ian},
title = {{HandAlign: Bayesian multiple sequence alignment, phylogeny and ancestral reconstruction}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {8},
pages = {1170--1171}
}
@article{BUSH:1975vn,
author = {BUSH, GL},
title = {{MODES OF ANIMAL SPECIATION}},
journal = {Annual Review of Ecology and Systematics},
year = {1975},
volume = {6},
pages = {339--364}
}
@article{Sharp:2012bh,
author = {Sharp, Nathaniel P and Agrawal, Aneil F},
title = {{Evidence for elevated mutation rates in low-quality genotypes.}},
journal = {Proceedings of the National Academy of Sciences},
year = {2012},
volume = {109},
number = {16},
pages = {6142--6146},
month = apr
}
@article{He:2009dz,
author = {He, Chunyan and Kraft, Peter and Chen, Constance and Buring, Julie E and Pare, Guillaume and Hankinson, Susan E and Chanock, Stephen J and Ridker, Paul M and Hunter, David J and Chasman, Daniel I},
title = {{Genome-wide association studies identify loci associated with age at menarche and age at natural menopause}},
journal = {Nature Genetics},
year = {2009},
volume = {41},
number = {6},
pages = {724--728},
month = may
}
@article{Godfrey:2009jm,
author = {Godfrey, Stephanie S and Bull, C Michael and James, Richard and Murray, Kris},
title = {{Network structure and parasite transmission in a group living lizard, the gidgee skink, Egernia stokesii}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {7},
pages = {1045--1056},
month = apr
}
@article{Huang:2013kfa,
author = {Huang, You-Jun and Liu, Li-Li and Huang, Jian-Qin and Wang, Zheng-Jia and Chen, Fang-Fang and Zhang, Qi-Xiang and Zheng, Bing-Song and Chen, Ming},
title = {{Use of transcriptome sequencing to understand the pistillate flowering in hickory (Carya cathayensis Sarg.)}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {691--34},
month = oct
}
@article{Moller:1993ud,
author = {Moller, AP and Birkhead, TR},
title = {{CUCKOLDRY AND SOCIALITY - A COMPARATIVE-STUDY OF BIRDS}},
journal = {The American Naturalist},
year = {1993},
volume = {142},
number = {1},
pages = {118--140}
}
@article{Clay:2009hq,
author = {Clay, Christine A and Lehmer, Erin M and St Jeor, Stephen and Dearing, M Denise and Baylis, Matthew},
title = {{Sin Nombre Virus and Rodent Species Diversity: A Test of the Dilution and Amplification Hypotheses}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {7},
pages = {e6467},
month = jul
}
@article{Denk:2005hi,
author = {Denk, A G},
title = {{Paternity in mallards: effects of sperm quality and female sperm selection for inbreeding avoidance}},
journal = {Behavioral Ecology},
year = {2005},
volume = {16},
number = {5},
pages = {825--833},
month = jun
}
@article{Rzhetsky:2009hx,
author = {Rzhetsky, andrey and Shatkay, Hagit and Wilbur, W John and Bourne, Philip E},
title = {{How to Get the Most out of Your Curation Effort}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {5},
pages = {e1000391},
month = may
}
@article{Moller:1991wx,
author = {Moller, AP},
title = {{WHY MATED SONGBIRDS SING SO MUCH - MATE GUARDING AND MALE ANNOUNCEMENT OF MATE FERTILITY STATUS}},
journal = {The American Naturalist},
year = {1991},
volume = {138},
number = {4},
pages = {994--1014}
}
@article{Jiang:2013tz,
author = {Jiang, Hui and Salzman, Julia},
title = {{A penalized likelihood approach for robust estimation of isoform expression}},
journal = {arXiv.org},
year = {2013},
eprint = {1310.0379v1},
eprinttype = {arxiv},
eprintclass = {stat.ME},
month = oct
}
@article{Eames:2004gn,
author = {Eames, Ken T D and Eames, Ken T D and Keeling, Matt J and Keeling, Matt J},
title = {{Monogamous networks and the spread of sexually transmitted diseases.}},
journal = {Mathematical Biosciences},
year = {2004},
volume = {189},
number = {2},
pages = {115--130},
month = jun
}
@article{Stoner:2011jk,
author = {Stoner, K A and Stoner, K A and Rabe, L K and Rabe, L K and Austin, M N and Austin, M N and Meyn, L A and Meyn, L A and Hillier, S L and Hillier, S L},
title = {{Incidence and Epidemiology of Streptococcus pseudoporcinus in the Genital Tract}},
journal = {Journal of Clinical Microbiology},
year = {2011},
volume = {49},
number = {3},
pages = {883--886},
month = mar
}
@article{Foster:2006fr,
author = {Foster, Kevin R and Wenseleers, Tom and Ratnieks, Francis L W and Queller, David C},
title = {{There is nothing wrong with inclusive fitness}},
journal = {Trends In Ecology {\&} Evolution},
year = {2006},
volume = {21},
number = {11},
pages = {599--600},
month = nov
}
@article{Earl:2011gt,
author = {Earl, Dent and Bradnam, Keith and St John, John and Darling, Aaron and Lin, Dawei and Fass, Joseph and Yu, Hung On Ken and Buffalo, Vince and Zerbino, Daniel R and Diekhans, Mark and Nguyen, Ngan and Ariyaratne, Pramila Nuwantha and Sung, Wing-Kin and Ning, Zemin and Haimel, Matthias and Simpson, Jared T and Fonseca, Nuno A and Birol, Inan{\c c} and Docking, T Roderick and Ho, Isaac Y and Rokhsar, Daniel S and Chikhi, Rayan and Lavenier, Dominique and Chapuis, Guillaume and Naquin, Delphine and Maillet, Nicolas and Schatz, Michael C and Kelley, David R and Phillippy, Adam M and Koren, Sergey and Yang, Shiaw-Pyng and Wu, Wei and Chou, Wen-Chi and Srivastava, Anuj and Shaw, Timothy I and Ruby, J Graham and Skewes-Cox, Peter and Betegon, Miguel and Dimon, Michelle T and Solovyev, Victor and Seledtsov, Igor and Kosarev, Petr and Vorobyev, Denis and Ramirez-Gonzalez, Ricardo and Leggett, Richard and MacLean, Dan and Xia, Fangfang and Luo, Ruibang and Li, Zhenyu and Xie, Yinlong and Liu, Binghang and Gnerre, Sante and Maccallum, Iain and Przybylski, Dariusz and Ribeiro, Filipe J and Yin, Shuangye and Sharpe, Ted and Hall, Giles and Kersey, Paul J and Durbin, Richard and Jackman, Shaun D and Chapman, Jarrod A and Huang, Xiaoqiu and Derisi, Joseph L and Caccamo, Mario and Li, Yingrui and Jaffe, David B and Green, Richard E and Haussler, David and Korf, Ian and Paten, Benedict},
title = {{Assemblathon 1: a competitive assessment of \textit{de novo} short read assembly methods.}},
journal = {Genome Research},
year = {2011},
volume = {21},
number = {12},
pages = {2224--2241},
month = dec
}
@incollection{Peng:2010do,
author = {Peng, Yu and Leung, Henry C M and Yiu, S M and Chin, Francis Y L},
title = {{IDBA {\textendash} A Practical Iterative \textit{de Bruijn} Graph De Novo Assembler}},
booktitle = {Research in Computational {\ldots}},
year = {2010},
pages = {426--440},
publisher = {Springer Berlin Heidelberg},
address = {Berlin, Heidelberg}
}
@article{Anonymous:DfmQ516g,
title = {{DEGraph}},
year = {2011},
pages = {1--25},
month = mar
}
@article{Endler:2009cl,
author = {Endler, John A and Rojas, Bibiana},
title = {{The Spatial Pattern of Natural Selection When Selection Depends on Experience}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {3},
pages = {E62--E78},
month = mar
}
@article{While:2009jg,
author = {While, G M and Uller, T and Wapstra, E},
title = {{Family conflict and the evolution of sociality in reptiles}},
journal = {Behavioral Ecology},
year = {2009},
volume = {20},
number = {2},
pages = {245--250},
month = mar
}
@article{Kleven:2007fp,
author = {Kleven, Oddmund and Oigarden, Trond and Foyn, Bjorn E and Moksnes, Arne and Roskaft, Eivin and Rudolfsen, Geir and Stokke, Bard G and Lifjeld, Jan T},
title = {{Low frequency of extrapair paternity in the common redstart (Phoenicurus phoenicurus)}},
journal = {Journal of Ornithology},
year = {2007},
volume = {148},
number = {3},
pages = {373--378},
month = jun
}
@article{Babik:2005fa,
author = {Babik, W and Durka, W and Radwan, J},
title = {{Sequence diversity of the MHC DRB gene in the Eurasian beaver (Castor fiber)}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {14},
pages = {4249--4257},
month = nov
}
@article{Baldauf:2009kq,
author = {Baldauf, Sebastian A and Kullmann, Harald and Schroth, Stefanie H and Th{\"u}nken, Timo and Bakker, Theo CM},
title = {{You can't always get what you want: size assortative mating by mutual mate choice as a resolution of sexual conflict}},
journal = {BMC Evolutionary Biology},
year = {2009},
volume = {9},
number = {1},
pages = {129}
}
@article{Hudson:2009jp,
author = {Hudson, Nicholas J and Reverter, Antonio and Dalrymple, Brian P},
title = {{A Differential Wiring Analysis of Expression Data Correctly Identifies the Gene Containing the Causal Mutation}},
journal = {PLOS Computational Biology},
year = {2009},
volume = {5},
number = {5},
pages = {e1000382}
}
@article{Spencer:2009fq,
author = {Spencer, Chris C A and Su, Zhan and Donnelly, Peter and Marchini, Jonathan},
title = {{Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip}},
journal = {PLOS Genetics},
year = {2009},
volume = {5},
number = {5},
pages = {e1000477},
month = may
}
@article{Kalinowski:2009jx,
author = {Kalinowski, S T},
title = {{How well do evolutionary trees describe genetic relationships among populations?}},
journal = {Heredity},
year = {2009},
volume = {102},
number = {5},
pages = {506--513},
month = jan
}
@article{Luke:2011ke,
author = {L{\"u}ke, Lena and L{\"u}ke, Lena and Vicens, Alberto and Vicens, Alberto and Serra, Francois and Serra, Francois and Luque-Larena, Juan Jose and Luque-Larena, Juan Jose and Dopazo, Hern{\'a}n and Dopazo, Hern{\'a}n and Roldan, Eduardo R S and Gomendio, Montserrat},
title = {{Sexual Selection Halts the Relaxation of Protamine 2 among Rodents}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {12},
pages = {e29247},
month = dec
}
@article{Carvalho:2006wf,
author = {Carvalho, Carlos B V and Macedo, Regina H and Graves, Jefferson A},
title = {{Breeding strategies of a socially monogamous neotropical passerine: Extra-pair fertilizations, behavior, and morphology}},
journal = {The Condor},
year = {2006},
volume = {108},
number = {3},
pages = {579--590}
}
@article{Nakano:2006gw,
author = {Nakano, T},
title = {{Population genetic history of hepatitis C virus 1b infection in China}},
journal = {Journal of General Virology},
year = {2006},
volume = {87},
number = {1},
pages = {73--82},
month = jan
}
@article{Smith:2008jk,
author = {Smith, andrew D and Xuan, Zhenyu and Zhang, Michael Q},
title = {{Using quality scores and longer reads improves accuracy of Solexa read mapping}},
journal = {BMC Bioinformatics},
year = {2008},
volume = {9},
number = {1},
pages = {128}
}
@article{Belov:2004gz,
author = {Belov, K},
title = {{Marsupial MHC Class II ~ Genes Are Not Orthologous to the Eutherian ~ Gene Families}},
journal = {Journal of Heredity},
year = {2004},
volume = {95},
number = {4},
pages = {338--345},
month = jul
}
@article{Meissner:2011fp,
author = {Meissner, G W and Meissner, G W and Manoli, D S and Manoli, D S and Chavez, J F and Chavez, J F and Knapp, J M and Knapp, J M and Lin, T L and Lin, T L and Stevens, R J and Stevens, R J and Mellert, D J and Mellert, D J and Tran, D H and Tran, D H and Baker, B S and Baker, B S},
title = {{Functional Dissection of the Neural Substrates for Sexual Behaviors in \textit{Drosophila} \textit{melanogaster}}},
journal = {Genetics},
year = {2011},
volume = {189},
number = {1},
pages = {195--211},
month = sep
}
@article{Anonymous:qUKWGVM_,
title = {{Sequencing error correction without a reference genome}},
year = {2014},
pages = {1--9},
month = jan
}
@article{Matthee:2007jr,
author = {Matthee, Conrad A and Eick, Geeta and Willows-Munro, Sandi and Montgelard, Claudine and Pardini, Amanda T and Robinson, Terence J},
title = {{Indel evolution of mammalian introns and the utility of non-coding nuclear markers in eutherian phylogenetics}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2007},
volume = {42},
number = {3},
pages = {827--837},
month = mar
}
@article{Rubenstein:2007js,
author = {Rubenstein, D R},
title = {{Territory quality drives intraspecific patterns of extrapair paternity}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {6},
pages = {1058--1064},
month = aug
}
@article{Yu:2007gx,
author = {Yu, H and Jansen, R and Stolovitzky, G and Gerstein, M},
title = {{Total ancestry measure: quantifying the similarity in tree-like classification, with genomic applications}},
journal = {Bioinformatics (Oxford, England)},
year = {2007},
volume = {23},
number = {16},
pages = {2163--2173},
month = sep
}
@article{Kivleniece:2010fe,
author = {Kivleniece, Inese and Krams, Indrikis and Daukste, Janina and Krama, Tatajana and Rantala, Markus J},
title = {{Sexual attractiveness of immune-challenged male mealworm beetles suggests terminal investment in reproduction}},
journal = {Animal Behaviour},
year = {2010},
volume = {80},
number = {6},
pages = {1015--1021},
month = dec
}
@article{PARKER:1970vg,
author = {Parker, GA},
title = {{SPERM COMPETITION AND ITS EVOLUTIONARY EFFECT ON COPULA DURATION IN FLY SCATOPHAGA-STERCORARIA}},
journal = {Journal of Insect Physiology},
year = {1970},
volume = {16},
number = {7},
pages = {1301--{\&}}
}
@article{Graser:1996vv,
author = {Graser, R and OHUigin, C and VINCEK, V and Meyer, A and Klein, J},
title = {{Trans-species polymorphism of class II Mhc loci in danio fishes}},
journal = {Immunogenetics},
year = {1996},
volume = {44},
number = {1},
pages = {36--48}
}
@article{Bollmer:2005uo,
author = {Bollmer, JL and Whiteman, NK and Cannon, MD and Bednarz, JC and de Vries, T and Parker, PG},
title = {{Population genetics of the Galapagos Hawk (\textit{Buteo galapagoensis}): Genetic monomorphism within isolated populations}},
journal = {Auk},
year = {2005},
volume = {122},
number = {4},
pages = {1210--1224}
}
@article{Fullwood:2009ba,
author = {Fullwood, M J and Wei, C L and Liu, E T and Ruan, Y},
title = {{Next-generation DNA sequencing of paired-end tags (PET) for transcriptome and genome analyses}},
journal = {Genome Research},
year = {2009},
volume = {19},
number = {4},
pages = {521--532},
month = apr
}
@article{Kamimura:2012fv,
author = {Kamimura, Yoshitaka},
title = {{Correlated evolutionary changes in \textit{Drosophila} female genitalia reduce the possible infection risk caused by male copulatory wounding}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
month = may
}
@article{Lewis:2008db,
author = {Lewis, Z and Price, T A R and Wedell, N},
title = {{Sperm competition, immunity, selfish genes and cancer}},
journal = {Cellular and Molecular Life Sciences},
year = {2008},
volume = {65},
number = {20},
pages = {3241--3254},
month = jun
}
@article{Biesecker:2010ki,
author = {Biesecker, Leslie G},
title = {{Exome sequencing makes medical genomics a reality}},
journal = {Nature Genetics},
year = {2010},
volume = {42},
number = {1},
pages = {13--14},
month = jan
}
@article{Reilly:1999vx,
author = {Reilly, A and Ward, RD},
title = {{Microsatellite loci to determine population structure of the Patagonian toothfish Dissostichus eleginoides}},
journal = {Molecular Ecology},
year = {1999},
volume = {8},
number = {10},
pages = {1753--1754}
}
@article{Ivics:2009cu,
author = {Ivics, Zolt{\'a}n},
title = {{Genomic parasites and genome evolution}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {4},
pages = {306}
}
@article{Tsutsui:2001vy,
author = {Tsutsui, ND and Case, TJ},
title = {{Population genetics and colony structure of the argentine ant (Linepithema humile) in its native and introduced ranges}},
journal = {Evolution},
year = {2001},
volume = {55},
number = {5},
pages = {976--985}
}
@article{Sogabe:2007kv,
author = {Sogabe, A and Yanagisawa, Y},
title = {{Sex-role reversal of a monogamous pipefish without higher potential reproductive rate in females}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2007},
volume = {274},
number = {1628},
pages = {2959--2963},
month = dec
}
@article{Spong:2008kx,
author = {Spong, Goran F and Hodge, Sarah J and Young, andrew J and Clutton Brock, Tim H},
title = {{Factors affecting the reproductive success of dominant male meerkats}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {9},
pages = {2287--2299},
month = apr
}
@article{Sherman:1995gk,
author = {Sherman, Paul W and Lacey, Eileen A and Reeve, Hudson K and Keller, Laurent},
title = {{The eusociality continuum}},
journal = {Behavioral Ecology},
year = {1995},
volume = {6},
number = {1},
pages = {102--108},
month = mar
}
@article{POLLAK:1983vf,
author = {POLLAK, E},
title = {{A NEW METHOD FOR ESTIMATING THE EFFECTIVE POPULATION-SIZE FROM ALLELE FREQUENCY CHANGES}},
journal = {Genetics},
year = {1983},
volume = {104},
number = {3},
pages = {531--548}
}
@article{FernandezdeMera:2009ji,
author = {Fernandez-de-Mera, I G and Vicente, J and Perez de la Lastra, J M and Mangold, A J and Naranjo, V and Fierro, Y and de La Fuente, J and Gortazar, C},
title = {{Reduced major histocompatibility complex class II polymorphism in a hunter-managed isolated Iberian red deer population}},
journal = {Journal of Zoology},
year = {2009},
volume = {277},
number = {2},
pages = {157--170},
month = feb
}
@article{Schulte:2010er,
author = {Schulte, R D and Makus, C and Hasert, B and Michiels, N K and Schulenburg, H},
title = {{Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasite}},
journal = {Proceedings of the National Academy of Sciences},
year = {2010},
volume = {107},
number = {16},
pages = {7359--7364},
month = apr
}
@article{Drake:2008bn,
author = {Drake, Anna and Fraser, David and Weary, Daniel M},
title = {{Parent{\textendash}offspring resource allocation in domestic pigs}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {62},
number = {3},
pages = {309--319},
month = jun
}
@article{DUTILLEUL:1993wz,
author = {DUTILLEUL, P and DUTILLEUL, P},
title = {{SPATIAL HETEROGENEITY AND THE DESIGN OF ECOLOGICAL FIELD EXPERIMENTS}},
journal = {Ecology},
year = {1993},
volume = {74},
number = {6},
pages = {1646--1658}
}
@article{BroJorgensen:2007ea,
author = {Bro-Jorgensen, Jakob},
title = {{Reversed Sexual Conflict in a Promiscuous Antelope}},
journal = {Current Biology},
year = {2007},
volume = {17},
number = {24},
pages = {2157--2161},
month = dec
}
@article{Hayes:2006bk,
author = {Hayes, Sean A and Pearse, Devon E and Costa, Daniel P and Harvey, James T and Le Boeuf, Burney J and Garza, John Carlos},
title = {{Mating system and reproductive success in eastern Pacific harbour seals}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {10},
pages = {3023--3034},
month = jun
}
@article{Dolan:2007jo,
author = {Dolan, A C and Murphy, M T and Redmond, L J and Sexton, K and Duffield, D},
title = {{Extrapair paternity and the opportunity for sexual selection in a socially monogamous passerine}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {6},
pages = {985--993},
month = aug
}
@article{Rabelo:2009kh,
author = {Rabelo, Elida M and Hall, Ross S and Loukas, Alex and Cooper, Leanne and Hu, Min and Ranganathan, Shoba and Gasser, Robin B},
title = {{Improved insights into the transcriptomes of the human hookworm Necator americanus {\textemdash} Fundamental and biotechnological implications}},
journal = {Biotechnology Advances},
year = {2009},
volume = {27},
number = {2},
pages = {122--132},
month = mar
}
@article{Wang:2009di,
author = {Wang, Zhong and Wang, Zhong and Gerstein, Mark and Snyder, Michael},
title = {{RNA-Seq: a revolutionary tool for transcriptomics.}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {1},
pages = {57--63},
month = jan
}
@article{Valle:2014gu,
author = {Valle, M and Schabauer, H and Pacher, C and Stockinger, H and Stamatakis, A and Robinson-Rechavi, M and Salamin, N},
title = {{Optimization strategies for fast detection of positive selection on phylogenetic trees}},
journal = {Bioinformatics (Oxford, England)},
year = {2014},
volume = {30},
number = {8},
pages = {1129--1137},
month = apr
}
@article{Dabert:2010iz,
author = {Dabert, Miroslawa and Witalinski, Wojciech and Kazmierski, andrzej and Olszanowski, Ziemowit and Dabert, Jacek},
title = {{Molecular phylogeny of acariform mites (Acari, Arachnida): Strong conflict between phylogenetic signal and long-branch attraction artifacts}},
journal = {MOLECULAR PHYLOGENETICS AND EVOLUTION},
year = {2010},
volume = {56},
number = {1},
pages = {222--241},
month = jul
}
@article{Case:2007bb,
author = {Case, R J and Boucher, Y and Dahll{\"o}f, I and Holmstrom, C and Doolittle, W F and Kjelleberg, S},
title = {{Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies}},
journal = {Applied and Environmental Microbiology},
year = {2006},
volume = {73},
number = {1},
pages = {278--288},
month = dec
}
@article{Barreto:2008hh,
author = {Barreto, Felipe S and Avise, John C},
title = {{Polygynandry and sexual size dimorphism in the sea spider Ammothea hilgendorfi(Pycnogonida: Ammotheidae), a marine arthropod with brood-carrying males}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {18},
pages = {4164--4175},
month = sep
}
@article{Cumbie:2011tu,
author = {Cumbie, J.S. and Cumbie, J.S. and Kimbrel, J.A. and Kimbrel, J.A. and Di, Y. and Di, Y. and Schafer, D.W. and Schafer, D.W. and Wilhelm, L.J. and Wilhelm, L.J. and Fox, S.E. and Fox, S.E. and Sullivan, C.M. and Sullivan, C.M. and Curzon, A.D. and Curzon, A.D. and Carrington, J.C. and Carrington, J.C. and Mockler, T.C. and Mockler, T.C.},
title = {{GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {10},
pages = {e25279}
}
@article{Rosenblum:2010ef,
author = {Rosenblum, Erica Bree and Harmon, Luke J},
title = {{{\textquotedblleft}SAME SAME BUT DIFFERENT{\textquotedblright}: REPLICATED ECOLOGICAL SPECIATION AT WHITE SANDS}},
journal = {Evolution},
year = {2010},
volume = {65},
number = {4},
pages = {946--960},
month = dec
}
@article{Friedl:2005tp,
author = {Friedl, TWP and Klump, GM},
title = {{Extrapair fertilizations in red bishops (Euplectes orix): Do females follow conditional extrapair strategies?}},
journal = {Auk},
year = {2005},
volume = {122},
number = {1},
pages = {57--70}
}
@article{Bryja:2006ds,
author = {Bryja, J and Galan, M and Charbonnel, N and Cosson, J F},
title = {{Duplication, balancing selection and trans-species evolution explain the high levels of polymorphism of the DQA MHC class II gene in voles (Arvicolinae)}},
journal = {Immunogenetics},
year = {2006},
volume = {58},
number = {2-3},
pages = {191--202},
month = feb
}
@article{Dumbacher:2012ko,
author = {Dumbacher, John P and Dumbacher, John P and Rathbun, Galen B and Rathbun, Galen B and Smit, Hanneline A and Smit, Hanneline A and Eiseb, Seth J and Eiseb, Seth J},
title = {{Phylogeny and Taxonomy of the Round-Eared Sengis or Elephant-Shrews, Genus Macroscelides (Mammalia, Afrotheria, Macroscelidea)}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {3},
pages = {e32410},
month = mar
}
@article{Singhal:2013kq,
author = {Singhal, S and Moritz, C},
title = {{Reproductive isolation between phylogeographic lineages scales with divergence}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2013},
volume = {280},
number = {1772},
pages = {20132246--20132246},
month = oct
}
@article{Lize:2013fw,
author = {Lize, Anne and McKay, Raegan and Lewis, Zenobia},
title = {{Gut microbiota and kin recognition}},
journal = {Trends In Ecology {\&} Evolution},
year = {2013},
volume = {28},
number = {6},
pages = {325--326},
month = jun
}
@article{DYKHUIZEN:1993uf,
author = {DYKHUIZEN, DE and POLIN, DS and POLIN, DS and DUNN, JJ and DUNN, JJ and WILSKE, B and WILSKE, B and PREACMURSIC, V and PREACMURSIC, V and DATTWYLER, RJ and DATTWYLER, RJ and LUFT, BJ and LUFT, BJ},
title = {{BORRELIA-BURGDORFERI IS CLONAL - IMPLICATIONS FOR TAXONOMY AND VACCINE DEVELOPMENT}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {1993},
volume = {90},
number = {21},
pages = {10163--10167}
}
@article{Double:2003dk,
author = {Double, M C and Cockburn, A},
title = {{Subordinate superb fairy-wrens (Malurus cyaneus) parasitize the reproductive success of attractive dominant males}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2003},
volume = {270},
number = {1513},
pages = {379--384},
month = feb
}
@article{Le:2013dy,
author = {Le, H S and Schulz, M H and McCauley, B M and Hinman, V F and Bar-Joseph, Z},
title = {{Probabilistic error correction for RNA sequencing}},
journal = {Nucleic Acids Research},
year = {2013},
volume = {41},
number = {10},
pages = {1--11}
}
@article{Anonymous:unF1p4ly,
title = {{mammalian species ovis canadensis}},
year = {2001},
pages = {9},
month = dec
}
@article{Pyrkosz:2013tm,
author = {Pyrkosz, Alexis Black and Cheng, Hans and Brown, C Titus},
title = {{RNA-Seq Mapping Errors When Using Incomplete Reference Transcriptomes of Vertebrates}},
journal = {arXiv.org},
year = {2013},
eprint = {1303.2411v1},
eprinttype = {arxiv},
eprintclass = {q-bio.GN},
month = mar
}
@article{Christman:2005bh,
author = {Christman, Mary C. and Lewis, Danny},
title = {{Spatial distribution of dominant animals within a group: comparison of four statistical tests of location}},
journal = {Animal Behaviour},
year = {2005},
volume = {70},
number = {1},
pages = {73--82},
month = jul
}
@article{Revell:2008cf,
author = {Revell, Liam and Harmon, Luke and Collar, David},
title = {{Phylogenetic Signal, Evolutionary Process, and Rate}},
journal = {Systematic Biology},
year = {2008},
volume = {57},
number = {4},
pages = {591--601},
month = aug
}
@article{Parker:2013et,
author = {Parker, Geoff A and Parker, Geoff A and Birkhead, Tim R and Birkhead, Tim R},
title = {{Polyandry: the history of a revolution}},
journal = {Philosophical Transactions of The Royal Society of London Series B-Biological Sciences},
year = {2013},
volume = {368},
month = jan
}
@article{Bellinger:2003tk,
author = {Bellinger, M Renee and Bellinger, M Renee and Johnson, Jeff A and Johnson, Jeff A and Toepfer, John and Toepfer, John and Dunn, Peter and Dunn, Peter},
title = {{Loss of genetic variation in Greater Prairie Chickens following a population bottleneck in Wisconsin, USA}},
journal = {Conservation Biology},
year = {2003},
volume = {17},
number = {3},
pages = {717--724}
}
@article{Crispo:2006ih,
author = {Crispo, E and Crispo, E and Bentzen, P and Bentzen, P and Reznick, DN and Kinnison, MT and Kinnison, MT and Hendry, AP and Hendry, AP},
title = {{The relative influence of natural selection and geography on gene flow in guppies}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {1},
pages = {49--62}
}
@article{Albrecht:2006wd,
author = {Albrecht, T and Kreisinger, J and Pialek, J},
title = {{The strength of direct selection against female promiscuity is associated with rates of extrapair fertilizations in socially monogamous songbirds}},
journal = {The American Naturalist},
year = {2006},
volume = {167},
number = {5},
pages = {739--744}
}
@article{Cheung:2005dw,
author = {Cheung, Sau W and Shaw, Chad A and Yu, Wei and Li, Jiangzham and Ou, Zhishuo and Patel, Ankita and Yatsenko, Svetlana A and Cooper, Mitchell L and Furman, Patti and Stankiewicz, Pawal and Lupski, James R and Chinault, A Craig and Beaudet, Arthur L},
title = {{Development and validation of a CGH microarray for clinical cytogenetic diagnosis}},
journal = {Genetics in Medicine},
year = {2005},
volume = {7},
number = {6},
pages = {422--432},
month = jul
}
@article{Burtonchellew:2007df,
author = {Burton-Chellew, Maxwell N and Beukeboom, Leo W and West, Stu A and Shuker, David M},
title = {{Laboratory evolution of polyandry in the parasitoid wasp Nasonia vitripennis}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {5},
pages = {1147--1154},
month = nov
}
@article{Yang:2009ka,
author = {Yang, I V and Wade, C M and Kang, H M and Alper, S and Rutledge, H and Lackford, B and Eskin, E and Daly, M J and Schwartz, D A},
title = {{Identification of Novel Genes That Mediate Innate Immunity Using Inbred Mice}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {4},
pages = {1535--1544},
month = dec
}
@article{Green:1995vn,
author = {Green, DJ and Cockburn, A and Hall, ML and Osmond, H and Dunn, PO},
title = {{Increased opportunities for cuckoldry may be why dominant male fairy-wrens tolerate helpers}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1995},
volume = {262},
number = {1365},
pages = {297--303}
}
@article{Lemon:2010id,
author = {Lemon, Katherine P. and Lemon, Katherine P. and Klepac-Ceraj, Vanja and Klepac-Ceraj, Vanja and Schiffer, Hilary K. and Schiffer, Hilary K. and Brodie, Eoin L and Lynch, Susan V and Lynch, Susan V and Kolter, Roberto and Kolter, Roberto},
title = {{Comparative Analyses of the Bacterial Microbiota of the Human Nostril and Oropharynx}},
journal = {Mbio},
year = {2010},
volume = {1},
number = {3}
}
@article{Peterson:2009by,
author = {Peterson, Brant K and Hare, Emily E and Iyer, Venky N and Storage, Steven and Conner, Laura and Papaj, Daniel R and Kurashima, Rick and Jang, Eric and Eisen, Michael B},
title = {{Big Genomes Facilitate the Comparative Identification of Regulatory Elements}},
journal = {PLOS ONE},
year = {2009},
volume = {4},
number = {3},
pages = {e4688},
month = mar
}
@article{Hoefele:2010dg,
author = {Hoefele, Julia and Lange-Sperandio, B{\"a}rbel and Ruessmann, Despina and Gl{\"o}ckner-Pagel, Judith and Alberer, Martin and Benz, Marcus R and Nagel, Mato and Weber, Lutz T},
title = {{Novel heterozygous COL4A3 mutation in a family with late-onset ESRD}},
journal = {Pediatric nephrology (Berlin, Germany)},
year = {2010},
volume = {25},
number = {8},
pages = {1539--1542},
month = feb
}
@article{Leese:2012ig,
author = {Leese, Florian and Leese, Florian and Brand, Philipp and Brand, Philipp and Rozenberg, andrey and Rozenberg, andrey and Mayer, Christoph and Mayer, Christoph and Agrawal, Shobhit and Agrawal, Shobhit and Dambach, Johannes and Dambach, Johannes and Dietz, Lars and Dietz, Lars and Doemel, Jana S and Doemel, Jana S and Goodall-Copstake, William P and Goodall-Copstake, William P and Held, Christoph and Held, Christoph and Jackson, Jennifer A and Jackson, Jennifer A and Lampert, Kathrin P and Lampert, Kathrin P and Linse, Katrin and Linse, Katrin and Macher, Jan N and Macher, Jan N and Nolzen, Jennifer and Nolzen, Jennifer and Raupach, Michael J and Raupach, Michael J and Rivera, Nicole T and Rivera, Nicole T and Schubart, Christoph D and Schubart, Christoph D and Striewski, Sebastian and Striewski, Sebastian and Tollrian, Ralph and Tollrian, Ralph and Sands, Chester J and Sands, Chester J},
title = {{Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {11},
pages = {e49202},
month = nov
}
@article{Davies:1995wc,
author = {Davies, NB and HARTLEY, IR and HATCHWELL, BJ and DESROCHERS, A and SKEER, J and NEBEL, D},
title = {{THE POLYGYNANDROUS MATING SYSTEM OF THE ALPINE ACCENTOR, PRUNELLA-COLLARIS .1. ECOLOGICAL CAUSES AND REPRODUCTIVE CONFLICTS}},
journal = {Animal Behaviour},
year = {1995},
volume = {49},
number = {3},
pages = {769--788}
}
@article{SLIERENDREGT:1995vs,
author = {SLIERENDREGT, BL and SLIERENDREGT, BL and Otting, N and KENTER, M and Bontrop, RE},
title = {{ALLELIC DIVERSITY AT THE MHC-DP LOCUS IN RHESUS MACAQUES (MACACA-MULATTA)}},
journal = {Immunogenetics},
year = {1995},
volume = {41},
number = {1},
pages = {29--37}
}
@article{DiLeo:2011cb,
author = {DiLeo, Matthew V and Strahan, Gary D and den Bakker, Meghan and Hoekenga, Owen A},
title = {{Weighted Correlation Network Analysis (WGCNA) Applied to the Tomato Fruit Metabolome}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {10},
pages = {e26683},
month = oct
}
@article{Sims:2009gm,
author = {Sims, G E and Jun, S R and Wu, G A and Kim, S H},
title = {{Whole-genome phylogeny of mammals: Evolutionary information in genic and nongenic regions}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {40},
pages = {17077--17082},
month = oct
}
@article{Costa:1994ve,
author = {Costa, James T and Ross, Kenneth G.},
title = {{Hierarchical genetic structure and gene flow in macrogeographic populations of the eastern tent caterpillar (\textit{Malacosoma} \textit{americanum})}},
journal = {Evolution},
year = {1994},
pages = {1158--1167}
}
@article{Anonymous:2012he,
author = {Akalin, Altuna and Garrett-Bakelman, Francine E and Kormaksson, Matthias and Busuttil, Jennifer and Zhang, Lu and Khrebtukova, Irina and Milne, Thomas A and Huang, Yongsheng and Biswas, Debabrata and Hess, Jay L and Allis, C David and Roeder, Robert G and Valk, Peter J M and L{\"o}wenberg, Bob and Delwel, Ruud and Fernandez, Hugo F and Paietta, Elisabeth and Tallman, Martin S and Schroth, Gary P and Mason, Christopher E and Melnick, Ari and Figueroa, Maria E},
title = {{Base-Pair Resolution DNA Methylation Sequencing Reveals Profoundly Divergent Epigenetic Landscapes in Acute Myeloid Leukemia}},
journal = {PLOS Genetics},
year = {2012},
volume = {8},
number = {6},
pages = {e1002781},
month = jun
}
@article{Costello:2010eo,
author = {Costello, Elizabeth K and Costello, Elizabeth K and Gordon, Jeffrey I and Gordon, Jeffrey I and Secor, Stephen M and Secor, Stephen M and Knight, Rob and Knight, Rob},
title = {{Postprandial remodeling of the gut microbiota in Burmese pythons.}},
journal = {The ISME Journal},
year = {2010},
volume = {4},
number = {11},
pages = {1375--1385},
month = nov
}
@article{Plath:2009fe,
author = {Plath, Martin and Kromuszczynski, Katja and Tiedemann, Ralph},
title = {{Audience effect alters male but not female mating preferences}},
journal = {Behavioral Ecology and Sociobiology},
year = {2008},
volume = {63},
number = {3},
pages = {381--390},
month = oct
}
@article{KOBMOO:2012cb,
author = {KOBMOO, N and MONGKOLSAMRIT, S and TASANATHAI, K and THANAKITPIPATTANA, D and THANAKITPIPATTANA, D and LUANGSA-ARD, J J},
title = {{Molecular phylogenies reveal host-specific divergence of Ophiocordyceps unilateralis sensu lato following its host ants}},
journal = {Molecular Ecology},
year = {2012},
pages = {no--no},
month = apr
}
@article{Brown:1993wc,
author = {Brown, JH and JARDETZKY, TS and GORGA, JC and STERN, LJ and URBAN, RG and STROMINGER, JL and WILEY, DC},
title = {{3-Dimensional Structure of the Human Class-Ii Histocompatibility Antigen Hla-Dr1}},
journal = {Nature},
year = {1993},
volume = {364},
number = {6432},
pages = {33--39}
}
@article{Pergams:2008ca,
author = {Pergams, Oliver R W and Lacy, Robert C},
title = {{Rapid morphological and genetic change in Chicago-area \textit{Peromyscus}}},
journal = {Molecular Ecology},
year = {2008},
volume = {17},
number = {1},
pages = {450--463},
month = jan
}
@article{Li:2013wn,
author = {Li, Heng},
title = {{Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM}},
year = {2013},
eprint = {1303.3997},
eprinttype = {arxiv},
month = mar
}
@article{Cant:2002tx,
author = {Cant, MA and Reeve, HK},
title = {{Female control of the distribution of paternity in cooperative breeders}},
journal = {The American Naturalist},
year = {2002},
volume = {160},
number = {5},
pages = {602--611}
}
@article{SchmidtNielsen:1950wg,
author = {Schmidt-Nielsen, B and Schmidt-Nielsen, K},
title = {{Pulmonary Water Loss in Desert Rodents}},
journal = {American Journal of Physiology},
year = {1950},
volume = {162},
number = {1},
pages = {31--36}
}
@article{Liu:2010er,
author = {Liu, E Y and Zhang, Q and Mcmillan, L and de Villena, F P-M and Wang, W},
title = {{Efficient genome ancestry inference in complex pedigrees with inbreeding}},
journal = {Bioinformatics (Oxford, England)},
year = {2010},
volume = {26},
number = {12},
pages = {i199--i207},
month = jun
}
@article{White:2011bm,
author = {White, Jo{\"e}l and White, Jo{\"e}l and Richard, Murielle and Massot, Manuel and Massot, Manuel and Meylan, Sandrine and Meylan, Sandrine},
title = {{Cloacal Bacterial Diversity Increases with Multiple Mates: Evidence of Sexual Transmission in Female Common Lizards}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {7},
pages = {e22339},
month = jul
}
@article{Armstrong:2012gs,
author = {Armstrong, L E and Ganio, M S and Casa, D J and Lee, E C and McDermott, B P and Klau, J F and Jimenez, L and Le Bellego, L and Chevillotte, E and Lieberman, H R},
title = {{Mild dehydration affects mood in healthy young women.}},
journal = {Journal of Nutrition},
year = {2012},
volume = {142},
number = {2},
pages = {382--388},
month = feb
}
@article{MARTINAMORRIS:vn,
author = {MARTINA MORRIS, P},
title = {{Concurrent Partnerships and Syphilis Persistence}},
journal = {depts.washington.edu}
}
@article{Rowe:2012gq,
author = {Rowe, M and Rowe, M and Laskemoen, T and Johnsen, A and Lifjeld, J T},
title = {{Evolution of sperm structure and energetics in passerine birds}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {280},
number = {1753},
pages = {20122616--20122616},
month = dec
}
@article{Cornwallis:2006ul,
author = {Cornwallis, Charlie K and Birkhead, Tim R},
title = {{Social status and availability of females determine patterns of sperm allocation in the fowl}},
journal = {Evolution},
year = {2006},
volume = {60},
number = {7},
pages = {1486--1493}
}
@article{Wang:2010do,
author = {Wang, Jinliang},
title = {{coancestry: a program for simulating, estimating and analysing relatedness and inbreeding coefficients}},
journal = {Molecular Ecology Resources},
year = {2010},
volume = {11},
number = {1},
pages = {141--145},
month = dec
}
@article{Martin:2010cm,
author = {Martin, Julien G A and Festa-Bianchet, Marco},
title = {{Bighorn Ewes Transfer the Costs of Reproduction to Their Lambs}},
journal = {The American Naturalist},
year = {2010},
volume = {176},
number = {4},
pages = {414--423},
month = oct
}
@article{Marino:2012hl,
author = {Marino, Jorgelina and Sillero-Zubiri, Claudio and Johnson, Paul J and Macdonald, David W},
title = {{Ecological bases of philopatry and cooperation in Ethiopian wolves}},
journal = {Behavioral Ecology and Sociobiology},
year = {2012},
volume = {66},
number = {7},
pages = {1005--1015},
month = may
}
@article{Cant:2003fj,
author = {Cant, Michael A},
title = {{Patterns of helping effort in co-operatively breeding banded mongooses (Mungos mungo)}},
journal = {Journal of Zoology},
year = {2003},
volume = {259},
number = {2},
pages = {115--121},
month = feb
}
@article{Losdat:2011cu,
author = {Losdat, Sylvain and Richner, Heinz and Blount, Jonathan D and Helfenstein, Fabrice},
title = {{Immune activation reduces sperm quality in the great tit.}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {7},
pages = {e22221}
}
@article{Lage:2006dh,
author = {Lage, Christopher and Kornfield, Irv},
title = {{Reduced Genetic Diversity and Effective Population Size in an Endangered Atlantic Salmon (Salmo Salar) Population from Maine, USA}},
journal = {Conservation Genetics},
year = {2006},
volume = {7},
number = {1},
pages = {91--104},
month = feb
}
@article{Moran:2012be,
author = {Moran, NA and Hansen, AK and Powell, JE},
title = {{Distinctive Gut Microbiota of Honey Bees Assessed Using Deep Sampling from Individual Worker Bees}},
journal = {PLOS ONE},
year = {2012}
}
@article{Good:1953tn,
author = {Good, IJ},
title = {{The Population Frequencies of Species and the Estimation of Population Parameters}},
journal = {Biometrika},
year = {1953},
volume = {40},
pages = {237--264}
}
@article{Seo:2002wm,
author = {Seo, TK and Thorne, JL and Hasegawa, M and Kishino, H},
title = {{Estimation of effective population size of HIV-1 within a host: A pseudomaximum-likelihood approach}},
journal = {Genetics},
year = {2002},
volume = {160},
number = {4},
pages = {1283--1293}
}
@article{Bjork:2006jt,
author = {Bjork, Adam and Pitnick, Scott},
title = {{Intensity of sexual selection along the anisogamy{\textendash}isogamy continuum}},
journal = {Nature},
year = {2006},
volume = {441},
number = {7094},
pages = {742--745},
month = jun
}
@article{vanZeveren:2007ks,
author = {van Zeveren, A M and Visser, A and Hoorens, P R and Vercruysse, J and Claerebout, E and Geldhof, P},
title = {{Evaluation of reference genes for quantitative real-time PCR in Ostertagia ostertagi by the coefficient of variation and geNorm approach}},
journal = {Molecular and Biochemical Parasitology},
year = {2007},
volume = {153},
number = {2},
pages = {224--227},
month = jun
}
@article{Martin:2011va,
author = {Martin, Marcel},
title = {{Cutadapt removes adapter sequences from high-throughput sequencing reads}},
journal = {EMBnet.journal},
year = {2011},
volume = {17},
number = {1},
pages = {pp. 10--12},
month = feb
}
@article{Xu:2009jr,
author = {Xu, Jin and Wang, Qiao},
title = {{A polyandrous female moth discriminates against previous mates to gain genetic diversity}},
journal = {Animal Behaviour},
year = {2009},
volume = {78},
number = {6},
pages = {1309--1315},
month = dec
}
@article{Mullen:2008dw,
author = {Mullen, Lynne M and Hoekstra, Hopi E},
title = {{Natural selection along an environmental gradient: a classic cline in mouse pigmentation.}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {7},
pages = {1555--1570},
month = jul
}
@article{Ferguson:2002ka,
author = {Ferguson, JN and Ferguson, JN and Young, LJ and Insel, TR},
title = {{The neuroendocrine basis of social recognition}},
journal = {Frontiers in Neuroendocrinology},
year = {2002},
volume = {23},
number = {2},
pages = {200--224}
}
@article{Crawford:2013kz,
author = {Crawford, Jacob E and Nielsen, Rasmus},
title = {{Detecting adaptive trait loci in non-model systems: divergence or admixture mapping?}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = oct
}
@article{Rokasa:2009uw,
author = {Rokasa and Rokasa},
title = {{Microsoft Word - Mosquito_solexa_v12}},
year = {2009},
pages = {1--47},
month = jul
}
@article{Kacsoh:2013kp,
author = {Kacsoh, Balint Z and Kacsoh, Balint Z and Lynch, Zachary R and Lynch, Zachary R and Mortimer, Nathan T and Mortimer, Nathan T and Schlenke, Todd A and Schlenke, Todd A},
title = {{Fruit flies medicate offspring after seeing parasites.}},
journal = {Science (New York, NY)},
year = {2013},
volume = {339},
number = {6122},
pages = {947--950},
month = feb
}
@article{Zeh:2003vo,
author = {Zeh, JA and Zeh, DW},
title = {{Toward a new sexual selection paradigm: polyandry, conflict and incompatibility (invited article)}},
journal = {Ethology},
year = {2003},
volume = {109},
number = {12},
pages = {929--950}
}
@article{ZIELINSKI:1991vg,
author = {ZIELINSKI, WJ and VANDENBERGH, JG and VANDENBERGH, JG},
title = {{EFFECT OF INTRAUTERINE POSITION AND SOCIAL DENSITY ON AGE OF 1ST REPRODUCTION IN WILD-TYPE FEMALE HOUSE MICE (MUS-MUSCULUS)}},
journal = {Journal of Comparative Psychology},
year = {1991},
volume = {105},
number = {2},
pages = {134--139}
}
@article{Librado:2009ee,
author = {Librado, P and Rozas, J},
title = {{DnaSP v5: a software for comprehensive analysis of DNA polymorphism data}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {11},
pages = {1451--1452},
month = may
}
@article{Ma:2011hq,
author = {Ma, S and Dai, Y},
title = {{Principal component analysis based methods in bioinformatics studies}},
journal = {Briefings In Bioinformatics},
year = {2011},
volume = {12},
number = {6},
pages = {714--722},
month = nov
}
@article{Anonymous:gDQ1x4ea,
title = {{cestode parasites from california mammals}},
year = {2005},
pages = {6},
month = apr
}
@article{Koontz:2001vp,
author = {Koontz, TL and Shepherd, UL and Marshall, D},
title = {{The effects of climate change on Merriam's kangaroo rat, \textit{Dipodomys} \textit{merriami}}},
journal = {Journal of Arid Environments},
year = {2001},
volume = {49},
number = {3},
pages = {581--591}
}
@article{deRoos:2009hy,
author = {de Roos, A P W and Hayes, B J and Goddard, M E},
title = {{Reliability of Genomic Predictions Across Multiple Populations}},
journal = {Genetics},
year = {2009},
volume = {183},
number = {4},
pages = {1545--1553},
month = dec
}
@article{Delhey:2006hl,
author = {Delhey, K and Peters, A and Johnsen, A and Kempenaers, B},
title = {{Fertilization success and UV ornamentation in blue tits Cyanistes caeruleus: correlational and experimental evidence}},
journal = {Behavioral Ecology},
year = {2007},
volume = {18},
number = {2},
pages = {399--409},
month = feb
}
@article{Nielsen:2003ig,
author = {Nielsen, R},
title = {{Estimating the Distribution of Selection Coefficients from Phylogenetic Data with Applications to Mitochondrial and Viral DNA}},
journal = {Molecular Biology and Evolution},
year = {2003},
volume = {20},
number = {8},
pages = {1231--1239},
month = apr
}
@article{FernandezGil:2010dy,
author = {Fernandez-Gil, Alberto and Swenson, Jon E and Granda, Carlos and Perez, Trinidad and Dominguez, Ana and Ordiz, andrEs and Naves, Javier and Delibes, Miguel},
title = {{RETRACTED: Evidence of sexually selected infanticide in an endangered brown bear population}},
journal = {Animal Behaviour},
year = {2010},
volume = {79},
number = {2},
pages = {521--527},
month = feb
}
@article{King:2005jf,
journal = {Molecular Ecology},
volume = {14},
number = {2}
}
@article{Mcdonald:2009hp,
author = {Mcdonald, David B},
title = {{Young-boy networks without kin clusters in a lek-mating manakin}},
journal = {Behavioral Ecology and Sociobiology},
year = {2009},
volume = {63},
number = {7},
pages = {1029--1034},
month = apr
}
@article{Fischman:2011vd,
author = {Fischman, B J and Fischman, B J and Woodard, S H and Woodard, S H and Robinson, G E},
title = {{Molecular evolutionary analyses of insect societies}},
journal = {Proceedings of The National Academy of Sciences of The United States of America},
year = {2011},
volume = {108},
number = {Supplement 2},
pages = {10847}
}
@article{Buonaccorsi:2012br,
author = {Buonaccorsi, Vincent P and Kimbrell, Carol A and Lynn, Eric A and Hyde, John R},
title = {{Comparative Population Genetic Analysis of Bocaccio Rockfish Sebastes paucispinis Using Anonymous and Gene-Associated Simple Sequence Repeat Loci.}},
journal = {Journal of Heredity},
year = {2012},
volume = {103},
number = {3},
pages = {391--399},
month = may
}
@article{Coller:wr,
author = {Coller, HA and Kruglyak, L},
title = {{It{\textquoteright}s the Sequence, Stupid!}},
journal = {Science (New York, NY)}
}
@article{Cutrera:2007ba,
author = {Cutrera, Ana Paula and Lacey, Eileen A},
title = {{Trans-species polymorphism and evidence of selection on class II MHC loci in tuco-tucos (Rodentia: Ctenomyidae)}},
journal = {Immunogenetics},
year = {2007},
volume = {59},
number = {12},
pages = {937--948},
month = nov
}
@article{Cantarel:2006br,
author = {Cantarel, B L},
title = {{Exploring the Relationship between Sequence Similarity and Accurate Phylogenetic Trees}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {23},
number = {11},
pages = {2090--2100},
month = aug
}
@article{Canavez:2012hq,
author = {Canavez, Flavio C and Canavez, Flavio C and Luche, Douglas D and Luche, Douglas D and Stothard, Paul and Stothard, Paul and Leite, Katia R M and Leite, Katia R M and Sousa-Canavez, Juliana M and Sousa-Canavez, Juliana M and Plastow, Graham and Plastow, Graham and Meidanis, Jo{\~a}o and Meidanis, Jo{\~a}o and Souza, Maria Ang{\'e}lica and Souza, Maria Ang{\'e}lica and Feijao, Pedro and Feijao, Pedro and Moore, Steve S and Moore, Steve S and Camara-Lopes, Luiz H and Camara-Lopes, Luiz H},
title = {{Genome Sequence and Assembly of Bos indicus.}},
journal = {Journal of Heredity},
year = {2012},
volume = {103},
number = {3},
pages = {342--348},
month = may
}
@article{Creighton:2010kv,
author = {Creighton, Chad J and Benham, Ashley L and Zhu, Huifeng and Khan, Mahjabeen F and Reid, Jeffrey G and Nagaraja, Ankur K and Fountain, Michael D and Dziadek, Olivia and Han, Derek and Ma, Lang and Kim, Jong and Hawkins, Shannon M and anderson, Matthew L and Matzuk, Martin M and Gunaratne, Preethi H},
title = {{Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {3},
pages = {e9637},
month = mar
}
@article{CHARLESWORTH:1995wz,
author = {CHARLESWORTH, D and Charlesworth, B and MORGAN, MT},
title = {{THE PATTERN OF NEUTRAL MOLECULAR VARIATION UNDER THE BACKGROUND SELECTION MODEL}},
journal = {Genetics},
year = {1995},
volume = {141},
number = {4},
pages = {1619--1632}
}
@article{Nielsen:2005kx,
author = {Nielsen, Rasmus},
title = {{MOLECULAR SIGNATURES OF NATURAL SELECTION}},
journal = {Annual Review of Genetics},
year = {2005},
volume = {39},
number = {1},
pages = {197--218},
month = dec
}
@article{Townsend:2009hi,
author = {Townsend, andrea K and Clark, Anne B and Mcgowan, Kevin J and Lovette, Irby J},
title = {{Reproductive partitioning and the assumptions of reproductive skew models in the cooperatively breeding American crow}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {2},
pages = {503--512},
month = feb
}
@article{DORAN:1954ug,
author = {DORAN, DJ},
title = {{A CATALOGUE OF THE PROTOZOA AND HELMINTHS OF NORTH AMERICAN RODENTS .2. CESTODA}},
journal = {American Midland Naturalist},
year = {1954},
volume = {52},
number = {2},
pages = {469--480}
}
@article{Bandelt:1999wb,
author = {Bandelt, HJ and Bandelt, HJ and Forster, P and Forster, P and Rohl, A and Rohl, A},
title = {{Median-joining networks for inferring intraspecific phylogenies}},
journal = {Molecular Biology and Evolution},
year = {1999},
volume = {16},
number = {1},
pages = {37--48}
}
@article{Harmon:2012ky,
author = {Harmon, Luke J},
title = {{An Inordinate Fondness for Eukaryotic Diversity}},
journal = {PLOS Biology},
year = {2012},
volume = {10},
number = {8},
pages = {e1001382},
month = aug
}
@article{Gabor:2000vu,
author = {Gabor, CR and Krenz, JD and Jaeger, RG},
title = {{Female choice, male interference, and sperm precedence in the red-spotted newt}},
journal = {Behavioral Ecology},
year = {2000},
volume = {11},
number = {1},
pages = {115--124}
}
@article{Rosenblum:2008ht,
author = {Rosenblum, E B and Stajich, J E and Maddox, N and Eisen, M B},
title = {{Global gene expression profiles for life stages of the deadly amphibian pathogen Batrachochytrium dendrobatidis}},
journal = {Proceedings of the National Academy of Sciences},
year = {2008},
volume = {105},
number = {44},
pages = {17034--17039},
month = oct
}
@article{Reinhardt:2009iq,
author = {Reinhardt, J A and Baltrus, D A and Nishimura, M T and Jeck, W R and Jones, C D and Dangl, J L},
title = {{\textit{De novo} assembly using low-coverage short read sequence data from the rice pathogen Pseudomonas syringae pv. oryzae}},
journal = {Genome Research},
year = {2008},
volume = {19},
number = {2},
pages = {294--305},
month = dec
}
@article{Chong:2012ha,
author = {Chong, Z and Chong, Z and Ruan, J and Ruan, J and Wu, C I},
title = {{Rainbow: an integrated tool for efficient clustering and assembling RAD-seq reads}},
journal = {Bioinformatics (Oxford, England)},
year = {2012},
volume = {28},
number = {21},
pages = {2732--2737},
month = oct
}
@article{Garrigan:2010bm,
author = {Garrigan, D and Lewontin, R and Wakeley, J},
title = {{Measuring the Sensitivity of Single-locus "Neutrality Tests" Using a Direct Perturbation Approach}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {27},
number = {1},
pages = {73--89},
month = dec
}
@article{Krokene:1998th,
author = {Krokene, C and Rigstad, K and Dale, M and Lifjeld, JT},
title = {{The function of extrapair paternity in blue tits and great tits: good genes or fertility insurance?}},
journal = {Behavioral Ecology},
year = {1998},
volume = {9},
number = {6},
pages = {649--656}
}
@article{Han:2009gs,
author = {Han, X and Wu, X and Chung, W Y and Li, T and Nekrutenko, A and Altman, N S and Chen, G and Ma, H},
title = {{Transcriptome of embryonic and neonatal mouse cortex by high-throughput RNA sequencing}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009},
volume = {106},
number = {31},
pages = {12741--12746},
month = aug
}
@article{Alexander:1974va,
author = {Alexander, RD},
title = {{The evolution of social behavior}},
journal = {Annual Review of Ecology and Systematics},
year = {1974},
volume = {5},
number = {1},
pages = {325--383}
}
@article{Quillery:2013beb,
author = {Quillery, E and Quenez, O and Peterlongo, P and Plantard, O},
title = {{Development of genomic resources for the tick Ixodes ricinus: isolation and characterization of single nucleotide polymorphisms}},
journal = {Molecular Ecology Resources},
year = {2013},
pages = {1--26},
month = oct
}
@article{GLADSTONE:1979wp,
author = {GLADSTONE, DE},
title = {{PROMISCUITY IN MONOGAMOUS COLONIAL BIRDS}},
journal = {The American Naturalist},
year = {1979},
volume = {114},
number = {4},
pages = {545--557}
}
@article{MHS:2011fn,
author = {MHS, Marie E Thoma PhD and MHS, Marie E Thoma PhD and MSc, Ronald H Gray MD and MSc, Ronald H Gray MD and PhD, Noah Kiwanuka MB ChB and PhD, Noah Kiwanuka MB ChB and BBLT, Simon Aluma SLT and BBLT, Simon Aluma SLT and PhD, Mei-Cheng Wang and PhD, Mei-Cheng Wang and MSc, Nelson Sewankambo MB ChB MMed and MSc, Nelson Sewankambo MB ChB MMed and MHS, Maria J Wawer MD and MHS, Maria J Wawer MD},
title = {{Longitudinal Changes in Vaginal Microbiota Composition Assessed by Gram Stain Among Never Sexually Active Pre- and Postmenarcheal Adolescents in Rakai, Uganda}},
journal = {Journal of Pediatric and Adolescent Gynecology},
year = {2011},
volume = {24},
number = {1},
pages = {42--47},
month = feb
}
@techreport{Leache:2007wf,
author = {Leache, Adam},
title = {{Leache Job app}},
year = {2007},
month = oct
}
@article{EBERHARD:1994wb,
author = {EBERHARD, WG},
title = {{EVIDENCE FOR WIDESPREAD COURTSHIP DURING COPULATION IN 131 SPECIES OF INSECTS AND SPIDERS, AND IMPLICATIONS FOR CRYPTIC FEMALE CHOICE}},
journal = {Evolution},
year = {1994},
volume = {48},
number = {3},
pages = {711--733}
}
@article{AliMurthy:2013fg,
author = {Ali-Murthy, Zehra and Lott, Susan E and Eisen, Michael B and Kornberg, Thomas B},
title = {{An Essential Role for Zygotic Expression in the Pre-Cellular \textit{Drosophila} Embryo}},
journal = {PLOS Genetics},
year = {2013},
volume = {9},
number = {4},
pages = {e1003428},
month = apr
}
@book{VonFrisch:1967tj,
author = {Von Frisch, K},
title = {{Dance language and orientation of the honey bee}},
publisher = {Harvard University Press},
year = {1967},
address = {Cambridge}
}
@article{Chen:2011hl,
author = {Chen, Dazhi and Chen, Dazhi and Li, Ping and Li, Ping and Guo, Wenhu and Guo, Wenhu and Ye, Fang and Ye, Fang and Wu, Jian and Wu, Jian and Wei, Damu and Wei, Damu and Guo, Zhiyun and Guo, Zhiyun and Ye, Chun and Ye, Chun},
title = {{Molecular evolution of candidate sour taste receptor gene PKD1L3 in mammals}},
journal = {Genome / National Research Council Canada = G{\'e}nome / Conseil national de recherches Canada},
year = {2011},
volume = {54},
number = {11},
pages = {890--897}
}
@article{Christe:2007kb,
journal = {Journal of Animal Ecology},
year = {2007},
volume = {76},
number = {4},
month = jul
}
@article{CluttonBrock:2008dq,
author = {Clutton-Brock, T H and Hodge, S J and Flower, T P},
title = {{Group size and the suppression of subordinate reproduction in Kalahari meerkats}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {3},
pages = {689--700},
month = sep
}
@article{Garvin:2011ea,
author = {Garvin, Michael R. and Garvin, Michael R. and Bielawski, Joseph P. and Bielawski, Joseph P. and Gharrett, Anthony J. and Gharrett, Anthony J.},
title = {{Positive Darwinian Selection in the Piston That Powers Proton Pumps in Complex I of the Mitochondria of Pacific Salmon}},
journal = {PLOS ONE},
year = {2011},
volume = {6},
number = {9}
}
@article{Gibbs:2003fi,
author = {Gibbs, AG and Gibbs, AG and Fukuzato, F and Fukuzato, F and Matzkin, LM and Matzkin, LM},
title = {{Evolution of water conservation mechanisms in \textit{Drosophila}}},
journal = {The Journal of experimental biology},
year = {2003},
volume = {206},
number = {7},
pages = {1183--1192}
}
@article{Frank:2011fo,
author = {Frank, S. A.},
title = {{Natural selection. III. Selection versus transmission and the levels of selection*}},
journal = {Journal of Evolutionary Biology},
year = {2011},
pages = {no--no},
month = dec
}
@article{DORAN:1954uq,
author = {DORAN, DJ},
title = {{A CATALOGUE OF THE PROTOZOA AND HELMINTHS OF NORTH AMERICAN RODENTS .1. PROTOZOA AND ACANTHOCEPHALA}},
journal = {American Midland Naturalist},
year = {1954},
volume = {52},
number = {1},
pages = {118--128}
}
@article{Webb:2008ha,
author = {Webb, Campbell O and Webb, Campbell O and Ackerly, David D and Ackerly, David D and Kembel, Steven W and Kembel, Steven W},
title = {{Phylocom: software for the analysis of phylogenetic community structure and trait evolution.}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {18},
pages = {2098--2100},
month = sep
}
@article{Snook:2009ks,
author = {Snook, Rhonda R and Br{\"u}stle, Lena and Slate, Jon},
title = {{A TEST AND REVIEW OF THE ROLE OF EFFECTIVE POPULATION SIZE ON EXPERIMENTAL SEXUAL SELECTION PATTERNS}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {7},
pages = {1923--1933},
month = jul
}
@article{Kalinowski:2010jr,
author = {Kalinowski, S T},
title = {{The computer program STRUCTURE does not reliably identify the main genetic clusters within species: simulations and implications for human population structure}},
journal = {Heredity},
year = {2010},
volume = {106},
number = {4},
pages = {625--632},
month = aug
}
@article{Boitard:2012jj,
author = {Boitard, S and Boitard, S and Schlotterer, C and Nolte, V and Nolte, V and Pandey, R V and Pandey, R V and Futschik, A},
title = {{Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples}},
journal = {Molecular Biology and Evolution},
year = {2012},
month = mar
}
@article{SCHWAGMEYER:1985wa,
author = {SCHWAGMEYER, PL and WOONTNER, SJ},
title = {{MATING COMPETITION IN AN ASOCIAL GROUND-SQUIRREL, SPERMOPHILUS-TRIDECEMLINEATUS}},
journal = {Behavioral Ecology and Sociobiology},
year = {1985},
volume = {17},
number = {3},
pages = {291--296}
}
@article{vanOs:1998uw,
author = {van Os, CH},
title = {{Role of aquaporins in renal water handling: physiology and pathophysiology.}},
journal = {Nephrology Dialysis Transplantation},
year = {1998},
annote = {AQP1 distri- bution in rat kidney where its distribution is in agree- ment with the high water permeabilities of the proximal tubule and the descending limb of Henle{\textquoteright}s loop
so should I expect low expression in desert adaptation? Low permeability? Or higher.. AQP1 knockout can't concentrate urine
high AQP2 (and AVP) for water retention (ref 25, 26)
Low expression if AQP3-4 (ref 58. 59) in desert adaptation
}
}
@article{GOMENDIO:1991wl,
author = {GOMENDIO, M and ROLDAN, ERS},
title = {{SPERM COMPETITION INFLUENCES SPERM SIZE IN MAMMALS}},
journal = {Proceedings of The Royal Society of London Series B-Biological Sciences},
year = {1991},
volume = {243},
number = {1308},
pages = {181--185}
}
@article{Bentley:2008eo,
author = {Bentley, David R and Balasubramanian, Shankar and Swerdlow, Harold P and Smith, Geoffrey P and Milton, John and Brown, Clive G and Hall, Kevin P and Evers, Dirk J and Barnes, Colin L and Bignell, Helen R and Boutell, Jonathan M and Bryant, Jason and Carter, Richard J and Keira Cheetham, R and Cox, Anthony J and Ellis, Darren J and Flatbush, Michael R and Gormley, Niall A and Humphray, Sean J and Irving, Leslie J and Karbelashvili, Mirian S and Kirk, Scott M and Li, Heng and Liu, Xiaohai and Maisinger, Klaus S and Murray, Lisa J and Obradovic, Bojan and Ost, Tobias and Parkinson, Michael L and Pratt, Mark R and Rasolonjatovo, Isabelle M J and Reed, Mark T and Rigatti, Roberto and Rodighiero, Chiara and Ross, Mark T and Sabot, andrea and Sankar, Subramanian V and Scally, Aylwyn and Schroth, Gary P and Smith, Mark E and Smith, Vincent P and Spiridou, Anastassia and Torrance, Peta E and Tzonev, Svilen S and Vermaas, Eric H and Walter, Klaudia and Wu, Xiaolin and Zhang, Lu and Alam, Mohammed D and Anastasi, Carole and Aniebo, Ify C and Bailey, David M D and Bancarz, Iain R and Banerjee, Saibal and Barbour, Selena G and Baybayan, Primo A and Benoit, Vincent A and Benson, Kevin F and Bevis, Claire and Black, Phillip J and Boodhun, Asha and Brennan, Joe S and Bridgham, John A and Brown, Rob C and Brown, andrew A and Buermann, Dale H and Bundu, Abass A and Burrows, James C and Carter, Nigel P and Castillo, Nestor and Chiara E Catenazzi, Maria and Chang, Simon and Neil Cooley, R and Crake, Natasha R and Dada, Olubunmi O and Diakoumakos, Konstantinos D and Dominguez-Fernandez, Belen and Earnshaw, David J and Egbujor, Ugonna C and Elmore, David W and Etchin, Sergey S and Ewan, Mark R and Fedurco, Milan and Fraser, Louise J and Fuentes Fajardo, Karin V and Scott Furey, W and George, David and Gietzen, Kimberley J and Goddard, Colin P and Golda, George S and Granieri, Philip A and Green, David E and Gustafson, David L and Hansen, Nancy F and Harnish, Kevin and Haudenschild, Christian D and Heyer, Narinder I and Hims, Matthew M and Ho, Johnny T and Horgan, Adrian M and Hoschler, Katya and Hurwitz, Steve and Ivanov, Denis V and Johnson, Maria Q and James, Terena and Huw Jones, T A and Kang, Gyoung-Dong and Kerelska, Tzvetana H and Kersey, Alan D and Khrebtukova, Irina and Kindwall, Alex P and Kingsbury, Zoya and Kokko-Gonzales, Paula I and Kumar, Anil and Laurent, Marc A and Lawley, Cynthia T and Lee, Sarah E and Lee, Xavier and Liao, Arnold K and Loch, Jennifer A and Lok, Mitch and Luo, Shujun and Mammen, Radhika M and Martin, John W and Mccauley, Patrick G and Mcnitt, Paul and Mehta, Parul and Moon, Keith W and Mullens, Joe W and Newington, Taksina and Ning, Zemin and Ling Ng, Bee and Novo, Sonia M and O'Neill, Michael J and Osborne, Mark A and Osnowski, andrew and Ostadan, Omead and Paraschos, Lambros L and Pickering, Lea and Pike, andrew C and Pike, Alger C and Chris Pinkard, D and Pliskin, Daniel P and Podhasky, Joe and Quijano, Victor J and Raczy, Come and Rae, Vicki H and Rawlings, Stephen R and Chiva Rodriguez, Ana and Roe, Phyllida M and Rogers, John and Rogert Bacigalupo, Maria C and Romanov, Nikolai and Romieu, Anthony and Roth, Rithy K and Rourke, Natalie J and Ruediger, Silke T and Rusman, Eli and Sanches-Kuiper, Raquel M and Schenker, Martin R and Seoane, Josefina M and Shaw, Richard J and Shiver, Mitch K and Short, Steven W and Sizto, Ning L and Sluis, Johannes P and Smith, Melanie A and Ernest Sohna Sohna, Jean and Spence, Eric J and Stevens, Kim and Sutton, Neil and Szajkowski, Lukasz and Tregidgo, Carolyn L and Turcatti, Gerardo and Vandevondele, Stephanie and Verhovsky, Yuli and Virk, Selene M and Wakelin, Suzanne and Walcott, Gregory C and Wang, Jingwen and Worsley, Graham J and Yan, Juying and Yau, Ling and Zuerlein, Mike and Rogers, Jane and Mullikin, James C and Hurles, Matthew E and Mccooke, Nick J and West, John S and Oaks, Frank L and Lundberg, Peter L and Klenerman, David and Durbin, Richard and Smith, Anthony J},
title = {{Accurate whole human genome sequencing using reversible terminator chemistry}},
journal = {Nature},
year = {2008},
volume = {456},
number = {7218},
pages = {53--59},
month = nov
}
@article{JUAN:1991tg,
author = {JUAN, C and PETITPIERRE, E},
title = {{Evolution of Genome Size in Darkling Beetles (Tenebrionidae, Coleoptera)}},
journal = {Genome / National Research Council Canada = G{\'e}nome / Conseil national de recherches Canada},
year = {1991},
volume = {34},
number = {1},
pages = {169--173}
}
@article{Lacey:2004kg,
author = {Lacey, EileenA},
title = {{Sociality reduces individual direct fitness in a communally breeding rodent, the colonial tuco-tuco (\textit{Ctenomys} \textit{sociabilis})}},
journal = {Behavioral Ecology and Sociobiology},
year = {2004},
volume = {56},
number = {5},
month = jun
}
@article{Meunier:2010dt,
author = {Meunier, Joel and Delaplace, Luma and Chapuisat, Michel},
title = {{Reproductive conflicts and egg discrimination in a socially polymorphic ant}},
journal = {Behavioral Ecology and Sociobiology},
year = {2010},
volume = {64},
number = {10},
pages = {1655--1663},
month = may
}
@article{Biron:2005ur,
author = {Biron, D G and Biron, D G and March{\'e}, L and March{\'e}, L and Ponton, F and Ponton, F and Loxdale, H D and Loxdale, H D and Gal{\'e}otti, N and Gal{\'e}otti, N and Renault, L and Renault, L and Joly, C and Joly, C and Thomas, F},
title = {{Behavioural manipulation in a grasshopper harbouring hairworm: a proteomics approach}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2005},
volume = {272},
number = {1577},
pages = {2117--2126}
}
@article{Cohas:2007jz,
author = {Cohas, A and Yoccoz, N G and Allaine, D},
title = {{Extra-pair paternity in alpine marmots, Marmota marmota: genetic quality and genetic diversity effects}},
journal = {Behavioral Ecology and Sociobiology},
year = {2007},
volume = {61},
number = {7},
pages = {1081--1092},
month = jan
}
@article{Weaver:1994wv,
author = {Weaver, D and Walker, L and Alcorn, D and Skinner, S},
title = {{The contributions of renin and vasopressin to the adaptation of the Australian spinifex hopping mouse (\textit{Notomys alexis}) to free water deprivation}},
journal = {Comp. Biochem. Physio.},
year = {1994},
volume = {108},
number = {1},
pages = {107--116}
}
@article{Simpson:2012ef,
author = {Simpson, Jared T and Durbin, Richard},
title = {{Efficient \textit{de novo} assembly of large genomes using compressed data structures.}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {3},
pages = {549--556},
month = mar
}
@article{Holland:1998ti,
author = {Holland, B and Holland, B and Rice, W R and Rice, W R},
title = {{Perspective: Chase-away sexual selection: Antagonistic seduction versus resistance}},
journal = {Evolution},
year = {1998},
volume = {52},
pages = {1--7},
month = feb
}
@article{Chen:2009dv,
author = {Chen, Xi and Li, Qibin and Wang, Jin and Guo, Xing and Jiang, Xiangrui and Ren, Zhiji and Weng, Chunyue and Sun, Guoxun and Wang, Xiuqiang and Liu, Yaping and Ma, Lijia and Chen, Jun-Yuan and Wang, Jun and Zen, Ke and Zhang, Junfeng and Zhang, Chen-Yu},
title = {{Identification and characterization of novel amphioxus microRNAs by Solexa sequencing}},
journal = {Genome Biology},
year = {2009},
volume = {10},
number = {7},
pages = {R78}
}
@article{Sharman:2004jb,
author = {Sharman, Greig and Ghorbel, Mohamed and Leroux, Marie and Beaucourt, Stephanie and Wong, Liang-Fong and Murphy, David},
title = {{Deciphering the mechanisms of homeostatic plasticity in the hypothalamo-neurohypophyseal system{\textemdash}genomic and gene transfer strategies}},
journal = {Progress in Biophysics and Molecular Biology},
year = {2004},
volume = {84},
number = {2-3},
pages = {151--182},
month = feb
}
@article{Zeh:2008jw,
author = {Zeh, Jeanne A and Zeh, David W},
title = {{Maternal inheritance, epigenetics and the evolution of polyandry}},
journal = {Genetica},
year = {2007},
volume = {134},
number = {1},
pages = {45--54},
month = aug
}
@article{Anonymous:GSBSRj8K,
title = {{Microbiol Mol Biol R 1997 Deitsch}},
year = {1997},
pages = {13},
month = aug
}
@article{Herrera:2012jw,
author = {Herrera, E A and Herrera, E A},
title = {{Ecological and genetic distribution of eusociality: the case for kin selection}},
journal = {Behavioral Ecology},
year = {2012},
month = oct
}
@article{Yang:2013fz,
author = {Yang, Zhenyu and Li, Zuojing and Bickel, David R},
title = {{Empirical Bayes estimation of posterior probabilities of enrichment: A comparative study of five estimators of the local false discovery rate}},
journal = {BMC Bioinformatics},
year = {2013},
volume = {14},
number = {1},
pages = {87}
}
@article{McNamara:2008ff,
author = {McNamara, Kathryn B and Elgar, Mark A and Jones, Theresa M},
title = {{Seminal compounds, female receptivity and fitness in the almond moth, \textit{Cadra cautella}}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {3},
pages = {771--777},
month = sep
}
@article{Stacey:2009ug,
author = {Stacey, Clovis A and Post, Diane M},
title = {{EFFECTS OF DISTURBANCE BY HUMANS ON SMALL MAMMALS IN A CHIHUAHUAN DESERT ECOSYSTEM}},
journal = {Southwestern Naturalist},
year = {2009},
volume = {54},
number = {3},
pages = {272--278}
}
@article{Brennan:2008ff,
author = {Brennan, Bernard J and Flaxman, Samuel M and Alonzo, Suzanne H},
title = {{Female alternative reproductive behaviors: The effect of female group size on mate assessment and copying}},
journal = {Journal of Theoretical Biology},
year = {2008},
volume = {253},
number = {3},
pages = {561--569},
month = aug
}
@article{Hodge:2007hk,
author = {Hodge, Sarah J},
title = {{Counting the costs: the evolution of male-biased care in the cooperatively breeding banded mongoose}},
journal = {Animal Behaviour},
year = {2007},
volume = {74},
number = {4},
pages = {911--919},
month = oct
}
@article{Chapman:2009js,
author = {Chapman, J R and Nakagawa, S and Coltman, D W and Slate, J and Sheldon, B C},
title = {{A quantitative review of heterozygosity-fitness correlations in animal populations}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {13},
pages = {2746--2765},
month = jul
}
@article{Nie:2006jf,
author = {Nie, L and Wu, G and Zhang, W},
title = {{Correlation of mRNA expression and protein abundance affected by multiple sequence features related to translational efficiency in Desulfovibrio vulgaris: a quantitative analysis.}},
journal = {Genetics},
year = {2006},
volume = {174},
number = {4},
pages = {2229--2243},
month = dec
}
@article{Cornuet:2008kx,
author = {Cornuet, J M and Santos, F and Beaumont, M A and Robert, C P and Marin, J M and Balding, D J and Guillemaud, T and Estoup, A},
title = {{Inferring population history with DIY ABC: a user-friendly approach to approximate Bayesian computation}},
journal = {Bioinformatics (Oxford, England)},
year = {2008},
volume = {24},
number = {23},
pages = {2713--2719},
month = nov
}
@article{CluttonBrock:1991ub,
author = {Clutton-Brock, TH and VINCENT, ACJ and VINCENT, ACJ},
title = {{Sexual Selection and the Potential Reproductive Rates of Males and Females}},
journal = {Nature},
year = {1991},
volume = {351},
number = {6321},
pages = {58--60}
}
@article{Burmeister:2005jw,
author = {Burmeister, Sabrina S and Jarvis, Erich D and Fernald, Russell D},
title = {{Rapid Behavioral and Genomic Responses to Social Opportunity}},
journal = {PLOS Biology},
year = {2005},
volume = {3},
number = {11},
pages = {e363}
}
@article{Tong:2013hea,
author = {Tong, Chaobo and Wang, Xiaowu and Yu, Jingyin and Wu, Jian and Li, Wanshun and Huang, Junyan and Dong, Caihua and Hua, Wei and Liu, Shengyi},
title = {{Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa}},
journal = {BMC Genomics},
year = {2013},
volume = {14},
number = {1},
pages = {689--22},
month = oct
}
@article{Hall:2008cy,
author = {Hall, Matthew D and Bussiere, Luc F and Hunt, John and Brooks, Robert},
title = {{EXPERIMENTAL EVIDENCE THAT SEXUAL CONFLICT INFLUENCES THE OPPORTUNITY, FORM AND INTENSITY OF SEXUAL SELECTION}},
journal = {Evolution},
year = {2008},
volume = {62},
number = {9},
pages = {2305--2315},
month = sep
}
@article{Gouy:2009ud,
author = {Gouy, manolo},
title = {{SeaViewLetter4HideChanges}},
year = {2009},
pages = {1--14},
month = oct
}
@article{Piry:1999vj,
author = {Piry, S and Piry, S and Luikart, G and Cornuet, JM},
title = {{BOTTLENECK: A computer program for detecting recent reductions in the effective population size using allele frequency data}},
journal = {Journal of Heredity},
year = {1999},
volume = {90},
number = {4},
pages = {502--503}
}
@article{Fricke:2007kx,
author = {Fricke, Claudia and Arnqvist, Goran},
title = {{RAPID ADAPTATION TO A NOVEL HOST IN A SEED BEETLE ( CALLOSOBRUCHUS MACULATUS): THE ROLE OF SEXUAL SELECTION}},
journal = {Evolution},
year = {2007},
volume = {61},
number = {2},
pages = {440--454},
month = feb
}
@article{Bertram:2009fh,
author = {Bertram, Susan M and Gorelick, Root},
title = {{Quantifying and comparing mating systems using normalized mutual entropy}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {1},
pages = {201--206},
month = jan
}
@article{Moller:1998ue,
author = {Moller, AP and Sorci, G and Sorci, G and Erritzoe, J and Erritzoe, J},
title = {{Sexual dimorphism in immune defense}},
journal = {The American Naturalist},
year = {1998},
volume = {152},
number = {4},
pages = {605--619}
}
@article{Ward:2000vc,
author = {Ward, PI},
title = {{Cryptic female choice in the yellow dung fly Scathophaga stercoraria (L.)}},
journal = {Evolution},
year = {2000},
volume = {54},
number = {5},
pages = {1680--1686}
}
@article{Cutrera:2005ha,
author = {Cutrera, A P and Lacey, E A and Busch, C},
title = {{Genetic structure in a solitary rodent (\textit{Ctenomys} talarum): implications for kinship and dispersal}},
journal = {Molecular Ecology},
year = {2005},
volume = {14},
number = {8},
pages = {2511--2523},
month = jul
}
@article{Solomon:2009gj,
author = {Solomon, N G and Richmond, A R and Harding, P A and Fries, A and Jacquemin, S and Schaefer, R L and Lucia, K E and Keane, B},
title = {{Polymorphism at the avpr1alocus in male prairie voles correlated with genetic but not social monogamy in field populations}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {22},
pages = {4680--4695},
month = nov
}
@article{Telugu:2009gu,
author = {Telugu, Bhanu and Walker, Angela M and Green, Jonathan A},
title = {{Characterization of the bovine pregnancy-associated glycoprotein gene family {\textendash} analysis of gene sequences, regulatory regions within the promoter and expression of selected genes}},
journal = {BMC Genomics},
year = {2009},
volume = {10},
number = {1},
pages = {185}
}
@article{Levin:2010cz,
author = {Levin, Tera C and Glazer, andrew M and Pachter, Lior and Brem, Rachel B and Eisen, Michael B},
title = {{Exploring the Genetic Basis of Variation in Gene Predictions with a Synthetic Association Study}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {7},
pages = {e11645},
month = jul
}
@article{Jetz:2012fk,
author = {Jetz, W and Thomas, G H and Joy, J B and Hartmann, K and Mooers, A O},
title = {{The global diversity of birds in space and time}},
journal = {Nature},
year = {2012},
volume = {491},
number = {7424},
pages = {444--448},
month = oct
}
@article{Philipp:2012gm,
author = {Philipp, Eva E R and Philipp, Eva E R and Kraemer, Lars and Kraemer, Lars and Melzner, Frank and Melzner, Frank and Poustka, Albert J and Thieme, Sebastian and Thieme, Sebastian and Findeisen, Ulrike and Findeisen, Ulrike and Schreiber, Stefan and Rosenstiel, Philip and Rosenstiel, Philip},
title = {{Massively Parallel RNA Sequencing Identifies a Complex Immune Gene Repertoire in the lophotrochozoan Mytilus edulis}},
journal = {PLOS ONE},
year = {2012},
volume = {7},
number = {3},
pages = {e33091},
month = mar
}
@article{Suerbaum:2002ex,
author = {Suerbaum, Sebastian and Suerbaum, Sebastian and Michetti, Pierre and Michetti, Pierre},
title = {{Helicobacter pylori infection.}},
journal = {The New England journal of medicine},
year = {2002},
volume = {347},
number = {15},
pages = {1175--1186},
month = oct
}
@article{Kruuk:1999gl,
author = {Kruuk, L E B and Clutton-Brock, T H and Rose, K E and Guinness, F E},
title = {{Early determinants of lifetime reproductive success differ between the sexes in red deer}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {1999},
volume = {266},
number = {1429},
pages = {1655--1661},
month = aug
}
@techreport{Fariello:2013hb,
author = {Fariello, M I and Servin, B and Tosser-Klopp, G and Rupp, R and Moreno, C and San Cristobal, M and boitard, s},
title = {{Selection signatures in worldwide Sheep populations}},
year = {2013},
month = dec
}
@article{Moses:2011jb,
author = {Moses, Martin R and Moses, Martin R and Frey, Jennifer K and Roemer, Gary W and Roemer, Gary W},
title = {{Elevated surface temperature depresses survival of banner-tailed kangaroo rats: will climate change cook a desert icon?}},
journal = {Oecologia},
year = {2011},
month = jul
}
@article{Mardis:2011cr,
author = {Mardis, Elaine R},
title = {{A decade{\textquoteright}s perspective on DNA sequencing technology}},
journal = {Nature},
year = {2011},
volume = {470},
number = {7333},
pages = {198--203},
month = feb
}
@article{Byrne:2008gr,
author = {Byrne, Phillip G and Whiting, Martin J},
title = {{Simultaneous polyandry increases fertilization success in an African foam-nesting treefrog}},
journal = {Animal Behaviour},
year = {2008},
volume = {76},
number = {4},
pages = {1157--1164},
month = oct
}
@book{Alcock:1975uo,
author = {Alcock, J},
title = {{Animal Behavior: An Evolutionary Approach}},
publisher = {Sinauer Associates},
year = {1975},
address = {Sunderland},
edition = {1st},
month = may
}
@article{Bateman:2009ge,
author = {Bateman, A and Quackenbush, J},
title = {{Editorial}},
journal = {Bioinformatics (Oxford, England)},
year = {2009},
volume = {25},
number = {4},
pages = {429--429},
month = feb
}
@article{Colautti:2013ew,
author = {Colautti, R I and Barrett, S C H},
title = {{Rapid Adaptation to Climate Facilitates Range Expansion of an Invasive Plant}},
journal = {Science (New York, NY)},
year = {2013},
volume = {342},
number = {6156},
pages = {364--366},
month = oct
}
@article{SHELDON:2000ww,
author = {SHELDON, BC},
title = {{Differential allocation: tests, mechanisms and implications}},
journal = {Trends In Ecology {\&} Evolution},
year = {2000},
volume = {15},
number = {10},
pages = {397--402}
}
@article{Williams:2012de,
author = {Williams, L J S and Williams, L J S and Tabbaa, D G and Tabbaa, D G and Li, N and Li, N and Berlin, A M and Berlin, A M and Shea, T P and Shea, T P and Maccallum, I and Maccallum, I and Lawrence, M S and Lawrence, M S and Drier, Y and Drier, Y and Getz, G and Getz, G and Young, S K and Young, S K and Jaffe, D B and Jaffe, D B and Nusbaum, C and Nusbaum, C and Gnirke, A and Gnirke, A},
title = {{Paired-end sequencing of Fosmid libraries by Illumina}},
journal = {Genome Research},
year = {2012},
volume = {22},
number = {11},
pages = {2241--2249},
month = nov
}
@article{Donders:2000tk,
author = {Donders, GGG and Donders, GGG and Bosmans, E and Bosmans, E and Dekeersmaecker, A and Dekeersmaecker, A and Vereecken, A and Vereecken, A and van Bulck, B and van Bulck, B and Spitz, B and Spitz, B},
title = {{Pathogenesis of abnormal vaginal bacterial flora}},
journal = {American Journal of Obstetrics and Gynecology},
year = {2000},
volume = {182},
number = {4},
pages = {872--878}
}
@article{Kaissling:1975uu,
author = {Kaissling, B and De Rouffignac, C and Barrett, J M and Kriz, W},
title = {{The structural organization of the kidney of the desert rodent Psammomys obesus.}},
journal = {Anatomy and embryology},
year = {1975},
volume = {148},
number = {2},
pages = {121--143},
month = dec
}
@article{Jasny:2008tw,
author = {Jasny, Barbara R and Kelner, Katrina L and Pennisi, Elizabeth},
title = {{From Genes to Social Behavior Introduction}},
journal = {Science (New York, NY)},
year = {2008},
volume = {322},
number = {5903},
pages = {891--891}
}
@article{Velando:2006kr,
author = {Velando, A and Drummond, H and Torres, R},
title = {{Senescent birds redouble reproductive effort when ill: confirmation of the terminal investment hypothesis}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1593},
pages = {1443--1448},
month = jun
}
@article{EyreWalker:2002tf,
author = {Eyre-Walker, A},
title = {{Changing effective population size and the McDonald-Kreitman test}},
journal = {Genetics},
year = {2002},
volume = {162},
number = {4},
pages = {2017--2024}
}
@article{Salemi:1998vv,
author = {Salemi, M and Vandamme, AM and Gradozzi, C and van Laethem, K and Cattaneo, E and Taylor, G and Casoli, C and Goubau, P and Desmyter, J and Bertazzoni, U},
title = {{Evolutionary rate and genetic heterogeneity of human T-cell lymphotropic virus type II (HTLV-II) using isolates from European injecting drug users}},
journal = {Journal of Molecular Evolution},
year = {1998},
volume = {46},
number = {5},
pages = {602--611}
}
@article{Nielsen:2007tc,
author = {Nielsen, Charlotte L Roy and Nielsen, Clayton K},
title = {{Multiple paternity and relatedness in southern Illinois raccoons (Procyon lotor)}},
journal = {Journal of Mammalogy},
year = {2007},
volume = {88},
number = {2},
pages = {441--447}
}
@article{Graham:2012dc,
author = {Graham, Allie M and Graham, Allie M and Merrill, Jennifer D and Merrill, Jennifer D and McGaugh, Suzanne E and McGaugh, Suzanne E and Noor, Mohamed A F},
title = {{Geographic Selection in the Small Heat Shock Gene Complex Differentiating Populations of \textit{Drosophila} \textit{pseudoobscura}.}},
journal = {Journal of Heredity},
year = {2012},
volume = {103},
number = {3},
pages = {400--407},
month = apr
}
@article{Ophir:2007tk,
author = {Ophir, Alexander G and Phelps, Steven M and Sorin, Anna Bess and Wolff, Jerry O},
title = {{Morphological, genetic and behavioral comparisons of two prairie vole populations in the field and laboratory}},
journal = {Journal of Mammalogy},
year = {2007},
volume = {88},
number = {4},
pages = {989--999}
}
@article{Lozupone:2007kg,
author = {Lozupone, Catherine A. and Lozupone, Catherine A. and Hamady, Micah and Kelley, Scott T. and Kelley, Scott T. and Knight, Rob},
title = {{Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities}},
journal = {Applied and Environmental Microbiology},
year = {2007},
volume = {73},
number = {5},
pages = {1576--1585}
}
@article{Carroll:2001tk,
author = {Carroll, SB and Carroll, SB},
title = {{Chance and necessity: the evolution of morphological complexity and diversity}},
journal = {Nature},
year = {2001},
volume = {409},
number = {6823},
pages = {1102--1109}
}
@article{Mullen:2009cv,
author = {Mullen, Lynne M and Vignieri, Sacha N and Gore, Jeffery A and Gore, Jeffery A and Hoekstra, Hopi E},
title = {{Adaptive basis of geographic variation: genetic, phenotypic and environmental differences among beach mouse populations.}},
journal = {Proceedings Biological sciences / The Royal Society},
year = {2009},
volume = {276},
number = {1674},
pages = {3809--3818},
month = nov
}
@article{Linnen:2009jp,
author = {Linnen, Catherine R and Linnen, Catherine R and Kingsley, Evan P and Kingsley, Evan P and Jensen, Jeffrey D and Hoekstra, Hopi E},
title = {{On the origin and spread of an adaptive allele in deer mice.}},
journal = {Science (New York, NY)},
year = {2009},
volume = {325},
number = {5944},
pages = {1095--1098},
month = aug
}
@article{Davidson:2011iu,
author = {Davidson, Beverly L and McCray, Paul B},
title = {{Current prospects for RNA interference-based therapies.}},
journal = {Nature Reviews Genetics},
year = {2011},
volume = {12},
number = {5},
pages = {329--340},
month = may
}
@article{SenSarma:2010iv,
author = {Sen Sarma, M and Sen Sarma, M and Rodriguez-Zas, S L and Rodriguez-Zas, S L and Gernat, T and Gernat, T and Nguyen, T and Newman, T and Newman, T and Robinson, G E},
title = {{Distance-responsive genes found in dancing honey bees.}},
journal = {Genes, Brain and Behavior},
year = {2010},
volume = {9},
number = {7},
pages = {825--830},
month = oct
}
@article{Krogh:2001bv,
author = {Krogh, A and Krogh, A and Larsson, B and Larsson, B and von Heijne, G and von Heijne, G and Sonnhammer, E L and Sonnhammer, E L},
title = {{Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.}},
journal = {Journal of molecular biology},
year = {2001},
volume = {305},
number = {3},
pages = {567--580},
month = jan
}
@article{Eaton:2001kw,
author = {Eaton, T J and Gasson, M J},
title = {{Molecular Screening of Enterococcus Virulence Determinants and Potential for Genetic Exchange between Food and Medical Isolates}},
journal = {Applied and Environmental Microbiology},
year = {2001},
volume = {67},
number = {4},
pages = {1628--1635},
month = apr
}
@article{Hoffman:2009dj,
author = {Hoffman, J I and Dasmahapatra, K K and Amos, W and Phillips, C D and Gelatt, T S and Bickham, J W},
title = {{Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {14},
pages = {2961--2978},
month = jul
}
@article{Muller:2009ke,
author = {Muller, Ludo A H and Mccusker, John H},
title = {{Microsatellite analysis of genetic diversity among clinical and nonclinical Saccharomyces cerevisiaeisolates suggests heterozygote advantage in clinical environments}},
journal = {Molecular Ecology},
year = {2009},
volume = {18},
number = {13},
pages = {2779--2786},
month = jul
}
@article{Griebel:2012ti,
author = {Griebel, Thasso and Griebel, Thasso and Zacher, Benedikt and Zacher, Benedikt and Ribeca, Paolo and Ribeca, Paolo and Raineri, Emanuele and Raineri, Emanuele and Lacroix, Vincent and Lacroix, Vincent and Guigo, Roderic and Sammeth, Michael},
title = {{Modelling and simulating generic RNA-Seq experiments with the flux simulator.}},
journal = {Nucleic Acids Research},
year = {2012},
volume = {40},
number = {20},
pages = {10073--10083},
month = nov
}
@article{Ceballos:2009ui,
author = {Ceballos, G and Ehrlich, P},
title = {{Discoveries of new mammal species and their implications for conservation and ecosystem services}},
journal = {Proceedings of the National Academy of Sciences},
year = {2009}
}
@article{Anan:2006em,
author = {Anan, K and Anan, K and Yoshida, N and Yoshida, N and Kataoka, Y and Kataoka, Y and Sato, M and Sato, M and Ichise, H and Ichise, H and Nasu, M and Nasu, M and Ueda, S and Ueda, S},
title = {{Morphological Change Caused by Loss of the Taxon-Specific Polyalanine Tract in Hoxd-13}},
journal = {Molecular Biology and Evolution},
year = {2006},
volume = {24},
number = {1},
pages = {281--287},
month = oct
}
@article{Hattori:2009hh,
author = {Hattori, M and Taylor, T D},
title = {{The Human Intestinal Microbiome: A New Frontier of Human Biology}},
journal = {DNA Research},
year = {2009},
volume = {16},
number = {1},
pages = {1--12},
month = jan
}
@article{Sobrinho:2010ey,
author = {Sobrinho, Iderval S and de Brito, Reinaldo A},
title = {{Evidence for positive selection in the gene fruitless in Anastrepha fruit flies.}},
journal = {BMC Evolutionary Biology},
year = {2010},
volume = {10},
number = {1},
pages = {293}
}
@article{Cornuet:1996vp,
author = {Cornuet, JM and Luikart, G},
title = {{Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data}},
journal = {Genetics},
year = {1996},
volume = {144},
number = {4},
pages = {2001--2014}
}
@article{Schmoll:2009kn,
author = {Schmoll, T and Schurr, F M and Winkel, W and Epplen, J T and Lubjuhn, T},
title = {{Lifespan, lifetime reproductive performance and paternity loss of within-pair and extra-pair offspring in the coal tit Periparus ater}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2009},
volume = {276},
number = {1655},
pages = {337--345},
month = jan
}
@article{Chiba:2003uh,
author = {Chiba, A and Nakamura, M},
title = {{Anatomical and histophysiological characterization of the male cloacal protuberance of the polygynandrous Alpine Accentor Prunella collaris}},
journal = {Ibis},
year = {2003},
volume = {145},
number = {2},
pages = {E83--E93}
}
@article{Kita:2012hg,
author = {Kita, Yuki F and Kita, Yuki F and ando, Asako and ando, Asako and Tanaka, Keiko and Tanaka, Keiko and Suzuki, Shingo and Suzuki, Shingo and Ozaki, Yuki and Ozaki, Yuki and Uenishi, Hirohide and Uenishi, Hirohide and Inoko, Hidetoshi and Kulski, Jerzy K and Shiina, Takashi},
title = {{Application of high-resolution, massively parallel pyrosequencing for estimation of haplotypes and gene expression levels of swine leukocyte antigen (SLA) class I genes.}},
journal = {Immunogenetics},
year = {2012},
volume = {64},
number = {3},
pages = {187--199},
month = mar
}
@article{Lopes:2011ky,
author = {Lopes, Fabr{\'\i}cio M and Lopes, Fabr{\'\i}cio M and Cesar, Roberto M and Cesar, Roberto M and Costa, Luciano Da F and Costa, Luciano Da F},
title = {{Gene expression complex networks: synthesis, identification, and analysis.}},
journal = {Journal of computational biology : a journal of computational molecular cell biology},
year = {2011},
volume = {18},
number = {10},
pages = {1353--1367},
month = oct
}
@article{SCHWAGMEYER:1994uf,
author = {SCHWAGMEYER, PL and Parker, GA},
title = {{MATE-QUITTING RULES FOR MALE THIRTEEN-LINED GROUND-SQUIRRELS}},
journal = {Behavioral Ecology},
year = {1994},
volume = {5},
number = {2},
pages = {142--150}
}
@article{Gosden:2009ei,
author = {Gosden, Thomas P and Svensson, Erik I},
title = {{Density-Dependent Male Mating Harassment, Female Resistance, and Male Mimicry}},
journal = {The American Naturalist},
year = {2009},
volume = {173},
number = {6},
pages = {709--721},
month = jun
}
@article{Levy:2012iw,
author = {Levy, ofir and Dayan, Tamar and Rotics, Shay and Kronfeld-Schor, Noga},
title = {{Foraging sequence, energy intake and torpor: an individual-based field study of energy balancing in desert golden spiny mice}},
journal = {Ecology Letters},
year = {2012},
pages = {n/a--n/a},
month = aug
}
@article{Orlando:2009jf,
author = {Orlando, L and Metcalf, J L and Alberdi, M T and Telles-Antunes, M and Bonjean, D and Otte, M and Martin, F and Eisenmann, V and Mashkour, M and Morello, F and Prado, J L and Salas-Gismondi, R and Shockey, B J and Wrinn, P J and Vasil'ev, S K and Ovodov, N D and Cherry, M I and Hopwood, B and Male, D and Austin, J J and Hanni, C and Cooper, A},
title = {{Revising the recent evolutionary history of equids using ancient DNA}},
journal = {PNAS},
year = {2009},
volume = {106},
number = {51},
pages = {21754--21759},
month = dec
}
@article{delValle:2008iv,
author = {del Valle, Juana C and Lopez Mananes, Alejandra A},
title = {{Digestive strategies in the South American subterranean rodent \textit{Ctenomys} talarum}},
journal = {Comparative biochemistry and physiology Part A, Molecular {\&} integrative physiology},
year = {2008},
volume = {150},
number = {4},
pages = {387--394},
month = aug
}
@article{Young:2010ch,
author = {Young, andrew L and Young, andrew L and Abaan, Hatice Ozel and Abaan, Hatice Ozel and Zerbino, Daniel and Zerbino, Daniel and Mullikin, James C and Birney, Ewan and Margulies, Elliott H},
title = {{A new strategy for genome assembly using short sequence reads and reduced representation libraries}},
journal = {Genome Research},
volume = {20},
pages = {249--256}
}
@article{vanTassell:2008iv,
author = {van Tassell, Curtis P and Smith, Timothy P L and Matukumalli, Lakshmi K and Taylor, Jeremy F and Schnabel, Robert D and Lawley, Cynthia Taylor and Haudenschild, Christian D and Moore, Stephen S and Warren, Wesley C and Sonstegard, Tad S},
title = {{SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries}},
journal = {Nature Methods},
year = {2008},
volume = {5},
number = {3},
pages = {247--252},
month = feb
}
@article{Haasl:2013bb,
author = {Haasl, R J and Payseur, B A},
title = {{Microsatellites as Targets of Natural Selection}},
journal = {Molecular Biology and Evolution},
year = {2013},
volume = {30},
number = {2},
pages = {285--298},
month = jan
}
@article{BradshawJr:2005cva,
author = {Bradshaw Jr, H D},
title = {{Mutations in CAX1 produce phenotypes characteristic of plants tolerant to serpentine soils}},
journal = {New Phytologist},
year = {2005},
volume = {167},
number = {1},
pages = {81--88},
month = mar
}
@article{Wan:2006wl,
author = {Wan, Qiu-Hong and Zhu, Liang and Wu, Hua and Fang, Sheng-Guo},
title = {{Major histocompatibility complex class II variation in the giant panda (Ailuropoda melanoleuca)}},
journal = {Molecular Ecology},
year = {2006},
volume = {15},
number = {9},
pages = {2441--2450}
}
@article{MacManes:2011ci,
author = {MacManes, Matthew David},
title = {{Promiscuity in mice is associated with increased vaginal bacterial diversity.}},
journal = {Die Naturwissenschaften},
year = {2011},
volume = {98},
number = {11},
pages = {951--960},
month = nov
}
@article{Wade:2010dw,
author = {Wade, M J and Shuster, S M},
title = {{Bateman (1948): pioneer in the measurement of sexual selection}},
journal = {Heredity},
year = {2010},
volume = {105},
number = {6},
pages = {507--508},
month = feb
}
@article{Montrose:2004hb,
author = {Montrose, V T and Harris, W E and Moore, P J},
title = {{Sexual conflict and cooperation under naturally occurring male enforced monogamy}},
journal = {Journal of Evolutionary Biology},
year = {2003},
volume = {17},
number = {2},
pages = {443--452},
month = dec
}
@article{Shifferman:2012gg,
author = {Shifferman, E M},
title = {{It's all in your head: the role of quantity estimation in sperm competition}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2012},
volume = {279},
number = {1730},
pages = {833--840},
month = jan
}
@article{Veal:1979vp,
author = {Veal, R and Caire, W},
title = {{\textit{Peromyscus} \textit{eremicus}}},
journal = {Mammalian Species},
year = {1979},
pages = {1--6}
}
@article{Adamo:2009jm,
author = {Adamo, Shelley A and Spiteri, Raymond J},
title = {{He's healthy, but will he survive the plague? Possible constraints on mate choice for disease resistance}},
journal = {Animal Behaviour},
year = {2009},
volume = {77},
number = {1},
pages = {67--78},
month = jan
}
@article{Benkman:1999ug,
author = {Benkman, CW},
title = {{The selection mosaic and diversifying coevolution between crossbills and lodgepole pine}},
journal = {The American Naturalist},
year = {1999},
volume = {153},
pages = {S75--S91}
}
@article{Whitlock:2009fe,
author = {Whitlock, Michael C and Agrawal, Aneil F},
title = {{PURGING THE GENOME WITH SEXUAL SELECTION: REDUCING MUTATION LOAD THROUGH SELECTION ON MALES}},
journal = {Evolution},
year = {2009},
volume = {63},
number = {3},
pages = {569--582},
month = mar
}
@article{Ferretti:2010fda,
author = {Ferretti, L and Perez-Enciso, M and Ramos-Onsins, S},
title = {{Optimal Neutrality Tests Based on the Frequency Spectrum}},
journal = {Genetics},
year = {2010},
volume = {186},
number = {1},
pages = {353--365},
month = sep
}
@article{Perrin:2003va,
author = {Perrin, WF and Mesnick, SL},
title = {{Sexual ecology of the spinner dolphin, Stenella longirostris: Geographic variation in mating system}},
journal = {Marine Mammal Science},
year = {2003},
volume = {19},
number = {3},
pages = {462--483}
}
@article{Milano:2013fv,
author = {Milano, Ilaria and Babbucci, Massimiliano and Cariani, Alessia and Atanassova, Miroslava and Bekkevold, Dorte and Carvalho, Gary R and Espi{\~n}eira, Montserrat and Fiorentino, Fabio and Garofalo, Germana and Geffen, Audrey J and Hansen, Jakob H and Helyar, Sarah J and Nielsen, Einar E and Ogden, Rob and Patarnello, Tomaso and Stagioni, Marco and {FishPopTrace Consortium} and Tinti, Fausto and Bargelloni, Luca},
title = {{Outlier SNP markers reveal fine-scale genetic structuring across European hake populations ( Merluccius merluccius)}},
journal = {Molecular Ecology},
year = {2013},
pages = {n/a--n/a},
month = nov
}
@article{Panhuis:2011co,
author = {Panhuis, Tami M. and Panhuis, Tami M. and Broitman-Maduro, Gina and Broitman-Maduro, Gina and Uhrig, Jarrod and Uhrig, Jarrod and Maduro, Morris and Maduro, Morris and Reznick, David N. and Reznick, David N.},
title = {{Analysis of Expressed Sequence Tags from the Placenta of the Live-Bearing Fish Poeciliopsis (Poeciliidae)}},
journal = {Journal of Heredity},
year = {2011},
volume = {102},
number = {3},
pages = {352--361}
}
@article{Buchwitz:2012jy,
author = {Buchwitz, B J and Buchwitz, B J and Beyer, C H and Beyer, C H and Peterson, J E and Peterson, J E and Pitre, E and Pitre, E and Lalic, N and Lalic, N and Sampson, P D and Sampson, P D and Wakimoto, B T},
title = {{Facilitating Long-Term Changes in Student Approaches to Learning Science}},
journal = {Cell Biology Education},
year = {2012},
volume = {11},
number = {3},
pages = {273--282},
month = sep
}
@article{Husak:2008dy,
author = {HUSAK, J and MOORE, I},
title = {{Stress hormones and mate choice}},
journal = {Trends In Ecology {\&} Evolution},
year = {2008},
volume = {23},
number = {10},
pages = {532--534},
month = oct
}
@article{Whittingham:1997uw,
author = {Whittingham, LA and Dunn, PO and Magrath, RD},
title = {{Relatedness, polyandry and extra-group paternity in the cooperatively-breeding white-browed scrubwren (Sericornis frontalis)}},
journal = {Behavioral Ecology and Sociobiology},
year = {1997},
volume = {40},
number = {4},
pages = {261--270}
}
@article{VanBERS:2012eo,
author = {Van BERS, NIKKIE E M and Santure, Anna W and van Oers, Kees and DE CAUWER, ISABELLE and Dibbits, Bert W and MATEMAN, CHRISTA and Crooijmans, Richard P M A and Sheldon, Ben C and Visser, Marcel E and Groenen, Martien A M and Slate, Jon},
title = {{The design and cross-population application of a genome-wide SNP chip for the great tit Parus major}},
journal = {Molecular Ecology Resources},
year = {2012},
volume = {12},
number = {4},
pages = {753--770},
month = apr
}
@article{EWENS:1972ub,
author = {EWENS, WJ and EWENS, WJ},
title = {{Sampling Theory of Selectively Neutral Alleles}},
journal = {Theoretical Population Biology},
year = {1972},
volume = {3},
number = {1},
pages = {87--{\&}}
}
@article{Scally:2012fe,
author = {Scally, Aylwyn and Durbin, Richard},
title = {{Revising the human mutation rate: implications for understanding human evolution}},
journal = {Nature Reviews Genetics},
year = {2012},
volume = {13},
number = {10},
pages = {745--753},
month = sep
}
@article{Hay:2008hk,
author = {Hay, Jennifer M and Subramanian, Sankar and Millar, Craig D and Mohandesan, Elmira and Lambert, David M},
title = {{Rapid molecular evolution in a living fossil}},
journal = {Trends In Genetics},
year = {2008},
volume = {24},
number = {3},
pages = {106--109},
month = mar
}
@article{Lavner:2005id,
author = {Lavner, Yizhar and Kotlar, Daniel},
title = {{Codon bias as a factor in regulating expression via translation rate in the human genome}},
journal = {Gene},
year = {2005},
volume = {345},
number = {1},
pages = {127--138},
month = jan
}
@article{Hoffmeister:1981tm,
author = {Hoffmeister, DF and Hoffmeister, DF},
title = {{\textit{Peromyscus} truei}},
journal = {Mammalian Species},
year = {1981},
pages = {1--5}
}
@article{Martin:2003tm,
author = {Martin, OY and Martin, OY and Hosken, DJ},
title = {{Costs and benefits of evolving under experimentally enforced polyandry or monogamy}},
journal = {Evolution},
year = {2003},
volume = {57},
number = {12},
pages = {2765--2772}
}
@article{Rothman:1998tf,
author = {Rothman, Lome D and Roland, Jens},
title = {{Forest fragmentation and colony performance of forest tent caterpillar}},
journal = {Ecography},
year = {1998},
volume = {21},
number = {4},
pages = {383--391}
}
@article{Charlesworth:2009jz,
author = {Charlesworth, Brian},
title = {{Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation}},
journal = {Nature Reviews Genetics},
year = {2009},
volume = {10},
number = {3},
pages = {195--205},
month = mar
}
@article{Boots:2002kk,
author = {Boots, M and Knell, R J},
title = {{The evolution of risky behaviour in the presence of a sexually transmitted disease}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2002},
volume = {269},
number = {1491},
pages = {585--589},
month = mar
}
@article{Mcgregor:2007dha,
journal = {Journal of Applied Ecology},
year = {2008},
volume = {0},
number = {0},
month = mar
}
@article{Booth:2007jn,
author = {Booth, W and Montgomery, W I and Prod{\"o}hl, P A},
title = {{Polyandry by wood mice in natural populations}},
journal = {Journal of Zoology},
year = {2007},
volume = {273},
number = {2},
pages = {176--182},
month = oct
}
@article{Sefc:2009fn,
author = {Sefc, K M and Koblmuller, S},
title = {{Assessing Parent Numbers from offspring Genotypes: The Importance of Marker Polymorphism}},
journal = {Journal of Heredity},
year = {2009},
volume = {100},
number = {2},
pages = {197--205},
month = feb
}
@article{Fu:2012hh,
author = {Fu, Jingyuan and Fu, Jingyuan and Wolfs, Marcel G M and Wolfs, Marcel G M and Deelen, Patrick and Deelen, Patrick and Westra, Harm-Jan and Westra, Harm-Jan and Fehrmann, Rudolf S N and Fehrmann, Rudolf S N and te Meerman, Gerard J and te Meerman, Gerard J and Buurman, Wim A and Buurman, Wim A and Rensen, Sander S M and Rensen, Sander S M and Groen, Harry J M and Groen, Harry J M and Weersma, Rinse K and Weersma, Rinse K and van den Berg, Leonard H and van den Berg, Leonard H and Veldink, Jan and Veldink, Jan and Ophoff, Roel A and Ophoff, Roel A and Snieder, Harold and Snieder, Harold and van Heel, David and van Heel, David and Jansen, Ritsert C and Jansen, Ritsert C and Hofker, Marten H and Hofker, Marten H and Wijmenga, Cisca and Wijmenga, Cisca and Franke, Lude and Franke, Lude},
title = {{Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression}},
journal = {PLOS Genetics},
year = {2012},
volume = {8},
number = {1},
pages = {e1002431},
month = jan
}
@article{Otter:1998uj,
author = {Otter, K and Ratcliffe, L and Michaud, D and Boag, PT},
title = {{Do female black-capped chickadees prefer high-ranking males as extra-pair partners?}},
journal = {Behavioral Ecology and Sociobiology},
year = {1998},
volume = {43},
number = {1},
pages = {25--36}
}
@article{Sivasundar:2010cb,
author = {Sivasundar, A and Palumbi, S R},
title = {{Parallel amino acid replacements in the rhodopsins of the rockfishes (Sebastes spp.) associated with shifts in habitat depth}},
journal = {Journal of Evolutionary Biology},
year = {2010},
volume = {23},
number = {6},
pages = {1159--1169},
month = may
}
@article{Degner:2012fo,
author = {Degner, Jacob F and Pai, Athma A and Pique-Regi, Roger and Pique-Regi, Roger and Veyrieras, Jean-Baptiste and Gaffney, Daniel J. and Gaffney, Daniel J. and Pickrell, Joseph K and De Leon, Sherryl and De Leon, Sherryl and Michelini, Katelyn and Michelini, Katelyn and Lewellen, Noah and Lewellen, Noah and Crawford, Gregory E. and Stephens, Matthew and Gilad, Yoav and Pritchard, Jonathan K},
title = {{DNase I sensitivity QTLs are a major determinant of human expression variation}},
journal = {Nature},
year = {2012},
volume = {482},
number = {7385},
pages = {390--394}
}
@article{Bussiere:2006th,
author = {Bussiere, Luc F and Hunt, John and Jennions, Michael D and Brooks, Robert},
title = {{Sexual conflict and cryptic female choice in the black field cricket, Teleogryllus commodus}},
journal = {Evolution},
year = {2006},
volume = {60},
number = {4},
pages = {792--800}
}
@article{Yorzinski:2010kk,
author = {Yorzinski, Jessica L and Platt, Michael L},
title = {{Same-Sex Gaze Attraction Influences Mate-Choice Copying in Humans}},
journal = {PLOS ONE},
year = {2010},
volume = {5},
number = {2},
pages = {e9115},
month = feb
}
@article{Svetec:2009ef,
author = {Svetec, N and Pavlidis, P and Stephan, W},
title = {{Recent Strong Positive Selection on \textit{Drosophila} \textit{melanogaster} HDAC6, a Gene Encoding a Stress Surveillance Factor, as Revealed by Population Genomic Analysis}},
journal = {Molecular Biology and Evolution},
year = {2009},
volume = {26},
number = {7},
pages = {1549--1556},
month = jun
}
@article{MONGKOLSAMRIT:2012ea,
author = {MONGKOLSAMRIT, S and MONGKOLSAMRIT, S and KOBMOO, N and KOBMOO, N and TASANATHAI, K and TASANATHAI, K and Khonsanit, A and Khonsanit, A and Noisripoom, W and Noisripoom, W and Srikitikulchai, P and Srikitikulchai, P and Somnuk, R and Somnuk, R and LUANGSA-ARD, J J and LUANGSA-ARD, J J},
title = {{Life cycle, host range and temporal variation of Ophiocordyceps unilateralis/Hirsutella formicarum on Formicine ants}},
journal = {Journal of Invertebrate Pathology},
year = {2012},
volume = {111},
number = {3},
pages = {217--224},
month = nov
}
@article{Venkatraman:2011dt,
author = {Venkatraman, Vinod and Venkatraman, Vinod and Huettel, Scott A and Huettel, Scott A and Chuah, Lisa Y M and Chuah, Lisa Y M and Payne, John W and Payne, John W and Chee, Michael W L and Chee, Michael W L},
title = {{Sleep deprivation biases the neural mechanisms underlying economic preferences.}},
journal = {Journal of Neuroscience},
year = {2011},
volume = {31},
number = {10},
pages = {3712--3718},
month = mar
}
@article{Chase:2006ix,
author = {Chase, R and Blanchard, K C},
title = {{The snail's love-dart delivers mucus to increase paternity}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2006},
volume = {273},
number = {1593},
pages = {1471--1475},
month = jun
}
@article{Lynch:2009fd,
author = {Lynch, Michael},
title = {{Estimation of allele frequencies from high-coverage genome-sequencing projects.}},
journal = {Genetics},
year = {2009},
volume = {182},
number = {1},
pages = {295--301},
month = may
}
@article{Dall:2004gu,
author = {Dall, S R X and Boyd, I L},
title = {{Evolution of mammals: lactation helps mothers to cope with unreliable food supplies}},
journal = {Proceedings of The Royal Society B-Biological Sciences},
year = {2004},
volume = {271},
number = {1552},
pages = {2049--2057},
month = oct
}
@article{Harmon:2009hm,
author = {Harmon, Luke J and Matthews, Blake and Des Roches, Simone and Chase, Jonathan M and Shurin, Jonathan B and Schluter, Dolph},
title = {{Evolutionary diversification in stickleback affects ecosystem functioning}},
journal = {Nature},
year = {2009},
volume = {458},
number = {7242},
pages = {1167--1170},
month = apr
}
@article{Wiedmann:2008gm,
author = {Wiedmann, Ralph T and Smith, Timothy PL and Nonneman, Dan J},
title = {{SNP discovery in swine by reduced representation and high throughput pyrosequencing}},
journal = {BMC Genetics},
year = {2008},
volume = {9},
number = {1},
pages = {81}
}
@article{Chen:2008ja,
author = {Chen, Johnny Shou-Chung and Wang, Tzi-Yuan and Tzeng, Tzong-Der and Wang, Chun-Yi and Wang, Daryi},
title = {{Evidence for positive selection in the TLR9 gene of teleosts}},
journal = {Fish {\&} Shellfish Immunology},
year = {2008},
volume = {24},
number = {2},
pages = {234--242},
month = feb
}
@article{Bateman:2012bo,
author = {Bateman, J R and Bateman, J R and Johnson, J E and Johnson, J E and Locke, M N and Locke, M N},
title = {{Comparing Enhancer Action in Cis and in Trans}},
journal = {Genetics},
year = {2012},
volume = {191},
number = {4},
pages = {1143--1155},
month = aug
}
@article{Wong:2010jl,
author = {Wong, Alex},
title = {{TESTING THE EFFECTS OF MATING SYSTEM VARIATION ON RATES OF MOLECULAR EVOLUTION IN PRIMATES}},
journal = {Evolution},
year = {2010},
volume = {64},
number = {9},
pages = {2779--2785},
month = sep
}
@article{Anonymous:2013vz,
title = {{An Evolutionary Perspective on Epistasis and the Missing Heritability}},
year = {2013},
pages = {1--11},
month = jan
}
@article{Kong:2013ek,
author = {Kong, Augustine and Frigge, Michael L and Masson, Gisli and Besenbacher, Soren and Sulem, Patrick and Magnusson, Gisli and Gudjonsson, Sigurjon A and Sigurdsson, Asgeir and Jonasdottir, Aslaug and Jonasdottir, Adalbjorg and Wong, Wendy S W and Sigurdsson, Gunnar and Walters, G Bragi and Steinberg, Stacy and Helgason, Hannes and Thorleifsson, Gudmar and Gudbjartsson, Daniel F and Helgason, Agnar and Magnusson, Olafur Th and Thorsteinsdottir, Unnur and Stefansson, Kari},
title = {{Rate of \textit{de novo} mutations and the importance of father{\textquoteright}s age to disease risk}},
journal = {Nature},
year = {2013},
volume = {488},
number = {7412},
pages = {471--475},
month = apr
}
@article{GRAHOVAC:1992vd,
author = {GRAHOVAC, B and Mayer, WE and VINCEK, V and FIGUEROA, F and OHUigin, C and TICHY, H and Klein, J},
title = {{MAJOR HISTOCOMPATIBILITY-COMPLEX DRB-GENES OF A NEW-WORLD MONKEY, THE COTTONTOP TAMARIN (SAGUINUS-OEDIPUS)}},
journal = {Molecular Biology and Evolution},
year = {1992},
volume = {9},
number = {3},
pages = {403--416}
}
@article{Abbot:2011fd,
author = {Abbot, Patrick and Abe, Jun and Abe, Jun and Alcock, John and Alcock, John and Alizon, Samuel and Alizon, Samuel and Alpedrinha, Joao A C and Alpedrinha, Joao A C and andersson, Malte and andre, Jean-Baptiste and andre, Jean-Baptiste and van Baalen, Minus and van Baalen, Minus and Balloux, Francois and Balshine, Sigal and Barton, Nick and Barton, Nick and Beukeboom, Leo W and Beukeboom, Leo W and Biernaskie, Jay M and Biernaskie, Jay M and Bilde, Trine and Borgia, Gerald and Breed, Michael and Breed, Michael and Brown, Sam and Brown, Sam and Bshary, Redouan and Buckling, Angus and Burley, Nancy T and Burley, Nancy T and Burton-Chellew, Max N and Burton-Chellew, Max N and Cant, Michael A and Chapuisat, Michel and Chapuisat, Michel and Charnov, Eric L and Charnov, Eric L and Clutton-Brock, TH and Cockburn, andrew and Cole, Blaine J and Cole, Blaine J and Colegrave, Nick and Colegrave, Nick and Cosmides, Leda and Cosmides, Leda and Couzin, Iain D and Couzin, Iain D and Coyne, Jerry A and Creel, Scott and Creel, Scott and Crespi, Bernard and Crespi, Bernard and Curry, Robert L and Curry, Robert L and Dall, Sasha R X and Day, Troy and Dickinson, Janis L and Dickinson, Janis L and Dugatkin, Lee Alan and Dugatkin, Lee Alan and El Mouden, Claire and El Mouden, Claire and Emlen, Stephen T and Emlen, Stephen T and Evans, Jay and Evans, Jay and Ferriere, Regis and Ferriere, Regis and Field, Jeremy and Foitzik, Susanne and Foitzik, Susanne and Foster, Kevin and Foster, Kevin and Foster, William A and Foster, William A and Fox, Charles W and Fox, Charles W and Gadau, Juergen and Gandon, Sylvain and Gardner, andy and Gardner, Michael G and Gardner, Michael G and Getty, Thomas and Getty, Thomas and Goodisman, Michael A D and Grafen, Alan and Grafen, Alan and Grosberg, Rick and Grosberg, Rick and Grozinger, Christina M and Gouyon, Pierre-Henri and Gouyon, Pierre-Henri and Gwynne, Darryl and Gwynne, Darryl and Harvey, Paul H and Harvey, Paul H and Hatchwell, Ben J and Heinze, J{\"u}rgen and Helantera, Heikki and Helantera, Heikki and Helms, Ken R and Helms, Ken R and Hill, Kim and Jiricny, Natalie and Jiricny, Natalie and Johnstone, Rufus A and Kacelnik, Alex and Kacelnik, Alex and Kiers, E Toby and Kiers, E Toby and Kokko, Hanna and Komdeur, Jan and Korb, Judith and Kronauer, Daniel and Kronauer, Daniel and K{\"u}mmerli, Rolf and K{\"u}mmerli, Rolf and Lehmann, Laurent and Lehmann, Laurent and Linksvayer, Timothy A and Lion, S{\'e}bastien and Lion, S{\'e}bastien and Lyon, Bruce and Lyon, Bruce and Marshall, James A R and Marshall, James A R and McElreath, Richard and Michalakis, Yannis and Michalakis, Yannis and Michod, Richard E and Michod, Richard E and Mock, Douglas and Mock, Douglas and Monnin, Thibaud and Monnin, Thibaud and Montgomerie, Robert and Moore, Allen J and Mueller, Ulrich G and Mueller, Ulrich G and No{\"e}, Ronald and No{\"e}, Ronald and Okasha, Samir and Okasha, Samir and Pamilo, Pekka and Parker, Geoff A and Pedersen, Jes S and Pedersen, Jes S and Pen, Ido and Pfennig, David and Pfennig, David and Queller, David C and Rankin, Daniel J and Rankin, Daniel J and Reece, Sarah E and Reece, Sarah E and Reeve, Hudson K and Reeve, Hudson K and Reuter, Max and Reuter, Max and Roberts, Gilbert and Roberts, Gilbert and Robson, Simon K A and Robson, Simon K A and Roze, Denis and Roze, Denis and Rousset, Francois and Rueppell, Olav and Sachs, Joel L and Sachs, Joel L and Santorelli, Lorenzo and Santorelli, Lorenzo and Schmid-Hempel, Paul and Schwarz, Michael P and Schwarz, Michael P and Scott-Phillips, Tom and Scott-Phillips, Tom and Shellmann-Sherman, Janet and Shellmann-Sherman, Janet and Sherman, Paul W and Shuker, David M and Smith, Jeff and Smith, Jeff and Spagna, Joseph C and Spagna, Joseph C and Strassmann, Beverly and Strassmann, Beverly and Suarez, andrew V and Sundstr{\"o}m, Liselotte and Sundstr{\"o}m, Liselotte and Taborsky, Michael and Taylor, Peter and Taylor, Peter and Thompson, Graham and Thompson, Graham and Tooby, John and Tooby, John and Tsutsui, Neil D and Tsuji, Kazuki and Tsuji, Kazuki and Turillazzi, Stefano and Turillazzi, Stefano and Ubeda, Francisco and Vargo, Edward L and Vargo, Edward L and Voelkl, Bernard and Voelkl, Bernard and Wenseleers, Tom and West, Stuart A and West-Eberhard, Mary Jane and West-Eberhard, Mary Jane and Westneat, David F and Wiernasz, Diane C and Wiernasz, Diane C and Wild, Geoff and Wrangham, Richard and Wrangham, Richard and Young, andrew J and Zeh, David W and Zeh, David W and Zeh, Jeanne A and Zeh, Jeanne A and Zink, andrew and Zink, andrew},
title = {{Inclusive fitness theory and eusociality.}},
journal = {Nature},
year = {2011},
volume = {471},
number = {7339},
pages = {E1--4; author reply E9--10},
month = mar
}
diff --git a/figures/.placeholder.md b/figures/.placeholder.md
deleted file mode 100644
index 3cb958d..0000000
--- a/figures/.placeholder.md
+++ /dev/null
...
this is a placeholder for the directory
diff --git a/formatted.bib b/formatted.bib
index eada893..f7475b2 100644
--- a/formatted.bib
+++ b/formatted.bib
...
@article{Stehr:1968vy,
author = {Stehr, F W and Cook, E F},
title = {{A revision of the genus \emph{\textit{Malacosoma}} Hubner in North
America (Lepidoptera: Lasiocampidae): systematics, biology, immatures, and
parasites.}},
journal = {U.S. Nat. Mus. Bull},
year = {1968}
diff --git a/header.tex b/header.tex
deleted file mode 100644
index 8f1d86b..0000000
--- a/header.tex
+++ /dev/null
...
\renewcommand{\@biblabel}[1]{\quad#1.}
diff --git a/layout.md b/layout.md
deleted file mode 100644
index 4cb139f..0000000
--- a/layout.md
+++ /dev/null
...
abstract.tex
beginflushleft_Large.tex
sectionAbstract_Some.tex
sectionIntroduction_.tex
sectionRecommendatio.tex
sectionAcknowledgmen.tex
sectionFigures.tex
sectionTables.tex
diff --git a/preamble.tex b/preamble.tex
deleted file mode 100644
index 98415ea..0000000
--- a/preamble.tex
+++ /dev/null
...
\documentclass{article}
\usepackage{amsfonts,amsmath,amssymb}
\usepackage{graphicx}
\usepackage{color}
\usepackage{url}
\bibliographystyle{plain}
diff --git a/sectionAbstract_Some.tex b/sectionAbstract_Some.tex
deleted file mode 100644
index 8b13789..0000000
--- a/sectionAbstract_Some.tex
+++ /dev/null
...
diff --git a/sectionAcknowledgmen.tex b/sectionAcknowledgmen.tex
deleted file mode 100644
index f64b0b6..0000000
--- a/sectionAcknowledgmen.tex
+++ /dev/null
...
\section*{Acknowledgments}
diff --git a/sectionFigures.tex b/sectionFigures.tex
deleted file mode 100644
index 19fe0f6..0000000
--- a/sectionFigures.tex
+++ /dev/null
...
\section*{Figures}
diff --git a/sectionIntroduction_.tex b/sectionIntroduction_.tex
deleted file mode 100644
index 4d24776..0000000
--- a/sectionIntroduction_.tex
+++ /dev/null
...
\section*{Introduction}
For biologists interested in understanding the relationship between fitness, genotype, and phenotype, modern sequencing technologies provide for an unprecedented opportunity to gain a deep understanding of genome level processes that together, underlie adaptation. Transcriptome sequencing has been particularly influential, and as a direct result, a diverse toolset for the assembly and analysis of transcriptome exists. Notable amongst the wide array of tools include several for quality visualization (FastQC (\url{http://www.bioinformatics.babraham.ac.uk/projects/fastqc/}) and SolexaQA \citep{Cox:2010ch}) read trimming (e.g. Trimmomatic \citep{Bolger:2014ek} and Cutadapt \citep{Martin:2011va}), read normalization (khmer \citep{Pell:2012id}), assembly (Trinity \citep{Haas:2013jq}, SOAPdenovoTrans \citep{Xie:2013wu}) and assembly verificaton (transrate \url{https://github.com/Blahah/transrate} and RSEM-eval \citep{Li:2014er}). \\
The ease with which these tools may be used to to produce transcriptome assemblies belies that true complexity underlying the overall process. Indeed, the subtle (and not so subtle) methodological challenges associated with transcriptome reconstruction means that you can easily fuck it up. Amongst the most challenging include isoform reconstruction, simultaneous assembly of low- and high-coverage transcripts, and [] \citep{Modrek:2001ud,Johnson:2003kh}, which together make good transcriptome assembly really difficult. \\
Methodological abuse is widespread. Particularly flagrant are abuses related to quality control of input data, the lack of understanding the role \textit{kmer} selection may play in accurate reconstruction, and lastly, abuses related to the lack of post-assembly quality evaluation. Here, we aim to define a set of evidence based analyses and methods aimed at improving transcriptome assembly, which in turn has significant effects on all downstream analyses.
To accomplish the proposed standardized methods, we have released a set of version controlled open-sourced code to facilitate this process.
diff --git a/sectionRecommendatio.tex b/sectionRecommendatio.tex
deleted file mode 100644
index fbc65ce..0000000
--- a/sectionRecommendatio.tex
+++ /dev/null
...
\section*{Recommendations}
For the typical transcriptome study, one should plan to generate a reference based on 1 or more tissue types. From each tissue, one should be generating between 50M and 100M strand-specific paired-end reads. Read length should be at least 100bp, with longer reads aiding in isoform reconstruction and contiguity. Because sequence polymorphism increases the complexity of the \textit{de bruijn} graph, and therefore may negatively effect the assembly itself, the reference transcriptome should be generated from reads corresponding to a single individual. When more then one individual is required to meet other requirements (e.g. number of reads), keeping the number of individuals to a minimum is paramount. \\
After visualizing the raw data, a vigorous adapter trimming step is implemented, typically using Trimmomatic. With adapter trimming may be a quality trimming step, though caution is required, as aggressive trimming may have detrimental effects on assembly quality. Specifically, we recommend trimming at Phred=2, a threshold associated with removal of the lowest quality bases. After adapter and quality trimming, it is recommended to once again visualize the data using SolexaQC. The .gz compressed reads are now ready for assembly. \\
diff --git a/sectionTables.tex b/sectionTables.tex
deleted file mode 100644
index ebb4c37..0000000
--- a/sectionTables.tex
+++ /dev/null
...
\section*{Tables}
diff --git a/title.tex b/title.tex
deleted file mode 100644
index 22f9753..0000000
--- a/title.tex
+++ /dev/null
...
The proper care and feeding of your transcriptome
diff --git a/untitled.tex b/untitled.tex
deleted file mode 100644
index a2e0039..0000000
--- a/untitled.tex
+++ /dev/null
...
\textit{Oh, an empty article!}
You can get started by \textbf{double clicking} this text block and begin editing. You can also click the \textbf{Insert} button below to add new block elements. Or you can \textbf{drag and drop an image} right onto this text. Happy writing!
diff --git a/web_hook b/web_hook
deleted file mode 100644
index 155bc40..0000000
--- a/web_hook
+++ /dev/null
...
https://www.authorea.com/article_git_access_bridges/web_hook/7K_vIfdI0ih1B3y19AbG2A
