deletions | additions       diff --git a/lib/assembly.mk b/lib/assembly.mk  index ba2a612..f5475e2 100644  --- a/lib/assembly.mk  +++ b/lib/assembly.mk 
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--quality_trimming_params "ILLUMINACLIP:$(CURDIR)/barcodes.fa:2:40:15 LEADING:2 TRAILING:2 MINLEN:25"  #######  ## Transrate Raw Samples samples.  #######  $(CURDIR)/transrate_raw/transrate.assemblies.csv:\  $(CURDIR)/$(samp10).P2/Trinity.fasta $(CURDIR)/$(samp20).P2/Trinity.fasta $(CURDIR)/$(samp50).P2/Trinity.fasta $(CURDIR)/$(samp100).P2/Trinity.fasta  transrate -t 30 \  -a $<,$(word 2,$^),$(word 3,$^),$(word 4,$^)  -e ../Mus_musculus.GRCm38.pep.all.fa \  -l /mnt/data3/macmanes/feeding/SRR797058.P2_1P.fq \  -r /mnt/data3/macmanes/feeding/SRR797058.P2_2P.fq  #######  ## Assemble EC samples.