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\section{Computational methods}
To solve the \(\ell_1\) optimization problem of eq.~\ref{eq:bpdn} we rely on the spectral projected gradient \(\ell_1\) (SPGL1) algorithm developed by van~den~Berg and Friedlander~\cite{Berg2008} and their freely-available implementation. The matrix for the change of base operation is given by the Kronecker product of \(P\) with itself, however, we do not build the matrix and perform all the matrix multiplications as implicit operations in terms of P. This last approach has a much smaller numerical cost and memory requirements. Numerically the condition \(PAP^T = B\) is satisfied up to an error of \(10^{-7}\) in the Frobenius norm (vectorial 2-norm).
To solve the \(\ell_1\) optimization problem of eq.~\ref{eq:bpdn} we
rely on the spectral projected gradient \(\ell_1\) (SPGL1) algorithm
developed by van~den~Berg and Friedlander~\cite{Berg2008} and their
freely-available implementation. The matrix for the change of base
operation is given by the Kronecker product of \(P\) with itself,
however, we do not build the matrix and perform all the matrix
multiplications as implicit operations in terms of P. This last
approach has a much smaller numerical cost and memory
requirements. Numerically the condition \(PAP^T = B\) is satisfied up
to an error of \(10^{-7}\) in the Frobenius norm (vectorial
2-norm). All quantum mechanical Hessian calculations were performed with
QChem~\cite{Shao_2006} version XXX at the
DFT theory level QChem 4.2~\cite{Shao_2006} software package, using
density functional theory with the
XXX B3LYP exchange-correlation functional
discretized using and the
XXX 6-31G* basis set.
Molecular All molecular mechanics
Hessian calculations were performed using freely-available open-source
Tinker~code Tinker 6.2 software package using the
{\color{red}XX} MM3 force
field. field~\cite{}.