Charith Bhagya Karunarathna edited subsection_Analysis_and_Approaches_begin__.tex  about 7 years ago

Commit id: cf3a2627655b53f345ed2853b06134aeff1fe953

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\item Rows were disease status of individuals, and columns corresponded to the three possible genotypes.  \end{itemize}  \item Each of the variant sites in the case-control sample is tested for an association with the disease outcome.  \item Recommended when The $-log_{10}$ p value from  the cell counts are small, as above test  is expected recorded as the association signal  for rare variants. each variant.  \end{itemize}  \item Single-variant tests are less powerful for rare variants than for common variants \cite{Asimit_2010}. We therefore considered three other ways to assess the association signal based on pooled-variant, joint-modelling and tree-based methods.  \end{itemize}