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Charith Bhagya Karunarathna added section_Results_begin_enumerate_item__.tex
over 7 years ago
Commit id: 4244bd7a8480db868da02c21ab1c01c2fc5477d2
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\section{Results}
\begin{enumerate}
\item Example dataset
\begin{enumerate}
\item Summary for population and sample
\begin{itemize}
\item Information on the SNVs in general (i.e. even the ones that don't appear in the study sample) such as;
\begin{itemize}
\item How many rSNVs?
\item What are their positions in the genomic region?
\item What are their MAFs in the population?
\item Do they appear in the study sample and if yes, what is the frequency of their minor allele in the sample of cases and what is the frequency of their minor allele in the controls?
\end{itemize}
\item Information on the number of recombination breakpoints between the SNVs that appear in the study sample
\end{itemize}
\item LD between rSNVs and others for population
\item Single-variant statistics plot
\item Compare pooled variant statistics
\item Joint-modelling statistics
\item How many haplotypes that carry rSNVs for both cases and controls. (Clustered bar chart)
\end{enumerate}
\item 200 datasets.
\begin{itemize}
\item Localizing the signal: ecdf of avg. distance from the peak
\item Association signal detection: ecdf of p-values
\end{itemize}
\end{enumerate}
