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Charith Bhagya Karunarathna edited subsection_Several_popular_methods_begin__.tex
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\end{itemize}
\item C-alpha \cite{Neale_2011}: %Test the variance of the effect size for variants in a specific genomic window (No effect, increase or decrease risk).
\item C-alpha test of \cite{Neale_2011} is a variance components approach that assumes the effects of variants are random.
\item C-alpha procedure tests the variance of genetic effects under the assumption that variants observed in cases and controls are a mixture of
deleterious, risk, protective or neutral variants.
\begin{itemize}
\item
Sensitive to risk and protective variants in the same gene.
\item Powerful \citeNP{Neale_2011} found that C-alpha showed greater power than burden test when
the effects are in different directions. protective and risk variant exist.
\item R package: SKAT
\end{itemize}
\end{itemize}
\item Joint-modeling method