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We obtained 13 risk SNVs in the example dataset. Of these 13 risk SNVs, 8 were polymorphic in the case-control sample. We also found that 2630 of 4000 SNVs were polymorphic in the sample. Table 1 summarizes the physical distances, number of recombinations and minor allele frequencies (MAF) of these 13 risk SNVs in the example dataset.    \begin{table}[!]  %\centering    \centering\caption{ Summaries for risk SNVs}  %\label{my-label}  %\small  %\centering  \begin{tabular}{ccccccc}  \hline  Risk SNV & Physical dist(kbp) & \begin{tabular}[c]{@{}c@{}}Polymorphic \\ in sample\end{tabular} & \begin{tabular}[c]{@{}c@{}}No of \\ recombinations\\ in sample$^a$ \end{tabular} & \begin{tabular}[c]{@{}c@{}}MAF in \\ population\end{tabular} & \begin{tabular}[c]{@{}c@{}}MAF \\ in cases\end{tabular} & \begin{tabular}[c]{@{}c@{}}MAF\\ in controls\end{tabular} \\ \hline  rSNV1 & 953.0 & yes & NA & 0.0140 & 0.05 & 0.02 \\   rSNV2 & 958.0 & no & NA & 0.0050 & 0.00 & 0.00 \\   rSNV3 & 969.0 & yes & 15 & 0.0003 & 0.01 & 0.00 \\   rSNV4 & 992.5 & no & NA & 0.0003 & 0.00 & 0.00 \\   rSNV5 & 1007.0 & yes & 28 & 0.0017 & 0.02 & 0.00 \\  rSNV6 & 1009.0 & no & NA & 0.0003 & 0.00 & 0.00 \\  rSNV7 & 1010.0 & yes & 3 & 0.1250 & 0.33 & 0.17 \\  rSNV8 & 1011.0 & yes & 0 & 0.0170 & 0.04 & 0.01 \\  rSNV9 & 1021.0 & yes & 13 & 0.0743 & 0.21 & 0.05 \\  rSNV10 & 1022.0 & no & NA & 0.0003 & 0.00 & 0.00 \\  rSNV11 & 1034.0 & yes & 17 & 0.0013 & 0.01 & 0.00 \\  rSNV12 & 1041.5 & yes & 7 & 0.0140 & 0.00 & 0.00 \\  rSNV13 & 1046.5 & no & NA & 0.0020 & 0.00 & 0.00 \\ \hline  \end{tabular}  \smallskip  $^{a}$The number of recombinations between current and previous risk SNV, for risk SNVs that are polymorphic in the case-control sample.    \end{table}