Authorea

Anisha Keshavan added We_did_not_use_the__.tex over 8 years ago

Commit id: c66976cacd4678dd9351716e995c2e145bc8c235

deletions | additions

We did not use the -3T flag, because we have not noticed a big difference in our freesurfer processing in other datasets in our lab. But it is certainly important to be specific on how data was processed, so we edited the text to say: \textit{"A neuroradiologist reviewed all images to screen for major artifacts and pathology. The standard Freesurfer \cite{freesurferPaper} version 5.3.0 cross-sectional pipeline \textbf{(recon-all)} was run on each site's native T1-weighted protocol, using the RedHat 7 operating system. \textbf{Both 1.5T and 3T scans were run with the same parameters (without using the -3T flag), meaning that the non-uniformity correction parameters were kept at the default values.}"}