deletions | additions       diff --git a/Methods.md b/Methods.md  index bf1d9a9..e267e7c 100644  --- a/Methods.md  +++ b/Methods.md 
...
FastTree \cite{19377059} was used with default settings to build an unrooted phylogeny. Dendroscope 3 \cite{22780991} was used to view and edit the phylogenetic tree in order to 1) root the tree with a clade that is sister to a well-supported clade containing strain Coronado(T), 2) prune the tree to remove taxa outside the clade containg the outgroup, and 3) "clean up" the tree.