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Madison edited Building a 16S rDNA Phylogenetic Tree.md
almost 10 years ago
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##Building the Tree with FastTree
There are two ways to get FastTree, which will be required for building the tree from your alignment. The first is to
move to section 10.1.4 and install use Phylosift
(installed in 9.1.4) which contains a working version of FastTree. In this case, you will simply call the program from the Phylosift directory with the following command (be sure the path to Phylosift
is correct): calls the correct version):
/phylosift/osx/FastTree -nt RDP_alignment_clean.fa > tree_file.tre