process.sh. This Bash script downloads the ENCODE CTCF ChIP-seq data from multiple types of kidney samples and calls peaks. See github.com/jdblischak/git-for-science/tree/master/code for instructions on running it.

clean.py. This Python script filters peaks with a fold change cutoff and merges peaks from the different kidney samples. See github.com/jdblischak/git-for-science/tree/master/code for instructions on running it.

analyze.R. This R script creates diagnostic plots on the length of the peaks and their distribution across the genome. See github.com/jdblischak/git-for-science/tree/master/code for instructions on running it.