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Jonathan A. Eisen edited Methods.md
over 8 years ago
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16S rRNA gene (515F-806R) was amplified with region-specific primers that included
the Illumina flowcell adapter sequences and a twelve base barcode sequence. Each 25 ul
PCR reaction contained the following: 12 ul of PCR water certified DNA-free (MO BIO),
10ul 10 ul of 1x 5 Prime HotMasterMix (5 Prime), 1 ul of Forward Primer (5uM concentration,
200pM 200 pM final), 1 ul of Golay Barcode Tagged Reverse Primer (5uM concentration, 200pM
final), and 1 ul of template DNA. The conditions for PCR were as follows: 94°C for 3
minutes to denature the DNA, with 35 cycles at 94 °C for 45 s, 50 °C for 60 s, and 72 °C
for 90 s, with a final extension of 10 min at 72 °C to ensure complete amplification.