Jenna M. Lang edited Introduction.md  over 9 years ago

Commit id: 48f8c7769a618ae82a1fb4057cf788f8f7335ccb

deletions | additions      

       

#Introduction  There is a growing appreciation of the importance of communities of microbes found in diverse environments from the oceans, to soil, to the insides and outsides of various plants and animals. Recently there has been an expanding focus on the microbial ecology of the "built environment" - those human constructed entities like buildings, cars, ships and planes - places where we spend a large fraction of our time. One somewhat unexplored - yet certainly important - type of built environment is that found in space. As humans expand their reach into the solar system - with more and more plans for space travel, and possible colonization of other planets and moons, we believe it is of critical importance to understand the microbial ecology of the built environments being utilized for such endeavors.  Interest in the microbial occupants of spacecraft long precedes the launch of the International Space Station \cite{11883448}\cite{5173646}. Early work primarily focused on ensuring that spacecraft were free of microbial contaminants in an effort to avoid inadvertent panspermia (seeding other planets with microbes from Earth.) With the launch of the ISS, it was clear that this new built environment would be housing microbes as well as humans. Calls were made for a better understanding of microbial ecology and human-microbe interactions during extended stays in space \cite{pierson2007microbial} \cite{14994179}. \cite{14994179} \cite{14569419}.  Efforts were made to establish a baseline microbial census.For example,  Novikova et al \cite{16364606} obtained more than 500 samples from the air, potable water, and surfaces of the ISS, over the course of 6 years. More examples While the earliest studies were limited by their reliance on culturing to identify microbial species. Culture-independent approaches were eventually implemented, including 16S rDNA PCR surveys \cite{14749908} and the Lab-On-a-Chip Application Development Portable Test System (LOCAD-PTS), which allows astronauts to test surfaces for lipopolysaccharide (LPS - a marker for gram negative bacteria). The capability  of monitoring microbes: \cite{14569419} the LOCAD-PTS was expanded in 2009 to include an assay for fungi (beta-glucan, a fungal cell wall component) and gram positive bacteria (lipoteichoic acid, a gram positive cell wall component.) This year, the first large-scale, culture-independent 16S RDNA PCR survey was conducted using the Roche 454 platform. We report here on an effort to use 16S rDNA PCR sequencing on the Illumina platform to examine the microbial communities found on 15 surfaces inside the International Space Station.  These studies were limited by their reliance on culturing We have also compiled a collection of such papers in an online resource  to identify microbial species. provide a more comprehensive historical perspective of this kind of work (see http://www.mendeley.com/groups/844031/microbiology-of-the-built-environment/papers/added/0/tag/space/).  The first use of 16S on the ISS:\cite{14749908}  Lab-On-a-Chip Application Development Portable Test System (LOCAD-PTS) was launched in 2006, and allows astronauts to test surfaces for endotoxin (a marker for gram negative bacteria)  There have been a reasonable number of studies of the microbial ecology and diversity of built environments in space. We have compiled a collection of such papers in an online resource to provide a historical perspective to this kind of work (see http://www.mendeley.com/groups/844031/microbiology-of-the-built-environment/papers/added/0/tag/space/). Though these studies have been of great value, none we could find make use of the approach that is dominated studies of other communities over the last few years. This approach is to use so called "next generation" DNA sequencing to characterize the communities of microbes found in particular environments. Since next generation sequencing has become very inexpensive and easy to conduct, it has become a regular tool in characterzie a large number of microbial samples. We report here on an effort to use such next generation sequencing methods to begin to study the microbial communities found on the International Space Station. This project was done not just for the science but also for its outreach and education potential. T SAY MORE ON THIS...