deletions | additions       diff --git a/16S rDNA Sequencing and Analysis (Organism Identification).md b/16S rDNA Sequencing and Analysis (Organism Identification).md  index 7283122..c6d0550 100644  --- a/16S rDNA Sequencing and Analysis (Organism Identification).md  +++ b/16S rDNA Sequencing and Analysis (Organism Identification).md 
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sudo cp ~/Downloads/muscle /usr/bin  Be careful using the "sudo" command since this will give you access to commands that are normally restricted.  ###Convert Files from .abi to .fastq  To run the merge\_sanger\_16s.pl you will first need to convert your read files from .abi to .fastq