David Coil edited Data Submission.md  about 9 years ago

Commit id: b3114cd3ed8c21cf8129a19eae348cf72963d5d5

deletions | additions      

       

##Submitting contigs only  Use this section if submitting only contigs, presumably in FASTA format  Navigate to http://www.ncbi.nlm.nih.gov. [http://www.ncbi.nlm.nih.gov](http://www.ncbi.nlm.nih.gov).  Create an account and/or login. Then, create a BioProject at NCBI by navigating to https://submit.ncbi.nlm.nih.gov/subs/bioproject/ [https://submit.ncbi.nlm.nih.gov/subs/bioproject/](https://submit.ncbi.nlm.nih.gov/subs/bioproject/)  and clicking on "New submission." Fill in the personal information for the submitter. Below, in italics, are the responses that we typically give for a genome sequencing project. 

##Create a Whole Genome Shotgun (WGS) Submission  Navigate to  https://submit.ncbi.nlm.nih.gov/subs/wgs/ [https://submit.ncbi.nlm.nih.gov/subs/wgs/](https://submit.ncbi.nlm.nih.gov/subs/wgs/)  Click on the New Submission button at the top  Submitter  -fill in your own information 

**Create a SBT template**  Create a SBT template file at NCBI   http://www.ncbi.nlm.nih.gov/WebSub/template.cgi [http://www.ncbi.nlm.nih.gov/WebSub/template.cgi](http://www.ncbi.nlm.nih.gov/WebSub/template.cgi)  The BioProject # is the Bioproject ID starting with "PRJNA" which you received above, BioSample can be left blank  When you click create the template, it will automatically download to your computer as template.sbt. We recommend immediately renaming the file to the appropriate project.  **Tbl2asn**  Download the tbl2asn program from   ftp://ftp.ncbi.nih.gov/toolbox/ncbi\_tools/converters/by\_program/tbl2asn/ [ftp://ftp.ncbi.nih.gov/toolbox/ncbi\_tools/converters/by\_program/tbl2asn/](ftp://ftp.ncbi.nih.gov/toolbox/ncbi\_tools/converters/by\_program/tbl2asn/)  If you are using Safari, a window will pop up asking for login information, just choose guest and unzip the version of the program that is compatible with your operating system. Other browsers will take you to a page with a lot of tbl2asn programs, download the one compatible with your operating system. 

Go to:  https://www.ebi.ac.uk/ena/about/sra_submissions [https://www.ebi.ac.uk/ena/about/sra_submissions](https://www.ebi.ac.uk/ena/about/sra_submissions)  And create an account