deletions | additions       diff --git a/Genome Assembly and Annotation.md b/Genome Assembly and Annotation.md  index 74fe103..e69a325 100644  --- a/Genome Assembly and Annotation.md  +++ b/Genome Assembly and Annotation.md 
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##Annotation  ###Options  There ***Define annotation and describe how it works (just like you did for assembly***  *There  are a number of different pipelines available for annotation of bacterial genomes. These include Prokka (\cite{Seemann_2014}), IMG (\cite{Markowitz_2014}), RAST (\cite{Overbeek_2014}), PGAP (\cite{Angiuoli_2008}) and others. + Prokka  Command line based