this is for holding javascript data
Jonathan A. Eisen edited Building a 16S rDNA Phylogenetic Tree.md
over 9 years ago
Commit id: 98229d6b8df10cace5fd2510cfbb158cd1f11002
deletions | additions
diff --git a/Building a 16S rDNA Phylogenetic Tree.md b/Building a 16S rDNA Phylogenetic Tree.md
index 542c1a2..ddde137 100644
--- a/Building a 16S rDNA Phylogenetic Tree.md
+++ b/Building a 16S rDNA Phylogenetic Tree.md
...
The goal of this section is to obtain a 16S alignment from RDP that can be used to build a tree. This procedure has the added benefit of providing an independent verification of the taxonomic assignment of your sequence based on the BLAST results.
1. Go to
rdp.cme.msu.edu [http://rdp.cme.msu.edu](http://rdp.cme.msu.edu)
2. Create an account
3. Click on my RDP/login
4. Upload the fasta file containing your
16s 16S sequence
5. Assign it a group name (this is what the program will label your sequence/organism). Choose this carefully since that will be the name on the final tree.
6. Click the "+" next to the sequence, to add it to your cart
7. Click on CLASSIFIER at the top of the page