deletions | additions       diff --git a/16S rDNA Sequencing and Analysis (Organism Identification).md b/16S rDNA Sequencing and Analysis (Organism Identification).md  index f256432..2d49a52 100644  --- a/16S rDNA Sequencing and Analysis (Organism Identification).md  +++ b/16S rDNA Sequencing and Analysis (Organism Identification).md 
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Open a Terminal window and type:  ./Applications/seqtrace-0.9.0/seqtrace.py /Applications/seqtrace-0.9.0/seqtrace.py  This syntax will only work if the SeqTrace folder’s name is seqtrace-0.9.0, if you saved it under a different name you will need to replace seqtrace-0.9.0 with the name of that folder 
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###MUSCLE  In order to run this script you will need to download MUSCLE \cite{Edgar_2004} from here: http://www.drive5.com/muscle/downloads.htm. Use the Archive Utility to open the file, change the name of the executable file from something like "muscle3.8.31\_i86darwin64" to "muscle," and move it into your bin directory via the terminal with the following syntax (you will need to know your admin password to do this):  sudo cp /Downloads/muscle ~/Downloads/muscle  /usr/bin ###Convert Files from .abi to . fastq