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Alberto Pepe edited Data Submission.md
about 9 years ago
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Run the tbl2asn program using the following syntax. You will need to fill out the organism name, strain, location, collection date, isolation source specific to your own project.
path_to_program/tbl2asn -p path_to_files -t template_file_name
-M n -Z discrep -j "[organism=X] [strain=X] [country=X: city,
state abbreviation] [collection_date=X] [isolation-source=X] [gcode=11]"
Following the -p is the path to the directory containing the FSA file, following the -t is the path to and name of the SBT template file
Sample syntax
Desktop/ncbi/tbl2asn -p ~/Desktop/ncbi -t ~/Desktop/ncbi/template-1.sbt
-M n -Z discrep –j "[organism=Ruthia magnifica str. UCD-CM][strain=UCD-CM]
[country=USA: Davis, CA][collection_date=2002][isolation-source=Calyptogena
magnifica tissue][gcode=11]"
The program will output the necessary files into the directory you created earlier