deletions | additions       diff --git a/Data Submission.md b/Data Submission.md  index e378c3e..4a12394 100644  --- a/Data Submission.md  +++ b/Data Submission.md 
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eg:   perl /Users/Madison/Desktop/a5_miseq_macOS_20140113/bin/fasta2agp.pl /Users/Madison/Desktop/a5_miseq_macOS_20140113/example/phiX.a5.final.scaffolds.fasta /Users/Madison/Desktop/a5_miseq_macOS_20140113/example/  phiX.a5.final.scaffolds.fasta  > phiX.a5.scaffolds.agp If this runs successfully then you should see a both the FSA and AGP files in your current directory.