deletions | additions       diff --git a/Genome Assembly and Annotation.md b/Genome Assembly and Annotation.md  index f12a0e8..445fdc1 100644  --- a/Genome Assembly and Annotation.md  +++ b/Genome Assembly and Annotation.md 
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  Then, drag and drop in the input file(s) into the same Terminal window (or type the path to them if you know it). Finally, type a name that will be used as part of all of your output files. So, your command line should look like this:  /Applications/a5_pipeline/bin/a5_pipeline.pl SequenceFile1.fastq SequenceFile2.fastq MyGenome The program may take a few hours to run. Once it is completed, the terminal will display   Final assembly in MyGenome.final.scaffolds.fasta. The complete assembly will be located in the a5\_output folder.