this is for holding javascript data
Aaron Darling edited Library Preparation and Sequencing .md
over 9 years ago
Commit id: 5818e117124c60a0ae3d15283a7c6b4d721ac62b
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To downsample the data navigate to the directory you just created (in the terminal) and use the following command
/sub_sample_reads ./subsample_reads.pl file1 file2 #_reads_to_keep output_file_name
for example
/Users/Madison/Desktop/sub_sample/sub_sample_reads.pl ./subsample_reads.pl test_1.fq test_2.fq 250 my_reads.fastq
For further directions and documentation you can view the script on github https://github.com/gjospin/scripts/blob/master/subsample_reads.pl