deletions | additions       diff --git a/Genome Assembly and Annotation.md b/Genome Assembly and Annotation.md  index 389ecbf..5ee5008 100644  --- a/Genome Assembly and Annotation.md  +++ b/Genome Assembly and Annotation.md 
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Run  ./phylosift search contig\_file\_name contig_file_name  For example:  ./phylosift search /Users/microBEnet/Desktop/Data-Genomes/Pantoea\_Tatumella/tatumella/tatumella.final.scaffolds.fasta.contigs.fsa /Users/microBEnet/Desktop/Data-Genomes/Pantoea_Tatumella/tatumella/tatumella.final.scaffolds.fasta.contigs.fsa  Note: The first time you run PhyloSift it has to download a marker gene database so it may take a few minutes.