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David Coil edited Data Submission.md
almost 10 years ago
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Submitter
-fill in your own information
General Info
BioProject-Yes, + BioProject-_Yes_, add the BioProject identification sequence (from the BioProject submission, starts with PRJNA)
Biosample-No + Biosample-_No_
+ Release date-Optional but we recommend
“Release “_Release immediately following
curation” curation_”
-Don’t check the box stating, “Genome assembly structured comment is in the contig .sq file”
+ Assembly Method-Choose
other, _other_, fill in the blank with A5 Assembly Pipeline
+ Version or date program was run –
Sample here _SAMPLE HERE_
+ Assembly name –
Sample here give your assembly an appropriate name
+ Genome coverage-
this is provided in the output from A5
+ Sequencing technology –
Illumina _Illumina_ (Miseq or HiSeq)
+ Is this the full representation of the genome?
Yes _Yes_
+ Is this the final version?
Yes _Yes_
+ Do you intend to annotate this version?
No _No_
+ Is it a part of a multiisolate project?
No _No_
+ Is it a de novo assembly?
Yes _Yes_
+ Is it an update of existing submission? For most projects the answer to this will be
no _no_
+ BioSample
Type
-Select Microbe Type: _Microbe_
+ BioSample attributes
+ Sample Name
+ Organism
+ Strain
+ Collection date
+ Geographic location
+ Isolation source
Files
Select We have files for traditional split contigs OR gapped sequences