deletions | additions       diff --git a/Data Submission.md b/Data Submission.md  index ffb6c6b..9bd7c49 100644  --- a/Data Submission.md  +++ b/Data Submission.md 
...
#Data Submission  This section describes how to submit contigs and scaffolds (if applicable) as a Whole Genome Shotgun (WGS) submission to Genbank. We also recommend allowing NCBI to annotate the genome themselves, since submitting RAST annotations to Genbank can be prohibitively complicated. The genomes are automatically shared with the DNA Data Bank of Japan (DDBJ) and the European Molecular Biology Laboratory (EBML). In addition, genomes from Genbank are automatically pulled into the Integrated Microbial Genomes (IMG) database hosted at the Joint Genome Institute (JGI), and are annotated there as well. This section also describes how to submit the raw reads, in this case we use the European Nucleotide Archive (ENA) for ease of use but the reads will be automatically incorporated into the Short Read Archive (SRA) at NCBI as well.  To submit a genome, you must first creat create  a "BioProject" at NCBI. When that is complete, a separate process is required to submit the genome sequence. Before submitting your genome, you will need to have available 4-5 files which are listed below. File types used in data submission:  * AGP file (.agp). This is a file required by NCBI to describe scaffolding (if applicable)  * FASTA file (.fasta). This is the standard filetype file type  for sequence data, produced in this case by A5-miseq * FSA file (.fsa). Same as a FASTA file but with a different extension  * SQN file (.sqn). The filetype file type  for sequence data required by NCBI * SBT file (.sbt). This is a template filetype file type  used by NCBI ##FASTA2AGP  First, create the .agp file  
...
Select the file(s) containing the reads and click Upload.   (Note that paired-end data is required to be in two separate fastq files. If your data came as one interleaved file, then the seperated separated  fastq files can be found in the directory where the A5 assembly was performed as [project name].raw1\_p1.fastq.gz and [project name].raw1\_p2.fastq.gz ) Note that the only acceptable file types for fastq files are gzip (.gz) and bzip (.bz2). To gzip files in the Terminal use the following syntax: 
...
After completion, return to EMBL (the new submission tab of the SRA Webin submission system) and select the Next button. During this process, refreshing the page or navigating away from the page will reset the form and the information will be lost.  Click Create a New Study. Fill in descriptions of the project and proceed to next tab. Select the appropriate metatdata metadata  format, or in most cases the ENL default sample checklist at the bottom. Note that the default release date is three months from the current date, change this if the data should be released sooner. You should now be at the Sample page. Required fields are listed on the right and optional additional fields can be selected from the options on the right. Fill out the appropriate fields and click on Next.