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Jenna M. Lang deleted file Table 2: Nutrients and Meal Categories that differed significantly in KEGG (level 3) pathways as predicted by PICRUSt.md
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diff --git a/Table 2: Nutrients and Meal Categories that differed significantly in KEGG (level 3) pathways as predicted by PICRUSt.md b/Table 2: Nutrients and Meal Categories that differed significantly in KEGG (level 3) pathways as predicted by PICRUSt.md
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#Table 6: Nutrients and Meal Categories that differed significantly in KEGG (level 3) pathways as predicted by PICRUSt
| Nutrient/Descriptor | KEGG functional category (level 3) | Type of test used | p-value |
|---------------------|------------------------------------------------------------|-------------------|-------------|
| Calcium_bin | Peptidases | ANOVA | 0.039 |
| Carotene\_beta_bin | Prenytransferases | Welch's T-test | 0.041 |
| Carotene\_beta_bin | Vibrio cholera pathogenic cycle | 0.041 | 0.042 |
| Dairy | Other glycan degradation | Welch's T-test | 0.041 |
| Protein | Phenypropanoid biosynthesis | ANOVA | 0.021 |
| Vitamin\_C_bin | Calcium signaling pathway | ANOVA | 0.023 |
| Vitamin\_C_bin | Transporters | ANOVA | 0.049 |
| Vitamin_A | Cytoskeleton proteins | ANOVA | 0.017451421 |
| Vitamin_A | Peptidases | ANOVA | 0.019130989 |
| Vitamin_A | Flavonoid biosynthesis | ANOVA | 0.023972731 |
| Vitamin_A | Germination | ANOVA | 0.029007085 |
| Vitamin_A | Chaperones and folding catalysts | ANOVA | 0.031168211 |
| Total/_lipid/_bin | Secondary bile acid biosynthesis | ANOVA | 0.029181829 |
| Total/_lipid/_bin | Biosynthesis of siderophore group nonribosomal peptides | ANOVA | 0.043392615 |
| Sodium | Peptidases | ANOVA | 0.014721635 |
| Sodium | Benzoate degradation | ANOVA | 0.019865137 |
| Sodium | Limonene and pinene degradation | ANOVA | 0.031164989 |
| Sodium | Butanoate metabolism | ANOVA | 0.032537666 |
| Sodium | Nucleotide excision repair | ANOVA | 0.033766923 |
| Sodium | Phenylalanine, tyrosine and tryptophan biosynthesis | ANOVA | 0.036768304 |
| Sodium | Peroxisome | ANOVA | 0.037176174 |
| Sodium | Ethylbenzene degradation | ANOVA | 0.039923012 |
| Sodium | Naphthalene degradation | ANOVA | 0.040749468 |
| Sodium | Restriction enzyme | ANOVA | 0.043486893 |
| Sodium | Tyrosine metabolism | ANOVA | 0.047200716 |
| Iron_bin | Carbon fixation in photosynthetic organisms | ANOVA | 0.021668245 |
| Iron_bin | Protein kinases | ANOVA | 0.022263474 |
| Iron_bin | Translation proteins | ANOVA | 0.024669694 |
| Iron_bin | Pyruvate metabolism | ANOVA | 0.032434551 |
| Iron_bin | Thiamine metabolism | ANOVA | 0.038685974 |
| Iron_bin | D-Glutamine and D-glutamate metabolism | ANOVA | 0.041514757 |
| Iron_bin | One carbon pool by folate | ANOVA | 0.042928705 |
| Fiber_bin | Other glycan degradation | ANOVA | 0.014660951 |
| Fiber_bin | N-Glycan biosynthesis | ANOVA | 0.042139092 |
| Fiber_bin | Proteasome | ANOVA | 0.047590993 |
| Fiber_bin | Prostate cancer | ANOVA | 0.048468144 |
| Fiber_bin | Antigen processing and presentation | ANOVA | 0.048618504 |
| Fiber_bin | Progesterone-mediated oocyte maturation | ANOVA | 0.048618504 |
| Fiber_bin | Other transporters | ANOVA | 0.049130295 |
| Fermented | Transcription factors | Welch's T-test | 0.009468352 |
| Fermented | Phosphonate and phosphinate metabolism | Welch's T-test | 0.011059743 |
| Fermented | Cytoskeleton proteins | Welch's T-test | 0.011669915 |
| Fermented | Amoebiasis | Welch's T-test | 0.012857954 |
| Fermented | Oxidative phosphorylation | Welch's T-test | 0.013841012 |
| Fermented | Transporters | Welch's T-test | 0.015647729 |
| Fermented | Protein processing in endoplasmic reticulum | Welch's T-test | 0.017210951 |
| Fermented | Riboflavin metabolism | Welch's T-test | 0.017938599 |
| Fermented | Steroid hormone biosynthesis | Welch's T-test | 0.020976432 |
| Fermented | PPAR signaling pathway | Welch's T-test | 0.021710104 |
| Fermented | Peroxisome | Welch's T-test | 0.02186366 |
| Fermented | Citrate cycle (TCA cycle) | Welch's T-test | 0.021867149 |
| Fermented | Toluene degradation | Welch's T-test | 0.022788506 |
| Fermented | Carbon fixation pathways in prokaryotes | Welch's T-test | 0.024411154 |
| Fermented | alpha-Linolenic acid metabolism | Welch's T-test | 0.026939926 |
| Fermented | Methane metabolism | Welch's T-test | 0.030552388 |
| Fermented | Synthesis and degradation of ketone bodies | Welch's T-test | 0.031611873 |
| Fermented | RNA degradation | Welch's T-test | 0.032553878 |
| Fermented | Dioxin degradation | Welch's T-test | 0.036756638 |
| Fermented | Adipocytokine signaling pathway | Welch's T-test | 0.04018659 |
| Fermented | Benzoate degradation | Welch's T-test | 0.040925365 |
| Fermented | Chlorocyclohexane and chlorobenzene degradation | Welch's T-test | 0.04187257 |
| Fermented | Nicotinate and nicotinamide metabolism | Welch's T-test | 0.049217654 |
| Fatty\_acids\_bin | Other glycan degradation | ANOVA | 0.002774493 |
| Fatty\_acids\_bin | N-Glycan biosynthesis | ANOVA | 0.009783852 |
| Fatty\_acids_bin | Proteasome | ANOVA | 0.012010853 |
| Fatty\_acids_bin | Prostate cancer | ANOVA | 0.014268966 |
| Fatty\_acids_bin | Antigen processing and presentation | ANOVA | 0.014432811 |
| Fatty\_acids_bin | Progesterone-mediated oocyte maturation | ANOVA | 0.014432811 |
| Fatty\_acids_bin | NOD-like receptor signaling pathway | ANOVA | 0.019075184 |
| Fatty\_acids_bin | Chloroalkane and chloroalkene degradation | ANOVA | 0.02167892 |
| Fatty\_acids_bin | Taurine and hypotaurine metabolism | ANOVA | 0.022063389 |
| Fatty\_acids_bin | Sphingolipid metabolism | ANOVA | 0.028794158 |
| Fatty\_acids_bin | Other transporters | ANOVA | 0.033398699 |
| Fatty\_acids_bin | Primary bile acid biosynthesis | ANOVA | 0.033705405 |
| Fatty\_acids_bin | Stilbenoid, diarylheptanoid and gingerol biosynthesis | ANOVA | 0.034295974 |
| Fatty\_acids_bin | Glycolysis / Gluconeogenesis | ANOVA | 0.041601128 |
| Fatty\_acids_bin | Amyotrophic lateral sclerosis (ALS) | ANOVA | 0.045157824 |
| Fatty\_acids_bin | Purine metabolism | ANOVA | 0.048100832 |
| Energy_bin | Nucleotide excision repair | ANOVA | 0.002532996 |
| Energy_bin | Chromosome | ANOVA | 0.003249937 |
| Energy_bin | Ubiquinone and other terpenoid-quinone biosynthesis | ANOVA | 0.00500867 |
| Energy_bin | Mismatch repair | ANOVA | 0.006531889 |
| Energy_bin | Photosynthesis proteins | ANOVA | 0.00816459 |
| Energy_bin | Photosynthesis | ANOVA | 0.009638124 |
| Energy_bin | Restriction enzyme | ANOVA | 0.009805668 |
| Energy_bin | Carbohydrate metabolism | ANOVA | 0.009966615 |
| Energy_bin | Limonene and pinene degradation | ANOVA | 0.010243464 |
| Energy_bin | DNA replication proteins | ANOVA | 0.010451223 |
| Energy_bin | Lipoic acid metabolism | ANOVA | 0.010843214 |
| Energy_bin | Phenylalanine, tyrosine and tryptophan biosynthesis | ANOVA | 0.011059994 |
| Energy_bin | Peptidases | ANOVA | 0.01407109 |
| Energy_bin | DNA repair and recombination proteins | ANOVA | 0.015827001 |
| Energy_bin | Type II diabetes mellitus | ANOVA | 0.016276453 |
| Energy_bin | alpha-Linolenic acid metabolism | ANOVA | 0.018912274 |
| Energy_bin | Butanoate metabolism | ANOVA | 0.020566276 |
| Energy_bin | Homologous recombination | ANOVA | 0.025440256 |
| Energy_bin | Flavone and flavonol biosynthesis | ANOVA | 0.025662772 |
| Energy_bin | Protein export | ANOVA | 0.025889019 |
| Energy_bin | DNA replication | ANOVA | 0.026934029 |
| Energy_bin | Primary immunodeficiency | ANOVA | 0.027524778 |
| Energy_bin | Glycosphingolipid biosynthesis - lacto and neolacto series | ANOVA | 0.027782212 |
| Energy_bin | Indole alkaloid biosynthesis | ANOVA | 0.028725346 |
| Energy_bin | Amoebiasis | ANOVA | 0.028866801 |
| Energy_bin | Benzoate degradation | ANOVA | 0.029913338 |
| Energy_bin | D-Alanine metabolism | ANOVA | 0.029961727 |
| Energy_bin | C5-Branched dibasic acid metabolism | ANOVA | 0.030293739 |
| Energy_bin | Peptidoglycan biosynthesis | ANOVA | 0.031023499 |
| Energy_bin | Glycerolipid metabolism | ANOVA | 0.032020201 |
| Energy_bin | Bisphenol degradation | ANOVA | 0.032129248 |
| Energy_bin | Betalain biosynthesis | ANOVA | 0.032513208 |
| Energy_bin | Biosynthesis of siderophore group nonribosomal peptides | ANOVA | 0.033939326 |
| Energy_bin | Melanogenesis | ANOVA | 0.035235651 |
| Energy_bin | Amino acid metabolism | ANOVA | 0.037736626 |
| Energy_bin | Ribosome Biogenesis | ANOVA | 0.039545196 |
| Energy_bin | Peroxisome | ANOVA | 0.040442991 |
| Energy_bin | Steroid hormone biosynthesis | ANOVA | 0.041078867 |
| Energy_bin | Amino sugar and nucleotide sugar metabolism | ANOVA | 0.042902641 |
| Energy_bin | Phosphotransferase system (PTS) | ANOVA | 0.043431781 |
| Energy_bin | Arginine and proline metabolism | ANOVA | 0.043807314 |
| Energy_bin | Glycine, serine and threonine metabolism | ANOVA | 0.044386803 |
| Energy_bin | Riboflavin metabolism | ANOVA | 0.044908782 |
| Energy_bin | Metabolism of cofactors and vitamins | ANOVA | 0.04499208 |
| Energy_bin | Systemic lupus erythematosus | ANOVA | 0.045791434 |
| Energy_bin | Biosynthesis of type II polyketide products | ANOVA | 0.047100884 |
| DietType | Other glycan degradation | ANOVA | 0.007486572 |
| DietType | N-Glycan biosynthesis | ANOVA | 0.03160732 |
| DietType | Proteasome | ANOVA | 0.034750295 |
| DietType | Prostate cancer | ANOVA | 0.03926696 |
| DietType | Antigen processing and presentation | ANOVA | 0.039372465 |
| DietType | Progesterone-mediated oocyte maturation | ANOVA | 0.039372465 |
| Cooked | mRNA surveillance pathway | Welch's T-test | 0.006445676 |
| Cooked | Cell cycle | Welch's T-test | 0.009317081 |
| Cooked | Hepatitis C | Welch's T-test | 0.009317081 |
| Cooked | Measles | Welch's T-test | 0.009317081 |
| Cooked | mTOR signaling pathway | Welch's T-test | 0.009317081 |
| Cooked | Phagosome | Welch's T-test | 0.009317081 |
| Cooked | Transcription machinery | Welch's T-test | 0.021347218 |
| Cooked | Various types of N-glycan biosynthesis | Welch's T-test | 0.023199289 |
| Cooked | Sporulation | Welch's T-test | 0.024693602 |
| Cooked | Vibrio cholerae infection | Welch's T-test | 0.025037566 |
| Cooked | Cytoskeleton proteins | Welch's T-test | 0.04573813 |
| Cooked | Cytochrome P450 | Welch's T-test | 0.049095188 |
| Cholesterol_bin | Transcription machinery | ANOVA | 0.007389033 |
| Cholesterol_bin | Plant-pathogen interaction | ANOVA | 0.010583548 |
| Cholesterol_bin | Folate biosynthesis | ANOVA | 0.012498951 |
| Cholesterol_bin | Tetracycline biosynthesis | ANOVA | 0.034405715 |
| Cholesterol_bin | Other ion-coupled transporters | ANOVA | 0.036332221 |
| Cholesterol_bin | Proteasome | ANOVA | 0.039954688 |
| Cholesterol_bin | Valine, leucine and isoleucine biosynthesis | ANOVA | 0.040216227 |
| Cholesterol_bin | General function prediction only | ANOVA | 0.042978367 |
| Cholesterol_bin | Prostate cancer | ANOVA | 0.044525651 |
| Cholesterol_bin | Antigen processing and presentation | ANOVA | 0.044753096 |
| Cholesterol_bin | Progesterone-mediated oocyte maturation | ANOVA | 0.044753096 |
| Cholesterol_bin | NOD-like receptor signaling pathway | ANOVA | 0.047390633 |
