this is for holding javascript data
Jenna M. Lang renamed More Results3.md to Results - Sequencing.md
about 10 years ago
Commit id: 5e99ff23d644b6fca130b4cdd6887a1f9dc8be98
deletions | additions
diff --git a/Results - Sequencing.md b/Results - Sequencing.md
new file mode 100644
index 0000000..60f899e
--- /dev/null
+++ b/Results - Sequencing.md
...
##Sequence Processing and Summary Statistics
The number of high-quality sequences per meal ranged from 168,669-318,956. After OTU assignment, mitochondrial and chloroplast sequences were filtered out, and sequences that were observed only once (globally) were removed. After filtration, the range of sequences per sample decreased to 974-279,136. All subsequent diversity analyses were performed on samples that were rarefied to 974 sequences per sample.
##Taxonomic Composition and Diversity of the Different Dietary Patterns
In terms of taxonomic richness (both measured by number of OTUs and phylogenetic diversity,) there was no significant difference between diet types (Fig) (non-parametric Kruskal-Wallis test with compare\_alpha\_diversity.py, P>0.6). We also tested for the significant variation in frequency of individual OTUs between diet types using the Kruskal-Wallis test as implemented in the group_significance.py script. Before conducting these tests, we removed OTUs that were not present in at least 3 of the 15 samples. None of the OTUs were significantly different between the three diet types.