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Guido Uguzzoni edited untitled.tex
almost 9 years ago
Commit id: dc0261742c5f3a8a707ca7196e53f056467a0295
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The selection of the protein domain families are based on two main criteria :
\begin{itemize}
\item a statistical relevant sequence sample of the protein
family, family i.e., the number of effective belonging sequences (similarity <0.8) greater than 500.
\item the presence at least of one experimental solved structure by X-ray diffraction of a biological assembly with homo-oligomers (containing the domain) with a good resolution (< 3A \AN)
\end{itemize}
...
\item within the domains on the different chains, i.e. the \textit{intra-chains distances},
\item between different chains (paired domains in different homo-oligomers), i.e. the \textit{inter-chains distances}.
\end{enumerate}
\item We select only chains that have a given coverage of the domain,
the backmapped part of the domain
it is over $ 60 \%
$. $ of the alignment length.
\item In order to include only interacting homo-oligomers we filter out the ones that have an interaction surface under a given threshold.
\end{itemize}
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