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Guido Uguzzoni edited untitled.tex
almost 9 years ago
Commit id: 2b5365534ab4a398a2ed684a586f32a1e886e889
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\item presence at least of one experimental solved structure by X-ray diffraction of a biological assembly with homo-oligomers (containing the domain) with a good resolution (< 3 \AN)
\end{itemize}
The Since the quaternary structure signals are likely to depends on the chains domains
architecture.
In architecture, in order to be sure to include all the different biological assembly that are
at the time experimentally at disposal we compare the DCA co-evolutionary signal with
different several PDB
structures informations. structures.
On this
""" point some remarks are necessary.
We collect all PDB with a biological assembly that contains homo-oligomers of the pfam domains selected.
We create a map between the alignment positions and the 3D inter-residues real positions for each pfam - PDB.
To do so we extract the real positions between residues:
...