this is for holding javascript data
Guido Uguzzoni edited untitled.tex
almost 9 years ago
Commit id: 25113e8d7f9b248580d94981338ee6471718cd09
deletions | additions
diff --git a/untitled.tex b/untitled.tex
index b6a6151..b0d291a 100644
--- a/untitled.tex
+++ b/untitled.tex
...
\begin{itemize}
\item We collect all PDB with a biological assembly that contains homo-oligomers of the pfam domain selected.
\item We create a map between the alignment positions and the 3D inter-residues real positions for each PDB ( \textbf{backmapping} ) To do so we extract the real positions between residues:
\begin{itemize} \begin{enumerate}
\item within the domains on the different chains, i.e. the \textit{intra-chains distances},
\item between different chains (pairing of the domains with the homo-oligomers), i.e. the \textit{inter-chains distances}.
\end{itemize} \end{enumerate}
\item We select only chains that have a given coverage of the domain, backmapped part of the domain over ??$60%$.
\item In order to include only interacting homo-oligomers we filter out the ones that have an interaction surface under a given threshold.
\item s
...