Friederike Dündar edited section_Normalization_Methods_begin_itemize__.tex  almost 9 years ago

Commit id: aa7206f42174ab237164fca7f77883697aa8587d

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\section{Normalization Methods}  The number of sequenced reads mapped to a gene is proportional to its expression level, the sequencing depth and (in the case of short read sequencing) the length of the gene.  \begin{itemize}  \item Total Count  \item Upper Quartile 

\item CPM  \item TPM  \item RawCount  \end{itemize} \begin{table}[h!]  \caption[Normalization methods.]{\textsf{Normalization methods.}}  \label{tab:normMethods}  \begin{small}  \begin{tabular}{lll}  \textbf{Name} & \textbf{Details} & \textbf{Caveats}  \tabularnewline \toprule  %-----------------------  Total Count & $\frac{gene read count}{total read number}$ & inappropriate if the genes changing between the two conditions are a small group of highly expressed genes   \tabularnewline \midrule  %-----------------------  \tabularnewline \bottomrule  %-----------------------  \end{tabular}  \end{small}  \end{table}  anticipate that a small number of highly expressed genes are l