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Friederike Dündar edited section_Normalization_Methods_begin_itemize__.tex
almost 9 years ago
Commit id: aa7206f42174ab237164fca7f77883697aa8587d
deletions | additions
diff --git a/section_Normalization_Methods_begin_itemize__.tex b/section_Normalization_Methods_begin_itemize__.tex
index 6c742db..7c8e908 100644
--- a/section_Normalization_Methods_begin_itemize__.tex
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...
\section{Normalization Methods}
The number of sequenced reads mapped to a gene is proportional to its expression level, the sequencing depth and (in the case of short read sequencing) the length of the gene.
\begin{itemize}
\item Total Count
\item Upper Quartile
...
\item CPM
\item TPM
\item RawCount
\end{itemize}
\begin{table}[h!]
\caption[Normalization methods.]{\textsf{Normalization methods.}}
\label{tab:normMethods}
\begin{small}
\begin{tabular}{lll}
\textbf{Name} & \textbf{Details} & \textbf{Caveats}
\tabularnewline \toprule
%-----------------------
Total Count & $\frac{gene read count}{total read number}$ & inappropriate if the genes changing between the two conditions are a small group of highly expressed genes
\tabularnewline \midrule
%-----------------------
\tabularnewline \bottomrule
%-----------------------
\end{tabular}
\end{small}
\end{table}
anticipate that a small number of highly expressed genes are l