this is for holding javascript data
sr320 added gonad links
about 10 years ago
Commit id: b08bf11653cd44eacf3534a774259139d9079b86
deletions | additions
diff --git a/O_lurida.md b/O_lurida.md
index dbb76c8..cca6d7b 100644
--- a/O_lurida.md
+++ b/O_lurida.md
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|Ol-larv 1000_2 | larvae | 0812; 103939; 36SE|
|Ol-larv 1600_2 | larvae | 0812; 103939; 36SE|
|Ol-larv 2200_2 | larvae | 0812; 103939; 36SE|
|Ol-Femalemix_106a | gonad | 36SE |
|Ol-Malemix_106a | gonad | 36SE |
|Ol-Femalemix_108a | gonad | 36SE |
|Ol-Malemix_108a | gonad | 36SE |
|Ol-Femalemix_106A | gonad | 72PE |
|Ol-Malemix_106A | gonad | 72PE |
|Ol-Femalemix_108A | gonad | 72PE |
|Ol-Malemix_108A | gonad | 72PE |
---
Libraries Ol-larv 400-1 and Ol-larv 2000-1 were described as part of the publication:
**Timmins-Schiffman, Timmins-Schiffman, E. B., Friedman, C. S., Metzger, D. C., White, S. J. and Roberts, S. B. (2013), Genomic resource development for shellfish of conservation concern. Molecular Ecology Resources, 13: 295–305. doi:
10.1111/1755-0998.12052** 10.1111/1755-0998.12052
>Larvae were transferred to the University of Washington 12 h post spawning. Larvae (12 larvae/mL) were evenly distributed to six 4.5-L larval chambers. Larvae were sampled from all chambers by filtering them onto a 35 μm screen and flash freezing in liquid N2 on days one, two and three post-fertilization. Two RNA-seq libraries (Ol-larv 400_1 and Ol-larv 2000_1) were constructed from pooled mRNA (13 μg per sample).
...
In order to characterize the reproductive transcriptome of the Olympia oyster four libraries were made in from pooled gonad samples. The
ideas IDs were 106A_Female, 106A_Male, 108A_Female, 108A_Female.
These libraries were done in late 2012 and were sequenced on the Illumina HiSeqplatform on a 72PE run. An additional
run lane was
performed at XXSE run as a bonus as
bonus. 36SE.
Raw data is available in the following locations
IPlant
* [Ol-Femalemix_106a](http://de.iplantcollaborative.org/dl/EA748B7B-82D8-4209-A4A3-DBE4D3D7EACC)
* [Ol-Malemix_106a](http://de.iplantcollaborative.org/dl/7644B286-524F-4053-9972-2215BF514A92)
* [Ol-Femalemix_108a](http://de.iplantcollaborative.org/dl/7F43EC7F-F3D1-443E-8796-687626BF18B4)
* [Ol-Malemix_108a](http://de.iplantcollaborative.org/dl/7CA3F117-BE11-4A33-9432-11C9DD3F8729)
* [Ol-Femalemix_106A_R1](http://de.iplantcollaborative.org/dl/FE3A9DB6-E428-4DF3-B9BD-A3C505751A56)
* [Ol-Femalemix_106A_R2](http://de.iplantcollaborative.org/dl/8146CA1A-E6EE-4CD0-8146-F66ADAC817CF)
* [Ol-Malemix_106A_R1](http://de.iplantcollaborative.org/dl/2CD3938A-BC12-4272-9486-06FE5AF878FF)
* [Ol-Malemix_106A_R2](http://de.iplantcollaborative.org/dl/E649C778-3663-42E7-B494-18790020C9BC)
* [Ol-Femalemix_108A_R1](http://de.iplantcollaborative.org/dl/BBCE0450-6CD9-4939-A35E-229EA57740B6)
* [Ol-Femalemix_108A_R2](http://de.iplantcollaborative.org/dl/1B36CECC-B42E-4761-A4C3-06F40AC696C6)
* [Ol-Malemix_108A_R1](http://de.iplantcollaborative.org/dl/943090E8-CAE4-49D1-8A94-E4462317452B)
* [Ol-Malemix_108A_R2](http://de.iplantcollaborative.org/dl/B92CBF6E-CAB7-4334-9FEC-3B6EB560FAA6)