this is for holding javascript data
Steven Roberts added global url to one figure
over 8 years ago
Commit id: 8628addbf655850873c01c1b4f526e28c549ee44
deletions | additions
diff --git a/results-array.md b/results-array.md
index 40f0c82..cb5259b 100644
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When only features were considered where at least 3 adjacent probes were also differentially methylated in the same direction the number of features (adjacent probe region merged when within 100bp) for oysters #2, #4, and #6 was 112, 58, and 62, respectively. A majority of these features were hypomethylated (108, 48, and 53, respectively). Genome feature tracks (bedGraph) for each oysters are available in _genome-feature-tracks_ directory:
```
2M_3plusmerge_Hyper.bed
2M_3plusmerge_Hypo.bed
4M_3plusmerge_Hyper.bed
4M_3plusmerge_Hypo.bed
6M_3plusmerge_Hyper.bed
6M_3plusmerge_Hypo.bed
```
![](./figures/igv-dmr-2.png)
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![scaffold418_576986](./figures/scaffold481_576986.png)
![scaffold418_576986](https://www.authorea.com/users/3858/articles/18000/master/file/figures/scaffold481_576986.png)
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Another DMR that is consistent across oysters is located within the intron of [_Homeobox protein LOX2_](http://www.uniprot.org/uniprot/K1RXD0). Homeobox are transcription factors often associated with developmental processes.