Zebrafish duplication bibliography

Blomme, T., Vandepoele, K., De Bodt, S., Simillion, C., Maere, S., & Van de Peer, Y. (2006). The gain and loss of genes during 600 million years of vertebrate evolution. Genome Biology, 7(5), R43. doi:10.1186/gb-2006-7-5-r43 Brunet, F. G., Roest Crollius, H., Paris, M., Aury, J. M., Gibert, P., Jaillon, O., et al. (2006). Gene loss and evolutionary rates following whole-genome duplication in teleost fishes. Molecular Biology and Evolution, 23(9), 1808-1816. doi:10.1093/molbev/msl049 Chain, F. J., Ilieva, D., & Evans, B. J. (2008). Duplicate gene evolution and expression in the wake of vertebrate allopolyploidization. BMC Evolutionary Biology, 8, 43-2148-8-43. doi:10.1186/1471-2148-8-43; 10.1186/1471-2148-8-43 Christoffels, A., Brenner, S., & Venkatesh, B. (2006). Tetraodon genome analysis provides further evidence for whole-genome duplication in the ray-finned fish lineage. Comparative Biochemistry and Physiology.Part D, Genomics & Proteomics, 1(1), 13-19. doi:10.1016/j.cbd.2005.06.001; 10.1016/j.cbd.2005.06.001 Christoffels, A., Koh, E. G., Chia, J. M., Brenner, S., Aparicio, S., & Venkatesh, B. (2004). Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Molecular Biology and Evolution, 21(6), 1146-1151. doi:10.1093/molbev/msh114 de Souza, F. S., Bumaschny, V. F., Low, M. J., & Rubinstein, M. (2005). Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes. Molecular Biology and Evolution, 22(12), 2417-2427. doi:10.1093/molbev/msi236 Li, C., Orti, G., Zhang, G., & Lu, G. (2007). A practical approach to phylogenomics: The phylogeny of ray-finned fish (actinopterygii) as a case study. BMC Evolutionary Biology, 7, 44. doi:10.1186/1471-2148-7-44 McClintock, J. M., Carlson, R., Mann, D. M., & Prince, V. E. (2001). Consequences of hox gene duplication in the vertebrates: An investigation of the zebrafish hox paralogue group 1 genes. Development (Cambridge, England), 128(13), 2471-2484. Ouedraogo, M., Bettembourg, C., Bretaudeau, A., Sallou, O., Diot, C., Demeure, O., et al. (2012). The duplicated genes database: Identification and functional annotation of co-localised duplicated genes across genomes. PloS One, 7(11), e50653. doi:10.1371/journal.pone.0050653; 10.1371/journal.pone.0050653 Robinson-Rechavi, M., Marchand, O., Escriva, H., Bardet, P. L., Zelus, D., Hughes, S., et al. (2001). Euteleost fish genomes are characterized by expansion of gene families. Genome Research, 11(5), 781-788. doi:10.1101/gr.165601 Semon, M., & Wolfe, K. H. (2007). Rearrangement rate following the whole-genome duplication in teleosts. Molecular Biology and Evolution, 24(3), 860-867. doi:10.1093/molbev/msm003 Semon, M., & Wolfe, K. H. (2007). Reciprocal gene loss between tetraodon and zebrafish after whole genome duplication in their ancestor. Trends in Genetics : TIG, 23(3), 108-112. doi:10.1016/j.tig.2007.01.003 Steinke, D., Hoegg, S., Brinkmann, H., & Meyer, A. (2006). Three rounds (1R/2R/3R) of genome duplications and the evolution of the glycolytic pathway in vertebrates. BMC Biology, 4, 16. doi:10.1186/1741-7007-4-16 Taylor, J. S., Braasch, I., Frickey, T., Meyer, A., & Van de Peer, Y. (2003). Genome duplication, a trait shared by 22000 species of ray-finned fish. Genome Research, 13(3), 382-390. doi:10.1101/gr.640303 Van de Peer, Y. (2004). Computational approaches to unveiling ancient genome duplications. Nature Reviews.Genetics, 5(10), 752-763. doi:10.1038/nrg1449 Van de Peer, Y. (2004). Tetraodon genome confirms takifugu findings: Most fish are ancient polyploids. Genome Biology, 5(12), 250. doi:10.1186/gb-2004-5-12-250 Van de Peer, Y., Taylor, J. S., & Meyer, A. (2003). Are all fishes ancient polyploids? Journal of Structural and Functional Genomics, 3(1-4), 65-73. Woods, I. G., Wilson, C., Friedlander, B., Chang, P., Reyes, D. K., Nix, R., et al. (2005). The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Research, 15(9), 1307-1314. doi:10.1101/gr.4134305 Taylor, J. S., Braasch, I., Frickey, T., Meyer, A., & Van de Peer, Y. (2003) is where I got my sample set. Blomme, T., Vandepoele, K., De Bodt, S., Simillion, C., Maere, S., & Van de Peer, Y. (2006) a possible source of a full set of zebrafish paralogs created by the teleost duplication.