twchrist edited Feb 24.tex  about 10 years ago

Commit id: 632307b6db8ca06d9a6b61113ab96b704d20b3f8

deletions | additions      

       

I have transferred the ~50 gene pair dataset from Taylor et al. 2006 to a   table that is parsable. Furthermore I have obtained the Ensembl stable ID's  for the genes by manually entering the NCBI ID's from the original table into NCBI and  pulling the ENSEMBLGENE ID provided. ~10 11  of the 50 genes had some form of cataloging error, such as missing data (either there was no linked ENSEMBL GENE or more often the NCBI ID provided  was no longer valid) or conflicting gene names (the gene returned by NCBI does not match   the gene name in the table), so I ommitted them   for now, in order to prevent errors. I will perform independent homology searches,  if time permits, to confirm the exact paralog - ortholog relationships the table  documents. Currently the sample set is stored in sampleWGDParalogs.txt in the Homology  folder.  \end{verbatim}  \subsection{Genes removed}  \begin{itemize}  \item FKH1  \item NGCAM  \item NRCAM  \item OPRD  \item HSPA1  \item HUR  \item POU3F3  \item LDHB  \item TPI  \item NODA12  \item L1CAM  \end{itemize}  \subsection*{Authorea}  \begin{verbatim}  I have attempted to use my new authorea administrator privileges to post code but