deletions | additions       diff --git a/figures/bacteria_tree/bacteria_tree.png b/figures/bacteria_tree/bacteria_tree.png  deleted file mode 100644  index 81f6993..0000000  Binary files a/figures/bacteria_tree/bacteria_tree.png and /dev/null differ diff --git a/figures/bacteria_tree/caption.tex b/figures/bacteria_tree/caption.tex  deleted file mode 100644  index eb9a67e..0000000  --- a/figures/bacteria_tree/caption.tex  +++ /dev/null 
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Phylogenetic tree of sequences passing a user defined  sparcity threshold (0.6) for at least one day of the time series. Branches are  colored by phylum. $^{13}$C-responders for cellulose (blue) and xylose (green)  are indicated by a point beside the respective branch. Heatmap demonstrates  log$_{2}$ fold change of each taxa through the full time series for  both treatments (cellulose, left; xylose, right).   diff --git a/layout.md b/layout.md  index 259042e..6fbbcd6 100644  --- a/layout.md  +++ b/layout.md 
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figures/l2fc_fig1/l2fc_fig.png  figures/xylose_rspndr_bar/xylose_rspndr_bar.png  figures/shift_and_rabund2/shift_and_rabund.png  figures/bacteria_tree/bacteria_tree.png  figures/shift_and_rabund3/shift_and_rabund.png  figures/copy_number/copy_number.png  figures/all_rspndr_bar/all_rspndr_bar.png